At1g01010	chr1:000003760	0.0	W/3760-3913,3996-4276,4486-4605,4706-5095,5174-5326,5439-5630	AT1G01010.1 CDS NAC domain containing protein 1 [TAIR10] CDS gene_syn ANAC001, NAC domain containing protein 1, NAC001, T25K16.1, T25K16_1 gene NAC001 go_process regulation of transcription|GO:0045449||IEA go_component cellular_component|GO:0005575||ND go_process multicellular organismal development|GO:0007275||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC domain containing protein 1 note NAC domain containing protein 1 (NAC001); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 69 (TAIR:AT4G01550.1); Has 2503 Blast hits to 2496 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2502; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G01010.1p transcript_id AT1G01010.1 protein_id AT1G01010.1p transcript_id AT1G01010.1
AT1G01020	chr1:000006915	0.0	C/6915-7069,7157-7232,7384-7450,7564-7649,7762-7835,7942-7987,8236-8325,8417-8419	AT1G01020.5 AT1G01020.5 CDS Arv1-like protein
At1g01020	chr1:000006915	0.0	C/6915-7069,7157-7232,7384-7450,7564-7649,7762-7835,7942-7987,8236-8325,8417-8464,8571-8666	AT1G01020.1 CDS Arv1-like protein [TAIR10] CDS gene_syn ARV1, T25K16.2, T25K16_2 gene ARV1 go_component endoplasmic reticulum|GO:0005783|16725371|IDA go_component membrane|GO:0016020||ISS go_process sphingolipid metabolic process|GO:0006665|16725371|IMP go_process sterol metabolic process|GO:0016125|16725371|IMP go_function molecular_function|GO:0003674||ND product Arv1-like protein note ARV1; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1); Has 311 Blast hits to 311 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 115; Plants - 42; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G01020.1p transcript_id AT1G01020.1 protein_id AT1G01020.1p transcript_id AT1G01020.1
AT1G01020	chr1:000006915	0.0	C/6915-7069,7157-7232,7384-7450,7564-7649,7762-7835,7942-7987,8236-8442	AT1G01020.3 AT1G01020.3 CDS Arv1-like protein
AT1G01020	chr1:000006915	0.0	C/6915-7069,7157-7232,7384-7450,7564-7649,7762-7835,7942-7987,8236-8442	AT1G01020.4 AT1G01020.4 CDS Arv1-like protein
At1g01020	chr1:000007315	0.0	C/7315-7450,7564-7649,7762-7835,7942-7987,8236-8325,8417-8464,8571-8666	AT1G01020.2 CDS Arv1-like protein [TAIR10] CDS gene_syn ARV1, T25K16.2, T25K16_2 gene ARV1 go_component endoplasmic reticulum|GO:0005783|16725371|IDA go_component membrane|GO:0016020||ISS go_process sphingolipid metabolic process|GO:0006665|16725371|IMP go_process sterol metabolic process|GO:0016125|16725371|IMP go_function molecular_function|GO:0003674||ND product Arv1-like protein note ARV1; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01020.2p transcript_id AT1G01020.2 protein_id AT1G01020.2p transcript_id AT1G01020.2
AT1G01020	chr1:000007315	0.0	C/7315-7450,7564-7649,8236-8325,8417-8419	AT1G01020.6 AT1G01020.6 CDS Arv1-like protein
AT1G01030	chr1:000011864	0.0	C/11864-12354,12424-12940	AT1G01030.2 AT1G01030.2 CDS AP2/B3-like transcriptional factor family protein
At1g01030	chr1:000011864	0.0	C/11864-12940	AT1G01030.1 CDS AP2/B3-like transcriptional factor family protein [TAIR10] CDS gene_syn NGA3, NGATHA3, T25K16.3, T25K16_3 gene NGA3 go_component cellular_component|GO:0005575||ND go_process flower development|GO:0009908|16603651|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process leaf development|GO:0048366|16603651|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product AP2/B3-like transcriptional factor family protein note NGATHA3 (NGA3); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1); Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01030.1p transcript_id AT1G01030.1 protein_id AT1G01030.1p transcript_id AT1G01030.1
At1g01040	chr1:000023519	0.0	W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079	AT1G01040.1 CDS dicer-like 1 [TAIR10] CDS gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4, dicer-like 1 gene DCL1 function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. go_component nucleus|GO:0005634|15821876|IDA go_component nucleus|GO:0005634|17369351|IDA go_component nuclear dicing body|GO:0010445|17442570|IDA go_process cytokinesis|GO:0000910|10556049|IMP go_process RNA processing|GO:0006396|12225663|ISS go_process virus induced gene silencing|GO:0009616|17090584|IMP go_process embryonic pattern specification|GO:0009880|8787738|IMP go_process flower development|GO:0009908|8787738|TAS go_process suspensor development|GO:0010098||IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|8787738|IMP go_process production of ta-siRNAs involved in RNA interference|GO:0010267|16699516|IMP go_process production of lsiRNA involved in RNA interference|GO:0010599|18003861|IMP go_process production of siRNA involved in RNA interference|GO:0030422|17558406|IMP go_process primary microRNA processing|GO:0031053|16144699|TAS go_process production of miRNAs involved in gene silencing by miRNA|GO:0035196|16810317|IGI go_process mRNA cleavage involved in gene silencing by miRNA|GO:0035279|15851028|IMP go_function double-stranded RNA binding|GO:0003725|15821876|IDA go_function ribonuclease III activity|GO:0004525||ISS go_function protein binding|GO:0005515|15821876|IPI go_function ATP-dependent helicase activity|GO:0008026||ISS product dicer-like 1 note dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Dicer double-stranded RNA-binding fold (InterPro:IPR005034); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2); Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328; Bacteria - 11461; Metazoa - 3615; Fungi - 1668; Plants - 1373; Viruses - 45; Other Eukaryotes - 3468 (source: NCBI BLink). protein_id AT1G01040.1p transcript_id AT1G01040.1 protein_id AT1G01040.1p transcript_id AT1G01040.1
At1g01040	chr1:000023519	0.0	W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27536,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079	AT1G01040.2 CDS dicer-like 1 [TAIR10] CDS gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4, dicer-like 1 gene DCL1 function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. go_component nucleus|GO:0005634|15821876|IDA go_component nucleus|GO:0005634|17369351|IDA go_component nuclear dicing body|GO:0010445|17442570|IDA go_process cytokinesis|GO:0000910|10556049|IMP go_process RNA processing|GO:0006396|12225663|ISS go_process virus induced gene silencing|GO:0009616|17090584|IMP go_process embryonic pattern specification|GO:0009880|8787738|IMP go_process flower development|GO:0009908|8787738|TAS go_process suspensor development|GO:0010098||IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|8787738|IMP go_process production of ta-siRNAs involved in RNA interference|GO:0010267|16699516|IMP go_process production of lsiRNA involved in RNA interference|GO:0010599|18003861|IMP go_process production of siRNA involved in RNA interference|GO:0030422|17558406|IMP go_process primary microRNA processing|GO:0031053|16144699|TAS go_process production of miRNAs involved in gene silencing by miRNA|GO:0035196|16810317|IGI go_process mRNA cleavage involved in gene silencing by miRNA|GO:0035279|15851028|IMP go_function double-stranded RNA binding|GO:0003725|15821876|IDA go_function ribonuclease III activity|GO:0004525||ISS go_function protein binding|GO:0005515|15821876|IPI go_function ATP-dependent helicase activity|GO:0008026||ISS product dicer-like 1 note dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.1). protein_id AT1G01040.2p transcript_id AT1G01040.2 protein_id AT1G01040.2p transcript_id AT1G01040.2
At1g01046	chr1:000028500	0.0	W/28500-28706	AT1G01046.1 [TAIR10] miRNA gene_syn MIR838A, microRNA838A gene MIR838A function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUCUUCUACUUCUUGCACA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MIR838A (microRNA838A); miRNA transcript_id AT1G01046.1
At1g01050	chr1:000031382	0.0	C/31382-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670	AT1G01050.1 CDS pyrophosphorylase 1 [TAIR10] CDS gene_syn AtPPa1, PPa1, T25K16.5, T25K16_5, pyrophosphorylase 1 gene PPa1 function Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate. go_process phosphate metabolic process|GO:0006796||IEA go_component nucleus|GO:0005634|15610358|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_component membrane|GO:0016020||ISS go_process metabolic process|GO:0008152||ISS go_function inorganic diphosphatase activity|GO:0004427||IDA product pyrophosphorylase 1 note pyrophosphorylase 1 (PPa1); FUNCTIONS IN: inorganic diphosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 3 (TAIR:AT2G46860.1); Has 5987 Blast hits to 5987 proteins in 1845 species: Archae - 172; Bacteria - 4313; Metazoa - 247; Fungi - 261; Plants - 270; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink). protein_id AT1G01050.1p transcript_id AT1G01050.1 protein_id AT1G01050.1p transcript_id AT1G01050.1
AT1G01050	chr1:000031382	0.0	C/31382-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670	AT1G01050.2 AT1G01050.2 CDS pyrophosphorylase 1
At1g01060	chr1:000033992	0.0	C/33992-34327,34401-35471,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.4 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2567 Blast hits to 2041 proteins in 275 species: Archae - 2; Bacteria - 252; Metazoa - 294; Fungi - 166; Plants - 1044; Viruses - 30; Other Eukaryotes - 779 (source: NCBI BLink). protein_id AT1G01060.4p transcript_id AT1G01060.4 protein_id AT1G01060.4p transcript_id AT1G01060.4
At1g01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.1 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink). protein_id AT1G01060.1p transcript_id AT1G01060.1 protein_id AT1G01060.1p transcript_id AT1G01060.1
At1g01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.2 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink). protein_id AT1G01060.2p transcript_id AT1G01060.2 protein_id AT1G01060.2p transcript_id AT1G01060.2
At1g01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.3 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01060.3p transcript_id AT1G01060.3 protein_id AT1G01060.3p transcript_id AT1G01060.3
AT1G01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.7 AT1G01060.7 CDS Homeodomain-like superfamily protein
AT1G01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.8 AT1G01060.8 CDS Homeodomain-like superfamily protein
At1g01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35999,36090-36171,36624-36685,36810-36836	AT1G01060.5 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1). protein_id AT1G01060.5p transcript_id AT1G01060.5 protein_id AT1G01060.5p transcript_id AT1G01060.5
AT1G01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35999,36090-36171,36624-36685,36810-36836	AT1G01060.6 AT1G01060.6 CDS Homeodomain-like superfamily protein
At1g01070	chr1:000038898	0.0	C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40877	AT1G01070.1 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn T25K16.7, T25K16_7 go_component membrane|GO:0016020||IEA product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1); Has 3211 Blast hits to 3199 proteins in 599 species: Archae - 23; Bacteria - 1686; Metazoa - 4; Fungi - 6; Plants - 1233; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink). protein_id AT1G01070.1p transcript_id AT1G01070.1 protein_id AT1G01070.1p transcript_id AT1G01070.1
At1g01070	chr1:000038898	0.0	C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40597	AT1G01070.2 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn T25K16.7, T25K16_7 go_component membrane|GO:0016020||IEA product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01070.2p transcript_id AT1G01070.2 protein_id AT1G01070.2p transcript_id AT1G01070.2
At1g01073	chr1:000044677	0.0	W/44677-44787	AT1G01073.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G01073.1p transcript_id AT1G01073.1 protein_id AT1G01073.1p transcript_id AT1G01073.1
At1g01080	chr1:000045503	0.0	C/45503-45559,45646-45954,46044-46145,46373-46789	AT1G01080.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn T25K16.19, T25K16_19 go_component chloroplast|GO:0009507|18431481|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01080.2p transcript_id AT1G01080.2 protein_id AT1G01080.2p transcript_id AT1G01080.2
At1g01080	chr1:000045503	0.0	C/45503-45559,45646-45954,46044-46145,46376-46789	AT1G01080.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn T25K16.19, T25K16_19 go_component nucleus|GO:0005634|14617066|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819; Bacteria - 303967; Metazoa - 99035; Fungi - 14863; Plants - 31737; Viruses - 35534; Other Eukaryotes - 13112 (source: NCBI BLink). protein_id AT1G01080.1p transcript_id AT1G01080.1 protein_id AT1G01080.1p transcript_id AT1G01080.1
AT1G01080	chr1:000045610	0.0	C/45610-45954,46044-46145,46376-46789	AT1G01080.3 AT1G01080.3 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g01090	chr1:000047705	0.0	C/47705-47982,48075-48852,48936-49166	AT1G01090.1 CDS pyruvate dehydrogenase E1 alpha [TAIR10] CDS gene_syn PDH-E1 ALPHA, T25K16.8, T25K16_8, pyruvate dehydrogenase E1 alpha gene PDH-E1 ALPHA function pyruvate dehydrogenase E1 alpha subunit go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process glycolysis|GO:0006096||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_component plastid|GO:0009536|9393637|ISS go_process metabolic process|GO:0008152||ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739|9393637|ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS product pyruvate dehydrogenase E1 alpha note pyruvate dehydrogenase E1 alpha (PDH-E1 ALPHA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: oxidation reduction, glycolysis, metabolic process; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1); Has 10065 Blast hits to 10059 proteins in 1888 species: Archae - 130; Bacteria - 6136; Metazoa - 517; Fungi - 241; Plants - 224; Viruses - 0; Other Eukaryotes - 2817 (source: NCBI BLink). protein_id AT1G01090.1p transcript_id AT1G01090.1 protein_id AT1G01090.1p transcript_id AT1G01090.1
At1g01100	chr1:000050284	0.0	C/50284-50337,50419-50447,50496-50631,50883-50954	AT1G01100.3 CDS 60S acidic ribosomal protein family [TAIR10] CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 1446 Blast hits to 1446 proteins in 306 species: Archae - 3; Bacteria - 0; Metazoa - 542; Fungi - 379; Plants - 324; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink). protein_id AT1G01100.3p transcript_id AT1G01100.3 protein_id AT1G01100.3p transcript_id AT1G01100.3
At1g01100	chr1:000050284	0.0	C/50284-50337,50419-50631,50883-50954	AT1G01100.1 CDS 60S acidic ribosomal protein family [TAIR10] CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.1p transcript_id AT1G01100.1 protein_id AT1G01100.1p transcript_id AT1G01100.1
At1g01100	chr1:000050284	0.0	C/50284-50337,50419-50631,50883-50954	AT1G01100.2 CDS 60S acidic ribosomal protein family [TAIR10] CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.2p transcript_id AT1G01100.2 protein_id AT1G01100.2p transcript_id AT1G01100.2
At1g01100	chr1:000050284	0.0	C/50284-50337,50419-50631,50883-50954	AT1G01100.4 CDS 60S acidic ribosomal protein family [TAIR10] CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.4p transcript_id AT1G01100.4 protein_id AT1G01100.4p transcript_id AT1G01100.4
At1g01110	chr1:000052239	0.0	W/52239-52346,52434-52730,52938-53183,53484-53624,53703-54494	AT1G01110.2 CDS IQ-domain 18 [TAIR10] CDS gene_syn IQ-domain 18, IQD18, T25K16.10, T25K16_10 gene IQD18 go_function molecular_function|GO:0003674||ND product IQ-domain 18 note IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01110.2p transcript_id AT1G01110.2 protein_id AT1G01110.2p transcript_id AT1G01110.2
At1g01110	chr1:000053022	0.0	W/53022-53183,53484-53624,53703-54494	AT1G01110.1 CDS IQ-domain 18 [TAIR10] CDS gene_syn IQ-domain 18, IQD18, T25K16.10, T25K16_10 gene IQD18 go_component mitochondrion|GO:0005739||IEA go_function molecular_function|GO:0003674||ND product IQ-domain 18 note IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 1112 Blast hits to 678 proteins in 50 species: Archae - 0; Bacteria - 10; Metazoa - 109; Fungi - 16; Plants - 528; Viruses - 4; Other Eukaryotes - 445 (source: NCBI BLink). protein_id AT1G01110.1p transcript_id AT1G01110.1 protein_id AT1G01110.1p transcript_id AT1G01110.1
At1g01115	chr1:000056624	0.0	W/56624-56740	AT1G01115.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G01115.1p transcript_id AT1G01115.1 protein_id AT1G01115.1p transcript_id AT1G01115.1
At1g01120	chr1:000057392	0.0	C/57392-58978	AT1G01120.1 CDS 3-ketoacyl-CoA synthase 1 [TAIR10] CDS gene_syn 3-ketoacyl-CoA synthase 1, KCS1, T25K16.11, T25K16_11 gene KCS1 function Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component endoplasmic reticulum|GO:0005783|18465198|IDA go_component membrane|GO:0016020|10074711|ISS go_process very long-chain fatty acid metabolic process|GO:0000038|10074711|IDA go_process response to osmotic stress|GO:0006970|18465198|IEP go_process response to cold|GO:0009409|18465198|IEP go_process response to light stimulus|GO:0009416|18465198|IEP go_process wax biosynthetic process|GO:0010025|10074711|IDA go_process wax biosynthetic process|GO:0010025|10074711|IMP go_process fatty acid elongation|GO:0030497|10074711|IDA go_process cuticle development|GO:0042335|10074711|IMP go_function acyltransferase activity|GO:0008415||ISS go_function fatty acid elongase activity|GO:0009922|10074711|IDA product 3-ketoacyl-CoA synthase 1 note 3-ketoacyl-CoA synthase 1 (KCS1); FUNCTIONS IN: fatty acid elongase activity, acyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosolic ribosome, endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 11 (TAIR:AT2G26640.1); Has 3961 Blast hits to 3946 proteins in 966 species: Archae - 0; Bacteria - 1388; Metazoa - 0; Fungi - 5; Plants - 2408; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). protein_id AT1G01120.1p transcript_id AT1G01120.1 protein_id AT1G01120.1p transcript_id AT1G01120.1
At1g01130	chr1:000061905	0.0	C/61905-61949,62050-62124,63557-63811	AT1G01130.1 CDS CBL-interacting Serine/Threonine-kinase, putative [TAIR10] CDS gene_syn F6F3.33 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01130.1p transcript_id AT1G01130.1 protein_id AT1G01130.1p transcript_id AT1G01130.1
At1g01140	chr1:000064398	0.0	C/64398-64475,64570-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512	AT1G01140.3 CDS CBL-interacting protein kinase 9 [TAIR10] CDS gene_syn CBL-interacting protein kinase 9, CIPK9, F6F3.28, PKS6, PROTEIN KINASE 6, SNF1-RELATED PROTEIN KINASE 3.12, SnRK3.12 gene CIPK9 function Encodes a CBL-interacting protein kinase with similarity to SOS2 go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_process response to cold|GO:0009409|17486125|IEP go_process response to wounding|GO:0009611|17486125|IEP go_process response to salt stress|GO:0009651|17486125|IEP go_process response to mannitol stimulus|GO:0010555|17486125|IEP go_process regulation of potassium ion transport|GO:0043266|17486125|IMP go_process cellular response to potassium ion starvation|GO:0051365|17486125|IMP go_function kinase activity|GO:0016301||ISS product CBL-interacting protein kinase 9 note CBL-interacting protein kinase 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1); Has 130572 Blast hits to 128490 proteins in 4426 species: Archae - 165; Bacteria - 15544; Metazoa - 48044; Fungi - 13206; Plants - 31490; Viruses - 522; Other Eukaryotes - 21601 (source: NCBI BLink). protein_id AT1G01140.3p transcript_id AT1G01140.3 protein_id AT1G01140.3p transcript_id AT1G01140.3
At1g01140	chr1:000064398	0.0	C/64398-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65733-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512	AT1G01140.2 CDS CBL-interacting protein kinase 9 [TAIR10] CDS gene_syn CBL-interacting protein kinase 9, CIPK9, F6F3.28, PKS6, PROTEIN KINASE 6, SNF1-RELATED PROTEIN KINASE 3.12, SnRK3.12 gene CIPK9 function Encodes a CBL-interacting protein kinase with similarity to SOS2 go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_process response to cold|GO:0009409|17486125|IEP go_process response to wounding|GO:0009611|17486125|IEP go_process response to salt stress|GO:0009651|17486125|IEP go_process response to mannitol stimulus|GO:0010555|17486125|IEP go_process regulation of potassium ion transport|GO:0043266|17486125|IMP go_process cellular response to potassium ion starvation|GO:0051365|17486125|IMP go_function kinase activity|GO:0016301||ISS product CBL-interacting protein kinase 9 note CBL-interacting protein kinase 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1); Has 130491 Blast hits to 128500 proteins in 4421 species: Archae - 165; Bacteria - 15543; Metazoa - 48035; Fungi - 13165; Plants - 31462; Viruses - 522; Other Eukaryotes - 21599 (source: NCBI BLink). protein_id AT1G01140.2p transcript_id AT1G01140.2 protein_id AT1G01140.2p transcript_id AT1G01140.2
At1g01140	chr1:000064398	0.0	C/64398-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512	AT1G01140.1 CDS CBL-interacting protein kinase 9 [TAIR10] CDS gene_syn CBL-interacting protein kinase 9, CIPK9, F6F3.28, PKS6, PROTEIN KINASE 6, SNF1-RELATED PROTEIN KINASE 3.12, SnRK3.12 gene CIPK9 function Encodes a CBL-interacting protein kinase with similarity to SOS2 go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_process response to cold|GO:0009409|17486125|IEP go_process response to wounding|GO:0009611|17486125|IEP go_process response to salt stress|GO:0009651|17486125|IEP go_process response to mannitol stimulus|GO:0010555|17486125|IEP go_process regulation of potassium ion transport|GO:0043266|17486125|IMP go_process cellular response to potassium ion starvation|GO:0051365|17486125|IMP go_function kinase activity|GO:0016301||ISS product CBL-interacting protein kinase 9 note CBL-interacting protein kinase 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), CBL-interacting protein kinase (InterPro:IPR020660), NAF domain (InterPro:IPR004041), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1); Has 130203 Blast hits to 128118 proteins in 4349 species: Archae - 165; Bacteria - 15262; Metazoa - 47961; Fungi - 13206; Plants - 31482; Viruses - 522; Other Eukaryotes - 21605 (source: NCBI BLink). protein_id AT1G01140.1p transcript_id AT1G01140.1 protein_id AT1G01140.1p transcript_id AT1G01140.1
AT1G01150	chr1:000070115	0.0	C/70115-70233,70896-70968,71041-71721,71942-71998	AT1G01150.2 AT1G01150.2 CDS Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
At1g01150	chr1:000070115	0.0	C/70115-70285,70840-70968,71041-71721,71942-71998	AT1G01150.1 CDS Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain [TAIR10] CDS gene_syn F6F3.30 go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_function zinc ion binding|GO:0008270||IEA product Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain note Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1); Has 94 Blast hits to 77 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G01150.1p transcript_id AT1G01150.1 protein_id AT1G01150.1p transcript_id AT1G01150.1
AT1G01150	chr1:000070828	0.0	C/70828-70968,71041-71721,71942-71998	AT1G01150.3 AT1G01150.3 CDS Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
At1g01160	chr1:000072583	0.0	W/72583-72669,72915-73016,73087-73163,73287-73395,73488-73740,73822-73883	AT1G01160.2 CDS GRF1-interacting factor 2 [TAIR10] CDS gene_syn F6F3.29, GIF2, GRF1-interacting factor 2 gene GIF2 function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA go_component nucleus|GO:0005634|15326298|ISS go_process cell proliferation|GO:0008283|19648231|IEP go_process leaf development|GO:0048366|19648231|IMP go_function transcription coactivator activity|GO:0003713|12974814|ISS go_function protein binding|GO:0005515|15326298|IPI product GRF1-interacting factor 2 note GRF1-interacting factor 2 (GIF2); FUNCTIONS IN: protein binding, transcription coactivator activity; INVOLVED IN: cell proliferation, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 35 Blast hits to 35 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G01160.2p transcript_id AT1G01160.2 protein_id AT1G01160.2p transcript_id AT1G01160.2
At1g01160	chr1:000072583	0.0	W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883	AT1G01160.1 CDS GRF1-interacting factor 2 [TAIR10] CDS gene_syn F6F3.29, GIF2, GRF1-interacting factor 2 gene GIF2 function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA go_component nucleus|GO:0005634|15326298|ISS go_process cell proliferation|GO:0008283|19648231|IEP go_process leaf development|GO:0048366|19648231|IMP go_function transcription coactivator activity|GO:0003713|12974814|ISS go_function protein binding|GO:0005515|15326298|IPI product GRF1-interacting factor 2 note GRF1-interacting factor 2 (GIF2); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 425 Blast hits to 425 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 291; Fungi - 20; Plants - 89; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G01160.1p transcript_id AT1G01160.1 protein_id AT1G01160.1p transcript_id AT1G01160.1
At1g01170	chr1:000074105	0.0	C/74105-74250,74338-74443	AT1G01170.1 CDS ozone-responsive stress-like protein (DUF1138) [TAIR10] CDS gene_syn F6F3.32 go_component mitochondrion|GO:0005739|15276431|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to stress|GO:0006950||ISS go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1138) note Protein of unknown function (DUF1138); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1); Has 86 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01170.1p transcript_id AT1G01170.1 protein_id AT1G01170.1p transcript_id AT1G01170.1
At1g01170	chr1:000074105	0.0	C/74105-74250,74338-74443	AT1G01170.2 CDS ozone-responsive stress-like protein (DUF1138) [TAIR10] CDS gene_syn F6F3.32 go_component membrane|GO:0016020|17432890|IDA go_process response to stress|GO:0006950||ISS go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1138) note Protein of unknown function (DUF1138); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01170.2p transcript_id AT1G01170.2 protein_id AT1G01170.2p transcript_id AT1G01170.2
At1g01180	chr1:000075633	0.0	W/75633-76556	AT1G01180.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F6F3.5 go_process lipid biosynthetic process|GO:0008610||IEA go_function methyltransferase activity|GO:0008168||IEA product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: lipid biosynthetic process; EXPRESSED IN: sperm cell, hypocotyl; CONTAINS InterPro DOMAIN/s: Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase (InterPro:IPR007072); Has 274 Blast hits to 274 proteins in 51 species: Archae - 0; Bacteria - 75; Metazoa - 2; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). protein_id AT1G01180.1p transcript_id AT1G01180.1 protein_id AT1G01180.1p transcript_id AT1G01180.1
At1g01183	chr1:000078932	0.0	C/78932-79032	AT1G01183.1 [TAIR10] miRNA gene_syn MICRORNA 165, MIR165, MIR165A, microRNA165A gene MIR165A function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC go_component cellular_component|GO:0005575||ND go_process gene silencing by miRNA|GO:0035195|15200956|TAS go_function molecular_function|GO:0003674||ND product MIR165A (microRNA165A); miRNA transcript_id AT1G01183.1
At1g01190	chr1:000083045	0.0	C/83045-83671,83884-84864	AT1G01190.1 CDS cytochrome P450, family 78, subfamily A, polypeptide 8 [TAIR10] CDS gene_syn cytochrome P450, family 78, subfamily A, polypeptide 8, CYP78A8, F6F3.25 gene CYP78A8 function member of CYP78A go_component endomembrane system|GO:0012505||IEA go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 78, subfamily A, polypeptide 8 note cytochrome P450, family 78, subfamily A, polypeptide 8 (CYP78A8); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 78, subfamily A, polypeptide 6 (TAIR:AT2G46660.1); Has 32104 Blast hits to 32001 proteins in 1725 species: Archae - 48; Bacteria - 3617; Metazoa - 11430; Fungi - 6777; Plants - 9112; Viruses - 3; Other Eukaryotes - 1117 (source: NCBI BLink). protein_id AT1G01190.1p transcript_id AT1G01190.1 protein_id AT1G01190.1p transcript_id AT1G01190.1
AT1G01190	chr1:000083045	0.0	C/83045-83671,83884-84879	AT1G01190.2 AT1G01190.2 CDS cytochrome P450, family 78, subfamily A, polypeptide 8
At1g01200	chr1:000086715	0.0	C/86715-87162,87880-88145	AT1G01200.1 CDS RAB GTPase homolog A3 [TAIR10] CDS gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A3, ATRAB-A3, ATRABA3, F6F3.1, F6F3_1, RAB GTPase homolog A3, RABA3 gene RABA3 go_component nucleus|GO:0005634|14617066|IDA go_process small GTPase mediated signal transduction|GO:0007264||IEA go_process protein transport|GO:0015031||IEA go_function GTP binding|GO:0005525||IEA go_component endosome|GO:0005768|18239134|IDA go_component cell plate|GO:0009504|18239134|IDA go_function GTP binding|GO:0005525||ISS product RAB GTPase homolog A3 note RAB GTPase homolog A3 (RABA3); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, nucleus, cell plate; EXPRESSED IN: lateral root cap, hypocotyl, root, flower, epidermis; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4C (TAIR:AT5G47960.1); Has 27164 Blast hits to 27137 proteins in 734 species: Archae - 19; Bacteria - 134; Metazoa - 14292; Fungi - 3779; Plants - 3194; Viruses - 20; Other Eukaryotes - 5726 (source: NCBI BLink). protein_id AT1G01200.1p transcript_id AT1G01200.1 protein_id AT1G01200.1p transcript_id AT1G01200.1
At1g01210	chr1:000088977	0.0	W/88977-89081,89173-89263,89405-89529	AT1G01210.1 CDS DNA-directed RNA polymerase, subunit M, archaeal [TAIR10] CDS gene_syn F6F3.2, F6F3_2 go_process transcription|GO:0006350||IEA go_process regulation of transcription|GO:0045449||IEA go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||IEA go_function DNA-directed RNA polymerase activity|GO:0003899||IEA go_function zinc ion binding|GO:0008270||IEA go_function transcription regulator activity|GO:0030528||IEA go_component nucleus|GO:0005634||ISS go_process RNA elongation|GO:0006354||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function DNA-directed RNA polymerase activity|GO:0003899||ISS product DNA-directed RNA polymerase, subunit M, archaeal note DNA-directed RNA polymerase, subunit M, archaeal; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15kDa subunit (InterPro:IPR001529), DNA-directed RNA polymerase, subunit M, archaeal (InterPro:IPR006288), DNA-directed RNA polymerase M, 15kDa subunit, conserved site (InterPro:IPR019761); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, subunit M, archaeal (TAIR:AT4G07950.1); Has 1129 Blast hits to 1129 proteins in 326 species: Archae - 242; Bacteria - 0; Metazoa - 276; Fungi - 294; Plants - 112; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink). protein_id AT1G01210.1p transcript_id AT1G01210.1 protein_id AT1G01210.1p transcript_id AT1G01210.1
AT1G01210	chr1:000088977	0.0	W/88977-89081,89173-89263,89405-89529	AT1G01210.2 AT1G01210.2 CDS DNA-directed RNA polymerase, subunit M, archaeal
AT1G01210	chr1:000088977	0.0	W/88977-89081,89173-89263,89405-89529	AT1G01210.3 AT1G01210.3 CDS DNA-directed RNA polymerase, subunit M, archaeal
At1g01220	chr1:000091750	0.0	W/91750-92070,92270-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.1 CDS L-fucokinase/GDP-L-fucose pyrophosphorylase [TAIR10] CDS gene_syn Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, AtFKGP, F6F3.3, F6F3_3, FKGP, L-fucokinase/GDP-L-fucose pyrophosphorylase gene FKGP function Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis. go_component cytoplasm|GO:0005737||IEA go_process GDP-L-fucose salvage|GO:0042352|18199744|IDA go_function galactokinase activity|GO:0004335||ISS go_function ATP binding|GO:0005524||ISS go_function fucose-1-phosphate guanylyltransferase activity|GO:0047341|18199744|IDA go_function fucokinase activity|GO:0050201|18199744|IDA product L-fucokinase/GDP-L-fucose pyrophosphorylase note L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP); FUNCTIONS IN: fucose-1-phosphate guanylyltransferase activity, fucokinase activity, ATP binding, galactokinase activity; INVOLVED IN: GDP-L-fucose salvage; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), L-fucokinase (InterPro:IPR012887), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 1878 Blast hits to 1819 proteins in 539 species: Archae - 59; Bacteria - 918; Metazoa - 155; Fungi - 3; Plants - 87; Viruses - 3; Other Eukaryotes - 653 (source: NCBI BLink). protein_id AT1G01220.1p transcript_id AT1G01220.1 protein_id AT1G01220.1p transcript_id AT1G01220.1
AT1G01220	chr1:000091750	0.0	W/91750-92070,92270-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.7 AT1G01220.7 CDS L-fucokinase/GDP-L-fucose pyrophosphorylase
AT1G01220	chr1:000092246	0.0	W/92246-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.3 AT1G01220.3 CDS L-fucokinase/GDP-L-fucose pyrophosphorylase
AT1G01220	chr1:000092246	0.0	W/92246-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.8 AT1G01220.8 CDS L-fucokinase/GDP-L-fucose pyrophosphorylase
AT1G01220	chr1:000092270	0.0	W/92270-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.4 AT1G01220.4 CDS L-fucokinase/GDP-L-fucose pyrophosphorylase
AT1G01220	chr1:000092583	0.0	W/92583-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.2 AT1G01220.2 CDS L-fucokinase/GDP-L-fucose pyrophosphorylase
AT1G01220	chr1:000092583	0.0	W/92583-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.5 AT1G01220.5 CDS L-fucokinase/GDP-L-fucose pyrophosphorylase
AT1G01220	chr1:000092583	0.0	W/92583-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.6 AT1G01220.6 CDS L-fucokinase/GDP-L-fucose pyrophosphorylase
At1g01225	chr1:000096064	0.0	W/96064-96157,96554-97242	AT1G01225.1 CDS NC domain-containing protein-related [TAIR10] CDS go_component cellular_component|GO:0005575||ND product NC domain-containing protein-related note NC domain-containing protein-related; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT4G00905.1); Has 173 Blast hits to 172 proteins in 34 species: Archae - 0; Bacteria - 24; Metazoa - 5; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G01225.1p transcript_id AT1G01225.1 protein_id AT1G01225.1p transcript_id AT1G01225.1
At1g01230	chr1:000097620	0.0	W/97620-97805,98457-98605,98908-99046	AT1G01230.1 CDS ORMDL family protein [TAIR10] CDS gene_syn F6F3.4, F6F3_4 go_component integral to membrane|GO:0016021||IEA go_component endoplasmic reticulum|GO:0005783||ISS go_process protein folding|GO:0006457||ISS go_function molecular_function|GO:0003674||ND product ORMDL family protein note ORMDL family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding; LOCATED IN: integral to membrane, endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ORMDL (InterPro:IPR007203); BEST Arabidopsis thaliana protein match is: ORMDL family protein (TAIR:AT5G42000.1); Has 538 Blast hits to 538 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 276; Fungi - 148; Plants - 90; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G01230.1p transcript_id AT1G01230.1 protein_id AT1G01230.1p transcript_id AT1G01230.1
At1g01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F633.5, F633_5, F6F3.27 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA product unknown protein note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1); Has 95 Blast hits to 78 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G01240.1p transcript_id AT1G01240.1 protein_id AT1G01240.1p transcript_id AT1G01240.1
At1g01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F633.5, F633_5, F6F3.27 product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01240.2p transcript_id AT1G01240.2 protein_id AT1G01240.2p transcript_id AT1G01240.2
At1g01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.3 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F633.5, F633_5, F6F3.27 product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01240.3p transcript_id AT1G01240.3 protein_id AT1G01240.3p transcript_id AT1G01240.3
AT1G01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.4 AT1G01240.4 CDS transmembrane protein, putative
AT1G01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.5 AT1G01240.5 CDS transmembrane protein, putative
At1g01250	chr1:000104731	0.0	C/104731-105309	AT1G01250.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn F6F3.6, F6F3_6 function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. go_component chloroplast|GO:0009507||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Integrase-type DNA-binding superfamily protein note Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1); Has 5404 Blast hits to 5361 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5399; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G01250.1p transcript_id AT1G01250.1 protein_id AT1G01250.1p transcript_id AT1G01250.1
At1g01260	chr1:000109595	0.0	W/109595-111367	AT1G01260.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F6F3.7, F6F3_7 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1); Has 3647 Blast hits to 3273 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 174; Fungi - 93; Plants - 3336; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT1G01260.1p transcript_id AT1G01260.1 protein_id AT1G01260.1p transcript_id AT1G01260.1
At1g01260	chr1:000109595	0.0	W/109595-111367	AT1G01260.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F6F3.7, F6F3_7 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1); Has 3647 Blast hits to 3273 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 174; Fungi - 93; Plants - 3336; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT1G01260.2p transcript_id AT1G01260.2 protein_id AT1G01260.2p transcript_id AT1G01260.2
At1g01260	chr1:000109595	0.0	W/109595-111367	AT1G01260.3 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F6F3.7, F6F3_7 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1). protein_id AT1G01260.3p transcript_id AT1G01260.3 protein_id AT1G01260.3p transcript_id AT1G01260.3
At1g01270	chr1:000111890	0.0	C/111890-111961	AT1G01270.1 [TAIR10] tRNA gene_syn 51947.TRNA-GLN-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Gln (anticodon: CTG) transcript_id AT1G01270.1
At1g01280	chr1:000112290	0.0	W/112290-113195,113279-113905	AT1G01280.1 CDS cytochrome P450, family 703, subfamily A, polypeptide 2 [TAIR10] CDS gene_syn cytochrome P450, family 703, subfamily A, polypeptide 2, CYP703, CYP703A2, F6F3.8, F6F3_8 gene CYP703A2 function member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis). go_component endomembrane system|GO:0012505||IEA go_process pollen wall assembly|GO:0010208|17496121|IMP go_process pollen exine formation|GO:0010584||IMP go_process medium-chain fatty acid metabolic process|GO:0051791|17496121|IDA go_process medium-chain fatty acid biosynthetic process|GO:0051792|17496121|IDA go_process sporopollenin biosynthetic process|GO:0080110|17496121|IMP go_process sporopollenin biosynthetic process|GO:0080110|17496121|TAS go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|17496121|IDA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 703, subfamily A, polypeptide 2 note cytochrome P450, family 703, subfamily A, polypeptide 2 (CYP703A2); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: medium-chain fatty acid metabolic process, pollen wall assembly, medium-chain fatty acid biosynthetic process, sporopollenin biosynthetic process, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G07990.1); Has 29652 Blast hits to 29399 proteins in 1569 species: Archae - 44; Bacteria - 2451; Metazoa - 11172; Fungi - 6019; Plants - 9091; Viruses - 3; Other Eukaryotes - 872 (source: NCBI BLink). protein_id AT1G01280.1p transcript_id AT1G01280.1 protein_id AT1G01280.1p transcript_id AT1G01280.1
At1g01290	chr1:000114299	0.0	W/114299-114433,114619-115296	AT1G01290.1 CDS cofactor of nitrate reductase and xanthine dehydrogenase 3 [TAIR10] CDS gene_syn CNX3, F6F3.9, F6F3_9, cofactor of nitrate reductase and xanthine dehydrogenase 3 gene CNX3 function COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria go_component mitochondrion|GO:0005739|7890743|ISS go_component chloroplast|GO:0009507|7890743|ISS go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777|7890743|IGI go_function catalytic activity|GO:0003824|7890743|IGI product cofactor of nitrate reductase and xanthine dehydrogenase 3 note cofactor of nitrate reductase and xanthine dehydrogenase 3 (CNX3); CONTAINS InterPro DOMAIN/s: Molybdopterin cofactor biosynthesis C (MoaC) domain (InterPro:IPR002820); Has 5242 Blast hits to 5240 proteins in 1916 species: Archae - 213; Bacteria - 3669; Metazoa - 104; Fungi - 75; Plants - 45; Viruses - 0; Other Eukaryotes - 1136 (source: NCBI BLink). protein_id AT1G01290.1p transcript_id AT1G01290.1 protein_id AT1G01290.1p transcript_id AT1G01290.1
At1g01290	chr1:000114299	0.0	W/114299-114433,114619-115296	AT1G01290.2 CDS cofactor of nitrate reductase and xanthine dehydrogenase 3 [TAIR10] CDS gene_syn CNX3, F6F3.9, F6F3_9, cofactor of nitrate reductase and xanthine dehydrogenase 3 gene CNX3 function COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria go_component mitochondrion|GO:0005739|7890743|ISS go_component chloroplast|GO:0009507|7890743|ISS go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777|7890743|IGI go_function catalytic activity|GO:0003824|7890743|IGI product cofactor of nitrate reductase and xanthine dehydrogenase 3 note cofactor of nitrate reductase and xanthine dehydrogenase 3 (CNX3); CONTAINS InterPro DOMAIN/s: Molybdopterin cofactor biosynthesis C (MoaC) domain (InterPro:IPR002820); Has 5242 Blast hits to 5240 proteins in 1916 species: Archae - 213; Bacteria - 3669; Metazoa - 104; Fungi - 75; Plants - 45; Viruses - 0; Other Eukaryotes - 1136 (source: NCBI BLink). protein_id AT1G01290.2p transcript_id AT1G01290.2 protein_id AT1G01290.2p transcript_id AT1G01290.2
At1g01300	chr1:000117065	0.0	W/117065-118522	AT1G01300.1 CDS Eukaryotic aspartyl protease family protein [TAIR10] CDS gene_syn F6F3.10, F6F3_10 go_component membrane|GO:0016020|17432890|IDA go_function aspartic-type endopeptidase activity|GO:0004190||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_process proteolysis|GO:0006508||ISS go_process response to karrikin|GO:0080167|20351290|IEP product Eukaryotic aspartyl protease family protein note Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, response to karrikin; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G61820.1); Has 3898 Blast hits to 3871 proteins in 332 species: Archae - 0; Bacteria - 0; Metazoa - 1165; Fungi - 579; Plants - 1953; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). protein_id AT1G01300.1p transcript_id AT1G01300.1 protein_id AT1G01300.1p transcript_id AT1G01300.1
At1g01305	chr1:000119429	0.0	W/119429-119854	AT1G01305.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01305.1p transcript_id AT1G01305.1 protein_id AT1G01305.1p transcript_id AT1G01305.1
At1g01310	chr1:000120221	0.0	W/120221-120946	AT1G01310.1 CDS CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein [TAIR10] CDS gene_syn F6F3.11, F6F3_11 go_component extracellular region|GO:0005576||IEA go_component extracellular region|GO:0005576||ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein note CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT3G09590.1); Has 2987 Blast hits to 2892 proteins in 368 species: Archae - 0; Bacteria - 64; Metazoa - 1591; Fungi - 333; Plants - 892; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). protein_id AT1G01310.1p transcript_id AT1G01310.1 protein_id AT1G01310.1p transcript_id AT1G01310.1
At1g01320	chr1:000121582	0.0	C/121582-123495,123579-123669,123785-123897,123992-124123,124211-124394,124499-124632,124714-124818,124921-125022,125134-125226,125329-125655,125742-125843,125936-125998,126076-126589,126686-126840,126935-127453,127532-127573,127651-127782,127868-127935,128028-128312,128479-128551,128968-129060,129853-129914,130039-130099	AT1G01320.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F6F3.12, F6F3_12 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1). protein_id AT1G01320.2p transcript_id AT1G01320.2 protein_id AT1G01320.2p transcript_id AT1G01320.2
AT1G01320	chr1:000121582	0.0	C/121582-123501,123579-123669,123785-123897,123992-124123,124211-124394,124499-124632,124714-124818,124921-125022,125134-125226,125329-125655,125742-125843,125936-125998,126076-126589,126686-126840,126935-127453,127532-127573,127651-127782,127868-127935,128028-128312,128479-128551,128968-129060,129853-129914,130039-130099	AT1G01320.3 AT1G01320.3 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g01320	chr1:000121582	0.0	C/121582-123501,123579-123669,123785-123897,123992-124123,124211-124394,124499-124632,124714-124818,124921-125046,125134-125226,125329-125655,125742-125843,125936-125998,126076-126589,126686-126840,126935-127453,127532-127573,127651-127782,127868-127935,128028-128312,128479-128551,128968-129060,129853-129914,130039-130099	AT1G01320.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F6F3.12, F6F3_12 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1); Has 12123 Blast hits to 4846 proteins in 494 species: Archae - 106; Bacteria - 3214; Metazoa - 4973; Fungi - 1823; Plants - 555; Viruses - 79; Other Eukaryotes - 1373 (source: NCBI BLink). protein_id AT1G01320.1p transcript_id AT1G01320.1 protein_id AT1G01320.1p transcript_id AT1G01320.1
AT1G01335	chr1:000130736	0.0	W/130736-130855	AT1G01335.1 AT1G01335.1 CDS auxin-responsive endogenous peptide protein
At1g01340	chr1:000132414	0.0	C/132414-132744,132824-133218,133303-133539,133641-133752,133911-134206,134289-134501,134582-135104,135188-135216	AT1G01340.2 CDS cyclic nucleotide gated channel 10 [TAIR10] CDS gene_syn ACBK1, ATCNGC10, CNGC10, F6F3.13, F6F3_13, cyclic nucleotide gated channel 10 gene CNGC10 function member of Cyclic nucleotide gated channel family go_component membrane|GO:0016020||IEA go_process ion transport|GO:0006811||IEA go_process transmembrane transport|GO:0055085||IEA go_function ion channel activity|GO:0005216||ISS go_function calmodulin binding|GO:0005516|11782485|ISS go_function calmodulin binding|GO:0005516||ISS go_function cyclic nucleotide binding|GO:0030551||ISS product cyclic nucleotide gated channel 10 note cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1). protein_id AT1G01340.2p transcript_id AT1G01340.2 protein_id AT1G01340.2p transcript_id AT1G01340.2
At1g01340	chr1:000132414	0.0	C/132414-132744,132824-133218,133303-133539,133641-133752,133911-134206,134289-134501,134582-135118	AT1G01340.1 CDS cyclic nucleotide gated channel 10 [TAIR10] CDS gene_syn ACBK1, ATCNGC10, CNGC10, F6F3.13, F6F3_13, cyclic nucleotide gated channel 10 gene CNGC10 function member of Cyclic nucleotide gated channel family go_component membrane|GO:0016020||IEA go_process ion transport|GO:0006811||IEA go_process transmembrane transport|GO:0055085||IEA go_function ion channel activity|GO:0005216||ISS go_function calmodulin binding|GO:0005516|11782485|ISS go_function calmodulin binding|GO:0005516||ISS go_function cyclic nucleotide binding|GO:0030551||ISS product cyclic nucleotide gated channel 10 note cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0; Bacteria - 35; Metazoa - 1554; Fungi - 48; Plants - 1027; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink). protein_id AT1G01340.1p transcript_id AT1G01340.1 protein_id AT1G01340.1p transcript_id AT1G01340.1
At1g01350	chr1:000136732	0.0	W/136732-136816,136935-137758,137848-137970	AT1G01350.1 CDS Zinc finger (CCCH-type/C3HC4-type RING finger) family protein [TAIR10] CDS gene_syn F6F3.14, F6F3.15, F6F3_14, F6F3_15 go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA go_function nucleic acid binding|GO:0003676||ISS product Zinc finger (CCCH-type/C3HC4-type RING finger) family protein note Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01350.1p transcript_id AT1G01350.1 protein_id AT1G01350.1p transcript_id AT1G01350.1
At1g01355	chr1:000138513	0.0	W/138513-138541,138597-138778,138863-139114,139203-139345,139488-139568	AT1G01355.1 CDS Putative endonuclease or glycosyl hydrolase [TAIR10] CDS go_component intracellular|GO:0005622||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND product Putative endonuclease or glycosyl hydrolase note Putative endonuclease or glycosyl hydrolase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G35640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01355.1p transcript_id AT1G01355.1 protein_id AT1G01355.1p transcript_id AT1G01355.1
AT1G01355	chr1:000138513	0.0	W/138513-138541,138597-138778,138875-139114,139203-139345,139488-139568	AT1G01355.3 AT1G01355.3 CDS Putative endonuclease or glycosyl hydrolase
AT1G01355	chr1:000138722	0.0	W/138722-138778,138875-138914,138989-139114,139203-139345,139488-139568	AT1G01355.2 AT1G01355.2 CDS Putative endonuclease or glycosyl hydrolase
At1g01360	chr1:000142138	0.0	W/142138-142281,142424-142639,142711-142914	AT1G01360.1 CDS regulatory component of ABA receptor 1 [TAIR10] CDS gene_syn F6F3.16, F6F3_16, PYL9, PYRABACTIN RESISTANCE 1-LIKE 9, RCAR1, regulatory component of ABA receptor 1 gene RCAR1 function Encodes RCAR1 (regulatory components of ABA receptor). Interacts with and regulates the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2. Functions as abscisic acid sensor. go_component cellular_component|GO:0005575||ND go_function abscisic acid binding|GO:0010427|19407143|IDA product regulatory component of ABA receptor 1 note regulatory component of ABA receptor 1 (RCAR1); CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: PYR1-like 7 (TAIR:AT4G01026.1); Has 395 Blast hits to 395 proteins in 28 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01360.1p transcript_id AT1G01360.1 protein_id AT1G01360.1p transcript_id AT1G01360.1
At1g01370	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.1 CDS Histone superfamily protein [TAIR10] CDS gene_syn CENH3, CENTROMERIC HISTONE H3, F6F3.17, F6F3_17, HTR12 gene HTR12 function Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells. go_function DNA binding|GO:0003677||IEA go_component chromosome, centromeric region|GO:0000775|12034896|IDA go_component nucleus|GO:0005634|17555967|IDA go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note HTR12; FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: male-gamete-specific histone H3 (TAIR:AT1G19890.1); Has 14361 Blast hits to 14354 proteins in 7190 species: Archae - 0; Bacteria - 0; Metazoa - 10494; Fungi - 2020; Plants - 1256; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink). protein_id AT1G01370.1p transcript_id AT1G01370.1 protein_id AT1G01370.1p transcript_id AT1G01370.1
At1g01370	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.2 CDS Histone superfamily protein [TAIR10] CDS gene_syn CENH3, CENTROMERIC HISTONE H3, F6F3.17, F6F3_17, HTR12 gene HTR12 function Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells. go_function DNA binding|GO:0003677||IEA go_component chromosome, centromeric region|GO:0000775|12034896|IDA go_component nucleus|GO:0005634|17555967|IDA go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note HTR12; FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: male-gamete-specific histone H3 (TAIR:AT1G19890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01370.2p transcript_id AT1G01370.2 protein_id AT1G01370.2p transcript_id AT1G01370.2
AT1G01370	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.3 AT1G01370.3 CDS Histone superfamily protein
AT1G01370	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.4 AT1G01370.4 CDS Histone superfamily protein
AT1G01380	chr1:000147267	0.0	W/147267-147333,147452-147528,147644-147694	AT1G01380.3 AT1G01380.3 CDS Homeodomain-like superfamily protein
At1g01380	chr1:000147267	0.0	W/147267-147333,147452-147539,147644-147740	AT1G01380.1 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn ENHANCER OF TRY AND CPC 1, ETC1, F6F3.18, F6F3_18 gene ETC1 function ETC1 is involved in trichome and root hair patterning in Arabidopsis. go_process regulation of transcription|GO:0045449||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Homeodomain-like superfamily protein note ENHANCER OF TRY AND CPC 1 (ETC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: shoot apex, hypocotyl, root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: CAPRICE-like MYB3 (TAIR:AT4G01060.1); Has 2220 Blast hits to 2220 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2207; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). protein_id AT1G01380.1p transcript_id AT1G01380.1 protein_id AT1G01380.1p transcript_id AT1G01380.1
AT1G01380	chr1:000147267	0.0	W/147267-147333,147452-147567	AT1G01380.2 AT1G01380.2 CDS Homeodomain-like superfamily protein
At1g01390	chr1:000148319	0.0	C/148319-149761	AT1G01390.1 CDS UDP-Glycosyltransferase superfamily protein [TAIR10] CDS gene_syn F6F3.19, F6F3_19 go_process metabolic process|GO:0008152||IEA go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-Glycosyltransferase superfamily protein note UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7970 Blast hits to 7908 proteins in 429 species: Archae - 0; Bacteria - 359; Metazoa - 2438; Fungi - 37; Plants - 5024; Viruses - 48; Other Eukaryotes - 64 (source: NCBI BLink). protein_id AT1G01390.1p transcript_id AT1G01390.1 protein_id AT1G01390.1p transcript_id AT1G01390.1
AT1G01390	chr1:000148319	0.0	C/148319-149812	AT1G01390.2 AT1G01390.2 CDS UDP-Glycosyltransferase superfamily protein
AT1G01395	chr1:000150013	0.0	C/150013-150131,150193-150388	AT1G01395.1 AT1G01395.1 CDS hypothetical protein
At1g01400	chr1:000151158	0.0	C/151158-151298,151393-151731,151932-152002,152086-152149	AT1G01400.1 CDS hypothetical protein [TAIR10] CDS gene_syn F6F3.20, F6F3_20 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 1; Plants - 13; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G01400.1p transcript_id AT1G01400.1 protein_id AT1G01400.1p transcript_id AT1G01400.1
At1g01410	chr1:000153113	0.0	W/153113-154198	AT1G01410.1 CDS pumilio 22 [TAIR10] CDS gene_syn APUM22, F6F3.21, F6F3_21, PUM22, pumilio 22 gene PUM22 function Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. go_function RNA binding|GO:0003723||IEA go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product pumilio 22 note pumilio 22 (PUM22); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G64490.1); Has 304 Blast hits to 271 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 65; Plants - 186; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). protein_id AT1G01410.1p transcript_id AT1G01410.1 protein_id AT1G01410.1p transcript_id AT1G01410.1
At1g01420	chr1:000154566	0.0	C/154566-156011	AT1G01420.1 CDS UDP-glucosyl transferase 72B3 [TAIR10] CDS gene_syn F6F3.22, F6F3_22, UDP-glucosyl transferase 72B3, UGT72B3 gene UGT72B3 go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA product UDP-glucosyl transferase 72B3 note UDP-glucosyl transferase 72B3 (UGT72B3); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G01390.1); Has 7961 Blast hits to 7896 proteins in 480 species: Archae - 0; Bacteria - 474; Metazoa - 2294; Fungi - 32; Plants - 5027; Viruses - 70; Other Eukaryotes - 64 (source: NCBI BLink). protein_id AT1G01420.1p transcript_id AT1G01420.1 protein_id AT1G01420.1p transcript_id AT1G01420.1
AT1G01420	chr1:000154566	0.0	C/154566-156020	AT1G01420.2 AT1G01420.2 CDS UDP-glucosyl transferase 72B3
At1g01430	chr1:000156953	0.0	C/156953-157756,157829-158112,158254-158536	AT1G01430.1 CDS TRICHOME BIREFRINGENCE-LIKE 25 [TAIR10] CDS gene_syn F6F3.23, F6F3_23, TBL25, TRICHOME BIREFRINGENCE-LIKE 25 gene TBL25 function Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product TRICHOME BIREFRINGENCE-LIKE 25 note TRICHOME BIREFRINGENCE-LIKE 25 (TBL25); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26 (TAIR:AT4G01080.1); Has 1353 Blast hits to 1335 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 1340; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G01430.1p transcript_id AT1G01430.1 protein_id AT1G01430.1p transcript_id AT1G01430.1
At1g01440	chr1:000159935	0.0	C/159935-159992,160079-160302,160418-160478,160568-162219	AT1G01440.1 CDS hypothetical protein (DUF3133) [TAIR10] CDS gene_syn F6F3.24, F6F3_24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF3133) note Protein of unknown function (DUF3133); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT4G01090.1); Has 702 Blast hits to 662 proteins in 107 species: Archae - 0; Bacteria - 15; Metazoa - 235; Fungi - 59; Plants - 328; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). protein_id AT1G01440.1p transcript_id AT1G01440.1 protein_id AT1G01440.1p transcript_id AT1G01440.1
At1g01448	chr1:000163419	0.0	W/163419-163516,163934-164135,164225-164576	AT1G01448.3 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G01450 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G01448.3
At1g01448	chr1:000163431	0.0	W/163431-163516,163934-164103,164225-164686,164771-165380,165449-166239	AT1G01448.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G01450 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G01448.1
At1g01448	chr1:000163432	0.0	W/163432-163516,163617-164107,164230-164687	AT1G01448.2 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G01450 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G01448.2
At1g01450	chr1:000164105	0.0	C/164105-165517	AT1G01450.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F22L4.1, F22L4_1 go_process protein amino acid phosphorylation|GO:0006468||IEA go_component cellular_component|GO:0005575||ND go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT1G64300.2); Has 73829 Blast hits to 73194 proteins in 2427 species: Archae - 72; Bacteria - 7086; Metazoa - 29204; Fungi - 5761; Plants - 19826; Viruses - 200; Other Eukaryotes - 11680 (source: NCBI BLink). protein_id AT1G01450.1p transcript_id AT1G01450.1 protein_id AT1G01450.1p transcript_id AT1G01450.1
At1g01453	chr1:000166853	0.0	C/166853-166871,167014-167798	AT1G01453.1 CDS late embryogenesis abundant hydroxyproline-rich glycoprotein family protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01453.1p transcript_id AT1G01453.1 protein_id AT1G01453.1p transcript_id AT1G01453.1
At1g01453	chr1:000166929	0.0	C/166929-167798	AT1G01453.2 CDS late embryogenesis abundant hydroxyproline-rich glycoprotein family protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01453.2p transcript_id AT1G01453.2 protein_id AT1G01453.2p transcript_id AT1G01453.2
At1g01460	chr1:000169115	0.0	W/169115-169257,169347-169509,169600-169710,169806-169993,170071-170162,170266-170313,170412-170507,170622-170760,170851-171154	AT1G01460.1 CDS Phosphatidylinositol-4-phosphate 5-kinase, core [TAIR10] CDS gene_syn ATPIPK11, F22L4.2, F22L4_2, PIPK11 gene PIPK11 function Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. go_process phosphatidylinositol metabolic process|GO:0046488||IEA go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA go_component cellular_component|GO:0005575||ND go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS product Phosphatidylinositol-4-phosphate 5-kinase, core note PIPK11; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol phosphate kinase 10 (TAIR:AT4G01190.1); Has 2109 Blast hits to 1621 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 980; Fungi - 317; Plants - 416; Viruses - 0; Other Eukaryotes - 394 (source: NCBI BLink). protein_id AT1G01460.1p transcript_id AT1G01460.1 protein_id AT1G01460.1p transcript_id AT1G01460.1
At1g01470	chr1:000172295	0.0	C/172295-172544,172621-172826	AT1G01470.1 CDS Late embryogenesis abundant protein [TAIR10] CDS gene_syn F22L4.3, F22L4_3, LATE EMBRYOGENESIS ABUNDANT 14, LEA14, LIGHT STRESS-REGULATED 3, LSR3 gene LEA14 function Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. go_component cellular_component|GO:0005575||ND go_process response to desiccation|GO:0009269||ISS go_process response to wounding|GO:0009611|12068110|IEP go_process response to high light intensity|GO:0009644|11683875|IEP go_process embryo development ending in seed dormancy|GO:0009793||ISS go_process defense response to fungus|GO:0050832|19656045|IEP go_function molecular_function|GO:0003674||ND product Late embryogenesis abundant protein note LATE EMBRYOGENESIS ABUNDANT 14 (LEA14); CONTAINS InterPro DOMAIN/s: Water stress and hypersensitive response domain (InterPro:IPR013990), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (TAIR:AT2G46140.1); Has 340 Blast hits to 340 proteins in 93 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 329; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G01470.1p transcript_id AT1G01470.1 protein_id AT1G01470.1p transcript_id AT1G01470.1
At1g01471	chr1:000173251	0.0	W/173251-173466	AT1G01471.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01471.1p transcript_id AT1G01471.1 protein_id AT1G01471.1p transcript_id AT1G01471.1
At1g01480	chr1:000175862	0.0	W/175862-176032,176207-176338,176592-176752,177025-178051	AT1G01480.1 CDS 1-amino-cyclopropane-1-carboxylate synthase 2 [TAIR10] CDS gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE, 1-amino-cyclopropane-1-carboxylate synthase 2, ACS2, AT-ACC2, EC 4.4.1.14, F22L4.4, F22L4_4, S-ADENOSYL-L-METHIONINE METHYLTHIOADENOSINE-LYASE gene ACS2 function a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library. go_component cellular_component|GO:0005575||ND go_process ethylene biosynthetic process|GO:0009693|1357670|TAS go_process ethylene biosynthetic process|GO:0009693|1438312|TAS go_process ethylene biosynthetic process|GO:0009693|16311726|TAS go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|8566772|IDA product 1-amino-cyclopropane-1-carboxylate synthase 2 note 1-amino-cyclopropane-1-carboxylate synthase 2 (ACS2); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1); Has 30194 Blast hits to 30192 proteins in 2936 species: Archae - 881; Bacteria - 20730; Metazoa - 650; Fungi - 807; Plants - 1338; Viruses - 0; Other Eukaryotes - 5788 (source: NCBI BLink). protein_id AT1G01480.1p transcript_id AT1G01480.1 protein_id AT1G01480.1p transcript_id AT1G01480.1
At1g01480	chr1:000176607	0.0	W/176607-176752,177025-178051	AT1G01480.2 CDS 1-amino-cyclopropane-1-carboxylate synthase 2 [TAIR10] CDS gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE, 1-amino-cyclopropane-1-carboxylate synthase 2, ACS2, AT-ACC2, EC 4.4.1.14, F22L4.4, F22L4_4, S-ADENOSYL-L-METHIONINE METHYLTHIOADENOSINE-LYASE gene ACS2 function a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library. go_component cellular_component|GO:0005575||ND go_process ethylene biosynthetic process|GO:0009693|1357670|TAS go_process ethylene biosynthetic process|GO:0009693|1438312|TAS go_process ethylene biosynthetic process|GO:0009693|16311726|TAS go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|8566772|IDA product 1-amino-cyclopropane-1-carboxylate synthase 2 note 1-amino-cyclopropane-1-carboxylate synthase 2 (ACS2); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1); Has 28365 Blast hits to 28364 proteins in 2923 species: Archae - 821; Bacteria - 19365; Metazoa - 634; Fungi - 793; Plants - 1286; Viruses - 0; Other Eukaryotes - 5466 (source: NCBI BLink). protein_id AT1G01480.2p transcript_id AT1G01480.2 protein_id AT1G01480.2p transcript_id AT1G01480.2
AT1G01490	chr1:000180401	0.0	C/180401-180835	AT1G01490.3 AT1G01490.3 CDS Heavy metal transport/detoxification superfamily protein
AT1G01490	chr1:000180401	0.0	C/180401-180852,181347-181422,181594-181680	AT1G01490.4 AT1G01490.4 CDS Heavy metal transport/detoxification superfamily protein
At1g01490	chr1:000180401	0.0	C/180401-180852,181347-181422,182061-182066	AT1G01490.1 CDS Heavy metal transport/detoxification superfamily protein [TAIR10] CDS gene_syn F22L4.5, F22L4_5 go_process metal ion transport|GO:0030001||IEA go_function metal ion binding|GO:0046872||IEA go_component cellular_component|GO:0005575||ND go_function metal ion binding|GO:0046872||ISS product Heavy metal transport/detoxification superfamily protein note Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47; Bacteria - 875; Metazoa - 1731; Fungi - 337; Plants - 1157; Viruses - 96; Other Eukaryotes - 2840 (source: NCBI BLink). protein_id AT1G01490.1p transcript_id AT1G01490.1 protein_id AT1G01490.1p transcript_id AT1G01490.1
At1g01490	chr1:000180401	0.0	C/180401-180852,181347-181422,182061-182066	AT1G01490.2 CDS Heavy metal transport/detoxification superfamily protein [TAIR10] CDS gene_syn F22L4.5, F22L4_5 go_process metal ion transport|GO:0030001||IEA go_function metal ion binding|GO:0046872||IEA go_component cellular_component|GO:0005575||ND go_function metal ion binding|GO:0046872||ISS product Heavy metal transport/detoxification superfamily protein note Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01490.2p transcript_id AT1G01490.2 protein_id AT1G01490.2p transcript_id AT1G01490.2
At1g01500	chr1:000185260	0.0	W/185260-186009,186340-186573	AT1G01500.1 CDS Erythronate-4-phosphate dehydrogenase family protein [TAIR10] CDS gene_syn F22L4.17, F22L4_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Erythronate-4-phosphate dehydrogenase family protein note Erythronate-4-phosphate dehydrogenase family protein; BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G19400.2); Has 143 Blast hits to 143 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01500.1p transcript_id AT1G01500.1 protein_id AT1G01500.1p transcript_id AT1G01500.1
At1g01510	chr1:000187235	0.0	W/187235-187822,188011-188176,188284-188414,188529-189320,189417-189464,189562-189675,189765-189836	AT1G01510.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn AN, ANGUSTIFOLIA, F22L4.6, F22L4_6 gene AN function Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction. go_component cellular_component|GO:0005575||ND go_process microtubule cytoskeleton organization|GO:0000226|11889033|IMP go_process leaf morphogenesis|GO:0009965|8625845|IMP go_process monopolar cell growth|GO:0042814|8625845|IMP go_function protein binding|GO:0005515|11889033|IPI product NAD(P)-binding Rossmann-fold superfamily protein note ANGUSTIFOLIA (AN); CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 20556 Blast hits to 20427 proteins in 2617 species: Archae - 372; Bacteria - 13694; Metazoa - 624; Fungi - 929; Plants - 529; Viruses - 5; Other Eukaryotes - 4403 (source: NCBI BLink). protein_id AT1G01510.1p transcript_id AT1G01510.1 protein_id AT1G01510.1p transcript_id AT1G01510.1
At1g01520	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191889,191967-192026,192107-192139	AT1G01520.1 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn F22L4.18, F22L4_18 go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to salt stress|GO:0009651|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1311 Blast hits to 1300 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 0; Plants - 1067; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). protein_id AT1G01520.1p transcript_id AT1G01520.1 protein_id AT1G01520.1p transcript_id AT1G01520.1
AT1G01520	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191889,191967-192059	AT1G01520.3 AT1G01520.3 CDS Homeodomain-like superfamily protein
AT1G01520	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191895	AT1G01520.2 AT1G01520.2 CDS Homeodomain-like superfamily protein
AT1G01520	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191895	AT1G01520.4 AT1G01520.4 CDS Homeodomain-like superfamily protein
AT1G01520	chr1:000191181	0.0	W/191181-191475,191579-191692,191780-191889,191967-192026,192107-192139	AT1G01520.5 AT1G01520.5 CDS Homeodomain-like superfamily protein
At1g01530	chr1:000192640	0.0	C/192640-193071,193351-193662	AT1G01530.1 CDS AGAMOUS-like 28 [TAIR10] CDS gene_syn AGAMOUS-like 28, AGL28, F22L4.7, F22L4_7 gene AGL28 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS product AGAMOUS-like 28 note AGAMOUS-like 28 (AGL28); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, embryo, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 23 (TAIR:AT1G65360.1); Has 6009 Blast hits to 6009 proteins in 738 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 306; Plants - 4996; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). protein_id AT1G01530.1p transcript_id AT1G01530.1 protein_id AT1G01530.1p transcript_id AT1G01530.1
At1g01540	chr1:000195980	0.0	W/195980-196542,197115-197219,197300-197422,197501-197671,197775-197904,197974-198183,198267-198383	AT1G01540.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F22L4.8, F22L4_8 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G01330.1); Has 118949 Blast hits to 117566 proteins in 4483 species: Archae - 118; Bacteria - 14365; Metazoa - 43793; Fungi - 9783; Plants - 32976; Viruses - 455; Other Eukaryotes - 17459 (source: NCBI BLink). protein_id AT1G01540.2p transcript_id AT1G01540.2 protein_id AT1G01540.2p transcript_id AT1G01540.2
At1g01540	chr1:000195980	0.0	W/195980-196542,197115-197219,197300-197422,197501-197671,197775-197973	AT1G01540.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F22L4.8, F22L4_8 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G01330.2); Has 117942 Blast hits to 116606 proteins in 4399 species: Archae - 110; Bacteria - 14062; Metazoa - 43660; Fungi - 9737; Plants - 32599; Viruses - 442; Other Eukaryotes - 17332 (source: NCBI BLink). protein_id AT1G01540.1p transcript_id AT1G01540.1 protein_id AT1G01540.1p transcript_id AT1G01540.1
At1g01550	chr1:000200526	0.0	W/200526-201575	AT1G01550.1 CDS BPS1-like protein (DUF793) [TAIR10] CDS gene_syn BPS1, BYPASS 1, F22L4.9, F22L4_9 gene BPS1 function BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signal go_component plasma membrane|GO:0005886|17317660|IDA go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF793) note BYPASS 1 (BPS1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 170 Blast hits to 170 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G01550.1p transcript_id AT1G01550.1 protein_id AT1G01550.1p transcript_id AT1G01550.1
At1g01550	chr1:000200526	0.0	W/200526-201575	AT1G01550.2 CDS BPS1-like protein (DUF793) [TAIR10] CDS gene_syn BPS1, BYPASS 1, F22L4.9, F22L4_9 gene BPS1 function BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signal go_component plasma membrane|GO:0005886|17317660|IDA go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF793) note BYPASS 1 (BPS1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01550.2p transcript_id AT1G01550.2 protein_id AT1G01550.2p transcript_id AT1G01550.2
At1g01560	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203599,203760-203943,204029-204189	AT1G01560.2 CDS MAP kinase 11 [TAIR10] CDS gene_syn ATMPK11, F22L4.10, F22L4_10, MAP kinase 11, MPK11 gene MPK11 function member of MAP Kinase go_component cellular_component|GO:0005575||ND go_process signal transduction|GO:0007165|12119167|IC go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP go_function MAP kinase activity|GO:0004707|11544109|ISS go_function MAP kinase activity|GO:0004707|12119167|ISS go_function kinase activity|GO:0016301||ISS product MAP kinase 11 note MAP kinase 11 (MPK11); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), JNK MAP kinase (InterPro:IPR008351), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01560.2p transcript_id AT1G01560.2 protein_id AT1G01560.2p transcript_id AT1G01560.2
AT1G01560	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203599,203760-204035	AT1G01560.3 AT1G01560.3 CDS MAP kinase 11
At1g01560	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203662	AT1G01560.1 CDS MAP kinase 11 [TAIR10] CDS gene_syn ATMPK11, F22L4.10, F22L4_10, MAP kinase 11, MPK11 gene MPK11 function member of MAP Kinase go_component cellular_component|GO:0005575||ND go_process signal transduction|GO:0007165|12119167|IC go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP go_function MAP kinase activity|GO:0004707|11544109|ISS go_function MAP kinase activity|GO:0004707|12119167|ISS go_function kinase activity|GO:0016301||ISS product MAP kinase 11 note MAP kinase 11 (MPK11); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1); Has 120594 Blast hits to 119420 proteins in 4621 species: Archae - 98; Bacteria - 12299; Metazoa - 46324; Fungi - 12052; Plants - 29649; Viruses - 464; Other Eukaryotes - 19708 (source: NCBI BLink). protein_id AT1G01560.1p transcript_id AT1G01560.1 protein_id AT1G01560.1p transcript_id AT1G01560.1
AT1G01560	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203662	AT1G01560.4 AT1G01560.4 CDS MAP kinase 11
AT1G01570	chr1:000205083	0.0	W/205083-205949,206692-207243,207325-207435	AT1G01570.2 AT1G01570.2 CDS transferring glycosyl group transferase (DUF604)
At1g01570	chr1:000205176	0.0	W/205176-205949,206692-207243,207325-207435	AT1G01570.1 CDS transferring glycosyl group transferase (DUF604) [TAIR10] CDS gene_syn F22L4.11, F22L4_11 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Protein of unknown function (DUF604) note FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G00300.1); Has 558 Blast hits to 547 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 169; Plants - 281; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G01570.1p transcript_id AT1G01570.1 protein_id AT1G01570.1p transcript_id AT1G01570.1
AT1G01580	chr1:000209161	0.0	W/209161-209608,209764-209866,209950-210144,210385-210619,211052-211379,211474-211717,211855-212573,212671-212810	AT1G01580.2 AT1G01580.2 CDS ferric reduction oxidase 2
At1g01580	chr1:000209395	0.0	W/209395-209608,209764-209866,209950-210144,210385-210619,211052-211379,211474-211717,211855-212573,212671-212810	AT1G01580.1 CDS ferric reduction oxidase 2 [TAIR10] CDS gene_syn ATFRO2, F22L4.12, F22L4_12, FERRIC CHELATE REDUCTASE DEFECTIVE 1, FERRIC REDUCTION OXIDASE 2, FRD1, FRO2, ferric reduction oxidase 2 gene FRO2 function Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface. It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism. Coordinately regulated with IRT1, the major transporter responsible for high-affinity iron uptake from the soil, at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals. Its transcription is regulated by FIT1. go_component plasma membrane|GO:0005886|16813577|IDA go_component membrane|GO:0016020||ISS go_process response to bacterium|GO:0009617|19121106|IEP go_process response to cytokinin stimulus|GO:0009735|18397377|IEP go_process cellular response to iron ion starvation|GO:0010106|16813577|IEP go_process iron chelate transport|GO:0015688|10067892|IMP go_process iron ion homeostasis|GO:0055072|18697928|IMP go_function ferric-chelate reductase activity|GO:0000293|10067892|IMP go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA go_function ferric-chelate reductase activity|GO:0000293||ISS product ferric reduction oxidase 2 note ferric reduction oxidase 2 (FRO2); CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 1 (TAIR:AT1G01590.1); Has 2711 Blast hits to 2707 proteins in 388 species: Archae - 5; Bacteria - 307; Metazoa - 560; Fungi - 1180; Plants - 483; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink). protein_id AT1G01580.1p transcript_id AT1G01580.1 protein_id AT1G01580.1p transcript_id AT1G01580.1
At1g01590	chr1:000214229	0.0	W/214229-214406,214480-214582,214697-214897,215317-215554,215633-215960,216044-216293,216414-217090,217165-217304	AT1G01590.1 CDS ferric reduction oxidase 1 [TAIR10] CDS gene_syn ATFRO1, F22L4.13, F22L4_13, FERRIC REDUCTION OXIDASE 1, FRO1, ferric reduction oxidase 1 gene FRO1 function Encodes a ferric-chelate reductase that is expressed at extremely low levels in Fe deficiency-induced seedlings. go_component integral to membrane|GO:0016021||IEA go_process oxidation reduction|GO:0055114||IEA go_component membrane|GO:0016020||ISS go_function ferric-chelate reductase activity|GO:0000293|10067892|IMP go_function ferric-chelate reductase activity|GO:0000293||ISS product ferric reduction oxidase 1 note ferric reduction oxidase 1 (FRO1); FUNCTIONS IN: ferric-chelate reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 3 (TAIR:AT1G23020.2); Has 2645 Blast hits to 2634 proteins in 373 species: Archae - 2; Bacteria - 275; Metazoa - 567; Fungi - 1143; Plants - 485; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink). protein_id AT1G01590.1p transcript_id AT1G01590.1 protein_id AT1G01590.1p transcript_id AT1G01590.1
At1g01600	chr1:000219200	0.0	W/219200-219621,219752-220994	AT1G01600.1 CDS cytochrome P450, family 86, subfamily A, polypeptide 4 [TAIR10] CDS gene_syn cytochrome P450, family 86, subfamily A, polypeptide 4, CYP86A4, F22L4.14, F22L4_14 gene CYP86A4 function Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. go_process fatty acid metabolic process|GO:0006631|15709153|IDA go_function alkane 1-monooxygenase activity|GO:0018685|15709153|IDA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 86, subfamily A, polypeptide 4 note cytochrome P450, family 86, subfamily A, polypeptide 4 (CYP86A4); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily A, polypeptide 2 (TAIR:AT4G00360.1); Has 27858 Blast hits to 27767 proteins in 1485 species: Archae - 44; Bacteria - 2493; Metazoa - 10417; Fungi - 6140; Plants - 7807; Viruses - 3; Other Eukaryotes - 954 (source: NCBI BLink). protein_id AT1G01600.1p transcript_id AT1G01600.1 protein_id AT1G01600.1p transcript_id AT1G01600.1
At1g01610	chr1:000221950	0.0	C/221950-222359,222622-223096,223551-223866,223945-224255	AT1G01610.1 CDS glycerol-3-phosphate acyltransferase 4 [TAIR10] CDS gene_syn ATGPAT4, F22L4.15, F22L4_15, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4, GPAT4, glycerol-3-phosphate acyltransferase 4 gene GPAT4 function Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8. go_process metabolic process|GO:0008152||ISS go_process cutin biosynthetic process|GO:0010143|17991776|IMP go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|12897259|IGI go_function acyltransferase activity|GO:0008415||ISS product glycerol-3-phosphate acyltransferase 4 note glycerol-3-phosphate acyltransferase 4 (GPAT4); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: metabolic process, cutin biosynthetic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 8 (TAIR:AT4G00400.1); Has 410 Blast hits to 396 proteins in 34 species: Archae - 0; Bacteria - 20; Metazoa - 10; Fungi - 0; Plants - 373; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G01610.1p transcript_id AT1G01610.1 protein_id AT1G01610.1p transcript_id AT1G01610.1
At1g01620	chr1:000225986	0.0	C/225986-226081,226171-226311,226396-226691,226849-226960	AT1G01620.2 CDS plasma membrane intrinsic protein 1C [TAIR10] CDS gene_syn F22L4.16, F22L4_16, PIP1;3, PIP1C, PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, TMP-B, plasma membrane intrinsic protein 1C gene PIP1C function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_component plasma membrane|GO:0005886|7920711|IDA go_component plasma membrane|GO:0005886|7920711|TAS go_component membrane|GO:0016020||ISS go_process transport|GO:0006810||ISS go_process water transport|GO:0006833|7920711|IDA go_process response to water deprivation|GO:0009414|16235111|IEP go_process response to salt stress|GO:0009651|16183846|IEP go_function water channel activity|GO:0015250|7920711|IDA go_function water channel activity|GO:0015250||ISS product plasma membrane intrinsic protein 1C note plasma membrane intrinsic protein 1C (PIP1C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10489 Blast hits to 10479 proteins in 2194 species: Archae - 80; Bacteria - 5080; Metazoa - 1452; Fungi - 437; Plants - 2488; Viruses - 2; Other Eukaryotes - 950 (source: NCBI BLink). protein_id AT1G01620.2p transcript_id AT1G01620.2 protein_id AT1G01620.2p transcript_id AT1G01620.2
At1g01620	chr1:000225986	0.0	C/225986-226081,226171-226311,226396-226691,226849-227176	AT1G01620.1 CDS plasma membrane intrinsic protein 1C [TAIR10] CDS gene_syn F22L4.16, F22L4_16, PIP1;3, PIP1C, PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, TMP-B, plasma membrane intrinsic protein 1C gene PIP1C function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. go_component plasma membrane|GO:0005886|15060130|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component membrane|GO:0016020|17432890|IDA go_component plasma membrane|GO:0005886|7920711|IDA go_component plasma membrane|GO:0005886|7920711|TAS go_component membrane|GO:0016020||ISS go_process transport|GO:0006810||ISS go_process water transport|GO:0006833|7920711|IDA go_process response to water deprivation|GO:0009414|16235111|IEP go_process response to salt stress|GO:0009651|16183846|IEP go_function water channel activity|GO:0015250|7920711|IDA go_function water channel activity|GO:0015250||ISS product plasma membrane intrinsic protein 1C note plasma membrane intrinsic protein 1C (PIP1C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10781 Blast hits to 10762 proteins in 2222 species: Archae - 88; Bacteria - 5165; Metazoa - 1470; Fungi - 448; Plants - 2514; Viruses - 2; Other Eukaryotes - 1094 (source: NCBI BLink). protein_id AT1G01620.1p transcript_id AT1G01620.1 protein_id AT1G01620.1p transcript_id AT1G01620.1
At1g01630	chr1:000229206	0.0	W/229206-229343,229429-229724,229829-229934,230349-230459,230559-230675	AT1G01630.1 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn T1N6.1, T1N6_1 go_component cellular_component|GO:0005575||ND go_process transport|GO:0006810||ISS go_function transporter activity|GO:0005215||ISS product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G14820.3); Has 3015 Blast hits to 3010 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 1124; Fungi - 666; Plants - 866; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink). protein_id AT1G01630.1p transcript_id AT1G01630.1 protein_id AT1G01630.1p transcript_id AT1G01630.1
At1g01640	chr1:000231164	0.0	C/231164-231655,231784-231852	AT1G01640.2 CDS BTB/POZ domain-containing protein [TAIR10] CDS gene_syn T1N6.2, T1N6_2 function Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication). go_component cellular_component|GO:0005575||ND go_process flower development|GO:0009908||IMP go_function protein binding|GO:0005515|15659098|IPI product BTB/POZ domain-containing protein note BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G56230.1); Has 4339 Blast hits to 4265 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 3351; Fungi - 8; Plants - 720; Viruses - 35; Other Eukaryotes - 225 (source: NCBI BLink). protein_id AT1G01640.2p transcript_id AT1G01640.2 protein_id AT1G01640.2p transcript_id AT1G01640.2
At1g01640	chr1:000231164	0.0	C/231164-231655,231784-231915	AT1G01640.1 CDS BTB/POZ domain-containing protein [TAIR10] CDS gene_syn T1N6.2, T1N6_2 function Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication). go_component cellular_component|GO:0005575||ND go_process flower development|GO:0009908||IMP go_function protein binding|GO:0005515|15659098|IPI product BTB/POZ domain-containing protein note BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G56230.1); Has 4339 Blast hits to 4265 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 3351; Fungi - 8; Plants - 720; Viruses - 35; Other Eukaryotes - 225 (source: NCBI BLink). protein_id AT1G01640.1p transcript_id AT1G01640.1 protein_id AT1G01640.1p transcript_id AT1G01640.1
At1g01650	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236537	AT1G01650.2 CDS SIGNAL PEPTIDE PEPTIDASE-LIKE 4 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, ATSPPL4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SPPL4, T1N6.3, T1N6_3 gene SPPL4 go_component integral to membrane|GO:0016021||IEA go_function aspartic-type endopeptidase activity|GO:0004190||IEA go_process proteolysis|GO:0006508||ISS go_function peptidase activity|GO:0008233||ISS product SIGNAL PEPTIDE PEPTIDASE-LIKE 4 note SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01650.2p transcript_id AT1G01650.2 protein_id AT1G01650.2p transcript_id AT1G01650.2
AT1G01650	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236537	AT1G01650.3 AT1G01650.3 CDS SIGNAL PEPTIDE PEPTIDASE-LIKE 4
AT1G01650	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236537	AT1G01650.4 AT1G01650.4 CDS SIGNAL PEPTIDE PEPTIDASE-LIKE 4
At1g01650	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236548,236673-236784,236865-237023,237504-237647	AT1G01650.1 CDS SIGNAL PEPTIDE PEPTIDASE-LIKE 4 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, ATSPPL4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SPPL4, T1N6.3, T1N6_3 gene SPPL4 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_function aspartic-type endopeptidase activity|GO:0004190||IEA go_process proteolysis|GO:0006508||ISS go_function peptidase activity|GO:0008233||ISS product SIGNAL PEPTIDE PEPTIDASE-LIKE 4 note SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1); Has 1466 Blast hits to 1433 proteins in 284 species: Archae - 0; Bacteria - 176; Metazoa - 611; Fungi - 153; Plants - 303; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). protein_id AT1G01650.1p transcript_id AT1G01650.1 protein_id AT1G01650.1p transcript_id AT1G01650.1
At1g01660	chr1:000240057	0.0	C/240057-240242,240352-240672,240744-240884,240960-241226,241306-241443,241539-241719,241805-241909,241983-242113,242214-242290,242449-242608	AT1G01660.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn T1N6.4, T1N6_4 go_component ubiquitin ligase complex|GO:0000151||IEA go_process protein ubiquitination|GO:0016567||IEA go_function ubiquitin-protein ligase activity|GO:0004842||IEA product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 73160 Blast hits to 42540 proteins in 2253 species: Archae - 866; Bacteria - 9091; Metazoa - 34168; Fungi - 4977; Plants - 4797; Viruses - 224; Other Eukaryotes - 19037 (source: NCBI BLink). protein_id AT1G01660.1p transcript_id AT1G01660.1 protein_id AT1G01660.1p transcript_id AT1G01660.1
AT1G01660	chr1:000240057	0.0	C/240057-240242,240352-240672,240744-240892,240965-241226,241306-241443,241539-241719,241805-241909,241983-242113,242214-242290,242449-242608	AT1G01660.2 AT1G01660.2 CDS RING/U-box superfamily protein
AT1G01670	chr1:000242943	0.0	C/242943-243128,243336-243746,244035-244182,244257-244357	AT1G01670.3 AT1G01670.3 CDS RING/U-box superfamily protein
At1g01670	chr1:000242943	0.0	C/242943-243128,243336-243746,244035-244182,244257-244361,244505-244635,244770-244873,245151-245163	AT1G01670.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn T1N6.28, T1N6_28 go_component ubiquitin ligase complex|GO:0000151||IEA go_process protein ubiquitination|GO:0016567||IEA go_function ubiquitin-protein ligase activity|GO:0004842||IEA product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2); Has 3857 Blast hits to 3144 proteins in 246 species: Archae - 4; Bacteria - 101; Metazoa - 863; Fungi - 177; Plants - 1725; Viruses - 10; Other Eukaryotes - 977 (source: NCBI BLink). protein_id AT1G01670.1p transcript_id AT1G01670.1 protein_id AT1G01670.1p transcript_id AT1G01670.1
AT1G01670	chr1:000242943	0.0	C/242943-243128,243336-243746,244035-244182,244257-244361,244505-244635,244770-244873,245151-245163	AT1G01670.2 AT1G01670.2 CDS RING/U-box superfamily protein
At1g01680	chr1:000246411	0.0	C/246411-246608,246731-246853,246949-247078,247167-247268,247362-247492,247577-247680,248191-248329	AT1G01680.1 CDS plant U-box 54 [TAIR10] CDS gene_syn ATPUB54, PLANT U-BOX 54, PUB54, T1N6.5, T1N6_5, plant U-box 54 gene PUB54 go_component ubiquitin ligase complex|GO:0000151||IEA go_process response to stress|GO:0006950||IEA go_process protein ubiquitination|GO:0016567||IEA go_function ubiquitin-protein ligase activity|GO:0004842||IEA product plant U-box 54 note plant U-box 54 (PUB54); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1); Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 25; Plants - 1809; Viruses - 3; Other Eukaryotes - 189 (source: NCBI BLink). protein_id AT1G01680.1p transcript_id AT1G01680.1 protein_id AT1G01680.1p transcript_id AT1G01680.1
At1g01690	chr1:000249242	0.0	W/249242-249306,249540-249693,249774-249930,250014-250151,250536-250588,250669-250863,251004-251066,251143-251184,251260-251316,251399-251440,251539-251594,251680-251827,251922-252006,252121-252221	AT1G01690.1 CDS putative recombination initiation defects 3 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, ATPRD3, PRD3, T1N6.6, T1N6_6, putative recombination initiation defects 3 gene PRD3 function Encodes a novel plant-specific protein that is involved in meiotic double strand break formation. go_process embryo sac development|GO:0009553|19763177|IMP go_process pollen development|GO:0009555|19763177|IMP go_process meiotic DNA double-strand break formation|GO:0042138|19763177|IMP go_process chiasma assembly|GO:0051026|19763177|IMP go_function molecular_function|GO:0003674||ND product putative recombination initiation defects 3 note putative recombination initiation defects 3 (PRD3); Has 279 Blast hits to 273 proteins in 87 species: Archae - 2; Bacteria - 106; Metazoa - 105; Fungi - 5; Plants - 32; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). protein_id AT1G01690.1p transcript_id AT1G01690.1 protein_id AT1G01690.1p transcript_id AT1G01690.1
AT1G01690	chr1:000249242	0.0	W/249242-249306,249540-249693,249774-249930,250017-250151,250536-250588,250669-250863,251004-251066,251143-251184,251260-251316,251399-251440,251539-251594,251680-251827,251922-252006,252121-252221	AT1G01690.3 AT1G01690.3 CDS putative recombination initiation defects 3
AT1G01690	chr1:000249242	0.0	W/249242-249306,249543-249693,249774-249930,250014-250151,250536-250588,250669-250863,251004-251066,251143-251184,251260-251316,251399-251440,251539-251594,251680-251827,251922-252006,252121-252221	AT1G01690.2 AT1G01690.2 CDS putative recombination initiation defects 3
At1g01695	chr1:000252947	0.0	W/252947-253457,253531-253679,253775-253874,253954-254495	AT1G01695.1 CDS Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related note Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G00440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01695.1p transcript_id AT1G01695.1 protein_id AT1G01695.1p transcript_id AT1G01695.1
At1g01700	chr1:000259495	0.0	C/259495-259614,259690-260034,260118-260417,260508-260582,260670-260824,260921-261037,261129-261474	AT1G01700.1 CDS RHO guanyl-nucleotide exchange factor 2 [TAIR10] CDS gene_syn ATROPGEF2, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, RHO guanyl-nucleotide exchange factor 2, ROPGEF2, T1N6.8, T1N6_8 gene ROPGEF2 function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|IDA product RHO guanyl-nucleotide exchange factor 2 note RHO guanyl-nucleotide exchange factor 2 (ROPGEF2); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01700.1p transcript_id AT1G01700.1 protein_id AT1G01700.1p transcript_id AT1G01700.1
AT1G01700	chr1:000259495	0.0	C/259495-259614,259690-260034,260118-260582,260670-260824,260921-261037,261129-261474	AT1G01700.4 AT1G01700.4 CDS RHO guanyl-nucleotide exchange factor 2
AT1G01700	chr1:000259663	0.0	C/259663-260034,260118-260417,260508-260603,260670-260824,260921-261037,261129-261474	AT1G01700.3 AT1G01700.3 CDS RHO guanyl-nucleotide exchange factor 2
AT1G01700	chr1:000259992	0.0	C/259992-260417,260508-260582,260670-260824,260921-261037,261129-261474	AT1G01700.2 AT1G01700.2 CDS RHO guanyl-nucleotide exchange factor 2
AT1G01700	chr1:000259992	0.0	C/259992-260417,260508-260582,260670-260824,260921-261037,261129-261474	AT1G01700.5 AT1G01700.5 CDS RHO guanyl-nucleotide exchange factor 2
At1g01710	chr1:000262950	0.0	W/262950-262965,263047-263139,263232-263299,263369-263444,263526-263572,263645-263770,263857-263934,264073-264160,264280-264392,264520-264582,264657-264712,264797-264901,265021-265077,265336-265437,265578-265626,265777-265845,265952-266029	AT1G01710.1 CDS Acyl-CoA thioesterase family protein [TAIR10] CDS gene_syn T1N6.10, T1N6.9, T1N6_10, T1N6_9 go_component peroxisome|GO:0005777|17951448|IDA go_process acyl-CoA metabolic process|GO:0006637||IEA go_function acyl-CoA thioesterase activity|GO:0016291||IEA go_process acyl-CoA metabolic process|GO:0006637||ISS go_function acyl-CoA thioesterase activity|GO:0016291||ISS go_function cyclic nucleotide binding|GO:0030551||ISS product Acyl-CoA thioesterase family protein note Acyl-CoA thioesterase family protein; FUNCTIONS IN: cyclic nucleotide binding, acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT4G00520.2); Has 3628 Blast hits to 3595 proteins in 999 species: Archae - 0; Bacteria - 1940; Metazoa - 444; Fungi - 348; Plants - 71; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink). protein_id AT1G01710.1p transcript_id AT1G01710.1 protein_id AT1G01710.1p transcript_id AT1G01710.1
AT1G01710	chr1:000262950	0.0	W/262950-262965,263047-263139,263232-263299,263369-263444,263526-263572,263645-263770,263857-263934,264073-264160,264280-264392,264520-264582,264657-264712,264797-264901,265021-265077,265336-265437,265578-265626,265777-265845,265952-266029	AT1G01710.2 AT1G01710.2 CDS Acyl-CoA thioesterase family protein
AT1G01710	chr1:000262950	0.0	W/262950-262965,263047-263139,263232-263299,263369-263444,263526-263572,263645-263770,263857-263934,264073-264160,264280-264392,264520-264582,264657-264712,264797-264901,265021-265077,265336-265437,265578-265626,265777-265845,265952-266029	AT1G01710.3 AT1G01710.3 CDS Acyl-CoA thioesterase family protein
AT1G01710	chr1:000262950	0.0	W/262950-262965,263047-263139,263232-263299,263369-263444,263526-263572,263645-263770,263857-263934,264073-264160,264280-264392,264520-264582,264657-264712,264797-264901,265021-265077,265336-265437,265578-265626,265777-265845,265952-266029	AT1G01710.4 AT1G01710.4 CDS Acyl-CoA thioesterase family protein
AT1G01710	chr1:000262950	0.0	W/262950-262965,263047-263139,263232-263299,263369-263444,263526-263572,263645-263770,263857-263934,264073-264160,264280-264392,264520-264582,264657-264712,264797-264901,265021-265077,265336-265437,265578-265626,265777-265845,265952-266029	AT1G01710.5 AT1G01710.5 CDS Acyl-CoA thioesterase family protein
AT1G01710	chr1:000262950	0.0	W/262950-262965,263047-263139,263232-263299,263369-263444,263526-263572,263645-263770,263857-263934,264073-264160,264280-264392,264520-264582,264657-264712,264797-264901,265021-265077,265336-265437,265578-265626,265777-265845,265952-266029	AT1G01710.6 AT1G01710.6 CDS Acyl-CoA thioesterase family protein
At1g01720	chr1:000268471	0.0	W/268471-268630,268717-268994,269083-269514	AT1G01720.1 CDS NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [TAIR10] CDS gene_syn ANAC002, ATAF1, Arabidopsis NAC domain containing protein 2, T1N6.12, T1N6_12 gene ATAF1 function Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA. go_component cellular_component|GO:0005575||ND go_process multicellular organismal development|GO:0007275||ISS go_process response to wounding|GO:0009611|11516145|IEP go_process negative regulation of abscisic acid mediated signaling pathway|GO:0009788|18694460|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|11516145|TAS product NAC (No Apical Meristem) domain transcriptional regulator superfamily protein note ATAF1; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 32 (TAIR:AT1G77450.1); Has 3043 Blast hits to 3037 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01720.1p transcript_id AT1G01720.1 protein_id AT1G01720.1p transcript_id AT1G01720.1
At1g01725	chr1:000270016	0.0	C/270016-270090,270622-270735	AT1G01725.1 CDS adenylosuccinate synthetase, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00530.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01725.1p transcript_id AT1G01725.1 protein_id AT1G01725.1p transcript_id AT1G01725.1
At1g01730	chr1:000271002	0.0	W/271002-271289,271379-271433,271541-271872	AT1G01730.1 CDS hypothetical protein [TAIR10] CDS gene_syn T1N6.14, T1N6_14 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01730.1p transcript_id AT1G01730.1 protein_id AT1G01730.1p transcript_id AT1G01730.1
AT1G01740	chr1:000272111	0.0	C/272111-272362,272445-272531,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-274083,274167-274239	AT1G01740.5 AT1G01740.5 CDS Protein kinase protein with tetratricopeptide repeat domain
AT1G01740	chr1:000272111	0.0	C/272111-272362,272445-272555,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-273922	AT1G01740.3 AT1G01740.3 CDS Protein kinase protein with tetratricopeptide repeat domain
AT1G01740	chr1:000272111	0.0	C/272111-272362,272445-272555,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-273922	AT1G01740.4 AT1G01740.4 CDS Protein kinase protein with tetratricopeptide repeat domain
At1g01740	chr1:000272111	0.0	C/272111-272362,272445-272555,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-274083,274167-274239	AT1G01740.1 CDS Protein kinase protein with tetratricopeptide repeat domain [TAIR10] CDS gene_syn T1N6.15, T1N6_15 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function binding|GO:0005488||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase protein with tetratricopeptide repeat domain note Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BR-signaling kinase 3 (TAIR:AT4G00710.1); Has 33834 Blast hits to 33303 proteins in 1392 species: Archae - 10; Bacteria - 2383; Metazoa - 7709; Fungi - 204; Plants - 21978; Viruses - 102; Other Eukaryotes - 1448 (source: NCBI BLink). protein_id AT1G01740.1p transcript_id AT1G01740.1 protein_id AT1G01740.1p transcript_id AT1G01740.1
At1g01740	chr1:000272111	0.0	C/272111-272362,272445-272555,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-274083,274167-274239	AT1G01740.2 CDS Protein kinase protein with tetratricopeptide repeat domain [TAIR10] CDS gene_syn T1N6.15, T1N6_15 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function binding|GO:0005488||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase protein with tetratricopeptide repeat domain note Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BR-signaling kinase 3 (TAIR:AT4G00710.1). protein_id AT1G01740.2p transcript_id AT1G01740.2 protein_id AT1G01740.2p transcript_id AT1G01740.2
At1g01750	chr1:000275528	0.0	W/275528-275530,275632-275897,275973-276126	AT1G01750.1 CDS actin depolymerizing factor 11 [TAIR10] CDS gene_syn ADF11, T1N6.16, T1N6_16, actin depolymerizing factor 11 gene ADF11 go_component intracellular|GO:0005622||IEA go_function actin binding|GO:0003779||IEA go_component intracellular|GO:0005622||ISS go_process biological_process|GO:0008150||ND product actin depolymerizing factor 11 note actin depolymerizing factor 11 (ADF11); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 8 (TAIR:AT4G00680.1); Has 1654 Blast hits to 1631 proteins in 274 species: Archae - 0; Bacteria - 5; Metazoa - 781; Fungi - 163; Plants - 515; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink). protein_id AT1G01750.1p transcript_id AT1G01750.1 protein_id AT1G01750.1p transcript_id AT1G01750.1
AT1G01750	chr1:000275614	0.0	W/275614-275897,275973-276126	AT1G01750.2 AT1G01750.2 CDS actin depolymerizing factor 11
At1g01760	chr1:000276412	0.0	C/276412-276519,276706-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278448	AT1G01760.1 CDS adenosine deaminases;RNA binding;RNA binding;adenosine deaminases [TAIR10] CDS gene_syn T1N6.17, T1N6_17 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_function adenosine deaminase activity|GO:0004000||IEA go_component cellular_component|GO:0005575||ND go_process RNA processing|GO:0006396||ISS go_function RNA binding|GO:0003723||ISS go_function adenosine deaminase activity|GO:0004000||ISS product adenosine deaminases;RNA binding;RNA binding;adenosine deaminases note adenosine deaminases;RNA binding;RNA binding;adenosine deaminases; FUNCTIONS IN: RNA binding, adenosine deaminase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01760.1p transcript_id AT1G01760.1 protein_id AT1G01760.1p transcript_id AT1G01760.1
AT1G01760	chr1:000276412	0.0	C/276412-276519,276706-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278448	AT1G01760.3 AT1G01760.3 CDS adenosine deaminases;RNA binding;RNA binding;adenosine deaminases
AT1G01760	chr1:000276412	0.0	C/276412-276519,276706-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278487	AT1G01760.2 AT1G01760.2 CDS adenosine deaminases;RNA binding;RNA binding;adenosine deaminases
AT1G01760	chr1:000276412	0.0	C/276412-276519,276706-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278487	AT1G01760.4 AT1G01760.4 CDS adenosine deaminases;RNA binding;RNA binding;adenosine deaminases
AT1G01760	chr1:000276640	0.0	C/276640-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278487	AT1G01760.5 AT1G01760.5 CDS adenosine deaminases;RNA binding;RNA binding;adenosine deaminases
At1g01770	chr1:000278759	0.0	W/278759-278809,278887-279088,279166-279240,279327-279425,279536-279576,279797-279910,279974-280088,280180-280370,280449-280568,280657-280737,280889-281121,281309-281348,281438-281536,281759-282189,282484-282490	AT1G01770.1 CDS propionyl-CoA carboxylase, putative [TAIR10] CDS gene_syn T1N6.18, T1N6_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). protein_id AT1G01770.1p transcript_id AT1G01770.1 protein_id AT1G01770.1p transcript_id AT1G01770.1
At1g01780	chr1:000282919	0.0	W/282919-283053,283132-283231,283314-283336,283444-283533,283813-284082	AT1G01780.1 CDS GATA type zinc finger transcription factor family protein [TAIR10] CDS gene_syn T1N6.19, T1N6_19 go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product GATA type zinc finger transcription factor family protein note GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1); Has 4819 Blast hits to 3002 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 4032; Fungi - 22; Plants - 446; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink). protein_id AT1G01780.1p transcript_id AT1G01780.1 protein_id AT1G01780.1p transcript_id AT1G01780.1
At1g01790	chr1:000284781	0.0	W/284781-286351,286452-286623,286717-286807,286997-287133,287221-287280,287395-287514,287642-287710,287789-287854,288087-288176,288401-288505,288593-288721,288882-289091,289237-289386,289539-289592,289718-289776,290028-290094,290170-290346,290439-290495,290578-290652,290747-290869	AT1G01790.1 CDS K+ efflux antiporter 1 [TAIR10] CDS gene_syn ATKEA1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1, KEA1, T1N6.21, T1N6_21 gene KEA1 function K efflux antiporter KEA1 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process cation transport|GO:0006812||IEA go_process potassium ion transport|GO:0006813||IEA go_process metabolic process|GO:0008152||IEA go_process transmembrane transport|GO:0055085||IEA go_function potassium ion transmembrane transporter activity|GO:0015079||ISS go_function potassium:hydrogen antiporter activity|GO:0015386||ISS product K+ efflux antiporter 1 note K+ efflux antiporter 1 (KEA1); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 2 (TAIR:AT4G00630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01790.1p transcript_id AT1G01790.1 protein_id AT1G01790.1p transcript_id AT1G01790.1
AT1G01790	chr1:000284781	0.0	W/284781-286351,286452-286623,286717-286807,286997-287133,287221-287280,287395-287514,287642-287710,287789-287854,288087-288176,288401-288505,288593-288721,288882-289091,289237-289386,289539-289592,289718-289776,290028-290094,290170-290346,290439-290495,290578-290652,290747-290869	AT1G01790.2 AT1G01790.2 CDS K+ efflux antiporter 1
At1g01800	chr1:000293396	0.0	W/293396-293409,293500-293752,294055-294120,294210-294386,294511-294888	AT1G01800.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn T1N6.22, T1N6_22 go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_function oxidoreductase activity|GO:0016491||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G61220.1); Has 66869 Blast hits to 66825 proteins in 3161 species: Archae - 673; Bacteria - 45998; Metazoa - 3911; Fungi - 3425; Plants - 2362; Viruses - 0; Other Eukaryotes - 10500 (source: NCBI BLink). protein_id AT1G01800.1p transcript_id AT1G01800.1 protein_id AT1G01800.1p transcript_id AT1G01800.1
At1g01800	chr1:000293595	0.0	W/293595-293756,294055-294120,294210-294386,294511-294888	AT1G01800.2 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn T1N6.22, T1N6_22 go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_function oxidoreductase activity|GO:0016491||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G61220.1); Has 1448 Blast hits to 1439 proteins in 381 species: Archae - 10; Bacteria - 625; Metazoa - 292; Fungi - 52; Plants - 346; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G01800.2p transcript_id AT1G01800.2 protein_id AT1G01800.2p transcript_id AT1G01800.2
At1g01810	chr1:000295242	0.0	W/295242-295724	AT1G01810.1 CDS hypothetical protein [TAIR10] CDS gene_syn T1N6.23, T1N6_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01810.1p transcript_id AT1G01810.1 protein_id AT1G01810.1p transcript_id AT1G01810.1
At1g01820	chr1:000296213	0.0	C/296213-296248,296362-296535,296626-296700,296782-296862,296951-297025,297101-297175,297532-297723	AT1G01820.1 CDS peroxin 11c [TAIR10] CDS gene_syn PEX11C, T1N6.24, T1N6_24, peroxin 11c gene PEX11C function member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. go_component peroxisomal membrane|GO:0005778||ISS go_component integral to peroxisomal membrane|GO:0005779|17220199|IDA go_process peroxisome organization|GO:0007031|17478547|IMP go_process peroxisome fission|GO:0016559|17220199|IMP go_process peroxisome fission|GO:0016559|18539750|IMP go_process peroxisome fission|GO:0016559||ISS go_function molecular_function|GO:0003674||ND product peroxin 11c note peroxin 11c (PEX11C); CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11D (TAIR:AT2G45740.3); Has 289 Blast hits to 289 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 41; Plants - 179; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). protein_id AT1G01820.1p transcript_id AT1G01820.1 protein_id AT1G01820.1p transcript_id AT1G01820.1
At1g01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn T1N6.25, T1N6_25 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink). protein_id AT1G01830.1p transcript_id AT1G01830.1 protein_id AT1G01830.1p transcript_id AT1G01830.1
At1g01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.2 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn T1N6.25, T1N6_25 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink). protein_id AT1G01830.2p transcript_id AT1G01830.2 protein_id AT1G01830.2p transcript_id AT1G01830.2
At1g01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.3 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn T1N6.25, T1N6_25 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink). protein_id AT1G01830.3p transcript_id AT1G01830.3 protein_id AT1G01830.3p transcript_id AT1G01830.3
AT1G01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.4 AT1G01830.4 CDS ARM repeat superfamily protein
At1g01840	chr1:000303650	0.0	W/303650-304108	AT1G01840.1 CDS AP2-like ethylene-responsive transcription factor SNZ, putative [TAIR10] CDS gene_syn T1N6.26, T1N6_26 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01840.1p transcript_id AT1G01840.1 protein_id AT1G01840.1p transcript_id AT1G01840.1
AT1G01860	chr1:000304439	0.0	C/304439-304504,304697-304807,304880-304963,305038-305090,305174-305258,305347-305442,305547-305702,305785-305928	AT1G01860.3 AT1G01860.3 CDS Ribosomal RNA adenine dimethylase family protein
At1g01860	chr1:000304439	0.0	C/304439-304504,304697-304807,304880-304963,305038-305090,305174-305258,305347-305442,305547-305702,305785-305934,306045-306275	AT1G01860.1 CDS Ribosomal RNA adenine dimethylase family protein [TAIR10] CDS gene_syn DIMETHYLADENOSINE TRANSFERASE, PALEFACE 1, PFC1 gene PFC1 function dimethyladenosine transferase go_component chloroplast|GO:0009507||IEA go_process response to cold|GO:0009409|9596631|IMP go_function mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity|GO:0016422|9596631|ISS product Ribosomal RNA adenine dimethylase family protein note PALEFACE 1 (PFC1); FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity; INVOLVED IN: response to cold; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228; Bacteria - 6144; Metazoa - 264; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 2738 (source: NCBI BLink). protein_id AT1G01860.1p transcript_id AT1G01860.1 protein_id AT1G01860.1p transcript_id AT1G01860.1
AT1G01860	chr1:000304622	0.0	C/304622-304807,304880-304963,305038-305090,305174-305258,305347-305442,305547-305702,305785-305928	AT1G01860.4 AT1G01860.4 CDS Ribosomal RNA adenine dimethylase family protein
AT1G01860	chr1:000304622	0.0	C/304622-304807,304880-304963,305038-305090,305174-305258,305347-305442,305547-305702,305785-305934,306045-306275	AT1G01860.2 AT1G01860.2 CDS Ribosomal RNA adenine dimethylase family protein
AT1G01860	chr1:000305151	0.0	C/305151-305258,305347-305442,305547-305702,305785-305934,306045-306275	AT1G01860.5 AT1G01860.5 CDS Ribosomal RNA adenine dimethylase family protein
At1g01870	chr1:000306384	0.0	W/306384-306456	AT1G01870.1 [TAIR10] tRNA gene_syn 51779.TRNA-VAL-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Val (anticodon: TAC) transcript_id AT1G01870.1
At1g01880	chr1:000306558	0.0	C/306558-306800,306893-307359,307441-307805,307889-308070,308148-308318,308397-308573,308797-308991	AT1G01880.1 CDS 5'-3' exonuclease family protein [TAIR10] CDS gene_syn F22M8.2, F22M8_2 go_process DNA repair|GO:0006281||IEA go_function DNA binding|GO:0003677||IEA go_function catalytic activity|GO:0003824||IEA go_function nuclease activity|GO:0004518||IEA go_component cellular_component|GO:0005575||ND go_process DNA repair|GO:0006281||ISS go_function nuclease activity|GO:0004518||ISS product 5'-3' exonuclease family protein note 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2); Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274; Bacteria - 9; Metazoa - 492; Fungi - 719; Plants - 217; Viruses - 17; Other Eukaryotes - 405 (source: NCBI BLink). protein_id AT1G01880.1p transcript_id AT1G01880.1 protein_id AT1G01880.1p transcript_id AT1G01880.1
AT1G01880	chr1:000306558	0.0	C/306558-306800,306893-307359,307441-307805,307889-308070,308148-308318,308397-308573,308797-308991	AT1G01880.4 AT1G01880.4 CDS 5'-3' exonuclease family protein
AT1G01880	chr1:000306558	0.0	C/306558-306800,306893-307359,307441-307805,307889-308070,308148-308318,308397-308594	AT1G01880.3 AT1G01880.3 CDS 5'-3' exonuclease family protein
At1g01880	chr1:000306558	0.0	C/306558-306800,306893-307359,307441-307805,307889-308070,308148-308318,308400-308573,308797-308991	AT1G01880.2 CDS 5'-3' exonuclease family protein [TAIR10] CDS gene_syn F22M8.2, F22M8_2 go_process DNA repair|GO:0006281||IEA go_function DNA binding|GO:0003677||IEA go_function catalytic activity|GO:0003824||IEA go_function nuclease activity|GO:0004518||IEA go_component cellular_component|GO:0005575||ND go_process DNA repair|GO:0006281||ISS go_function nuclease activity|GO:0004518||ISS product 5'-3' exonuclease family protein note 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2). protein_id AT1G01880.2p transcript_id AT1G01880.2 protein_id AT1G01880.2p transcript_id AT1G01880.2
At1g01890	chr1:000309275	0.0	C/309275-309347	AT1G01890.1 [TAIR10] tRNA gene_syn 51779.TRNA-LYS-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Lys (anticodon: CTT) transcript_id AT1G01890.1
At1g01900	chr1:000310332	0.0	W/310332-310981,311337-313011	AT1G01900.1 CDS subtilase family protein [TAIR10] CDS gene_syn ATSBT1.1, F22M8.3, F22M8_3, SBTI1.1 gene SBTI1.1 function Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide. go_component cell wall|GO:0005618|15593128|IDA go_process proteolysis|GO:0006508||IEA go_process negative regulation of catalytic activity|GO:0043086||IEA go_component extracellular matrix|GO:0031012|18643977|IDA go_component apoplast|GO:0048046||IDA go_process proteolysis|GO:0006508||ISS go_function serine-type endopeptidase activity|GO:0004252||IDA product subtilase family protein note SBTI1.1; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: extracellular matrix, apoplast, cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 6944 Blast hits to 6289 proteins in 1039 species: Archae - 198; Bacteria - 3931; Metazoa - 46; Fungi - 433; Plants - 1873; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink). protein_id AT1G01900.1p transcript_id AT1G01900.1 protein_id AT1G01900.1p transcript_id AT1G01900.1
At1g01910	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F22M8.4, F22M8_4 go_process cellular metal ion homeostasis|GO:0006875||IEA go_function ATP binding|GO:0005524||IEA go_component membrane|GO:0016020||ISS go_process anion transport|GO:0006820||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1); Has 2854 Blast hits to 2413 proteins in 784 species: Archae - 172; Bacteria - 1905; Metazoa - 150; Fungi - 222; Plants - 105; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink). protein_id AT1G01910.1p transcript_id AT1G01910.1 protein_id AT1G01910.1p transcript_id AT1G01910.1
At1g01910	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F22M8.4, F22M8_4 go_process cellular metal ion homeostasis|GO:0006875||IEA go_function ATP binding|GO:0005524||IEA go_component membrane|GO:0016020||ISS go_process anion transport|GO:0006820||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1); Has 2854 Blast hits to 2413 proteins in 784 species: Archae - 172; Bacteria - 1905; Metazoa - 150; Fungi - 222; Plants - 105; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink). protein_id AT1G01910.2p transcript_id AT1G01910.2 protein_id AT1G01910.2p transcript_id AT1G01910.2
At1g01910	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.4 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F22M8.4, F22M8_4 go_process cellular metal ion homeostasis|GO:0006875||IEA go_function ATP binding|GO:0005524||IEA go_component membrane|GO:0016020||ISS go_process anion transport|GO:0006820||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1); Has 2854 Blast hits to 2413 proteins in 784 species: Archae - 172; Bacteria - 1905; Metazoa - 150; Fungi - 222; Plants - 105; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink). protein_id AT1G01910.4p transcript_id AT1G01910.4 protein_id AT1G01910.4p transcript_id AT1G01910.4
At1g01910	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,315577-315644	AT1G01910.5 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F22M8.4, F22M8_4 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||ISS go_process anion transport|GO:0006820||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: anion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01910.5p transcript_id AT1G01910.5 protein_id AT1G01910.5p transcript_id AT1G01910.5
At1g01910	chr1:000313746	0.0	C/313746-313752,313872-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F22M8.4, F22M8_4 go_process cellular metal ion homeostasis|GO:0006875||IEA go_function ATP binding|GO:0005524||IEA go_component membrane|GO:0016020||ISS go_process anion transport|GO:0006820||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01910.3p transcript_id AT1G01910.3 protein_id AT1G01910.3p transcript_id AT1G01910.3
At1g01920	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.2 CDS SET domain-containing protein [TAIR10] CDS gene_syn F22M8.5, F22M8_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product SET domain-containing protein note SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01920.2p transcript_id AT1G01920.2 protein_id AT1G01920.2p transcript_id AT1G01920.2
AT1G01920	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318813,318986-319101,319204-319342	AT1G01920.5 AT1G01920.5 CDS SET domain-containing protein
AT1G01920	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318819	AT1G01920.3 AT1G01920.3 CDS SET domain-containing protein
At1g01920	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317456,317561-317642,317765-317845,317979-318040,318145-318201,318296-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.1 CDS SET domain-containing protein [TAIR10] CDS gene_syn F22M8.5, F22M8_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product SET domain-containing protein note SET domain-containing protein; BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1); Has 611 Blast hits to 608 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 239; Plants - 164; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). protein_id AT1G01920.1p transcript_id AT1G01920.1 protein_id AT1G01920.1p transcript_id AT1G01920.1
AT1G01920	chr1:000316438	0.0	W/316438-316440,316523-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.4 AT1G01920.4 CDS SET domain-containing protein
At1g01930	chr1:000320041	0.0	C/320041-320145,320252-320296,320380-320457,320769-321422,321751-321865,321958-322406,322513-322809	AT1G01930.1 CDS zinc finger protein-related [TAIR10] CDS gene_syn F22M8.6, F22M8_6 go_component intracellular|GO:0005622||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND product zinc finger protein-related note zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); Has 1975 Blast hits to 1659 proteins in 367 species: Archae - 3; Bacteria - 303; Metazoa - 582; Fungi - 382; Plants - 105; Viruses - 11; Other Eukaryotes - 589 (source: NCBI BLink). protein_id AT1G01930.1p transcript_id AT1G01930.1 protein_id AT1G01930.1p transcript_id AT1G01930.1
At1g01940	chr1:000323082	0.0	W/323082-323084,323208-323282,323679-323840,324258-324416,324636-324719	AT1G01940.1 CDS Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [TAIR10] CDS gene_syn F22M8.7, F22M8_7 go_process protein folding|GO:0006457||IEA go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS product Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein note Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: plant U-box 49 (TAIR:AT5G67530.1); Has 17692 Blast hits to 17552 proteins in 2716 species: Archae - 108; Bacteria - 7521; Metazoa - 2867; Fungi - 1402; Plants - 1253; Viruses - 0; Other Eukaryotes - 4541 (source: NCBI BLink). protein_id AT1G01940.1p transcript_id AT1G01940.1 protein_id AT1G01940.1p transcript_id AT1G01940.1
At1g01950	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328504,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.2 CDS armadillo repeat kinesin 2 [TAIR10] CDS gene_syn ARK2, F22M8.8, F22M8_8, armadillo repeat kinesin 2 gene ARK2 function Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules. go_component chloroplast|GO:0009507||IEA go_function microtubule motor activity|GO:0003777||IEA go_function binding|GO:0005488||IEA go_function ATP binding|GO:0005524||IEA go_process root development|GO:0048364|17971038|IMP go_function microtubule motor activity|GO:0003777||ISS product armadillo repeat kinesin 2 note armadillo repeat kinesin 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1); Has 17581 Blast hits to 15249 proteins in 612 species: Archae - 56; Bacteria - 561; Metazoa - 7371; Fungi - 1920; Plants - 2768; Viruses - 17; Other Eukaryotes - 4888 (source: NCBI BLink). protein_id AT1G01950.2p transcript_id AT1G01950.2 protein_id AT1G01950.2p transcript_id AT1G01950.2
At1g01950	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328686-328734,328884-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.3 CDS armadillo repeat kinesin 2 [TAIR10] CDS gene_syn ARK2, F22M8.8, F22M8_8, armadillo repeat kinesin 2 gene ARK2 function Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules. go_component chloroplast|GO:0009507||IEA go_function microtubule motor activity|GO:0003777||IEA go_function binding|GO:0005488||IEA go_function ATP binding|GO:0005524||IEA go_process root development|GO:0048364|17971038|IMP go_function microtubule motor activity|GO:0003777||ISS product armadillo repeat kinesin 2 note armadillo repeat kinesin 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1); Has 18598 Blast hits to 15978 proteins in 689 species: Archae - 52; Bacteria - 737; Metazoa - 7861; Fungi - 1903; Plants - 2828; Viruses - 15; Other Eukaryotes - 5202 (source: NCBI BLink). protein_id AT1G01950.3p transcript_id AT1G01950.3 protein_id AT1G01950.3p transcript_id AT1G01950.3
At1g01950	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.1 CDS armadillo repeat kinesin 2 [TAIR10] CDS gene_syn ARK2, F22M8.8, F22M8_8, armadillo repeat kinesin 2 gene ARK2 function Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules. go_component chloroplast|GO:0009507||IEA go_function microtubule motor activity|GO:0003777||IEA go_function binding|GO:0005488||IEA go_function ATP binding|GO:0005524||IEA go_process root development|GO:0048364|17971038|IMP go_function microtubule motor activity|GO:0003777||ISS product armadillo repeat kinesin 2 note armadillo repeat kinesin 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1); Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69; Bacteria - 853; Metazoa - 8320; Fungi - 2122; Plants - 2828; Viruses - 22; Other Eukaryotes - 5390 (source: NCBI BLink). protein_id AT1G01950.1p transcript_id AT1G01950.1 protein_id AT1G01950.1p transcript_id AT1G01950.1
AT1G01950	chr1:000326362	0.0	W/326362-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.4 AT1G01950.4 CDS armadillo repeat kinesin 2
At1g01960	chr1:000330830	0.0	C/330830-331423,331534-332183,332276-332633,332724-333045,333129-333628,333905-334178,334471-334763,334899-335321,335419-335773,335916-336233,336417-337582	AT1G01960.1 CDS SEC7-like guanine nucleotide exchange family protein [TAIR10] CDS gene_syn EDA10, F22M8.9, F22M8_9, embryo sac development arrest 10 gene EDA10 go_function ARF guanyl-nucleotide exchange factor activity|GO:0005086||IEA go_function binding|GO:0005488||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_process megagametogenesis|GO:0009561|15634699|IMP go_function guanyl-nucleotide exchange factor activity|GO:0005085||ISS product SEC7-like guanine nucleotide exchange family protein note embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0; Bacteria - 34; Metazoa - 1480; Fungi - 646; Plants - 300; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink). protein_id AT1G01960.1p transcript_id AT1G01960.1 protein_id AT1G01960.1p transcript_id AT1G01960.1
At1g01970	chr1:000338538	0.0	W/338538-338987,339126-339905	AT1G01970.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F22M8.10, F22M8_10 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G19520.1); Has 15559 Blast hits to 6864 proteins in 176 species: Archae - 0; Bacteria - 16; Metazoa - 92; Fungi - 19; Plants - 15148; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink). protein_id AT1G01970.1p transcript_id AT1G01970.1 protein_id AT1G01970.1p transcript_id AT1G01970.1
At1g01980	chr1:000340374	0.0	C/340374-341999	AT1G01980.1 CDS FAD-binding Berberine family protein [TAIR10] CDS gene_syn ATSEC1A, F22M8.11, F22M8_11, SEC1A, SIMILAR TO ELECTRON CAREER 1A gene ATSEC1A function member of Reticuline oxidase-like family go_component endomembrane system|GO:0012505||IEA go_function catalytic activity|GO:0003824||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function electron carrier activity|GO:0009055||ISS product FAD-binding Berberine family protein note ATSEC1A; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G11770.1); Has 4204 Blast hits to 4007 proteins in 589 species: Archae - 34; Bacteria - 1730; Metazoa - 0; Fungi - 1606; Plants - 712; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). protein_id AT1G01980.1p transcript_id AT1G01980.1 protein_id AT1G01980.1p transcript_id AT1G01980.1
At1g01990	chr1:000343462	0.0	C/343462-344199	AT1G01990.1 CDS hypothetical protein [TAIR10] CDS gene_syn F22M8.12, F22M8_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01990.1p transcript_id AT1G01990.1 protein_id AT1G01990.1p transcript_id AT1G01990.1
At1g02000	chr1:000346052	0.0	W/346052-347356	AT1G02000.1 CDS UDP-D-glucuronate 4-epimerase 2 [TAIR10] CDS gene_syn F22M8.13, F22M8_13, GAE2, UDP-D-glucuronate 4-epimerase 2 gene GAE2 function UDP-D-glucuronate 4-epimerase go_process carbohydrate metabolic process|GO:0005975||IEA go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_component cellular_component|GO:0005575||ND go_process nucleotide-sugar metabolic process|GO:0009225||ISS go_function catalytic activity|GO:0003824||ISS go_function UDP-glucuronate 4-epimerase activity|GO:0050378|15247385|ISS product UDP-D-glucuronate 4-epimerase 2 note UDP-D-glucuronate 4-epimerase 2 (GAE2); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 3 (TAIR:AT4G00110.1); Has 43438 Blast hits to 43429 proteins in 2985 species: Archae - 785; Bacteria - 25993; Metazoa - 728; Fungi - 385; Plants - 1220; Viruses - 41; Other Eukaryotes - 14286 (source: NCBI BLink). protein_id AT1G02000.1p transcript_id AT1G02000.1 protein_id AT1G02000.1p transcript_id AT1G02000.1
At1g02010	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351601,351737-351819,351912-352001,352126-352197	AT1G02010.2 CDS secretory 1A [TAIR10] CDS gene_syn SEC1A, secretory 1A gene SEC1A function member of KEULE Gene Family go_process vesicle docking involved in exocytosis|GO:0006904||IEA go_process vesicle-mediated transport|GO:0016192||IEA go_component cellular_component|GO:0005575||ND go_process protein secretion|GO:0009306||ISS go_function protein transporter activity|GO:0008565||ISS product secretory 1A note secretory 1A (SEC1A); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1). protein_id AT1G02010.2p transcript_id AT1G02010.2 protein_id AT1G02010.2p transcript_id AT1G02010.2
At1g02010	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.1 CDS secretory 1A [TAIR10] CDS gene_syn SEC1A, secretory 1A gene SEC1A function member of KEULE Gene Family go_process vesicle docking involved in exocytosis|GO:0006904||IEA go_process vesicle-mediated transport|GO:0016192||IEA go_component cellular_component|GO:0005575||ND go_process protein secretion|GO:0009306||ISS go_function protein transporter activity|GO:0008565||ISS product secretory 1A note secretory 1A (SEC1A); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1); Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 705; Fungi - 477; Plants - 219; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G02010.1p transcript_id AT1G02010.1 protein_id AT1G02010.1p transcript_id AT1G02010.1
AT1G02010	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351699	AT1G02010.3 AT1G02010.3 CDS secretory 1A
AT1G02010	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.4 AT1G02010.4 CDS secretory 1A
AT1G02010	chr1:000348226	0.0	W/348226-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.5 AT1G02010.5 CDS secretory 1A
AT1G02010	chr1:000349067	0.0	W/349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.6 AT1G02010.6 CDS secretory 1A
At1g02020	chr1:000352842	0.0	C/352842-353162,353238-354845	AT1G02020.1 CDS nitroreductase family protein [TAIR10] CDS gene_syn T7I23.2, T7I23_2 go_component chloroplast|GO:0009507|18431481|IDA go_function oxidoreductase activity|GO:0016491||IEA go_process metabolic process|GO:0008152||ISS go_function oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor|GO:0016657||ISS product nitroreductase family protein note nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase-like (InterPro:IPR000415); Has 762 Blast hits to 681 proteins in 314 species: Archae - 126; Bacteria - 594; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G02020.1p transcript_id AT1G02020.1 protein_id AT1G02020.1p transcript_id AT1G02020.1
At1g02020	chr1:000353214	0.0	C/353214-354845	AT1G02020.2 CDS nitroreductase family protein [TAIR10] CDS gene_syn T7I23.2, T7I23_2 go_component chloroplast|GO:0009507|18431481|IDA go_function oxidoreductase activity|GO:0016491||IEA go_process metabolic process|GO:0008152||ISS go_function oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor|GO:0016657||ISS product nitroreductase family protein note nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase-like (InterPro:IPR000415); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02020.2p transcript_id AT1G02020.2 protein_id AT1G02020.2p transcript_id AT1G02020.2
AT1G02020	chr1:000353390	0.0	C/353390-353512,353622-354845	AT1G02020.3 AT1G02020.3 CDS nitroreductase family protein
At1g02030	chr1:000355385	0.0	C/355385-356188	AT1G02030.1 CDS C2H2-like zinc finger protein [TAIR10] CDS gene_syn T7I23.3, T7I23_3 go_component intracellular|GO:0005622||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-like zinc finger protein note C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT3G60580.1); Has 3215 Blast hits to 2725 proteins in 143 species: Archae - 0; Bacteria - 4; Metazoa - 2130; Fungi - 20; Plants - 967; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G02030.1p transcript_id AT1G02030.1 protein_id AT1G02030.1p transcript_id AT1G02030.1
At1g02040	chr1:000358104	0.0	C/358104-359078	AT1G02040.1 CDS C2H2-type zinc finger family protein [TAIR10] CDS gene_syn T7I23.24, T7I23_24 go_component intracellular|GO:0005622||IEA go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-type zinc finger family protein note C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G17180.1); Has 5502 Blast hits to 3522 proteins in 286 species: Archae - 2; Bacteria - 120; Metazoa - 2284; Fungi - 460; Plants - 1034; Viruses - 242; Other Eukaryotes - 1360 (source: NCBI BLink). protein_id AT1G02040.1p transcript_id AT1G02040.1 protein_id AT1G02040.1p transcript_id AT1G02040.1
At1g02050	chr1:000359164	0.0	C/359164-360149,360240-360441	AT1G02050.1 CDS Chalcone and stilbene synthase family protein [TAIR10] CDS gene_syn LAP6, LESS ADHESIVE POLLEN 6, T7I23.4, T7I23_4 gene LAP6 go_function catalytic activity|GO:0003824||IEA go_function acyltransferase activity|GO:0008415||IEA go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_process phenylpropanoid biosynthetic process|GO:0009699||ISS go_process pollen exine formation|GO:0010584|20442277|IMP go_process pollen exine formation|GO:0010584||IMP product Chalcone and stilbene synthase family protein note LESS ADHESIVE POLLEN 6 (LAP6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, pollen exine formation; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT4G00040.1); Has 6482 Blast hits to 6477 proteins in 1606 species: Archae - 0; Bacteria - 2500; Metazoa - 0; Fungi - 67; Plants - 3666; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink). protein_id AT1G02050.1p transcript_id AT1G02050.1 protein_id AT1G02050.1p transcript_id AT1G02050.1
At1g02060	chr1:000360918	0.0	C/360918-363050	AT1G02060.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T7I23.14, T7I23_14 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G37230.1); Has 43508 Blast hits to 14040 proteins in 293 species: Archae - 4; Bacteria - 48; Metazoa - 396; Fungi - 632; Plants - 41173; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink). protein_id AT1G02060.1p transcript_id AT1G02060.1 protein_id AT1G02060.1p transcript_id AT1G02060.1
At1g02065	chr1:000365625	0.0	W/365625-366325,366723-366859,366986-367149	AT1G02065.1 CDS squamosa promoter binding protein-like 8 [TAIR10] CDS gene_syn SPL8, squamosa promoter binding protein-like 8 gene SPL8 function Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation. go_component nucleus|GO:0005634|12671094|ISS go_component nucleus|GO:0005634||ISS go_process megasporogenesis|GO:0009554|12671094|IMP go_process microsporogenesis|GO:0009556|12671094|IMP go_function DNA binding|GO:0003677|12671094|ISS go_function DNA binding|GO:0003677||ISS product squamosa promoter binding protein-like 8 note squamosa promoter binding protein-like 8 (SPL8); CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 2 (TAIR:AT5G43270.1); Has 903 Blast hits to 889 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 44; Fungi - 4; Plants - 841; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G02065.1p transcript_id AT1G02065.1 protein_id AT1G02065.1p transcript_id AT1G02065.1
At1g02065	chr1:000365625	0.0	W/365625-366365	AT1G02065.2 CDS squamosa promoter binding protein-like 8 [TAIR10] CDS gene_syn SPL8, squamosa promoter binding protein-like 8 gene SPL8 function Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation. go_component nucleus|GO:0005634|12671094|ISS go_component nucleus|GO:0005634||ISS go_process megasporogenesis|GO:0009554|12671094|IMP go_process microsporogenesis|GO:0009556|12671094|IMP go_function DNA binding|GO:0003677|12671094|ISS go_function DNA binding|GO:0003677||ISS product squamosa promoter binding protein-like 8 note squamosa promoter binding protein-like 8 (SPL8); CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 2 (TAIR:AT5G43270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02065.2p transcript_id AT1G02065.2 protein_id AT1G02065.2p transcript_id AT1G02065.2
AT1G02067	chr1:000366945	0.0	C/366945-367166	AT1G02067.1 AT1G02067.1 CDS hypothetical protein
At1g02070	chr1:000370445	0.0	C/370445-370751,370859-370947	AT1G02070.1 CDS zinc ion-binding protein, putative [TAIR10] CDS gene_syn T7I23.30, T7I23_30 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02070.1p transcript_id AT1G02070.1 protein_id AT1G02070.1p transcript_id AT1G02070.1
At1g02074	chr1:000372064	0.0	W/372064-372210	AT1G02074.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02074.1p transcript_id AT1G02074.1 protein_id AT1G02074.1p transcript_id AT1G02074.1
At1g02080	chr1:000373335	0.0	W/373335-373405,373606-373786,373892-374189,374272-374500,374583-374922,375122-375238,375325-375453,375528-375719,375808-376002,376114-376251,376352-376474,376562-376815,376925-377028,377211-377305,377391-377615,377881-378036,378119-378191,378298-378365,378504-378649,378746-378854,378943-379089,379183-379230,379305-379433,379528-379770,379866-380003,380089-380174,380270-380375,380602-380697,380846-380998,381150-381332,381405-381634,381730-381832,381912-382040,382127-382171,382373-382567,382803-382929,383030-383130,383395-383529,383608-383688,384084-384230,384318-384449,384558-384605,384694-384840,384908-384969,385171-385324,385432-385623,385713-385817,385909-386043,386133-386333,386428-386682	AT1G02080.1 CDS transcription regulators [TAIR10] CDS gene_syn T7I23.15, T7I23_15 go_component membrane|GO:0016020|17432890|IDA go_function transcription regulator activity|GO:0030528||ISS product transcription regulators note transcription regulators; FUNCTIONS IN: transcription regulator activity; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196); Has 1434 Blast hits to 680 proteins in 246 species: Archae - 0; Bacteria - 196; Metazoa - 419; Fungi - 362; Plants - 144; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink). protein_id AT1G02080.1p transcript_id AT1G02080.1 protein_id AT1G02080.1p transcript_id AT1G02080.1
AT1G02080	chr1:000373694	0.0	W/373694-373786,373892-374189,374272-374500,374583-374922,375125-375238,375325-375453,375528-375719,375808-376002,376114-376251,376352-376474,376562-376815,376925-377028,377211-377305,377391-377615,377881-378036,378119-378191,378298-378365,378504-378649,378746-378854,378943-379089,379183-379230,379305-379433,379528-379770,379866-380003,380086-380174,380270-380375,380602-380697,380846-380998,381150-381332,381405-381634,381730-381832,381912-382040,382127-382171,382373-382567,382803-382929,383030-383130,383395-383529,383608-383688,384084-384230,384318-384449,384558-384605,384694-384840,384908-384969,385171-385324,385432-385623,385713-385817,385909-386043,386133-386333,386428-386682	AT1G02080.3 AT1G02080.3 CDS transcription regulators
At1g02080	chr1:000373694	0.0	W/373694-373786,373892-374189,374272-374500,374583-374922,375125-375238,375325-375453,375528-375719,375808-376002,376114-376251,376352-376474,376562-376815,376925-377028,377211-377305,377391-377615,377881-378036,378119-378191,378298-378365,378504-378649,378746-378854,378943-379089,379183-379230,379305-379433,379528-379770,379866-380003,380089-380174,380270-380375,380602-380697,380846-380998,381150-381332,381405-381634,381730-381832,381912-382040,382127-382171,382373-382567,382803-382929,383030-383130,383395-383529,383608-383688,384084-384230,384318-384449,384558-384605,384694-384840,384908-384969,385171-385324,385432-385623,385713-385817,385909-386043,386133-386333,386428-386682	AT1G02080.2 CDS transcription regulators [TAIR10] CDS gene_syn T7I23.15, T7I23_15 go_function transcription regulator activity|GO:0030528||ISS product transcription regulators note transcription regulators; FUNCTIONS IN: transcription regulator activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196). protein_id AT1G02080.2p transcript_id AT1G02080.2 protein_id AT1G02080.2p transcript_id AT1G02080.2
At1g02090	chr1:000387479	0.0	C/387479-387503,387584-387672,388268-388406,388539-388609,388716-388760,388851-388940,389050-389138,389226-389301,389410-389568	AT1G02090.1 CDS Proteasome component (PCI) domain protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, ATCSN7, CONSTITUTIVE PHOTOMORPHOGENIC 15, COP15, COP9 SIGNALOSOME SUBUNIT 7, CSN7, FUS5, FUSCA 5, T7I23.25, T7I23_25 gene FUS5 function encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype. go_component nucleus|GO:0005634|10330469|ISS go_component signalosome|GO:0008180|11019806|TAS go_component signalosome|GO:0008180|9707402|IPI go_process photomorphogenesis|GO:0009640|11019806|TAS go_process signalosome assembly|GO:0010387|17307927|IMP go_process cullin deneddylation|GO:0010388|17307927|IMP go_function MAP kinase kinase activity|GO:0004708|10330469|ISS product Proteasome component (PCI) domain protein note FUSCA 5 (FUS5); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); Has 689 Blast hits to 689 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 405; Fungi - 166; Plants - 80; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). protein_id AT1G02090.1p transcript_id AT1G02090.1 protein_id AT1G02090.1p transcript_id AT1G02090.1
At1g02090	chr1:000387647	0.0	C/387647-387655,388268-388406,388539-388609,388716-388760,388851-388940,389050-389138,389226-389301,389410-389568	AT1G02090.2 CDS Proteasome component (PCI) domain protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, ATCSN7, CONSTITUTIVE PHOTOMORPHOGENIC 15, COP15, COP9 SIGNALOSOME SUBUNIT 7, CSN7, FUS5, FUSCA 5, T7I23.25, T7I23_25 gene FUS5 function encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype. go_component nucleus|GO:0005634|10330469|ISS go_component signalosome|GO:0008180|11019806|TAS go_component signalosome|GO:0008180|9707402|IPI go_process photomorphogenesis|GO:0009640|11019806|TAS go_process signalosome assembly|GO:0010387|17307927|IMP go_process cullin deneddylation|GO:0010388|17307927|IMP go_function MAP kinase kinase activity|GO:0004708|10330469|ISS product Proteasome component (PCI) domain protein note FUSCA 5 (FUS5); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); Has 683 Blast hits to 683 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 406; Fungi - 161; Plants - 78; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). protein_id AT1G02090.2p transcript_id AT1G02090.2 protein_id AT1G02090.2p transcript_id AT1G02090.2
At1g02090	chr1:000388223	0.0	C/388223-388406,388539-388609,388716-388760,388851-388940,389050-389138,389226-389301,389410-389568	AT1G02090.3 CDS Proteasome component (PCI) domain protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, ATCSN7, CONSTITUTIVE PHOTOMORPHOGENIC 15, COP15, COP9 SIGNALOSOME SUBUNIT 7, CSN7, FUS5, FUSCA 5, T7I23.25, T7I23_25 gene FUS5 function encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype. go_component nucleus|GO:0005634|10330469|ISS go_component signalosome|GO:0008180|11019806|TAS go_component signalosome|GO:0008180|9707402|IPI go_process photomorphogenesis|GO:0009640|11019806|TAS go_process signalosome assembly|GO:0010387|17307927|IMP go_process cullin deneddylation|GO:0010388|17307927|IMP go_function MAP kinase kinase activity|GO:0004708|10330469|ISS product Proteasome component (PCI) domain protein note FUSCA 5 (FUS5); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02090.3p transcript_id AT1G02090.3 protein_id AT1G02090.3p transcript_id AT1G02090.3
At1g02100	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392072,392262-392300,392374-392448	AT1G02100.1 CDS Leucine carboxyl methyltransferase [TAIR10] CDS gene_syn T7I23.16, T7I23_16 go_function methyltransferase activity|GO:0008168||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function methyltransferase activity|GO:0008168||ISS product Leucine carboxyl methyltransferase note Leucine carboxyl methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase, eukaryotic (InterPro:IPR021121), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 605 Blast hits to 597 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 192; Fungi - 282; Plants - 33; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). protein_id AT1G02100.1p transcript_id AT1G02100.1 protein_id AT1G02100.1p transcript_id AT1G02100.1
At1g02100	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392072,392262-392300,392374-392448	AT1G02100.3 CDS Leucine carboxyl methyltransferase [TAIR10] CDS gene_syn T7I23.16, T7I23_16 go_function methyltransferase activity|GO:0008168||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function methyltransferase activity|GO:0008168||ISS product Leucine carboxyl methyltransferase note Leucine carboxyl methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase, eukaryotic (InterPro:IPR021121), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02100.3p transcript_id AT1G02100.3 protein_id AT1G02100.3p transcript_id AT1G02100.3
At1g02100	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392076,392262-392293	AT1G02100.2 CDS Leucine carboxyl methyltransferase [TAIR10] CDS gene_syn T7I23.16, T7I23_16 go_function methyltransferase activity|GO:0008168||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function methyltransferase activity|GO:0008168||ISS product Leucine carboxyl methyltransferase note Leucine carboxyl methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase, eukaryotic (InterPro:IPR021121), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02100.2p transcript_id AT1G02100.2 protein_id AT1G02100.2p transcript_id AT1G02100.2
At1g02110	chr1:000392939	0.0	W/392939-393875,393966-394153,394228-394451,394672-395434	AT1G02110.1 CDS bZIP domain class transcription factor (DUF630 and DUF632) [TAIR10] CDS gene_syn T7I23.5, T7I23_5 go_component plasma membrane|GO:0005886|17317660|IDA go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF630 and DUF632) note Protein of unknown function (DUF630 and DUF632); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT3G60320.1); Has 861 Blast hits to 735 proteins in 117 species: Archae - 0; Bacteria - 21; Metazoa - 78; Fungi - 83; Plants - 611; Viruses - 12; Other Eukaryotes - 56 (source: NCBI BLink). protein_id AT1G02110.1p transcript_id AT1G02110.1 protein_id AT1G02110.1p transcript_id AT1G02110.1
At1g02120	chr1:000395761	0.0	W/395761-395946,396029-396088,396167-396217,396291-396356,396439-396534,396609-396725,396793-396863,396941-397098,397703-397743,397877-397964,398065-398151,398292-398346,398460-398526,398614-398713,398905-398966,399068-399110,399182-399393,399484-399720	AT1G02120.1 CDS GRAM domain family protein [TAIR10] CDS gene_syn T7I23.28, T7I23_28, VAD1, VASCULAR ASSOCIATED DEATH1 gene VAD1 function Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system. go_component chloroplast|GO:0009507||IEA go_process defense response to bacterium|GO:0042742|15269331|IMP go_process negative regulation of programmed cell death|GO:0043069|15269331|IMP product GRAM domain family protein note VASCULAR ASSOCIATED DEATH1 (VAD1); INVOLVED IN: defense response to bacterium, negative regulation of programmed cell death; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein / GRAM domain-containing protein (TAIR:AT3G59660.1); Has 1155 Blast hits to 1034 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 619; Fungi - 222; Plants - 157; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink). protein_id AT1G02120.1p transcript_id AT1G02120.1 protein_id AT1G02120.1p transcript_id AT1G02120.1
AT1G02120	chr1:000395761	0.0	W/395761-395946,396029-396088,396167-396217,396291-396356,396439-396534,396609-396725,396793-396863,396941-397098,397703-397743,397877-397964,398065-398151,398292-398346,398460-398526,398614-398713,398905-399083	AT1G02120.2 AT1G02120.2 CDS GRAM domain family protein
AT1G02120	chr1:000395761	0.0	W/395761-395946,396029-396088,396167-396217,396291-396356,396439-396534,396609-396725,396793-396863,396941-397098,397703-397743,397877-397964,398065-398151,398292-398346,398460-398526,398614-398713,399011-399027	AT1G02120.3 AT1G02120.3 CDS GRAM domain family protein
At1g02130	chr1:000400350	0.0	C/400350-400446,400725-400828,400931-401086,401164-401235,401323-401370,401461-401508,401595-401667,401775-401788	AT1G02130.1 CDS RAS 5 [TAIR10] CDS gene_syn ARA-5, ARA5, ARABIDOPSIS RAS 5, ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ATRAB1B, ATRABD2A, RA-5, RAB D2A, RABD2A, RAS 5, T7I23.6, T7I23_6 gene RA-5 function Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|15060130|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function GTP binding|GO:0005525||IEA go_process ER to Golgi vesicle-mediated transport|GO:0006888|11090219|IDA go_process ER to Golgi vesicle-mediated transport|GO:0006888|11090219|IMP go_function GTP binding|GO:0005525||ISS product RAS 5 note RAS 5 (RA-5); FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion, ER to Golgi vesicle-mediated transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A (TAIR:AT5G47200.1); Has 30420 Blast hits to 30350 proteins in 816 species: Archae - 27; Bacteria - 199; Metazoa - 15882; Fungi - 4318; Plants - 3658; Viruses - 20; Other Eukaryotes - 6316 (source: NCBI BLink). protein_id AT1G02130.1p transcript_id AT1G02130.1 protein_id AT1G02130.1p transcript_id AT1G02130.1
At1g02136	chr1:000402693	0.0	C/402693-402808,402886-402961	AT1G02136.1 [TAIR10] pseudogene
At1g02140	chr1:000403467	0.0	C/403467-403526,403771-403947,404186-404401	AT1G02140.1 CDS mago nashi family protein [TAIR10] CDS gene_syn HAP1, HAPLESS 1, MAGO, MAGO NASHI, MATERNAL EFFECT EMBRYO ARREST 63, MEE63, T7I23.7, T7I23_7 gene MAGO go_component nucleolus|GO:0005730|15496452|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component nucleus|GO:0005634||ISS go_component nucleoplasm|GO:0005654|15496452|IDA go_component nuclear speck|GO:0016607|16953428|IDA go_component exon-exon junction complex|GO:0035145|16953428|IPI go_process sex determination|GO:0007530||ISS go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process pollen tube guidance|GO:0010183|15514068|IMP go_function protein binding|GO:0005515|16953428|IPI product mago nashi family protein note MAGO NASHI (MAGO); FUNCTIONS IN: protein binding; INVOLVED IN: pollen tube guidance, sex determination, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mago nashi protein (InterPro:IPR004023); Has 476 Blast hits to 476 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 96; Plants - 76; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). protein_id AT1G02140.1p transcript_id AT1G02140.1 protein_id AT1G02140.1p transcript_id AT1G02140.1
At1g02145	chr1:000404627	0.0	W/404627-404669,404757-404842,404912-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.3 CDS homolog of asparagine-linked glycosylation 12 [TAIR10] CDS gene_syn ALG12, EBS4, EMS-MUTAGENIZED BRI1(BRASSINOSTEROID INSENSITIVE 1) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 gene ALG12 go_component endomembrane system|GO:0012505||IEA go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA go_process protein amino acid terminal N-glycosylation|GO:0006496|20023196|IMP go_process ER-associated protein catabolic process|GO:0030433|20023196|IMP go_function alpha-1,6-mannosyltransferase activity|GO:0000009|20023196|IGI product homolog of asparagine-linked glycosylation 12 note homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); Has 793 Blast hits to 783 proteins in 185 species: Archae - 0; Bacteria - 23; Metazoa - 309; Fungi - 268; Plants - 100; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). protein_id AT1G02145.3p transcript_id AT1G02145.3 protein_id AT1G02145.3p transcript_id AT1G02145.3
At1g02145	chr1:000404627	0.0	W/404627-404669,404757-404842,404912-404953,405065-405110,405242-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.1 CDS homolog of asparagine-linked glycosylation 12 [TAIR10] CDS gene_syn ALG12, EBS4, EMS-MUTAGENIZED BRI1(BRASSINOSTEROID INSENSITIVE 1) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 gene ALG12 go_component endomembrane system|GO:0012505||IEA go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA go_process protein amino acid terminal N-glycosylation|GO:0006496|20023196|IMP go_process ER-associated protein catabolic process|GO:0030433|20023196|IMP go_function alpha-1,6-mannosyltransferase activity|GO:0000009|20023196|IGI product homolog of asparagine-linked glycosylation 12 note homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT5G14850.1); Has 794 Blast hits to 784 proteins in 185 species: Archae - 0; Bacteria - 23; Metazoa - 309; Fungi - 268; Plants - 100; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G02145.1p transcript_id AT1G02145.1 protein_id AT1G02145.1p transcript_id AT1G02145.1
At1g02145	chr1:000404915	0.0	W/404915-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.4 CDS homolog of asparagine-linked glycosylation 12 [TAIR10] CDS gene_syn ALG12, EBS4, EMS-MUTAGENIZED BRI1(BRASSINOSTEROID INSENSITIVE 1) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 gene ALG12 go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA go_process protein amino acid terminal N-glycosylation|GO:0006496|20023196|IMP go_process ER-associated protein catabolic process|GO:0030433|20023196|IMP go_function alpha-1,6-mannosyltransferase activity|GO:0000009|20023196|IGI product homolog of asparagine-linked glycosylation 12 note homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT1G16900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02145.4p transcript_id AT1G02145.4 protein_id AT1G02145.4p transcript_id AT1G02145.4
At1g02145	chr1:000404915	0.0	W/404915-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,407535-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.2 CDS homolog of asparagine-linked glycosylation 12 [TAIR10] CDS gene_syn ALG12, EBS4, EMS-MUTAGENIZED BRI1(BRASSINOSTEROID INSENSITIVE 1) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 gene ALG12 go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA go_process protein amino acid terminal N-glycosylation|GO:0006496|20023196|IMP go_process ER-associated protein catabolic process|GO:0030433|20023196|IMP go_function alpha-1,6-mannosyltransferase activity|GO:0000009|20023196|IGI product homolog of asparagine-linked glycosylation 12 note homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02145.2p transcript_id AT1G02145.2 protein_id AT1G02145.2p transcript_id AT1G02145.2
At1g02150	chr1:000408779	0.0	W/408779-409138,409219-410433	AT1G02150.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T6A9.13 go_component chloroplast|GO:0009507|18431481|IDA go_function binding|GO:0005488||IEA product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G02820.1); Has 10811 Blast hits to 5678 proteins in 200 species: Archae - 0; Bacteria - 11; Metazoa - 28; Fungi - 100; Plants - 10424; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink). protein_id AT1G02150.1p transcript_id AT1G02150.1 protein_id AT1G02150.1p transcript_id AT1G02150.1
At1g02160	chr1:000410803	0.0	W/410803-410893,411177-411253,411336-411383	AT1G02160.1 CDS Cox19 family protein (CHCH motif) [TAIR10] CDS gene_syn T6A9.18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Cox19 family protein (CHCH motif) note Cox19 family protein (CHCH motif); CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); Has 56 Blast hits to 56 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 34; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02160.1p transcript_id AT1G02160.1 protein_id AT1G02160.1p transcript_id AT1G02160.1
At1g02160	chr1:000410803	0.0	W/410803-410893,411177-411361	AT1G02160.2 CDS Cox19 family protein (CHCH motif) [TAIR10] CDS gene_syn T6A9.18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Cox19 family protein (CHCH motif) note Cox19 family protein (CHCH motif); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MTCP1 (InterPro:IPR009069), CHCH (InterPro:IPR010625); Has 36 Blast hits to 36 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 19; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02160.2p transcript_id AT1G02160.2 protein_id AT1G02160.2p transcript_id AT1G02160.2
At1g02170	chr1:000411883	0.0	W/411883-412258,412460-412790,412883-413003,413080-413295,413367-413426	AT1G02170.1 CDS metacaspase 1 [TAIR10] CDS gene_syn AMC1, ARABIDOPSIS THALIANA METACASPASE 1, ARABIDOPSIS THALIANA METACASPASE 1B, ATMC1, ATMCPB1, LOL3, LSD ONE LIKE 3, MCP1B, T6A9.24, metacaspase 1 gene AMC1 function Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain go_component chloroplast|GO:0009507||IEA go_process proteolysis|GO:0006508||ISS go_process induction of apoptosis|GO:0006917|15691845|IDA go_function cysteine-type endopeptidase activity|GO:0004197|15691845|IDA product metacaspase 1 note metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink). protein_id AT1G02170.1p transcript_id AT1G02170.1 protein_id AT1G02170.1p transcript_id AT1G02170.1
At1g02180	chr1:000413619	0.0	C/413619-414217,414424-414505	AT1G02180.1 CDS ferredoxin-related [TAIR10] CDS gene_syn T6A9.14 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product ferredoxin-related note ferredoxin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02180.1p transcript_id AT1G02180.1 protein_id AT1G02180.1p transcript_id AT1G02180.1
At1g02190	chr1:000415154	0.0	W/415154-415670,415742-415961,416045-416435,416731-416838,416962-417162,417248-417520,417623-417796	AT1G02190.1 CDS Fatty acid hydroxylase superfamily [TAIR10] CDS gene_syn T6A9.15 go_component endoplasmic reticulum|GO:0005783||IEA go_process fatty acid biosynthetic process|GO:0006633||IEA go_process oxidation reduction|GO:0055114||IEA go_function iron ion binding|GO:0005506||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function catalytic activity|GO:0003824||ISS product Fatty acid hydroxylase superfamily note Fatty acid hydroxylase superfamily; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT2G37700.1); Has 2538 Blast hits to 2531 proteins in 532 species: Archae - 0; Bacteria - 866; Metazoa - 257; Fungi - 377; Plants - 504; Viruses - 3; Other Eukaryotes - 531 (source: NCBI BLink). protein_id AT1G02190.1p transcript_id AT1G02190.1 protein_id AT1G02190.1p transcript_id AT1G02190.1
At1g02190	chr1:000415154	0.0	W/415154-415670,415742-415961,416045-416435,416743-416838,416962-417162,417248-417520,417623-417796	AT1G02190.2 CDS Fatty acid hydroxylase superfamily [TAIR10] CDS gene_syn T6A9.15 go_component endoplasmic reticulum|GO:0005783||IEA go_process fatty acid biosynthetic process|GO:0006633||IEA go_process oxidation reduction|GO:0055114||IEA go_function iron ion binding|GO:0005506||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function catalytic activity|GO:0003824||ISS product Fatty acid hydroxylase superfamily note Fatty acid hydroxylase superfamily; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT2G37700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02190.2p transcript_id AT1G02190.2 protein_id AT1G02190.2p transcript_id AT1G02190.2
At1g02205	chr1:000418818	0.0	W/418818-418877,418987-419210,419297-419529,419675-419894,420514-420889,420984-421091,421191-421391,421526-421633,421720-421908,421981-422154	AT1G02205.3 CDS Fatty acid hydroxylase superfamily [TAIR10] CDS gene_syn AT1G02200, CER1, ECERIFERUM 1, POSSIBLE ALDEHYDE DECARBONYLASE, T6A9.16 gene CER1 function Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined. go_component endoplasmic reticulum|GO:0005783||IEA go_process wax biosynthetic process|GO:0010025|1847001|IMP go_process wax biosynthetic process|GO:0010025|8718622|IMP go_process cuticle development|GO:0042335|8718622|IMP go_process aldehyde catabolic process|GO:0046185||IMP go_function aldehyde decarbonylase activity|GO:0071771||IMP product Fatty acid hydroxylase superfamily note ECERIFERUM 1 (CER1); FUNCTIONS IN: aldehyde decarbonylase activity; INVOLVED IN: aldehyde catabolic process, wax biosynthetic process, cuticle development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1). protein_id AT1G02205.3p transcript_id AT1G02205.3 protein_id AT1G02205.3p transcript_id AT1G02205.3
At1g02205	chr1:000418818	0.0	W/418818-418877,418987-419210,419297-419529,419675-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.2 CDS Fatty acid hydroxylase superfamily [TAIR10] CDS gene_syn AT1G02200, CER1, ECERIFERUM 1, POSSIBLE ALDEHYDE DECARBONYLASE, T6A9.16 gene CER1 function Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined. go_component endoplasmic reticulum|GO:0005783||IEA go_process wax biosynthetic process|GO:0010025|1847001|IMP go_process wax biosynthetic process|GO:0010025|8718622|IMP go_process cuticle development|GO:0042335|8718622|IMP go_process aldehyde catabolic process|GO:0046185||IMP go_function aldehyde decarbonylase activity|GO:0071771||IMP product Fatty acid hydroxylase superfamily note ECERIFERUM 1 (CER1); FUNCTIONS IN: aldehyde decarbonylase activity; INVOLVED IN: aldehyde catabolic process, wax biosynthetic process, cuticle development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1); Has 2658 Blast hits to 2653 proteins in 533 species: Archae - 0; Bacteria - 823; Metazoa - 248; Fungi - 388; Plants - 579; Viruses - 3; Other Eukaryotes - 617 (source: NCBI BLink). protein_id AT1G02205.2p transcript_id AT1G02205.2 protein_id AT1G02205.2p transcript_id AT1G02205.2
AT1G02205	chr1:000418924	0.0	W/418924-419210,419297-419529,419675-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.4 AT1G02205.4 CDS Fatty acid hydroxylase superfamily
At1g02205	chr1:000419650	0.0	W/419650-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.1 CDS Fatty acid hydroxylase superfamily [TAIR10] CDS gene_syn AT1G02200, CER1, ECERIFERUM 1, POSSIBLE ALDEHYDE DECARBONYLASE, T6A9.16 gene CER1 function Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined. go_component endoplasmic reticulum|GO:0005783||IEA go_component endomembrane system|GO:0012505||IEA go_process wax biosynthetic process|GO:0010025|1847001|IMP go_process wax biosynthetic process|GO:0010025|8718622|IMP go_process cuticle development|GO:0042335|8718622|IMP go_process aldehyde catabolic process|GO:0046185||IMP go_function aldehyde decarbonylase activity|GO:0071771||IMP product Fatty acid hydroxylase superfamily note ECERIFERUM 1 (CER1); FUNCTIONS IN: aldehyde decarbonylase activity; INVOLVED IN: aldehyde catabolic process, wax biosynthetic process, cuticle development; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1); Has 341 Blast hits to 339 proteins in 49 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 284; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). protein_id AT1G02205.1p transcript_id AT1G02205.1 protein_id AT1G02205.1p transcript_id AT1G02205.1
AT1G02205	chr1:000420494	0.0	W/420494-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.5 AT1G02205.5 CDS Fatty acid hydroxylase superfamily
At1g02210	chr1:000427548	0.0	C/427548-427811	AT1G02210.1 CDS NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [TAIR10] CDS gene_syn T6A9.33 go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_component cellular_component|GO:0005575||ND product NAC (No Apical Meristem) domain transcriptional regulator superfamily protein note NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 4 (TAIR:AT1G02230.1); Has 519 Blast hits to 519 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 519; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02210.1p transcript_id AT1G02210.1 protein_id AT1G02210.1p transcript_id AT1G02210.1
At1g02220	chr1:000428902	0.0	C/428902-429099,429248-429370,429462-429776,429851-429997,430069-430316,430414-430567	AT1G02220.1 CDS NAC domain containing protein 3 [TAIR10] CDS gene_syn ANAC003, NAC domain containing protein 3, NAC003, T6A9.17 gene NAC003 go_process regulation of transcription|GO:0045449||IEA go_component cellular_component|GO:0005575||ND go_process multicellular organismal development|GO:0007275||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC domain containing protein 3 note NAC domain containing protein 3 (NAC003); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 48 (TAIR:AT3G04420.1); Has 2600 Blast hits to 2593 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2598; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02220.1p transcript_id AT1G02220.1 protein_id AT1G02220.1p transcript_id AT1G02220.1
At1g02228	chr1:000433031	0.0	C/433031-433819	AT1G02228.1 [TAIR10] mRNA
At1g02228	chr1:000433031	0.0	C/433031-433819	AT1G02228 [TAIR10] TE pseudo function pseudogene of no apical meristem (NAM) family protein note Transposable element gene
At1g02230	chr1:000435174	0.0	C/435174-435323,435450-435563,435650-435916,435997-436128,436277-436539,436622-436775	AT1G02230.1 CDS NAC domain containing protein 4 [TAIR10] CDS gene_syn ANAC004, NAC domain containing protein 4, NAC004, T6A9.19 gene NAC004 go_process regulation of transcription|GO:0045449||IEA go_component cellular_component|GO:0005575||ND go_process multicellular organismal development|GO:0007275||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC domain containing protein 4 note NAC domain containing protein 4 (NAC004); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 5 (TAIR:AT1G02250.1); Has 2785 Blast hits to 2773 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 2773; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G02230.1p transcript_id AT1G02230.1 protein_id AT1G02230.1p transcript_id AT1G02230.1
At1g02250	chr1:000437951	0.0	C/437951-438106,438218-438334,438422-438679,438783-438923,439052-439314,439406-439559	AT1G02250.1 CDS NAC domain containing protein 5 [TAIR10] CDS gene_syn NAC domain containing protein 5, NAC005, T6A9.20, anac005 gene NAC005 go_process regulation of transcription|GO:0045449||IEA go_component cellular_component|GO:0005575||ND go_process multicellular organismal development|GO:0007275||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC domain containing protein 5 note NAC domain containing protein 5 (NAC005); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 4 (TAIR:AT1G02230.1); Has 2682 Blast hits to 2674 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2682; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02250.1p transcript_id AT1G02250.1 protein_id AT1G02250.1p transcript_id AT1G02250.1
At1g02260	chr1:000440757	0.0	C/440757-441013,441136-441325,441398-442459	AT1G02260.1 CDS Divalent ion symporter [TAIR10] CDS gene_syn T6A9.21 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process citrate transport|GO:0015746||IEA go_process transmembrane transport|GO:0055085||IEA go_function citrate transmembrane transporter activity|GO:0015137||IEA go_component integral to membrane|GO:0016021||ISS go_function transporter activity|GO:0005215||ISS product Divalent ion symporter note Divalent ion symporter; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302; Bacteria - 8135; Metazoa - 259; Fungi - 87; Plants - 203; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink). protein_id AT1G02260.1p transcript_id AT1G02260.1 protein_id AT1G02260.1p transcript_id AT1G02260.1
AT1G02260	chr1:000440757	0.0	C/440757-441013,441136-441325,441398-442459	AT1G02260.2 AT1G02260.2 CDS Divalent ion symporter
AT1G02270	chr1:000443301	0.0	C/443301-443525,443629-443736,443979-444089,444258-444383,444489-444597,444683-444759,444846-445066,445454-445526	AT1G02270.2 AT1G02270.2 CDS Calcium-binding endonuclease/exonuclease/phosphatase family
At1g02270	chr1:000443301	0.0	C/443301-443525,443629-443736,443979-444089,444258-444383,444489-444597,444683-444759,444846-445066,445454-445559,445648-445752,445844-445942,446030-446197	AT1G02270.1 CDS Calcium-binding endonuclease/exonuclease/phosphatase family [TAIR10] CDS gene_syn T6A9.35 go_component nucleus|GO:0005634|14617066|IDA go_function calcium ion binding|GO:0005509||IEA go_process response to cold|GO:0009409|14617066|IEP go_function catalytic activity|GO:0003824||ISS go_function calcium ion binding|GO:0005509||ISS product Calcium-binding endonuclease/exonuclease/phosphatase family note Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: catalytic activity, calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT5G54130.2); Has 514 Blast hits to 514 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 59; Plants - 214; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). protein_id AT1G02270.1p transcript_id AT1G02270.1 protein_id AT1G02270.1p transcript_id AT1G02270.1
At1g02280	chr1:000448665	0.0	C/448665-448733,448812-448973,449055-449123,449225-449489,449714-449838,449939-450046,450151-450246	AT1G02280.1 CDS translocon at the outer envelope membrane of chloroplasts 33 [TAIR10] CDS gene_syn ATTOC33, PLASTID PROTEIN IMPORT 1, PPI1, T6A9.32, TOC33, translocon at the outer envelope membrane of chloroplasts 33 gene TOC33 function Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component chloroplast outer membrane|GO:0009707|10998188|IDA go_process protein targeting to chloroplast|GO:0045036|9756470|TAS go_function GTPase activity|GO:0003924|12782294|IDA go_function protein binding|GO:0005515|15773849|IPI go_function GTP binding|GO:0005525|12782294|IDA go_function GTP binding|GO:0005525||ISS go_function protein homodimerization activity|GO:0042803|20444229|IDA product translocon at the outer envelope membrane of chloroplasts 33 note translocon at the outer envelope membrane of chloroplasts 33 (TOC33); FUNCTIONS IN: protein binding, GTP binding, GTPase activity, protein homodimerization activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 34 (TAIR:AT5G05000.1); Has 1041 Blast hits to 1035 proteins in 244 species: Archae - 0; Bacteria - 399; Metazoa - 251; Fungi - 18; Plants - 325; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G02280.1p transcript_id AT1G02280.1 protein_id AT1G02280.1p transcript_id AT1G02280.1
At1g02280	chr1:000448665	0.0	C/448665-448733,448812-448973,449055-449123,449225-449489,449714-449838,449939-450046,450151-450246	AT1G02280.2 CDS translocon at the outer envelope membrane of chloroplasts 33 [TAIR10] CDS gene_syn ATTOC33, PLASTID PROTEIN IMPORT 1, PPI1, T6A9.32, TOC33, translocon at the outer envelope membrane of chloroplasts 33 gene TOC33 function Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast outer membrane|GO:0009707|10998188|IDA go_process protein targeting to chloroplast|GO:0045036|9756470|TAS go_function GTPase activity|GO:0003924|12782294|IDA go_function protein binding|GO:0005515|15773849|IPI go_function GTP binding|GO:0005525|12782294|IDA go_function GTP binding|GO:0005525||ISS go_function protein homodimerization activity|GO:0042803|20444229|IDA product translocon at the outer envelope membrane of chloroplasts 33 note translocon at the outer envelope membrane of chloroplasts 33 (TOC33); FUNCTIONS IN: protein binding, GTP binding, GTPase activity, protein homodimerization activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 34 (TAIR:AT5G05000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02280.2p transcript_id AT1G02280.2 protein_id AT1G02280.2p transcript_id AT1G02280.2
At1g02290	chr1:000450646	0.0	C/450646-451977	AT1G02290.1 CDS hypothetical protein [TAIR10] CDS gene_syn T6A9.31 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45830.1); Has 134 Blast hits to 134 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G02290.1p transcript_id AT1G02290.1 protein_id AT1G02290.1p transcript_id AT1G02290.1
At1g02300	chr1:000453288	0.0	W/453288-453365,453594-453647,453730-453810,453907-454063,454197-454336,454415-454540,454622-454840,454927-455040,455112-455147,455242-455376	AT1G02300.1 CDS Cysteine proteinases superfamily protein [TAIR10] CDS gene_syn T6A9.28, T7I23.12, T7I23_12 go_component endomembrane system|GO:0012505||IEA go_process proteolysis|GO:0006508||IEA go_process regulation of catalytic activity|GO:0050790||IEA go_function cysteine-type endopeptidase activity|GO:0004197||IEA go_function cysteine-type peptidase activity|GO:0008234||IEA go_process proteolysis|GO:0006508||ISS go_function cysteine-type peptidase activity|GO:0008234||ISS product Cysteine proteinases superfamily protein note Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7127 Blast hits to 7085 proteins in 649 species: Archae - 51; Bacteria - 96; Metazoa - 3215; Fungi - 4; Plants - 1554; Viruses - 146; Other Eukaryotes - 2061 (source: NCBI BLink). protein_id AT1G02300.1p transcript_id AT1G02300.1 protein_id AT1G02300.1p transcript_id AT1G02300.1
At1g02305	chr1:000455816	0.0	W/455816-455902,456178-456231,456314-456394,456490-456646,456757-456761,456843-456917,457010-457135,457211-457429,457514-457627,457716-457751,457840-457974	AT1G02305.1 CDS Cysteine proteinases superfamily protein [TAIR10] CDS go_component vacuole|GO:0005773|15539469|IDA go_process proteolysis|GO:0006508||IEA go_process regulation of catalytic activity|GO:0050790||IEA go_function cysteine-type endopeptidase activity|GO:0004197||IEA go_function cysteine-type peptidase activity|GO:0008234||IEA go_process proteolysis|GO:0006508||ISS go_function cysteine-type peptidase activity|GO:0008234||ISS product Cysteine proteinases superfamily protein note Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02300.1); Has 7484 Blast hits to 7435 proteins in 695 species: Archae - 51; Bacteria - 161; Metazoa - 3268; Fungi - 4; Plants - 1732; Viruses - 146; Other Eukaryotes - 2122 (source: NCBI BLink). protein_id AT1G02305.1p transcript_id AT1G02305.1 protein_id AT1G02305.1p transcript_id AT1G02305.1
At1g02310	chr1:000458243	0.0	C/458243-458636,458732-458940,459021-459143,459503-459682,460323-460652	AT1G02310.1 CDS Glycosyl hydrolase superfamily protein [TAIR10] CDS gene_syn MAN1, T6A9.1, T6A9_1, endo-beta-mannanase 1 gene MAN1 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product Glycosyl hydrolase superfamily protein note Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 762 Blast hits to 752 proteins in 193 species: Archae - 9; Bacteria - 223; Metazoa - 4; Fungi - 190; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). protein_id AT1G02310.1p transcript_id AT1G02310.1 protein_id AT1G02310.1p transcript_id AT1G02310.1
AT1G02310	chr1:000458243	0.0	C/458243-458636,458732-458940,459021-459143,459503-459682,460323-460712	AT1G02310.2 AT1G02310.2 CDS Glycosyl hydrolase superfamily protein
At1g02320	chr1:000461828	0.0	W/461828-461974	AT1G02320.1 CDS hypothetical protein [TAIR10] CDS gene_syn T6A9.30 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G02320.1p transcript_id AT1G02320.1 protein_id AT1G02320.1p transcript_id AT1G02320.1
At1g02330	chr1:000462202	0.0	C/462202-462383,462475-462632,462727-462800,462876-462999,463123-463323,463421-463521	AT1G02330.1 CDS integrator complex subunit-like protein [TAIR10] CDS gene_syn T6A9.2, T6A9_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). protein_id AT1G02330.1p transcript_id AT1G02330.1 protein_id AT1G02330.1p transcript_id AT1G02330.1
At1g02335	chr1:000463979	0.0	C/463979-464523,464762-464876	AT1G02335.1 CDS germin-like protein subfamily 2 member 2 precursor [TAIR10] CDS gene_syn GL22, T6A9.3, germin-like protein subfamily 2 member 2 precursor gene GL22 go_component endomembrane system|GO:0012505||IEA go_component apoplast|GO:0048046||IEA go_function manganese ion binding|GO:0030145||IEA go_function nutrient reservoir activity|GO:0045735||IEA product germin-like protein subfamily 2 member 2 precursor note germin-like protein subfamily 2 member 2 precursor (GL22); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 2264 Blast hits to 2183 proteins in 312 species: Archae - 0; Bacteria - 520; Metazoa - 1; Fungi - 98; Plants - 1608; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). protein_id AT1G02335.1p transcript_id AT1G02335.1 protein_id AT1G02335.1p transcript_id AT1G02335.1
AT1G02340	chr1:000465933	0.0	C/465933-466247,466732-466797,466958-467086,467186-467533	AT1G02340.2 AT1G02340.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g02340	chr1:000465933	0.0	C/465933-466247,466732-466797,466958-467086,467186-467552,467684-467685	AT1G02340.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REDUCED PHYTOCHROME SIGNALING 1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1, REP1, RSF1, T6A9.4, T6A9_4 gene HFR1 function Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. go_component nucleus|GO:0005634|10995393|TAS go_component nucleus|GO:0005634|15705947|IDA go_process protein polyubiquitination|GO:0000209|15705947|IDA go_process signal transduction|GO:0007165|10995393|TAS go_process red, far-red light phototransduction|GO:0009585|12061902|TAS go_process response to light intensity|GO:0009642|15705947|IEP go_process blue light signaling pathway|GO:0009785|15705947|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function protein binding|GO:0005515|15705947|IPI go_function protein binding|GO:0005515|15960622|IPI product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note LONG HYPOCOTYL IN FAR-RED (HFR1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3 (TAIR:AT1G09530.2); Has 1715 Blast hits to 1709 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 1707; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02340.1p transcript_id AT1G02340.1 protein_id AT1G02340.1p transcript_id AT1G02340.1
At1g02350	chr1:000469818	0.0	W/469818-469971,470252-470288,470371-470482,470574-470693	AT1G02350.1 CDS protoporphyrinogen oxidase-related [TAIR10] CDS gene_syn T6A9.34 go_process siroheme biosynthetic process|GO:0019354||IEA go_function molecular_function|GO:0003674||ND product protoporphyrinogen oxidase-related note protoporphyrinogen oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: siroheme biosynthetic process; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G02350.1p transcript_id AT1G02350.1 protein_id AT1G02350.1p transcript_id AT1G02350.1
At1g02360	chr1:000472138	0.0	C/472138-472507,472668-473116	AT1G02360.1 CDS Chitinase family protein [TAIR10] CDS gene_syn T6A9.5, T6A9_5 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_process cell wall macromolecule catabolic process|GO:0016998||IEA go_function chitinase activity|GO:0004568||IEA go_function chitinase activity|GO:0004568||ISS product Chitinase family protein note Chitinase family protein; FUNCTIONS IN: chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, leaf whorl, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1); Has 2043 Blast hits to 2034 proteins in 421 species: Archae - 0; Bacteria - 465; Metazoa - 37; Fungi - 5; Plants - 1453; Viruses - 2; Other Eukaryotes - 81 (source: NCBI BLink). protein_id AT1G02360.1p transcript_id AT1G02360.1 protein_id AT1G02360.1p transcript_id AT1G02360.1
AT1G02360	chr1:000472138	0.0	C/472138-472507,472668-473254	AT1G02360.2 AT1G02360.2 CDS Chitinase family protein
AT1G02360	chr1:000472138	0.0	C/472138-472507,472668-473272	AT1G02360.3 AT1G02360.3 CDS Chitinase family protein
At1g02370	chr1:000474516	0.0	W/474516-474887,475142-476383	AT1G02370.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T6A9.6, T6A9_6 product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G01990.1); Has 6320 Blast hits to 3912 proteins in 155 species: Archae - 0; Bacteria - 6; Metazoa - 44; Fungi - 46; Plants - 6080; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). protein_id AT1G02370.1p transcript_id AT1G02370.1 protein_id AT1G02370.1p transcript_id AT1G02370.1
At1g02380	chr1:000477814	0.0	W/477814-478303,478525-478669,478790-478850	AT1G02380.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T6A9.7, T6A9_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02380.1p transcript_id AT1G02380.1 protein_id AT1G02380.1p transcript_id AT1G02380.1
At1g02390	chr1:000480921	0.0	W/480921-481619,482270-483163	AT1G02390.1 CDS glycerol-3-phosphate acyltransferase 2 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, ATGPAT2, GPAT2, T6A9.8, T6A9_8, glycerol-3-phosphate acyltransferase 2 gene GPAT2 function Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity. go_process metabolic process|GO:0008152||IEA go_function acyltransferase activity|GO:0008415||IEA go_process metabolic process|GO:0008152||ISS go_function acyltransferase activity|GO:0008415||ISS product glycerol-3-phosphate acyltransferase 2 note glycerol-3-phosphate acyltransferase 2 (GPAT2); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 3 (TAIR:AT4G01950.1); Has 367 Blast hits to 357 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 361; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02390.1p transcript_id AT1G02390.1 protein_id AT1G02390.1p transcript_id AT1G02390.1
At1g02391	chr1:000483764	0.0	C/483764-483919	AT1G02391.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02391.1p transcript_id AT1G02391.1 protein_id AT1G02391.1p transcript_id AT1G02391.1
At1g02400	chr1:000486964	0.0	W/486964-487364,488720-489062,489146-489391	AT1G02400.1 CDS gibberellin 2-oxidase 6 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, ATGA2OX4, ATGA2OX6, Arabidopsis thaliana gibberellin 2-oxidase 4, DOWNSTREAM TARGET OF AGL15 1, DTA1, GA2OX6, T6A9.9, T6A9_9, gibberellin 2-oxidase 6 gene GA2OX6 function Encodes a gibberellin 2-oxidase that acts on C19 gibberellins but not C20 gibberellins. go_process response to red or far red light|GO:0009639|17010113|IEP go_process gibberellin catabolic process|GO:0045487|18805991|IDA product gibberellin 2-oxidase 6 note gibberellin 2-oxidase 6 (GA2OX6); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 4 (TAIR:AT1G47990.1); Has 8143 Blast hits to 8109 proteins in 973 species: Archae - 0; Bacteria - 1087; Metazoa - 68; Fungi - 840; Plants - 4773; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). protein_id AT1G02400.1p transcript_id AT1G02400.1 protein_id AT1G02400.1p transcript_id AT1G02400.1
AT1G02400	chr1:000486964	0.0	W/486964-487364,488720-489116	AT1G02400.2 AT1G02400.2 CDS gibberellin 2-oxidase 6
At1g02405	chr1:000490093	0.0	C/490093-490497	AT1G02405.1 CDS proline-rich family protein [TAIR10] CDS go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product proline-rich family protein note proline-rich family protein; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G70990.1); Has 45319 Blast hits to 18313 proteins in 1048 species: Archae - 86; Bacteria - 6513; Metazoa - 15272; Fungi - 3775; Plants - 11142; Viruses - 2024; Other Eukaryotes - 6507 (source: NCBI BLink). protein_id AT1G02405.1p transcript_id AT1G02405.1 protein_id AT1G02405.1p transcript_id AT1G02405.1
At1g02410	chr1:000491300	0.0	W/491300-491379,491488-491803,491907-491959,492086-492158,492248-492352,492443-492523,492607-492762	AT1G02410.1 CDS cytochrome c oxidase assembly protein CtaG / Cox11 family [TAIR10] CDS gene_syn T6A9.10, T6A9_10 go_function copper ion binding|GO:0005507||IEA go_process biological_process|GO:0008150||ND product cytochrome c oxidase assembly protein CtaG / Cox11 family note cytochrome c oxidase assembly protein CtaG / Cox11 family; FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533); Has 2749 Blast hits to 2749 proteins in 659 species: Archae - 0; Bacteria - 997; Metazoa - 98; Fungi - 130; Plants - 41; Viruses - 0; Other Eukaryotes - 1483 (source: NCBI BLink). protein_id AT1G02410.1p transcript_id AT1G02410.1 protein_id AT1G02410.1p transcript_id AT1G02410.1
AT1G02410	chr1:000491300	0.0	W/491300-491379,491488-491803,491907-491959,492086-492158,492248-492352,492443-492523,492607-492762	AT1G02410.2 AT1G02410.2 CDS cytochrome c oxidase assembly protein CtaG / Cox11 family
AT1G02410	chr1:000491300	0.0	W/491300-491379,491488-491803,491907-491959,492086-492158,492248-492352,492443-492523,492607-492762	AT1G02410.3 AT1G02410.3 CDS cytochrome c oxidase assembly protein CtaG / Cox11 family
At1g02420	chr1:000493683	0.0	W/493683-495158	AT1G02420.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn T6A9.11, T6A9_11 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G61360.1); Has 33079 Blast hits to 11325 proteins in 263 species: Archae - 4; Bacteria - 36; Metazoa - 353; Fungi - 350; Plants - 31222; Viruses - 0; Other Eukaryotes - 1114 (source: NCBI BLink). protein_id AT1G02420.1p transcript_id AT1G02420.1 protein_id AT1G02420.1p transcript_id AT1G02420.1
At1g02430	chr1:000495175	0.0	C/495175-495259,495350-495489,495563-495682,495757-495833,495912-496062	AT1G02430.1 CDS ADP-ribosylation factor D1B [TAIR10] CDS gene_syn ADP-ribosylation factor D1B, ARFD1B, ATARFD1B, T6A9.12, T6A9_12 gene ARFD1B function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. go_component intracellular|GO:0005622||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_function GTP binding|GO:0005525|12644670|ISS product ADP-ribosylation factor D1B note ADP-ribosylation factor D1B (ARFD1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor D1A (TAIR:AT1G02440.1); Has 8851 Blast hits to 8846 proteins in 396 species: Archae - 6; Bacteria - 6; Metazoa - 3723; Fungi - 1395; Plants - 1867; Viruses - 3; Other Eukaryotes - 1851 (source: NCBI BLink). protein_id AT1G02430.1p transcript_id AT1G02430.1 protein_id AT1G02430.1p transcript_id AT1G02430.1
AT1G02430	chr1:000495346	0.0	C/495346-495489,495563-495682,495757-495833,495912-496062	AT1G02430.2 AT1G02430.2 CDS ADP-ribosylation factor D1B
At1g02440	chr1:000496586	0.0	C/496586-496670,496760-496899,496972-497091,497165-497241,497329-497479	AT1G02440.1 CDS ADP-ribosylation factor D1A [TAIR10] CDS gene_syn ADP-ribosylation factor D1A, ARFD1A, ATARFD1A, T6A9.25 gene ARFD1A function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. go_component intracellular|GO:0005622||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_function GTP binding|GO:0005525|12644670|ISS product ADP-ribosylation factor D1A note ADP-ribosylation factor D1A (ARFD1A); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Ras GTPase (InterPro:IPR001806), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor D1B (TAIR:AT1G02430.1); Has 8047 Blast hits to 8044 proteins in 397 species: Archae - 6; Bacteria - 20; Metazoa - 3487; Fungi - 1271; Plants - 1683; Viruses - 3; Other Eukaryotes - 1577 (source: NCBI BLink). protein_id AT1G02440.1p transcript_id AT1G02440.1 protein_id AT1G02440.1p transcript_id AT1G02440.1
AT1G02440	chr1:000496756	0.0	C/496756-496899,497165-497241,497329-497479	AT1G02440.2 AT1G02440.2 CDS ADP-ribosylation factor D1A
At1g02450	chr1:000498052	0.0	C/498052-498480	AT1G02450.1 CDS NIM1-interacting 1 [TAIR10] CDS gene_syn NIM1-interacting 1, NIMIN-1, NIMIN1, T6A9.23 gene NIMIN1 function NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression. go_component nucleus|GO:0005634|14617066|IDA go_process regulation of systemic acquired resistance|GO:0010112|15749762|IMP go_process negative regulation of transcription|GO:0016481|15749762|IMP go_process defense response to bacterium|GO:0042742|15749762|IMP go_function protein binding|GO:0005515|15749762|IPI product NIM1-interacting 1 note NIM1-interacting 1 (NIMIN1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of systemic acquired resistance, defense response to bacterium, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: systemic acquired resistance (SAR) regulator protein NIMIN-1-related (TAIR:AT4G01895.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G02450.1p transcript_id AT1G02450.1 protein_id AT1G02450.1p transcript_id AT1G02450.1
At1g02460	chr1:000504897	0.0	C/504897-505407,505499-505583,505845-506052,506137-506184,506367-506534,506644-507099	AT1G02460.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn T6A9.22 go_process carbohydrate metabolic process|GO:0005975||IEA go_function polygalacturonase activity|GO:0004650||IEA go_process carbohydrate metabolic process|GO:0005975||ISS go_function polygalacturonase activity|GO:0004650||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, root, stamen, seed; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G01890.1); Has 5413 Blast hits to 5130 proteins in 651 species: Archae - 6; Bacteria - 1539; Metazoa - 261; Fungi - 1343; Plants - 1850; Viruses - 100; Other Eukaryotes - 314 (source: NCBI BLink). protein_id AT1G02460.1p transcript_id AT1G02460.1 protein_id AT1G02460.1p transcript_id AT1G02460.1
At1g02470	chr1:000511916	0.0	C/511916-511990,512074-512121,512214-512262,512378-512430,512525-512620,513147-513246,513332-513573	AT1G02470.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn T6A9.26 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G02475.1); Has 391 Blast hits to 391 proteins in 131 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). protein_id AT1G02470.1p transcript_id AT1G02470.1 protein_id AT1G02470.1p transcript_id AT1G02470.1
At1g02470	chr1:000512059	0.0	C/512059-512121,512214-512262,512378-512430,512525-512620,513147-513246,513332-513573	AT1G02470.2 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn T6A9.26 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G02475.1); Has 390 Blast hits to 390 proteins in 132 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). protein_id AT1G02470.2p transcript_id AT1G02470.2 protein_id AT1G02470.2p transcript_id AT1G02470.2
At1g02475	chr1:000514110	0.0	C/514110-514184,514271-514318,514422-514470,514553-514605,514705-514800,514892-514991,515093-515331	AT1G02475.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01883.1); Has 515 Blast hits to 515 proteins in 169 species: Archae - 0; Bacteria - 342; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). protein_id AT1G02475.1p transcript_id AT1G02475.1 protein_id AT1G02475.1p transcript_id AT1G02475.1
At1g02480	chr1:000515494	0.0	W/515494-515566	AT1G02480.1 [TAIR10] tRNA gene_syn 51953.TRNA-PHE-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Phe (anticodon: GAA) transcript_id AT1G02480.1
At1g02490	chr1:000516618	0.0	W/516618-516734	AT1G02490.1 CDS hypothetical protein [TAIR10] CDS gene_syn T14P4.35, T14P4_35 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G02490.1p transcript_id AT1G02490.1 protein_id AT1G02490.1p transcript_id AT1G02490.1
At1g02500	chr1:000519037	0.0	W/519037-520218	AT1G02500.1 CDS S-adenosylmethionine synthetase 1 [TAIR10] CDS gene_syn AtSAM1, MAT1, S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1, SAM-1, SAM1 gene SAM1 function encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS go_process ethylene biosynthetic process|GO:0009693|16311726|TAS go_process ethylene biosynthetic process|GO:0009693|2535470|TAS go_function methionine adenosyltransferase activity|GO:0004478|16365035|IDA go_function methionine adenosyltransferase activity|GO:0004478||ISS product S-adenosylmethionine synthetase 1 note S-adenosylmethionine synthetase 1 (SAM1); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ethylene biosynthetic process, S-adenosylmethionine biosynthetic process; LOCATED IN: cell wall, plasma membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 2 (TAIR:AT4G01850.2); Has 10905 Blast hits to 10897 proteins in 2898 species: Archae - 12; Bacteria - 5497; Metazoa - 373; Fungi - 167; Plants - 706; Viruses - 1; Other Eukaryotes - 4149 (source: NCBI BLink). protein_id AT1G02500.1p transcript_id AT1G02500.1 protein_id AT1G02500.1p transcript_id AT1G02500.1
At1g02500	chr1:000519037	0.0	W/519037-520218	AT1G02500.2 CDS S-adenosylmethionine synthetase 1 [TAIR10] CDS gene_syn AtSAM1, MAT1, S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1, SAM-1, SAM1 gene SAM1 function encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS go_process ethylene biosynthetic process|GO:0009693|16311726|TAS go_process ethylene biosynthetic process|GO:0009693|2535470|TAS go_function methionine adenosyltransferase activity|GO:0004478|16365035|IDA go_function methionine adenosyltransferase activity|GO:0004478||ISS product S-adenosylmethionine synthetase 1 note S-adenosylmethionine synthetase 1 (SAM1); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ethylene biosynthetic process, S-adenosylmethionine biosynthetic process; LOCATED IN: cell wall, plasma membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 2 (TAIR:AT4G01850.2); Has 10905 Blast hits to 10897 proteins in 2898 species: Archae - 12; Bacteria - 5497; Metazoa - 373; Fungi - 167; Plants - 706; Viruses - 1; Other Eukaryotes - 4149 (source: NCBI BLink). protein_id AT1G02500.2p transcript_id AT1G02500.2 protein_id AT1G02500.2p transcript_id AT1G02500.2
At1g02510	chr1:000520687	0.0	C/520687-520804,520890-521626	AT1G02510.1 CDS Outward rectifying potassium channel protein [TAIR10] CDS gene_syn ATKCO4, ATTPK4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, KCO4, T14P4.16, T14P4_16, TPK4 gene TPK4 function Encodes AtTPK4, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK4 is targeted to the plasma membrane. In contrast other members of the AtTPK proteins are located in tonoplast. AtTPK4 forms a voltage-independent K+ channel that is blocked by extracellular calcium ions. May form homomeric ion channels in vivo. go_component membrane|GO:0016020||IEA go_process potassium ion transport|GO:0006813||IEA go_function outward rectifier potassium channel activity|GO:0015271||ISS product Outward rectifying potassium channel protein note TPK4; FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: Ca2+ activated outward rectifying K+ channel 5 (TAIR:AT4G01840.1); Has 5041 Blast hits to 4858 proteins in 1159 species: Archae - 172; Bacteria - 2078; Metazoa - 1475; Fungi - 174; Plants - 227; Viruses - 19; Other Eukaryotes - 896 (source: NCBI BLink). protein_id AT1G02510.1p transcript_id AT1G02510.1 protein_id AT1G02510.1p transcript_id AT1G02510.1
At1g02520	chr1:000524134	0.0	W/524134-524436,524521-524575,524662-524837,524917-525138,525224-525462,525546-527202,527311-527577,527658-527921,528010-528309,528392-528745	AT1G02520.1 CDS P-glycoprotein 11 [TAIR10] CDS gene_syn P-glycoprotein 11, PGP11, T14P4.15, T14P4_15 gene PGP11 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component plasma membrane|GO:0005886|16618929|IDA go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product P-glycoprotein 11 note P-glycoprotein 11 (PGP11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1); Has 844961 Blast hits to 391444 proteins in 4162 species: Archae - 14749; Bacteria - 659839; Metazoa - 18308; Fungi - 13140; Plants - 9783; Viruses - 35; Other Eukaryotes - 129107 (source: NCBI BLink). protein_id AT1G02520.1p transcript_id AT1G02520.1 protein_id AT1G02520.1p transcript_id AT1G02520.1
AT1G02520	chr1:000524134	0.0	W/524134-524436,524521-524575,524662-524837,524917-525138,525224-525462,525546-527202,527311-527577,527658-527921,528010-528309,528392-528745	AT1G02520.2 AT1G02520.2 CDS P-glycoprotein 11
AT1G02520	chr1:000524134	0.0	W/524134-524436,524521-524575,524662-524837,524917-525138,525224-525462,525546-527202,527311-527577,527658-527921,528010-528309,528392-528745	AT1G02520.3 AT1G02520.3 CDS P-glycoprotein 11
At1g02530	chr1:000529836	0.0	W/529836-530099,530182-530236,530403-530578,530681-530902,530980-531218,531325-533005,533079-533345,533453-533716,533808-534107,534189-534542	AT1G02530.1 CDS P-glycoprotein 12 [TAIR10] CDS gene_syn P-glycoprotein 12, PGP12, T14P4.14, T14P4_14 gene PGP12 go_component integral to membrane|GO:0016021||IEA go_process response to cyclopentenone|GO:0010583|18334669|IEP go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product P-glycoprotein 12 note P-glycoprotein 12 (PGP12); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 834511 Blast hits to 387558 proteins in 4042 species: Archae - 14726; Bacteria - 649276; Metazoa - 18491; Fungi - 13092; Plants - 9791; Viruses - 35; Other Eukaryotes - 129100 (source: NCBI BLink). protein_id AT1G02530.1p transcript_id AT1G02530.1 protein_id AT1G02530.1p transcript_id AT1G02530.1
AT1G02530	chr1:000529836	0.0	W/529836-530099,530182-530236,530403-530578,530681-530902,530980-531218,531325-533005,533079-533354	AT1G02530.2 AT1G02530.2 CDS P-glycoprotein 12
At1g02540	chr1:000534827	0.0	C/534827-535699	AT1G02540.1 CDS hypothetical protein [TAIR10] CDS gene_syn T14P4.13, T14P4_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 3327 Blast hits to 2216 proteins in 265 species: Archae - 18; Bacteria - 202; Metazoa - 802; Fungi - 283; Plants - 84; Viruses - 187; Other Eukaryotes - 1751 (source: NCBI BLink). protein_id AT1G02540.1p transcript_id AT1G02540.1 protein_id AT1G02540.1p transcript_id AT1G02540.1
At1g02550	chr1:000536483	0.0	W/536483-537211	AT1G02550.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily protein [TAIR10] CDS gene_syn T14P4.25, T14P4_25 go_component endomembrane system|GO:0012505||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_process biological_process|GO:0008150||ND go_function pectinesterase inhibitor activity|GO:0046910||ISS product Plant invertase/pectin methylesterase inhibitor superfamily protein note Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT2G47340.1); Has 183 Blast hits to 176 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02550.1p transcript_id AT1G02550.1 protein_id AT1G02550.1p transcript_id AT1G02550.1
At1g02560	chr1:000538000	0.0	W/538000-538130,538209-538328,538419-538533,538627-538719,538808-538853,538936-539008,539255-539289,539391-539479,539611-539805	AT1G02560.1 CDS nuclear encoded CLP protease 5 [TAIR10] CDS gene_syn CLP PROTEASE 1 PROTEOLYTIC SUBUNIT, CLPP5, NCLPP1, NCLPP5, NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, T14P4.12, T14P4_12, nuclear encoded CLP protease 5 gene CLPP5 function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). go_component chloroplast|GO:0009507|18431481|IDA go_component plastid stroma|GO:0009532|14593120|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_function serine-type endopeptidase activity|GO:0004252||IEA go_component chloroplast thylakoid|GO:0009534|11278690|IDA go_component chloroplast stroma|GO:0009570|11278690|IDA go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA product nuclear encoded CLP protease 5 note nuclear encoded CLP protease 5 (CLPP5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 13512 Blast hits to 13510 proteins in 3028 species: Archae - 2; Bacteria - 8525; Metazoa - 147; Fungi - 82; Plants - 1082; Viruses - 85; Other Eukaryotes - 3589 (source: NCBI BLink). protein_id AT1G02560.1p transcript_id AT1G02560.1 protein_id AT1G02560.1p transcript_id AT1G02560.1
At1g02570	chr1:000541380	0.0	W/541380-542216	AT1G02570.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T14P4.23, T14P4_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02575.1); Has 108 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02570.1p transcript_id AT1G02570.1 protein_id AT1G02570.1p transcript_id AT1G02570.1
At1g02575	chr1:000543153	0.0	W/543153-543983	AT1G02575.1 CDS transmembrane protein, putative [TAIR10] CDS product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02570.1). protein_id AT1G02575.1p transcript_id AT1G02575.1 protein_id AT1G02575.1p transcript_id AT1G02575.1
At1g02580	chr1:000544796	0.0	W/544796-544804,544973-545062,545632-545963,546062-546235,546313-546400,546512-546637,546727-546774,546871-546939,547024-547172,547248-547374,547463-547671,547748-547879,547970-548051,548134-548181,548311-548439,548525-548602,548815-548994	AT1G02580.1 CDS SET domain-containing protein [TAIR10] CDS gene_syn EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5, T14P4.11, T14P4_11 gene MEA function Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization go_component nucleus|GO:0005634|10962025|IDA go_process regulation of gene expression by genetic imprinting|GO:0006349|19783734|IMP go_process response to absence of light|GO:0009646|12376626|IEP go_process negative regulation of transcription|GO:0016481|16651654|IMP go_process seed morphogenesis|GO:0048317|19783734|IGI go_process regulation of endosperm development|GO:2000014|10097185|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding|GO:0043565|16651654|IDA product SET domain-containing protein note MEDEA (MEA); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT4G02020.1); Has 4870 Blast hits to 4762 proteins in 465 species: Archae - 0; Bacteria - 401; Metazoa - 1924; Fungi - 484; Plants - 1009; Viruses - 0; Other Eukaryotes - 1052 (source: NCBI BLink). protein_id AT1G02580.1p transcript_id AT1G02580.1 protein_id AT1G02580.1p transcript_id AT1G02580.1
AT1G02580	chr1:000544796	0.0	W/544796-544804,544973-545062,545632-545963,546062-546235,546313-546400,546512-546637,546727-546774,546871-546939,547024-547172,547248-547374,547463-547671,547748-547879,547970-548051,548134-548253	AT1G02580.2 AT1G02580.2 CDS SET domain-containing protein
At1g02590	chr1:000552138	0.0	C/552138-552182,552275-552373,552456-552506,552687-552761	AT1G02590.1 CDS Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein [TAIR10] CDS gene_syn T14P4.22, T14P4_22 go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND go_function aldehyde oxidase activity|GO:0004031||ISS product Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein note Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein; FUNCTIONS IN: oxidoreductase activity, aldehyde oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: aldehyde oxidase 4 (TAIR:AT1G04580.1); Has 1946 Blast hits to 1943 proteins in 514 species: Archae - 0; Bacteria - 697; Metazoa - 537; Fungi - 88; Plants - 177; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink). protein_id AT1G02590.1p transcript_id AT1G02590.1 protein_id AT1G02590.1p transcript_id AT1G02590.1
At1g02600	chr1:000552640	0.0	W/552640-552711	AT1G02600.1 [TAIR10] tRNA gene_syn 51953.TRNA-HIS-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-His (anticodon: GTG) transcript_id AT1G02600.1
AT1G02610	chr1:000553181	0.0	C/553181-553261,553395-553490,553600-553677,554472-554613,554796-554863,555024-555026	AT1G02610.3 AT1G02610.3 CDS RING/FYVE/PHD zinc finger superfamily protein
At1g02610	chr1:000553181	0.0	C/553181-553261,553395-553490,553600-553677,554472-554613,554796-554863,555572-555643,555726-555854	AT1G02610.1 CDS RING/FYVE/PHD zinc finger superfamily protein [TAIR10] CDS gene_syn T14P4.10, T14P4_10 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/FYVE/PHD zinc finger superfamily protein note RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G02075.1); Has 1637 Blast hits to 1605 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 107; Plants - 616; Viruses - 18; Other Eukaryotes - 135 (source: NCBI BLink). protein_id AT1G02610.1p transcript_id AT1G02610.1 protein_id AT1G02610.1p transcript_id AT1G02610.1
AT1G02610	chr1:000553368	0.0	C/553368-553490,553600-553677,554472-554613,554796-554863,555572-555643,555726-555854	AT1G02610.2 AT1G02610.2 CDS RING/FYVE/PHD zinc finger superfamily protein
At1g02620	chr1:000557092	0.0	W/557092-557108,557317-557668	AT1G02620.1 CDS Ras-related small GTP-binding family protein [TAIR10] CDS gene_syn T14P4.21, T14P4_21 go_component intracellular|GO:0005622||IEA go_component endomembrane system|GO:0012505||IEA go_process intracellular protein transport|GO:0006886||IEA go_function GTP binding|GO:0005525||IEA product Ras-related small GTP-binding family protein note Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, intracellular; CONTAINS InterPro DOMAIN/s: Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: secretion-associated RAS super family 2 (TAIR:AT4G02080.1); Has 4733 Blast hits to 4733 proteins in 333 species: Archae - 0; Bacteria - 0; Metazoa - 2238; Fungi - 747; Plants - 975; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink). protein_id AT1G02620.1p transcript_id AT1G02620.1 protein_id AT1G02620.1p transcript_id AT1G02620.1
At1g02630	chr1:000561007	0.0	C/561007-561320,561453-561695,561902-562382	AT1G02630.2 CDS Nucleoside transporter family protein [TAIR10] CDS gene_syn T14P4.9, T14P4_9 go_component membrane|GO:0016020||IEA go_process transport|GO:0006810||IEA go_function nucleoside transmembrane transporter activity|GO:0005337||ISS product Nucleoside transporter family protein note Nucleoside transporter family protein; FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: equilibrative nucleotide transporter 1 (TAIR:AT1G70330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02630.2p transcript_id AT1G02630.2 protein_id AT1G02630.2p transcript_id AT1G02630.2
At1g02630	chr1:000561007	0.0	C/561007-561695,561902-562382	AT1G02630.1 CDS Nucleoside transporter family protein [TAIR10] CDS gene_syn T14P4.9, T14P4_9 go_component membrane|GO:0016020||IEA go_process transport|GO:0006810||IEA go_function nucleoside transmembrane transporter activity|GO:0005337||ISS product Nucleoside transporter family protein note Nucleoside transporter family protein; FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: equilibrative nucleotide transporter 1 (TAIR:AT1G70330.1); Has 1148 Blast hits to 1019 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 540; Fungi - 114; Plants - 205; Viruses - 3; Other Eukaryotes - 286 (source: NCBI BLink). protein_id AT1G02630.1p transcript_id AT1G02630.1 protein_id AT1G02630.1p transcript_id AT1G02630.1
At1g02640	chr1:000564293	0.0	W/564293-564697,565433-565711,565784-565953,566043-566140,566226-567580	AT1G02640.1 CDS beta-xylosidase 2 [TAIR10] CDS gene_syn ATBXL2, BETA-XYLOSIDASE 2, BXL2, T14P4.8, T14P4_8, beta-xylosidase 2 gene BXL2 function encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. go_component plant-type cell wall|GO:0009505|17526915|IDA go_process carbohydrate metabolic process|GO:0005975||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product beta-xylosidase 2 note beta-xylosidase 2 (BXL2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 1 (TAIR:AT5G49360.1); Has 9578 Blast hits to 8300 proteins in 1224 species: Archae - 65; Bacteria - 5802; Metazoa - 17; Fungi - 1614; Plants - 527; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink). protein_id AT1G02640.1p transcript_id AT1G02640.1 protein_id AT1G02640.1p transcript_id AT1G02640.1
At1g02650	chr1:000568704	0.0	W/568704-568739,568832-569223,569305-570418	AT1G02650.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T14P4.7, T14P4_7 go_function binding|GO:0005488||IEA go_function heat shock protein binding|GO:0031072||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT4G02100.1); Has 193 Blast hits to 189 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 37; Fungi - 13; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G02650.1p transcript_id AT1G02650.1 protein_id AT1G02650.1p transcript_id AT1G02650.1
AT1G02650	chr1:000568805	0.0	W/568805-569223,569305-570418	AT1G02650.2 AT1G02650.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g02660	chr1:000572187	0.0	C/572187-572759,572836-573252,573338-573397,573489-573953,574120-574746	AT1G02660.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T14P4.6, T14P4_6 go_process lipid metabolic process|GO:0006629||IEA go_function triglyceride lipase activity|GO:0004806||IEA go_component cellular_component|GO:0005575||ND go_process lipid metabolic process|GO:0006629||ISS go_function triglyceride lipase activity|GO:0004806||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G62590.1); Has 747 Blast hits to 737 proteins in 148 species: Archae - 0; Bacteria - 27; Metazoa - 209; Fungi - 146; Plants - 175; Viruses - 15; Other Eukaryotes - 175 (source: NCBI BLink). protein_id AT1G02660.1p transcript_id AT1G02660.1 protein_id AT1G02660.1p transcript_id AT1G02660.1
At1g02670	chr1:000576046	0.0	W/576046-576145,576548-576613,576850-576912,576994-577592,577784-577941,577979-578079,578181-578244,578546-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn T14P4.5, T14P4_5 go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_process DNA repair|GO:0006281||ISS go_function DNA binding|GO:0003677||ISS go_function helicase activity|GO:0004386||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1); Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141; Bacteria - 6646; Metazoa - 3824; Fungi - 4666; Plants - 1875; Viruses - 121; Other Eukaryotes - 3385 (source: NCBI BLink). protein_id AT1G02670.1p transcript_id AT1G02670.1 protein_id AT1G02670.1p transcript_id AT1G02670.1
AT1G02670	chr1:000576562	0.0	W/576562-576613,576850-576912,576994-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.6 AT1G02670.6 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G02670	chr1:000576562	0.0	W/576562-576613,576850-576912,576994-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579980	AT1G02670.5 AT1G02670.5 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G02670	chr1:000576562	0.0	W/576562-576613,576850-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.3 AT1G02670.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G02670	chr1:000576562	0.0	W/576562-576613,576850-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579980	AT1G02670.2 AT1G02670.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G02670	chr1:000576562	0.0	W/576562-576613,576850-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579327	AT1G02670.4 AT1G02670.4 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G02670	chr1:000576562	0.0	W/576562-576613,576850-577592,577784-577941,577979-578079,578181-578244,578546-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.7 AT1G02670.7 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g02680	chr1:000581084	0.0	W/581084-581186,581278-581315,581497-581556,581644-581718,581815-581919	AT1G02680.1 CDS TBP-associated factor 13 [TAIR10] CDS gene_syn T14P4.32, T14P4_32, TAF13, TBP-associated factor 13 gene TAF13 go_process transcription from RNA polymerase II promoter|GO:0006366||IEA go_function DNA binding|GO:0003677||IEA go_function RNA polymerase II transcription factor activity|GO:0003702||IEA go_component transcription factor complex|GO:0005667||ISS go_process transcription initiation|GO:0006352||ISS go_function RNA polymerase II transcription factor activity|GO:0003702||ISS product TBP-associated factor 13 note TBP-associated factor 13 (TAF13); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding; INVOLVED IN: transcription initiation, transcription from RNA polymerase II promoter; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IID, 18kDa subunit (InterPro:IPR003195), Histone-fold (InterPro:IPR009072); Has 554 Blast hits to 554 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 284; Plants - 44; Viruses - 2; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G02680.1p transcript_id AT1G02680.1 protein_id AT1G02680.1p transcript_id AT1G02680.1
At1g02681	chr1:000582413	0.0	W/582413-582922	AT1G02681.1 [TAIR10] pseudogene
At1g02690	chr1:000584397	0.0	W/584397-584618,584860-584956,585053-585144,585237-585368,585500-585685,585776-585942,586023-586101,586192-586320,586439-586566,586649-587036	AT1G02690.2 CDS importin alpha isoform 6 [TAIR10] CDS gene_syn IMPA-6, T14P4.3, T14P4_3, importin alpha isoform 6 gene IMPA-6 function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. go_component nucleus|GO:0005634||IEA go_component nuclear pore|GO:0005643||IEA go_component cytoplasm|GO:0005737||IEA go_process protein import into nucleus|GO:0006606||IEA go_process intracellular protein transport|GO:0006886||IEA go_function binding|GO:0005488||IEA go_function protein transporter activity|GO:0008565||IEA go_process intracellular protein transport|GO:0006886||ISS go_function protein transporter activity|GO:0008565||ISS product importin alpha isoform 6 note importin alpha isoform 6 (IMPA-6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G02150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02690.2p transcript_id AT1G02690.2 protein_id AT1G02690.2p transcript_id AT1G02690.2
At1g02690	chr1:000584397	0.0	W/584397-584618,584860-584956,585053-585144,585237-585368,585500-585685,585779-585942,586023-586101,586192-586320,586439-586566,586649-587036	AT1G02690.1 CDS importin alpha isoform 6 [TAIR10] CDS gene_syn IMPA-6, T14P4.3, T14P4_3, importin alpha isoform 6 gene IMPA-6 function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. go_component nucleus|GO:0005634||IEA go_component nuclear pore|GO:0005643||IEA go_component cytoplasm|GO:0005737||IEA go_process protein import into nucleus|GO:0006606||IEA go_process intracellular protein transport|GO:0006886||IEA go_function binding|GO:0005488||IEA go_function protein transporter activity|GO:0008565||IEA go_process intracellular protein transport|GO:0006886||ISS go_function protein transporter activity|GO:0008565||ISS product importin alpha isoform 6 note importin alpha isoform 6 (IMPA-6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G02150.1); Has 4537 Blast hits to 3341 proteins in 295 species: Archae - 4; Bacteria - 37; Metazoa - 1783; Fungi - 593; Plants - 1355; Viruses - 0; Other Eukaryotes - 765 (source: NCBI BLink). protein_id AT1G02690.1p transcript_id AT1G02690.1 protein_id AT1G02690.1p transcript_id AT1G02690.1
At1g02700	chr1:000588367	0.0	W/588367-588540,588663-589232	AT1G02700.1 CDS GATA transcription factor-like protein, putative [TAIR10] CDS gene_syn T14P4.2, T14P4_2 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G02700.1p transcript_id AT1G02700.1 protein_id AT1G02700.1p transcript_id AT1G02700.1
AT1G02705	chr1:000589584	0.0	W/589584-590003,590401-590406	AT1G02705.1 AT1G02705.1 CDS hypothetical protein
At1g02710	chr1:000589706	0.0	C/589706-589996	AT1G02710.1 CDS glycine-rich protein [TAIR10] CDS gene_syn T14P4.26, T14P4_26 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product glycine-rich protein note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 94175 Blast hits to 22560 proteins in 1554 species: Archae - 109; Bacteria - 35702; Metazoa - 26912; Fungi - 5192; Plants - 9321; Viruses - 1410; Other Eukaryotes - 15529 (source: NCBI BLink). protein_id AT1G02710.1p transcript_id AT1G02710.1 protein_id AT1G02710.1p transcript_id AT1G02710.1
At1g02720	chr1:000592115	0.0	W/592115-593200	AT1G02720.1 CDS galacturonosyltransferase 5 [TAIR10] CDS gene_syn GATL5, T14P4.1, T14P4_1, galacturonosyltransferase 5 gene GATL5 function Encodes a protein with putative galacturonosyltransferase activity. go_component endomembrane system|GO:0012505||IEA go_process carbohydrate biosynthetic process|GO:0016051||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS product galacturonosyltransferase 5 note galacturonosyltransferase 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 6 (TAIR:AT4G02130.3); Has 2014 Blast hits to 2000 proteins in 469 species: Archae - 0; Bacteria - 946; Metazoa - 269; Fungi - 2; Plants - 729; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT1G02720.1p transcript_id AT1G02720.1 protein_id AT1G02720.1p transcript_id AT1G02720.1
At1g02720	chr1:000592115	0.0	W/592115-593200	AT1G02720.2 CDS galacturonosyltransferase 5 [TAIR10] CDS gene_syn GATL5, T14P4.1, T14P4_1, galacturonosyltransferase 5 gene GATL5 function Encodes a protein with putative galacturonosyltransferase activity. go_component endomembrane system|GO:0012505||IEA go_process carbohydrate biosynthetic process|GO:0016051||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS product galacturonosyltransferase 5 note galacturonosyltransferase 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 6 (TAIR:AT4G02130.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02720.2p transcript_id AT1G02720.2 protein_id AT1G02720.2p transcript_id AT1G02720.2
At1g02730	chr1:000594697	0.0	C/594697-596478,596572-597382,597521-598473	AT1G02730.1 CDS cellulose synthase-like D5 [TAIR10] CDS gene_syn ATCSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, SALT OVERLY SENSITIVE 6, SOS6, T14P4.29, cellulose synthase-like D5 gene CSLD5 function Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. go_component Golgi apparatus|GO:0005794|17892446|IDA go_process polysaccharide biosynthetic process|GO:0000271||ISS go_process response to osmotic stress|GO:0006970|20409003|IMP go_process response to water deprivation|GO:0009414|20409003|IMP go_process response to salt stress|GO:0009651|20409003|IMP go_process plant-type cell wall biogenesis|GO:0009832||ISS go_process response to cyclopentenone|GO:0010583|18334669|IEP go_process cell wall biogenesis|GO:0042546|17892446|NAS go_process shoot development|GO:0048367|17892446|IMP go_function glucosyltransferase activity|GO:0046527|17892446|NAS product cellulose synthase-like D5 note cellulose synthase-like D5 (CSLD5); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3375 Blast hits to 3003 proteins in 709 species: Archae - 13; Bacteria - 1269; Metazoa - 102; Fungi - 19; Plants - 1879; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink). protein_id AT1G02730.1p transcript_id AT1G02730.1 protein_id AT1G02730.1p transcript_id AT1G02730.1
At1g02740	chr1:000599734	0.0	C/599734-599812,599892-599976,600065-600234,600434-600513,600721-600825,600936-600976,601227-601372,601547-601560,601653-601706,601812-602021	AT1G02740.1 CDS MRG family protein [TAIR10] CDS gene_syn T14P4.28 go_component chromatin|GO:0000785||IEA go_component nucleus|GO:0005634||IEA go_process chromatin assembly or disassembly|GO:0006333||IEA go_function chromatin binding|GO:0003682||IEA product MRG family protein note MRG family protein; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), Tudor-like, plant (InterPro:IPR014002), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT4G37280.1); Has 1083 Blast hits to 947 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 790; Fungi - 163; Plants - 70; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). protein_id AT1G02740.1p transcript_id AT1G02740.1 protein_id AT1G02740.1p transcript_id AT1G02740.1
At1g02750	chr1:000602673	0.0	W/602673-602754,602980-603125,603601-603639,603784-604134	AT1G02750.2 CDS Drought-responsive family protein [TAIR10] CDS gene_syn T14P4.27 go_process response to water deprivation|GO:0009414||ISS product Drought-responsive family protein note Drought-responsive family protein; INVOLVED IN: response to water deprivation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Drought induced 19/ RING finger protein 114 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT4G02200.1). protein_id AT1G02750.2p transcript_id AT1G02750.2 protein_id AT1G02750.2p transcript_id AT1G02750.2
At1g02750	chr1:000602673	0.0	W/602673-602754,602980-603125,603601-603678,603775-604134	AT1G02750.1 CDS Drought-responsive family protein [TAIR10] CDS gene_syn T14P4.27 go_component intracellular|GO:0005622||IEA go_function zinc ion binding|GO:0008270||IEA go_process response to water deprivation|GO:0009414||ISS product Drought-responsive family protein note Drought-responsive family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to water deprivation; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Drought induced 19/ RING finger protein 114 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT4G02200.1); Has 236 Blast hits to 236 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02750.1p transcript_id AT1G02750.1 protein_id AT1G02750.1p transcript_id AT1G02750.1
At1g02760	chr1:000604402	0.0	W/604402-604474	AT1G02760.1 [TAIR10] tRNA gene_syn 51600.TRNA-LYS-1, 51953.TRNA-LYS-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Lys (anticodon: CTT) transcript_id AT1G02760.1
At1g02770	chr1:000605071	0.0	C/605071-605403,605515-605604,605705-605805,605919-606102,606176-606322,606529-606624	AT1G02770.1 CDS UPF0725 EMB2204-like protein, putative (DUF626) [TAIR10] CDS gene_syn T14P4.24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G19060.1); Has 209 Blast hits to 208 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 209; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02770.1p transcript_id AT1G02770.1 protein_id AT1G02770.1p transcript_id AT1G02770.1
At1g02780	chr1:000608120	0.0	C/608120-608147,608242-608309,608398-608711,608816-608938,609280-609391	AT1G02780.1 CDS Ribosomal protein L19e family protein [TAIR10] CDS gene_syn T14P4.34, emb2386, embryo defective 2386 gene emb2386 go_component nucleolus|GO:0005730|15496452|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_process embryo development ending in seed dormancy|GO:0009793||NAS go_process ribosome biogenesis|GO:0042254||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L19e family protein note embryo defective 2386 (emb2386); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro:IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro:IPR015972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19e family protein (TAIR:AT3G16780.1); Has 1157 Blast hits to 1157 proteins in 410 species: Archae - 291; Bacteria - 0; Metazoa - 330; Fungi - 173; Plants - 159; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). protein_id AT1G02780.1p transcript_id AT1G02780.1 protein_id AT1G02780.1p transcript_id AT1G02780.1
At1g02790	chr1:000610681	0.0	C/610681-610935,611026-611529,611618-611920,612019-612225	AT1G02790.1 CDS polygalacturonase 4 [TAIR10] CDS gene_syn PGA4, POLYGALACTURONASE, T14P4.31, polygalacturonase 4 gene PGA4 function encodes a exopolygalacturonase. go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_process carbohydrate metabolic process|GO:0005975||ISS go_function polygalacturonase activity|GO:0004650|10485285|ISS go_function polygalacturonase activity|GO:0004650||ISS product polygalacturonase 4 note polygalacturonase 4 (PGA4); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07830.1); Has 4155 Blast hits to 4140 proteins in 501 species: Archae - 6; Bacteria - 1251; Metazoa - 14; Fungi - 1275; Plants - 1482; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). protein_id AT1G02790.1p transcript_id AT1G02790.1 protein_id AT1G02790.1p transcript_id AT1G02790.1
At1g02800	chr1:000613386	0.0	C/613386-613706,613994-614157,614240-614345,614449-614610,614722-614814,614989-615189,615277-615483,615852-616103	AT1G02800.1 CDS cellulase 2 [TAIR10] CDS gene_syn ATCEL2, CEL2, ENDO-1,4-BETA GLUCANASE, F22D16.21, F22D16_21, cellulase 2 gene CEL2 function Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. go_component endomembrane system|GO:0012505||IEA go_process pattern specification process|GO:0007389|10074717|TAS go_process response to nematode|GO:0009624|18069944|IEP go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS go_function cellulase activity|GO:0008810|10074717|TAS product cellulase 2 note cellulase 2 (CEL2); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to nematode, pattern specification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1); Has 1817 Blast hits to 1800 proteins in 268 species: Archae - 2; Bacteria - 651; Metazoa - 181; Fungi - 17; Plants - 925; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). protein_id AT1G02800.1p transcript_id AT1G02800.1 protein_id AT1G02800.1p transcript_id AT1G02800.1
At1g02810	chr1:000618284	0.0	W/618284-619328,619639-620333	AT1G02810.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily [TAIR10] CDS gene_syn F22D16.20, F22D16_20 go_component cell wall|GO:0005618||IEA go_component endomembrane system|GO:0012505||IEA go_process cell wall modification|GO:0042545||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_component plant-type cell wall|GO:0009505||ISS go_function pectinesterase activity|GO:0030599||ISS product Plant invertase/pectin methylesterase inhibitor superfamily note Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02330.1); Has 2709 Blast hits to 2654 proteins in 327 species: Archae - 6; Bacteria - 603; Metazoa - 3; Fungi - 204; Plants - 1867; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). protein_id AT1G02810.1p transcript_id AT1G02810.1 protein_id AT1G02810.1p transcript_id AT1G02810.1
At1g02813	chr1:000620773	0.0	W/620773-621222	AT1G02813.1 CDS pectinesterase (Protein of unknown function, DUF538) [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND product Protein of unknown function, DUF538 note Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, cauline leaf, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02360.1); Has 501 Blast hits to 500 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 500; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G02813.1p transcript_id AT1G02813.1 protein_id AT1G02813.1p transcript_id AT1G02813.1
At1g02816	chr1:000621637	0.0	W/621637-622137	AT1G02816.1 CDS pectinesterase (Protein of unknown function, DUF538) [TAIR10] CDS go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF538 note Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02370.1); Has 559 Blast hits to 558 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G02816.1p transcript_id AT1G02816.1 protein_id AT1G02816.1p transcript_id AT1G02816.1
At1g02820	chr1:000623933	0.0	C/623933-624134,624231-624304	AT1G02820.1 CDS Late embryogenesis abundant 3 (LEA3) family protein [TAIR10] CDS gene_syn F22D16.18, F22D16_18 go_process response to stress|GO:0006950||IEA go_process embryo development|GO:0009790||ISS go_function molecular_function|GO:0003674||ND product Late embryogenesis abundant 3 (LEA3) family protein note Late embryogenesis abundant 3 (LEA3) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development, response to stress; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: senescence-associated gene 21 (TAIR:AT4G02380.1); Has 144 Blast hits to 139 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02820.1p transcript_id AT1G02820.1 protein_id AT1G02820.1p transcript_id AT1G02820.1
At1g02830	chr1:000625145	0.0	C/625145-625292,625373-625608	AT1G02830.1 CDS Ribosomal L22e protein family [TAIR10] CDS gene_syn F22D16.17, F22D16_17 go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA product Ribosomal L22e protein family note Ribosomal L22e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: shoot apex, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671); BEST Arabidopsis thaliana protein match is: Ribosomal L22e protein family (TAIR:AT3G05560.3); Has 683 Blast hits to 683 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 136; Plants - 114; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink). protein_id AT1G02830.1p transcript_id AT1G02830.1 protein_id AT1G02830.1p transcript_id AT1G02830.1
At1g02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628777-628798	AT1G02840.3 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn ATSRP34, F22D16.16, F22D16_16, SR1, SRP34 gene SR1 function SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component nucleus|GO:0005634|10215626|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_component nuclear speck|GO:0016607|15686520|IDA go_component interchromatin granule|GO:0035061|15034145|IDA go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2); Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12; Bacteria - 1352; Metazoa - 20795; Fungi - 3692; Plants - 3807; Viruses - 567; Other Eukaryotes - 4906 (source: NCBI BLink). protein_id AT1G02840.3p transcript_id AT1G02840.3 protein_id AT1G02840.3p transcript_id AT1G02840.3
AT1G02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628777-628798	AT1G02840.4 AT1G02840.4 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
AT1G02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628777-628798	AT1G02840.5 AT1G02840.5 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628935-628995	AT1G02840.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn ATSRP34, F22D16.16, F22D16_16, SR1, SRP34 gene SR1 function SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component nucleus|GO:0005634|10215626|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_component nuclear speck|GO:0016607|15686520|IDA go_component interchromatin granule|GO:0035061|15034145|IDA go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2); Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12; Bacteria - 1352; Metazoa - 20795; Fungi - 3692; Plants - 3807; Viruses - 567; Other Eukaryotes - 4906 (source: NCBI BLink). protein_id AT1G02840.2p transcript_id AT1G02840.2 protein_id AT1G02840.2p transcript_id AT1G02840.2
At1g02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,629288-629321,629418-629494,629580-629583	AT1G02840.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn ATSRP34, F22D16.16, F22D16_16, SR1, SRP34 gene SR1 function SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component nucleus|GO:0005634|10215626|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_component nuclear speck|GO:0016607|15686520|IDA go_component interchromatin granule|GO:0035061|15034145|IDA go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2); Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12; Bacteria - 1352; Metazoa - 20795; Fungi - 3692; Plants - 3807; Viruses - 567; Other Eukaryotes - 4906 (source: NCBI BLink). protein_id AT1G02840.1p transcript_id AT1G02840.1 protein_id AT1G02840.1p transcript_id AT1G02840.1
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,631928-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.2 CDS beta glucosidase 11 [TAIR10] CDS gene_syn BGLU11, F22D16.15, F22D16_15, beta glucosidase 11 gene BGLU11 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product beta glucosidase 11 note beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02850.2p transcript_id AT1G02850.2 protein_id AT1G02850.2p transcript_id AT1G02850.2
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,632009-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.1 CDS beta glucosidase 11 [TAIR10] CDS gene_syn BGLU11, F22D16.15, F22D16_15, beta glucosidase 11 gene BGLU11 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product beta glucosidase 11 note beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 2 (TAIR:AT4G22100.1); Has 11304 Blast hits to 10989 proteins in 1473 species: Archae - 140; Bacteria - 7804; Metazoa - 711; Fungi - 201; Plants - 1455; Viruses - 0; Other Eukaryotes - 993 (source: NCBI BLink). protein_id AT1G02850.1p transcript_id AT1G02850.1 protein_id AT1G02850.1p transcript_id AT1G02850.1
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632615,632716-632806,632881-633085	AT1G02850.4 CDS beta glucosidase 11 [TAIR10] CDS gene_syn BGLU11, F22D16.15, F22D16_15, beta glucosidase 11 gene BGLU11 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product beta glucosidase 11 note beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02850.4p transcript_id AT1G02850.4 protein_id AT1G02850.4p transcript_id AT1G02850.4
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.5 CDS beta glucosidase 11 [TAIR10] CDS gene_syn BGLU11, F22D16.15, F22D16_15, beta glucosidase 11 gene BGLU11 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product beta glucosidase 11 note beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02850.5p transcript_id AT1G02850.5 protein_id AT1G02850.5p transcript_id AT1G02850.5
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632653	AT1G02850.3 CDS beta glucosidase 11 [TAIR10] CDS gene_syn BGLU11, F22D16.15, F22D16_15, beta glucosidase 11 gene BGLU11 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product beta glucosidase 11 note beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 2 (TAIR:AT4G22100.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02850.3p transcript_id AT1G02850.3 protein_id AT1G02850.3p transcript_id AT1G02850.3
At1g02860	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636359,636592-636729,636828-636886,636978-637083	AT1G02860.1 CDS SPX (SYG1/Pho81/XPR1) domain-containing protein [TAIR10] CDS gene_syn BAH1, BENZOIC ACID HYPERSENSITIVE 1, F22D16.14, F22D16_14, NLA, nitrogen limitation adaptation gene NLA function Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses. Targeted by MIR827. go_component nucleus|GO:0005634|17355433|IDA go_process plant-type hypersensitive response|GO:0009626|18753285|IMP go_process systemic acquired resistance|GO:0009627|18753285|IMP go_process salicylic acid biosynthetic process|GO:0009697|18753285|IMP go_process response to salicylic acid stimulus|GO:0009751|18753285|IEP go_process response to nitrate|GO:0010167|17355433|IMP go_process regulation of salicylic acid metabolic process|GO:0010337|18753285|IMP go_process defense response to bacterium|GO:0042742|18753285|IMP go_process response to benzoic acid stimulus|GO:0080021|18753285|IEP go_process response to benzoic acid stimulus|GO:0080021|18753285|IMP go_function ubiquitin-protein ligase activity|GO:0004842|18753285|TAS product SPX (SYG1/Pho81/XPR1) domain-containing protein note nitrogen limitation adaptation (NLA); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.1); Has 2026 Blast hits to 2013 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 1472; Fungi - 138; Plants - 261; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink). protein_id AT1G02860.1p transcript_id AT1G02860.1 protein_id AT1G02860.1p transcript_id AT1G02860.1
At1g02860	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636359,636592-636729,636828-636886,636984-637083	AT1G02860.2 CDS SPX (SYG1/Pho81/XPR1) domain-containing protein [TAIR10] CDS gene_syn BAH1, BENZOIC ACID HYPERSENSITIVE 1, F22D16.14, F22D16_14, NLA, nitrogen limitation adaptation gene NLA function Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses. Targeted by MIR827. go_component nucleus|GO:0005634|17355433|IDA go_process plant-type hypersensitive response|GO:0009626|18753285|IMP go_process systemic acquired resistance|GO:0009627|18753285|IMP go_process salicylic acid biosynthetic process|GO:0009697|18753285|IMP go_process response to salicylic acid stimulus|GO:0009751|18753285|IEP go_process response to nitrate|GO:0010167|17355433|IMP go_process regulation of salicylic acid metabolic process|GO:0010337|18753285|IMP go_process defense response to bacterium|GO:0042742|18753285|IMP go_process response to benzoic acid stimulus|GO:0080021|18753285|IEP go_process response to benzoic acid stimulus|GO:0080021|18753285|IMP go_function ubiquitin-protein ligase activity|GO:0004842|18753285|TAS product SPX (SYG1/Pho81/XPR1) domain-containing protein note nitrogen limitation adaptation (NLA); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02860.2p transcript_id AT1G02860.2 protein_id AT1G02860.2p transcript_id AT1G02860.2
AT1G02860	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636389	AT1G02860.3 AT1G02860.3 CDS SPX (SYG1/Pho81/XPR1) domain-containing protein
At1g02870	chr1:000637401	0.0	C/637401-637514,637602-637723,638258-638603	AT1G02870.1 CDS nucleolar-like protein [TAIR10] CDS gene_syn F22D16.13, F22D16_13 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G02870.1p transcript_id AT1G02870.1 protein_id AT1G02870.1p transcript_id AT1G02870.1
At1g02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643921	AT1G02880.4 CDS thiamin pyrophosphokinase1 [TAIR10] CDS gene_syn F22D16.12, F22D16_12, TPK1, thiamin pyrophosphokinase1 gene TPK1 function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine. go_component cytosol|GO:0005829|17611796|IDA go_process thiamin metabolic process|GO:0006772|17611796|IGI go_process thiamin metabolic process|GO:0006772||ISS go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA go_function thiamin diphosphokinase activity|GO:0004788||ISS product thiamin pyrophosphokinase1 note thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02880.4p transcript_id AT1G02880.4 protein_id AT1G02880.4p transcript_id AT1G02880.4
AT1G02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643949,644142-644256,644350-644485	AT1G02880.6 AT1G02880.6 CDS thiamin pyrophosphokinase1
At1g02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643949,644160-644256,644350-644476	AT1G02880.2 CDS thiamin pyrophosphokinase1 [TAIR10] CDS gene_syn F22D16.12, F22D16_12, TPK1, thiamin pyrophosphokinase1 gene TPK1 function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine. go_component cytosol|GO:0005829|17611796|IDA go_process thiamin metabolic process|GO:0006772|17611796|IGI go_process thiamin metabolic process|GO:0006772||ISS go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA go_function thiamin diphosphokinase activity|GO:0004788||ISS product thiamin pyrophosphokinase1 note thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1306 Blast hits to 1304 proteins in 531 species: Archae - 0; Bacteria - 677; Metazoa - 135; Fungi - 134; Plants - 93; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink). protein_id AT1G02880.2p transcript_id AT1G02880.2 protein_id AT1G02880.2p transcript_id AT1G02880.2
At1g02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643949,644160-644256,644350-644485	AT1G02880.3 CDS thiamin pyrophosphokinase1 [TAIR10] CDS gene_syn F22D16.12, F22D16_12, TPK1, thiamin pyrophosphokinase1 gene TPK1 function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine. go_component cytosol|GO:0005829|17611796|IDA go_process thiamin metabolic process|GO:0006772|17611796|IGI go_process thiamin metabolic process|GO:0006772||ISS go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA go_function thiamin diphosphokinase activity|GO:0004788||ISS product thiamin pyrophosphokinase1 note thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1298 Blast hits to 1296 proteins in 527 species: Archae - 0; Bacteria - 670; Metazoa - 134; Fungi - 134; Plants - 93; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink). protein_id AT1G02880.3p transcript_id AT1G02880.3 protein_id AT1G02880.3p transcript_id AT1G02880.3
At1g02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643972	AT1G02880.1 CDS thiamin pyrophosphokinase1 [TAIR10] CDS gene_syn F22D16.12, F22D16_12, TPK1, thiamin pyrophosphokinase1 gene TPK1 function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine. go_component cytosol|GO:0005829|17611796|IDA go_process thiamin metabolic process|GO:0006772|17611796|IGI go_process thiamin metabolic process|GO:0006772||ISS go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA go_function thiamin diphosphokinase activity|GO:0004788||ISS product thiamin pyrophosphokinase1 note thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1216 Blast hits to 1216 proteins in 497 species: Archae - 0; Bacteria - 615; Metazoa - 133; Fungi - 131; Plants - 88; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink). protein_id AT1G02880.1p transcript_id AT1G02880.1 protein_id AT1G02880.1p transcript_id AT1G02880.1
AT1G02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643972	AT1G02880.5 AT1G02880.5 CDS thiamin pyrophosphokinase1
At1g02890	chr1:000645372	0.0	C/645372-645485,645575-645679,645755-645814,645899-646037,646126-646310,646406-646489,646567-646689,646777-646956,647038-647107,647184-647280,647367-647442,647531-647620,647703-647807,647924-647995,648102-648275,648362-648432,648508-648656,648766-648829,648911-649139,649368-649459,649551-649675,649762-650438,650563-650709,650791-650904,651128-651219,651320-651539,651711-651797	AT1G02890.1 CDS AAA-type ATPase family protein [TAIR10] CDS gene_syn F22D16.11, F22D16_11 go_component chloroplast|GO:0009507||IEA go_function nucleotide binding|GO:0000166||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_function ATPase activity|GO:0016887||ISS product AAA-type ATPase family protein note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), SMAD/FHA domain (InterPro:IPR008984); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 33727 Blast hits to 31290 proteins in 3133 species: Archae - 1605; Bacteria - 13154; Metazoa - 4868; Fungi - 3603; Plants - 2878; Viruses - 36; Other Eukaryotes - 7583 (source: NCBI BLink). protein_id AT1G02890.1p transcript_id AT1G02890.1 protein_id AT1G02890.1p transcript_id AT1G02890.1
At1g02890	chr1:000645372	0.0	C/645372-645485,645575-645679,645755-645814,645899-646037,646126-646310,646567-646689,646777-646956,647038-647107,647184-647280,647367-647442,647531-647620,647703-647807,647924-647995,648102-648275,648362-648432,648508-648656,648766-648829,648911-649139,649368-649459,649551-649675,649762-650438,650563-650709,650791-650904,651128-651219,651320-651539,651711-651797	AT1G02890.2 CDS AAA-type ATPase family protein [TAIR10] CDS gene_syn F22D16.11, F22D16_11 go_component chloroplast|GO:0009507||IEA go_function nucleotide binding|GO:0000166||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_function ATPase activity|GO:0016887||ISS product AAA-type ATPase family protein note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), SMAD/FHA domain (InterPro:IPR008984); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02890.2p transcript_id AT1G02890.2 protein_id AT1G02890.2p transcript_id AT1G02890.2
At1g02900	chr1:000653976	0.0	C/653976-654338	AT1G02900.1 CDS rapid alkalinization factor 1 [TAIR10] CDS gene_syn ATRALF1, F22D16.10, F22D16_10, RALF-LIKE 1, RALF1, RALFL1, RAPID ALKALINIZATION FACTOR 1, rapid alkalinization factor 1 gene RALF1 function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. Mediates Ca2+-dependent signaling. go_component apoplast|GO:0048046|12611624|ISS go_process cell-cell signaling|GO:0007267|12611624|ISS go_process calcium-mediated signaling|GO:0019722|18494498|IDA go_function signal transducer activity|GO:0004871|12611624|TAS product rapid alkalinization factor 1 note rapid alkalinization factor 1 (RALF1); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 267 Blast hits to 267 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 265; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02900.1p transcript_id AT1G02900.1 protein_id AT1G02900.1p transcript_id AT1G02900.1
At1g02910	chr1:000655749	0.0	C/655749-655823,655933-656029,656134-656234,656317-656505,656588-656745,656827-657058,657142-657277,657392-657495,657856-658125	AT1G02910.1 CDS tetratricopeptide repeat (TPR)-containing protein [TAIR10] CDS gene_syn F22D16.9, F22D16_9, LOW PSII ACCUMULATION1, LPA1 gene LPA1 function Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. go_component chloroplast|GO:0009507|18431481|IDA go_function binding|GO:0005488||IEA go_process photosystem II oxygen evolving complex assembly|GO:0010270|16531500|IMP product tetratricopeptide repeat (TPR)-containing protein note LOW PSII ACCUMULATION1 (LPA1); FUNCTIONS IN: binding; INVOLVED IN: photosystem II oxygen evolving complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1); Has 201 Blast hits to 200 proteins in 49 species: Archae - 3; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G02910.1p transcript_id AT1G02910.1 protein_id AT1G02910.1p transcript_id AT1G02910.1
AT1G02910	chr1:000656293	0.0	C/656293-656505,656588-656745,656827-657058,657142-657277,657392-657495,657856-658125	AT1G02910.2 AT1G02910.2 CDS tetratricopeptide repeat (TPR)-containing protein
At1g02920	chr1:000658886	0.0	C/658886-659316,659423-659471,659556-659705	AT1G02920.1 CDS glutathione S-transferase 7 [TAIR10] CDS gene_syn ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, ATGST11, ATGSTF7, ATGSTF8, F22D16.8, F22D16_8, GLUTATHIONE S-TRANSFERASE 11, GST11, GSTF7, glutathione S-transferase 7 gene GSTF7 function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). go_component vacuole|GO:0005773|15539469|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process defense response to bacterium|GO:0042742|17028151|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_process response to cadmium ion|GO:0046686|17075075|IEP go_function copper ion binding|GO:0005507|16526091|IDA go_function glutathione binding|GO:0043295|15159623|IDA go_component nucleus|GO:0005634|15610358|IDA go_component cytoplasm|GO:0005737|12090627|NAS go_component cytoplasm|GO:0005737|15610358|IDA go_process toxin catabolic process|GO:0009407|12090627|TAS go_process defense response to fungus, incompatible interaction|GO:0009817|19857612|IDA go_function glutathione transferase activity|GO:0004364||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product glutathione S-transferase 7 note glutathione S-transferase 7 (GSTF7); FUNCTIONS IN: glutathione transferase activity, copper ion binding, cobalt ion binding, glutathione binding; INVOLVED IN: defense response to fungus, incompatible interaction, response to cadmium ion, response to salt stress, defense response to bacterium, toxin catabolic process; LOCATED IN: nucleus, vacuole, cytoplasm; EXPRESSED IN: root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase 6 (TAIR:AT1G02930.2); Has 10685 Blast hits to 10678 proteins in 1256 species: Archae - 0; Bacteria - 5560; Metazoa - 1482; Fungi - 785; Plants - 1082; Viruses - 0; Other Eukaryotes - 1776 (source: NCBI BLink). protein_id AT1G02920.1p transcript_id AT1G02920.1 protein_id AT1G02920.1p transcript_id AT1G02920.1
At1g02930	chr1:000661363	0.0	C/661363-661790,661901-661949,662042-662191	AT1G02930.1 CDS glutathione S-transferase 6 [TAIR10] CDS gene_syn ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ATGST1, ATGSTF3, ATGSTF6, EARLY RESPONSIVE TO DEHYDRATION 11, ERD11, F22D16.7, F22D16_7, GLUTATHIONE S-TRANSFERASE, GLUTATHIONE S-TRANSFERASE 1, GST1, GSTF6, glutathione S-transferase 6 gene GSTF6 function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). go_component cell wall|GO:0005618|16287169|IDA go_component vacuole|GO:0005773|15539469|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process defense response to bacterium|GO:0042742|17028151|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_process response to cadmium ion|GO:0046686|17075075|IEP go_function copper ion binding|GO:0005507|16526091|IDA go_function glutathione binding|GO:0043295|15159623|IDA go_component cytoplasm|GO:0005737|12090627|NAS go_component mitochondrion|GO:0005739|12492832|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_process response to stress|GO:0006950||IEP go_process response to oxidative stress|GO:0006979|12492832|IDA go_process response to oxidative stress|GO:0006979|9501110|IEP go_process toxin catabolic process|GO:0009407|12090627|TAS go_process response to water deprivation|GO:0009414|8075396|IEP go_process response to water deprivation|GO:0009414|8253194|IEP go_function glutathione transferase activity|GO:0004364||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product glutathione S-transferase 6 note glutathione S-transferase 6 (GSTF6); FUNCTIONS IN: glutathione transferase activity, copper ion binding, cobalt ion binding, glutathione binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, cell wall, vacuole, cytoplasm; EXPRESSED IN: fruit, root, cultured cell, leaf; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase 7 (TAIR:AT1G02920.1); Has 11457 Blast hits to 11450 proteins in 1362 species: Archae - 0; Bacteria - 6026; Metazoa - 1625; Fungi - 707; Plants - 1232; Viruses - 0; Other Eukaryotes - 1867 (source: NCBI BLink). protein_id AT1G02930.1p transcript_id AT1G02930.1 protein_id AT1G02930.1p transcript_id AT1G02930.1
At1g02930	chr1:000661363	0.0	C/661363-661790,661901-661949,662042-662191	AT1G02930.2 CDS glutathione S-transferase 6 [TAIR10] CDS gene_syn ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ATGST1, ATGSTF3, ATGSTF6, EARLY RESPONSIVE TO DEHYDRATION 11, ERD11, F22D16.7, F22D16_7, GLUTATHIONE S-TRANSFERASE, GLUTATHIONE S-TRANSFERASE 1, GST1, GSTF6, glutathione S-transferase 6 gene GSTF6 function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). go_component cytoplasm|GO:0005737|12090627|NAS go_component mitochondrion|GO:0005739|12492832|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_process response to stress|GO:0006950||IEP go_process response to oxidative stress|GO:0006979|12492832|IDA go_process response to oxidative stress|GO:0006979|9501110|IEP go_process toxin catabolic process|GO:0009407|12090627|TAS go_process response to water deprivation|GO:0009414|8075396|IEP go_process response to water deprivation|GO:0009414|8253194|IEP go_function glutathione transferase activity|GO:0004364||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product glutathione S-transferase 6 note glutathione S-transferase 6 (GSTF6); FUNCTIONS IN: glutathione transferase activity, cobalt ion binding; INVOLVED IN: response to oxidative stress, response to water deprivation, toxin catabolic process, response to stress; LOCATED IN: mitochondrion, cytoplasm; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase 7 (TAIR:AT1G02920.1). protein_id AT1G02930.2p transcript_id AT1G02930.2 protein_id AT1G02930.2p transcript_id AT1G02930.2
At1g02940	chr1:000663079	0.0	C/663079-663545,663615-663663,663760-663902,664017-664128	AT1G02940.1 CDS glutathione S-transferase (class phi) 5 [TAIR10] CDS gene_syn ATGSTF5, F22D16.6, F22D16_6, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, GSTF5, glutathione S-transferase (class phi) 5 gene GSTF5 function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cytoplasm|GO:0005737|12090627|NAS go_component mitochondrion|GO:0005739|14671022|IDA go_process toxin catabolic process|GO:0009407|12090627|TAS go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase (class phi) 5 note glutathione S-transferase (class phi) 5 (GSTF5); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: N-terminal protein myristoylation, toxin catabolic process; LOCATED IN: mitochondrion, cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase F4 (TAIR:AT1G02950.3); Has 13934 Blast hits to 13925 proteins in 1335 species: Archae - 2; Bacteria - 8056; Metazoa - 1678; Fungi - 823; Plants - 1107; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink). protein_id AT1G02940.1p transcript_id AT1G02940.1 protein_id AT1G02940.1p transcript_id AT1G02940.1
AT1G02940	chr1:000663079	0.0	C/663079-663545,663615-663663,663760-663902,664017-664128	AT1G02940.4 AT1G02940.4 CDS glutathione S-transferase (class phi) 5
AT1G02940	chr1:000663079	0.0	C/663079-663545,663615-663663,663760-663902,664017-664130,664205-664241	AT1G02940.3 AT1G02940.3 CDS glutathione S-transferase (class phi) 5
AT1G02940	chr1:000663079	0.0	C/663079-663545,663615-663663,663760-663902,664017-664130,664205-664277	AT1G02940.2 AT1G02940.2 CDS glutathione S-transferase (class phi) 5
At1g02950	chr1:000665308	0.0	C/665308-665777,665858-665910,666114-666244	AT1G02950.4 CDS glutathione S-transferase F4 [TAIR10] CDS gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GST31, GSTF4, glutathione S-transferase F4 gene GSTF4 function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase F4 note glutathione S-transferase F4 (GSTF4); CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933); BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class phi) 5 (TAIR:AT1G02940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G02950.4p transcript_id AT1G02950.4 protein_id AT1G02950.4p transcript_id AT1G02950.4
At1g02950	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666256,666351-666420	AT1G02950.1 CDS glutathione S-transferase F4 [TAIR10] CDS gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GST31, GSTF4, glutathione S-transferase F4 gene GSTF4 function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase F4 note glutathione S-transferase F4 (GSTF4); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class phi) 5 (TAIR:AT1G02940.1); Has 7141 Blast hits to 7136 proteins in 1104 species: Archae - 0; Bacteria - 3457; Metazoa - 949; Fungi - 470; Plants - 873; Viruses - 0; Other Eukaryotes - 1392 (source: NCBI BLink). protein_id AT1G02950.1p transcript_id AT1G02950.1 protein_id AT1G02950.1p transcript_id AT1G02950.1
At1g02950	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666256,666351-666420	AT1G02950.3 CDS glutathione S-transferase F4 [TAIR10] CDS gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GST31, GSTF4, glutathione S-transferase F4 gene GSTF4 function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase F4 note glutathione S-transferase F4 (GSTF4); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class phi) 5 (TAIR:AT1G02940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02950.3p transcript_id AT1G02950.3 protein_id AT1G02950.3p transcript_id AT1G02950.3
AT1G02950	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666256,666351-666456	AT1G02950.5 AT1G02950.5 CDS glutathione S-transferase F4
At1g02950	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666262,666351-666420	AT1G02950.2 CDS glutathione S-transferase F4 [TAIR10] CDS gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GST31, GSTF4, glutathione S-transferase F4 gene GSTF4 function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase F4 note glutathione S-transferase F4 (GSTF4); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class phi) 5 (TAIR:AT1G02940.1); Has 7164 Blast hits to 7159 proteins in 1104 species: Archae - 0; Bacteria - 3467; Metazoa - 957; Fungi - 470; Plants - 884; Viruses - 0; Other Eukaryotes - 1386 (source: NCBI BLink). protein_id AT1G02950.2p transcript_id AT1G02950.2 protein_id AT1G02950.2p transcript_id AT1G02950.2
At1g02952	chr1:000665354	0.0	W/665354-665445,665895-665976,666120-666367	AT1G02952.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G02950 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G02952.1
At1g02960	chr1:000667002	0.0	C/667002-667068,667151-667281,667373-667437,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.1 CDS kinetochore protein, putative [TAIR10] CDS gene_syn F22D16.4, F22D16_4 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits to 82 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G02960.1p transcript_id AT1G02960.1 protein_id AT1G02960.1p transcript_id AT1G02960.1
At1g02960	chr1:000667002	0.0	C/667002-667068,667151-667281,667373-667464,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.2 CDS kinetochore protein, putative [TAIR10] CDS gene_syn F22D16.4, F22D16_4 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 100 Blast hits to 99 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 26; Fungi - 13; Plants - 29; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). protein_id AT1G02960.2p transcript_id AT1G02960.2 protein_id AT1G02960.2p transcript_id AT1G02960.2
At1g02960	chr1:000667325	0.0	C/667325-667437,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.3 CDS kinetochore protein, putative [TAIR10] CDS gene_syn F22D16.4, F22D16_4 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02960.3p transcript_id AT1G02960.3 protein_id AT1G02960.3p transcript_id AT1G02960.3
AT1G02960	chr1:000667325	0.0	C/667325-667464,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.5 AT1G02960.5 CDS kinetochore protein, putative
AT1G02960	chr1:000667503	0.0	C/667503-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.4 AT1G02960.4 CDS kinetochore protein, putative
AT1G02960	chr1:000667503	0.0	C/667503-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.6 AT1G02960.6 CDS kinetochore protein, putative
At1g02965	chr1:000671661	0.0	C/671661-671783,671919-671974,672106-672145,672332-672406,672518-672548,672651-672814	AT1G02965.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02960.3); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G02965.1p transcript_id AT1G02965.1 protein_id AT1G02965.1p transcript_id AT1G02965.1
At1g02970	chr1:000673408	0.0	W/673408-673706,673964-674024,674099-674165,674441-674704,674813-674880,674968-675077,675187-675227,675340-675494,675592-675945,676044-676127	AT1G02970.1 CDS WEE1 kinase homolog [TAIR10] CDS gene_syn ATWEE1, F22D16.3, F22D16_3, WEE1, WEE1 kinase homolog, WEE1-KINASE gene WEE1 function Protein kinase that negatively regulates the entry into mitosis. go_process DNA replication checkpoint|GO:0000076|17209125|IEP go_process cell cycle arrest|GO:0007050|17209125|IEP go_function protein kinase activity|GO:0004672|16856985|IDA go_function kinase activity|GO:0016301||ISS product WEE1 kinase homolog note WEE1 kinase homolog (WEE1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.2); Has 100256 Blast hits to 98965 proteins in 4396 species: Archae - 165; Bacteria - 12308; Metazoa - 39873; Fungi - 10996; Plants - 18240; Viruses - 408; Other Eukaryotes - 18266 (source: NCBI BLink). protein_id AT1G02970.1p transcript_id AT1G02970.1 protein_id AT1G02970.1p transcript_id AT1G02970.1
At1g02980	chr1:000677869	0.0	W/677869-678002,678094-678193,678289-678522,678592-678873,678971-679060,679148-679288,679368-679490,679578-679730,679821-679997,680103-680264,680341-680484,680559-680777,680858-681025,681111-681212	AT1G02980.1 CDS cullin 2 [TAIR10] CDS gene_syn ATCUL2, CUL2, F22D16.2, F22D16_2, cullin 2 gene CUL2 function encodes an Arabidopsis cullin go_component chloroplast envelope|GO:0009941|12938931|IDA go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA go_function ubiquitin protein ligase binding|GO:0031625||IEA go_component SCF ubiquitin ligase complex|GO:0019005|12795696|ISS go_process cell cycle|GO:0007049||ISS product cullin 2 note cullin 2 (CUL2); FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: cell cycle, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, chloroplast envelope; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: Cullin family protein (TAIR:AT1G43140.1); Has 2240 Blast hits to 2201 proteins in 240 species: Archae - 0; Bacteria - 18; Metazoa - 947; Fungi - 508; Plants - 372; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink). protein_id AT1G02980.1p transcript_id AT1G02980.1 protein_id AT1G02980.1p transcript_id AT1G02980.1
AT1G02980	chr1:000677869	0.0	W/677869-678002,678094-678193,678289-678522,678592-678873,678971-679060,679148-679288,679368-679490,679578-679730,679821-679997,680103-680264,680341-680484,680559-680777,680858-681025,681111-681212	AT1G02980.2 AT1G02980.2 CDS cullin 2
At1g02990	chr1:000681724	0.0	C/681724-681921,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686597,686679-686751,686844-686884	AT1G02990.2 CDS hypothetical protein [TAIR10] CDS gene_syn F22D16.1, F22D16_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G02990.2p transcript_id AT1G02990.2 protein_id AT1G02990.2p transcript_id AT1G02990.2
At1g02990	chr1:000681724	0.0	C/681724-681921,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686605,686679-686751,686844-686996	AT1G02990.3 CDS hypothetical protein [TAIR10] CDS gene_syn F22D16.1, F22D16_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1). protein_id AT1G02990.3p transcript_id AT1G02990.3 protein_id AT1G02990.3p transcript_id AT1G02990.3
AT1G02990	chr1:000681724	0.0	C/681724-681921,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686605,686679-686751,686844-686996	AT1G02990.4 AT1G02990.4 CDS hypothetical protein
AT1G02990	chr1:000681724	0.0	C/681724-681921,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686605,686679-686751,686844-686996	AT1G02990.6 AT1G02990.6 CDS hypothetical protein
AT1G02990	chr1:000682069	0.0	C/682069-682092,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686605,686679-686751,686844-686996	AT1G02990.5 AT1G02990.5 CDS hypothetical protein
At1g02990	chr1:000683065	0.0	C/683065-683077,683175-683317,683402-684777,684864-685965,686056-686424,686505-686597,686679-686751,686844-686884	AT1G02990.1 CDS hypothetical protein [TAIR10] CDS gene_syn F22D16.1, F22D16_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (source: NCBI BLink). protein_id AT1G02990.1p transcript_id AT1G02990.1 protein_id AT1G02990.1p transcript_id AT1G02990.1
At1g03000	chr1:000688057	0.0	C/688057-688146,688281-688364,688458-688602,688679-688950,689036-689158,689251-689409,689532-689813,689985-690173,690399-690579,690757-690898,691121-691364,691443-692078,692175-692453	AT1G03000.1 CDS peroxin 6 [TAIR10] CDS gene_syn F10O3.18, F10O3_18, PEX6, peroxin 6 gene PEX6 function Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import. go_function nucleotide binding|GO:0000166||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP go_process protein import into peroxisome matrix|GO:0016558|14745029|IMP go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP go_function ATPase activity|GO:0016887||ISS product peroxin 6 note peroxin 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626; Bacteria - 13920; Metazoa - 5344; Fungi - 4031; Plants - 3389; Viruses - 33; Other Eukaryotes - 7693 (source: NCBI BLink). protein_id AT1G03000.1p transcript_id AT1G03000.1 protein_id AT1G03000.1p transcript_id AT1G03000.1
At1g03010	chr1:000693480	0.0	W/693480-693571,694117-694183,694280-695476,695547-695793,695887-696188	AT1G03010.1 CDS Phototropic-responsive NPH3 family protein [TAIR10] CDS gene_syn F10O3.17, F10O3_17 go_function signal transducer activity|GO:0004871||IEA go_process response to light stimulus|GO:0009416||ISS go_process pollen tube growth|GO:0009860|19714218|IEP go_function signal transducer activity|GO:0004871||ISS product Phototropic-responsive NPH3 family protein note Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus, pollen tube growth; EXPRESSED IN: leaf apex, inflorescence meristem, cauline leaf, root, flower; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT2G47860.1); Has 882 Blast hits to 854 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 870; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G03010.1p transcript_id AT1G03010.1 protein_id AT1G03010.1p transcript_id AT1G03010.1
AT1G03010	chr1:000694028	0.0	W/694028-694038,694117-694183,694280-695476,695547-695793,695887-696188	AT1G03010.2 AT1G03010.2 CDS Phototropic-responsive NPH3 family protein
AT1G03010	chr1:000694028	0.0	W/694028-694183,694280-695476,695547-695793,695887-696188	AT1G03010.3 AT1G03010.3 CDS Phototropic-responsive NPH3 family protein
At1g03020	chr1:000698207	0.0	C/698207-698515	AT1G03020.1 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn F10O3.16, F10O3_16 go_process cell redox homeostasis|GO:0045454||IEA go_function electron carrier activity|GO:0009055||IEA go_function protein disulfide oxidoreductase activity|GO:0015035||IEA go_component cellular_component|GO:0005575||ND go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS product Thioredoxin superfamily protein note Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G62930.1); Has 1690 Blast hits to 1687 proteins in 285 species: Archae - 0; Bacteria - 112; Metazoa - 344; Fungi - 348; Plants - 762; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). protein_id AT1G03020.1p transcript_id AT1G03020.1 protein_id AT1G03020.1p transcript_id AT1G03020.1
At1g03022	chr1:000699121	0.0	W/699121-699246	AT1G03022.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G03022.1p transcript_id AT1G03022.1 protein_id AT1G03022.1p transcript_id AT1G03022.1
At1g03030	chr1:000701621	0.0	W/701621-701681,701775-701875,701976-702019,702106-702183,702276-702468,702567-702597,702679-702737,702828-702901,703012-703098,703195-703256,703353-703381,703482-703568	AT1G03030.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F10O3.15, F10O3_15 go_component chloroplast|GO:0009507|18431481|IDA go_process metabolic process|GO:0008152||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||IEA go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA go_process biosynthetic process|GO:0009058||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); Has 3038 Blast hits to 3038 proteins in 1114 species: Archae - 9; Bacteria - 2199; Metazoa - 179; Fungi - 248; Plants - 85; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink). protein_id AT1G03030.1p transcript_id AT1G03030.1 protein_id AT1G03030.1p transcript_id AT1G03030.1
AT1G03030	chr1:000701621	0.0	W/701621-701681,701775-701875,701976-702019,702106-702183,702276-702468,702567-702597,702679-702737,702828-702901,703012-703098,703195-703256,703353-703447	AT1G03030.2 AT1G03030.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g03040	chr1:000704279	0.0	C/704279-704494,704588-704668,705064-705129,705302-705367,705534-705641,706101-706457	AT1G03040.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F10O3.14, F10O3_14 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G02590.2). protein_id AT1G03040.2p transcript_id AT1G03040.2 protein_id AT1G03040.2p transcript_id AT1G03040.2
At1g03040	chr1:000704279	0.0	C/704279-704494,704588-704668,705064-705129,705302-705367,705534-705656,706101-706457	AT1G03040.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F10O3.14, F10O3_14 go_component nucleus|GO:0005634||IEA go_process acetyl-CoA biosynthetic process from pyruvate|GO:0006086||IEA go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G02590.2); Has 2903 Blast hits to 2897 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 2882; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G03040.1p transcript_id AT1G03040.1 protein_id AT1G03040.1p transcript_id AT1G03040.1
AT1G03040	chr1:000704279	0.0	C/704279-704668,705064-705129,705302-705367,705534-705656,706101-706457	AT1G03040.3 AT1G03040.3 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g03050	chr1:000707726	0.0	W/707726-708189,708304-708509,708601-709467,709598-709860	AT1G03050.1 CDS ENTH/ANTH/VHS superfamily protein [TAIR10] CDS gene_syn F10O3.13, F10O3_13 go_component clathrin coat|GO:0030118||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_process clathrin coat assembly|GO:0048268||IEA go_function phospholipid binding|GO:0005543||IEA go_function phosphatidylinositol binding|GO:0005545||IEA go_function clathrin binding|GO:0030276||IEA go_function binding|GO:0005488||ISS product ENTH/ANTH/VHS superfamily protein note ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: N-terminal protein myristoylation, clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT4G02650.1); Has 1509 Blast hits to 1324 proteins in 217 species: Archae - 4; Bacteria - 48; Metazoa - 522; Fungi - 214; Plants - 422; Viruses - 12; Other Eukaryotes - 287 (source: NCBI BLink). protein_id AT1G03050.1p transcript_id AT1G03050.1 protein_id AT1G03050.1p transcript_id AT1G03050.1
At1g03055	chr1:000710102	0.0	C/710102-710136,710241-710333,710695-710801,710955-711016,711092-711184,711263-711408,711505-711763	AT1G03055.1 CDS beta-carotene isomerase D27-like protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). protein_id AT1G03055.1p transcript_id AT1G03055.1 protein_id AT1G03055.1p transcript_id AT1G03055.1
At1g03055	chr1:000710912	0.0	C/710912-711016,711092-711184,711263-711408,711505-711763	AT1G03055.2 CDS beta-carotene isomerase D27-like protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03055.2p transcript_id AT1G03055.2 protein_id AT1G03055.2p transcript_id AT1G03055.2
AT1G03060	chr1:000712971	0.0	C/712971-714206,714317-714463,714558-714864,715007-715315,715660-718415,718503-718662,718935-720585,720681-721795,721905-722007,722116-722815,722966-724119,724275-724389,724681-724746,724890-725081,725236-725409,725552-725608,725689-725824,726037-726122,726275-726344,726710-726891	AT1G03060.3 AT1G03060.3 CDS Beige/BEACH domain ;WD domain, G-beta repeat protein
AT1G03060	chr1:000712971	0.0	C/712971-714206,714317-714463,714558-714864,715007-715315,715660-718415,718503-718662,718935-720585,720681-721795,721905-722007,722116-722815,722966-724119,724275-724389,724681-724746,724890-725081,725236-725409,725552-725608,725689-725824,726037-726122,726275-726347,726710-726891	AT1G03060.4 AT1G03060.4 CDS Beige/BEACH domain ;WD domain, G-beta repeat protein
AT1G03060	chr1:000712971	0.0	C/712971-714206,714317-714463,714558-714864,715007-715315,715660-718662,718935-720585,720681-721795,721905-722007,722116-722815,722966-724119,724275-724389,724681-724746,724890-725081,725236-725409,725552-725608,725689-725824,726037-726122,726275-726344,726710-726891	AT1G03060.2 AT1G03060.2 CDS Beige/BEACH domain ;WD domain, G-beta repeat protein
At1g03060	chr1:000712971	0.0	C/712971-714206,714317-714463,714558-714864,715007-715315,715660-718662,718935-720585,720681-721795,721905-722007,722116-722815,722966-724119,724275-724389,724681-724746,724890-725081,725236-725409,725552-725608,725689-725824,726037-726122,726275-726347,726710-726891	AT1G03060.1 CDS Beige/BEACH domain ;WD domain, G-beta repeat protein [TAIR10] CDS gene_syn F10O3.12, F10O3_12, SPI, SPIRRIG gene SPI function Encodes a WD/BEACH domain protein involved in cell morphogenesis. go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process vacuole organization|GO:0007033|19392685|IMP go_process signal transduction|GO:0007165||ISS go_process multidimensional cell growth|GO:0009825|12690443|IMP go_process trichome morphogenesis|GO:0010090|12690443|IMP product Beige/BEACH domain ;WD domain, G-beta repeat protein note SPIRRIG (SPI); FUNCTIONS IN: binding; INVOLVED IN: signal transduction, multidimensional cell growth, vacuole organization, trichome morphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Beige/BEACH domain ;WD domain, G-beta repeat protein (TAIR:AT4G02660.1); Has 8491 Blast hits to 6383 proteins in 382 species: Archae - 4; Bacteria - 1376; Metazoa - 3669; Fungi - 1335; Plants - 868; Viruses - 0; Other Eukaryotes - 1239 (source: NCBI BLink). protein_id AT1G03060.1p transcript_id AT1G03060.1 protein_id AT1G03060.1p transcript_id AT1G03060.1
At1g03070	chr1:000730148	0.0	W/730148-730415,730497-730610,730916-731073,731176-731379	AT1G03070.1 CDS Bax inhibitor-1 family protein [TAIR10] CDS gene_syn F10O3.11, F10O3_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function glutamate binding|GO:0016595||ISS product Bax inhibitor-1 family protein note Bax inhibitor-1 family protein; CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT4G02690.1); Has 5593 Blast hits to 5593 proteins in 1573 species: Archae - 0; Bacteria - 3054; Metazoa - 856; Fungi - 144; Plants - 197; Viruses - 83; Other Eukaryotes - 1259 (source: NCBI BLink). protein_id AT1G03070.1p transcript_id AT1G03070.1 protein_id AT1G03070.1p transcript_id AT1G03070.1
At1g03070	chr1:000730148	0.0	W/730148-730415,730497-730610,730916-731073,731176-731379	AT1G03070.2 CDS Bax inhibitor-1 family protein [TAIR10] CDS gene_syn F10O3.11, F10O3_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function glutamate binding|GO:0016595||ISS product Bax inhibitor-1 family protein note Bax inhibitor-1 family protein; FUNCTIONS IN: glutamate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT4G02690.1). protein_id AT1G03070.2p transcript_id AT1G03070.2 protein_id AT1G03070.2p transcript_id AT1G03070.2
AT1G03070	chr1:000730148	0.0	W/730148-730415,730497-730610,730916-731073,731176-731379	AT1G03070.3 AT1G03070.3 CDS Bax inhibitor-1 family protein
At1g03080	chr1:000731794	0.0	C/731794-732741,732928-737081,737233-737332	AT1G03080.1 CDS kinase interacting (KIP1-like) family protein [TAIR10] CDS gene_syn F10O3.10, F10O3_10 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product kinase interacting (KIP1-like) family protein note kinase interacting (KIP1-like) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT3G22790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G03080.1p transcript_id AT1G03080.1 protein_id AT1G03080.1p transcript_id AT1G03080.1
AT1G03080	chr1:000731794	0.0	C/731794-732741,732928-737081,737233-737332	AT1G03080.2 AT1G03080.2 CDS kinase interacting (KIP1-like) family protein
AT1G03080	chr1:000731794	0.0	C/731794-732741,732928-737081,737233-737332	AT1G03080.3 AT1G03080.3 CDS kinase interacting (KIP1-like) family protein
At1g03090	chr1:000739715	0.0	W/739715-740050,740124-740245,740355-740502,740620-740757,740970-741065,741148-741207,741509-741601,741684-741795,741946-742050,742181-742317,742502-742736,742822-742982,743090-743203,743301-743546,743620-743716,743815-743819	AT1G03090.2 CDS methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) [TAIR10] CDS gene_syn MCCA gene MCCA function MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. go_component mitochondrion|GO:0005739|18385124|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component mitochondrion|GO:0005739|12068107|IDA go_process leucine catabolic process|GO:0006552|12068107|IDA go_function methylcrotonoyl-CoA carboxylase activity|GO:0004485|12068107|IDA go_function cobalt ion binding|GO:0050897|20018591|IDA product methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) note MCCA; FUNCTIONS IN: cobalt ion binding, methylcrotonoyl-CoA carboxylase activity; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), PreATP-grasp-like fold (InterPro:IPR016185), Biotin-binding site (InterPro:IPR001882), Biotin carboxylation domain (InterPro:IPR011764), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Rudiment single hybrid motif (InterPro:IPR011054), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: acetyl Co-enzyme a carboxylase biotin carboxylase subunit (TAIR:AT5G35360.1); Has 41492 Blast hits to 34824 proteins in 3674 species: Archae - 718; Bacteria - 26555; Metazoa - 1797; Fungi - 1117; Plants - 802; Viruses - 0; Other Eukaryotes - 10503 (source: NCBI BLink). protein_id AT1G03090.2p transcript_id AT1G03090.2 protein_id AT1G03090.2p transcript_id AT1G03090.2
At1g03090	chr1:000739715	0.0	W/739715-740050,740124-740245,740355-740502,740620-740757,740970-741065,741509-741601,741684-741795,741946-742050,742181-742317,742502-742736,742822-742982,743090-743203,743301-743546,743620-743716,743815-743819	AT1G03090.1 CDS methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) [TAIR10] CDS gene_syn MCCA gene MCCA function MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. go_component mitochondrion|GO:0005739|18385124|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component mitochondrion|GO:0005739|12068107|IDA go_process leucine catabolic process|GO:0006552|12068107|IDA go_function methylcrotonoyl-CoA carboxylase activity|GO:0004485|12068107|IDA go_function cobalt ion binding|GO:0050897|20018591|IDA product methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) note MCCA; FUNCTIONS IN: cobalt ion binding, methylcrotonoyl-CoA carboxylase activity; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), PreATP-grasp-like fold (InterPro:IPR016185), Biotin-binding site (InterPro:IPR001882), Biotin carboxylation domain (InterPro:IPR011764), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Rudiment single hybrid motif (InterPro:IPR011054), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: acetyl Co-enzyme a carboxylase biotin carboxylase subunit (TAIR:AT5G35360.1); Has 35200 Blast hits to 30603 proteins in 3073 species: Archae - 603; Bacteria - 22615; Metazoa - 922; Fungi - 892; Plants - 784; Viruses - 0; Other Eukaryotes - 9384 (source: NCBI BLink). protein_id AT1G03090.1p transcript_id AT1G03090.1 protein_id AT1G03090.1p transcript_id AT1G03090.1
At1g03100	chr1:000744026	0.0	C/744026-746407	AT1G03100.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F10O3.8, F10O3_8 product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G17616.1); Has 9904 Blast hits to 5133 proteins in 176 species: Archae - 0; Bacteria - 34; Metazoa - 111; Fungi - 31; Plants - 9502; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). protein_id AT1G03100.1p transcript_id AT1G03100.1 protein_id AT1G03100.1p transcript_id AT1G03100.1
At1g03103	chr1:000747219	0.0	W/747219-747531,747622-747726,747858-747955	AT1G03103.1 CDS Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [TAIR10] CDS go_process lipid transport|GO:0006869||IEA go_component membrane|GO:0016020|11152613|ISS go_function molecular_function|GO:0003674||ND product Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein note Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03103.1p transcript_id AT1G03103.1 protein_id AT1G03103.1p transcript_id AT1G03103.1
At1g03106	chr1:000748442	0.0	C/748442-748639	AT1G03106.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03106.1p transcript_id AT1G03106.1 protein_id AT1G03106.1p transcript_id AT1G03106.1
At1g03110	chr1:000749359	0.0	W/749359-749495,749785-749949,750118-750298,750416-750472,750557-750627,750796-750874,750957-751016,751120-751223,751297-751357,751428-751796	AT1G03110.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn F10O3.6, F10O3_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT2G21390.1); Has 13545 Blast hits to 7977 proteins in 481 species: Archae - 46; Bacteria - 4157; Metazoa - 4042; Fungi - 2887; Plants - 1145; Viruses - 0; Other Eukaryotes - 1268 (source: NCBI BLink). protein_id AT1G03110.1p transcript_id AT1G03110.1 protein_id AT1G03110.1p transcript_id AT1G03110.1
At1g03120	chr1:000752271	0.0	W/752271-752660,752982-753140	AT1G03120.1 CDS responsive to abscisic acid 28 [TAIR10] CDS gene_syn ATRAB28, F10O3.5, F10O3_5, RAB28, responsive to abscisic acid 28 gene RAB28 function Atrab28 plays a role in the ion cell balance during late embryogenesis and germination. go_component nucleus|GO:0005634|12175017|IDA go_component nucleus|GO:0005634|12175017|ISS go_component nucleolus|GO:0005730|12175017|IDA go_process cellular ion homeostasis|GO:0006873|12175017|IMP go_process multicellular organismal development|GO:0007275||ISS go_process seed germination|GO:0009845|12175017|IMP go_process response to lithium ion|GO:0010226|12175017|IMP product responsive to abscisic acid 28 note responsive to abscisic acid 28 (RAB28); CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: Seed maturation protein (TAIR:AT3G22490.1); Has 159 Blast hits to 126 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G03120.1p transcript_id AT1G03120.1 protein_id AT1G03120.1p transcript_id AT1G03120.1
AT1G03120	chr1:000752271	0.0	W/752271-752678	AT1G03120.2 AT1G03120.2 CDS responsive to abscisic acid 28
At1g03130	chr1:000753528	0.0	C/753528-754142	AT1G03130.1 CDS photosystem I subunit D-2 [TAIR10] CDS gene_syn PSAD-2, PSI-D, photosystem I subunit D-2 gene PSAD-2 function Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2) go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component thylakoid|GO:0009579|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_process photosynthesis|GO:0015979||IEA go_component photosystem I reaction center|GO:0009538||ISS go_process photosynthesis|GO:0015979||ISS go_function molecular_function|GO:0003674||ND product photosystem I subunit D-2 note photosystem I subunit D-2 (PSAD-2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I protein PsaD (InterPro:IPR003685); BEST Arabidopsis thaliana protein match is: photosystem I subunit D-1 (TAIR:AT4G02770.1); Has 509 Blast hits to 509 proteins in 136 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 3; Other Eukaryotes - 198 (source: NCBI BLink). protein_id AT1G03130.1p transcript_id AT1G03130.1 protein_id AT1G03130.1p transcript_id AT1G03130.1
At1g03140	chr1:000754471	0.0	C/754471-754890,755381-756223	AT1G03140.1 CDS splicing factor Prp18 family protein [TAIR10] CDS gene_syn F10O3.3, F10O3_3 go_component spliceosomal complex|GO:0005681||IEA go_process RNA splicing|GO:0008380||IEA go_component spliceosomal complex|GO:0005681||ISS go_process RNA splicing|GO:0008380||ISS product splicing factor Prp18 family protein note splicing factor Prp18 family protein; INVOLVED IN: RNA splicing; LOCATED IN: spliceosomal complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), Splicing factor motif (InterPro:IPR003648), Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54590.1); Has 624 Blast hits to 613 proteins in 206 species: Archae - 0; Bacteria - 5; Metazoa - 235; Fungi - 175; Plants - 58; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). protein_id AT1G03140.1p transcript_id AT1G03140.1 protein_id AT1G03140.1p transcript_id AT1G03140.1
At1g03150	chr1:000756461	0.0	W/756461-756538,756645-756735,757554-757686,757937-758006,758199-758259,758350-758441	AT1G03150.1 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein [TAIR10] CDS gene_syn F10O3.2, F10O3_2 go_process metabolic process|GO:0008152||IEA go_function N-acetyltransferase activity|GO:0008080||IEA go_component cellular_component|GO:0005575||ND go_process metabolic process|GO:0008152||ISS go_function N-acetyltransferase activity|GO:0008080||ISS product Acyl-CoA N-acyltransferases (NAT) superfamily protein note Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 2433 Blast hits to 2433 proteins in 772 species: Archae - 233; Bacteria - 716; Metazoa - 629; Fungi - 398; Plants - 148; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink). protein_id AT1G03150.1p transcript_id AT1G03150.1 protein_id AT1G03150.1p transcript_id AT1G03150.1
AT1G03160	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764831,765025-765047	AT1G03160.3 AT1G03160.3 CDS FZO-like
At1g03160	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764866,765025-765255,765485-765600,765753-766053	AT1G03160.1 CDS FZO-like [TAIR10] CDS gene_syn F10O3.1, F10O3_1, FZL, FZO-like gene FZL function A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization. go_component chloroplast|GO:0009507|18431481|IDA go_function thiamin-phosphate diphosphorylase activity|GO:0004789||IEA go_function GTP binding|GO:0005525||IEA go_component chloroplast membrane|GO:0031969|16617119|IDA go_process thylakoid membrane organization|GO:0010027|16617119|IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|16617119|IMP product FZO-like note FZO-like (FZL); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, GTP binding; INVOLVED IN: vegetative to reproductive phase transition of meristem, thylakoid membrane organization; LOCATED IN: chloroplast membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), GTP-binding protein, HSR1-related (InterPro:IPR002917); Has 4318 Blast hits to 3768 proteins in 1124 species: Archae - 53; Bacteria - 3501; Metazoa - 428; Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink). protein_id AT1G03160.1p transcript_id AT1G03160.1 protein_id AT1G03160.1p transcript_id AT1G03160.1
At1g03160	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764931,765025-765091	AT1G03160.2 CDS FZO-like [TAIR10] CDS gene_syn F10O3.1, F10O3_1, FZL, FZO-like gene FZL function A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization. go_component chloroplast|GO:0009507|18431481|IDA go_function GTPase activity|GO:0003924||IEA go_function thiamin-phosphate diphosphorylase activity|GO:0004789||IEA go_function GTP binding|GO:0005525||IEA go_component chloroplast membrane|GO:0031969|16617119|IDA go_process thylakoid membrane organization|GO:0010027|16617119|IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|16617119|IMP product FZO-like note FZO-like (FZL); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, GTP binding, GTPase activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, thylakoid membrane organization; LOCATED IN: chloroplast membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), Protein synthesis factor, GTP-binding (InterPro:IPR000795); Has 4303 Blast hits to 3755 proteins in 1119 species: Archae - 53; Bacteria - 3491; Metazoa - 428; Fungi - 84; Plants - 61; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink). protein_id AT1G03160.2p transcript_id AT1G03160.2 protein_id AT1G03160.2p transcript_id AT1G03160.2
AT1G03160	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,764157-764597,764699-764866,765025-765255,765485-765600,765753-766053	AT1G03160.4 AT1G03160.4 CDS FZO-like
AT1G03165	chr1:000766363	0.0	W/766363-766380,767142-767324	AT1G03165.1 AT1G03165.1 CDS hypothetical protein
At1g03170	chr1:000769805	0.0	W/769805-770527	AT1G03170.1 CDS FANTASTIC four-like protein (DUF3049) [TAIR10] CDS gene_syn F15K9.22, F15K9_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF3049) note Protein of unknown function (DUF3049); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT4G02810.1); Has 91 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03170.1p transcript_id AT1G03170.1 protein_id AT1G03170.1p transcript_id AT1G03170.1
At1g03180	chr1:000773543	0.0	W/773543-773691,774096-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.1 CDS non-structural protein [TAIR10] CDS gene_syn F15K9.21, F15K9_21 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 36 Blast hits to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03180.1p transcript_id AT1G03180.1 protein_id AT1G03180.1p transcript_id AT1G03180.1
AT1G03180	chr1:000773543	0.0	W/773543-773691,774096-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.5 AT1G03180.5 CDS non-structural protein
At1g03180	chr1:000773989	0.0	W/773989-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.2 CDS non-structural protein [TAIR10] CDS gene_syn F15K9.21, F15K9_21 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03180.2p transcript_id AT1G03180.2 protein_id AT1G03180.2p transcript_id AT1G03180.2
AT1G03180	chr1:000774282	0.0	W/774282-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.3 AT1G03180.3 CDS non-structural protein
AT1G03180	chr1:000774282	0.0	W/774282-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.4 AT1G03180.4 CDS non-structural protein
AT1G03180	chr1:000774282	0.0	W/774282-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.6 AT1G03180.6 CDS non-structural protein
At1g03190	chr1:000775822	0.0	W/775822-776355,776482-776762,777155-777237,777336-777739,777872-778065,778153-778333,778486-778610,778807-778896,779002-779080,779174-779250,779538-779646,779744-779863	AT1G03190.1 CDS RAD3-like DNA-binding helicase protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, ATXPD, ULTRAVIOLET HYPERSENSITIVE 6, UVH6 gene UVH6 function UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response. go_component nucleus|GO:0005634||IEA go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function ATP-dependent DNA helicase activity|GO:0004003||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA go_process DNA repair|GO:0006281|12857822|IMP go_process response to heat|GO:0009408|15923322|IMP go_process response to heat|GO:0009408|9414549|IMP go_process response to UV|GO:0009411|9414549|IMP product RAD3-like DNA-binding helicase protein note ULTRAVIOLET HYPERSENSITIVE 6 (UVH6); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, response to UV, response to heat; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Xeroderma pigmentosum group D protein (InterPro:IPR001945), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Protein of unknown function DUF1227 (InterPro:IPR010643); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3290 Blast hits to 2576 proteins in 779 species: Archae - 308; Bacteria - 1186; Metazoa - 653; Fungi - 359; Plants - 198; Viruses - 2; Other Eukaryotes - 584 (source: NCBI BLink). protein_id AT1G03190.1p transcript_id AT1G03190.1 protein_id AT1G03190.1p transcript_id AT1G03190.1
At1g03190	chr1:000775822	0.0	W/775822-776355,776482-776762,777155-777237,777336-777739,777872-778065,778153-778333,778486-778610,778807-778896,779002-779080,779174-779250,779538-779646,779744-779863	AT1G03190.2 CDS RAD3-like DNA-binding helicase protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, ATXPD, ULTRAVIOLET HYPERSENSITIVE 6, UVH6 gene UVH6 function UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response. go_component nucleus|GO:0005634||IEA go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function ATP-dependent DNA helicase activity|GO:0004003||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA go_process DNA repair|GO:0006281|12857822|IMP go_process response to heat|GO:0009408|15923322|IMP go_process response to heat|GO:0009408|9414549|IMP go_process response to UV|GO:0009411|9414549|IMP product RAD3-like DNA-binding helicase protein note ULTRAVIOLET HYPERSENSITIVE 6 (UVH6); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, response to UV, response to heat; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Xeroderma pigmentosum group D protein (InterPro:IPR001945), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Protein of unknown function DUF1227 (InterPro:IPR010643); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3290 Blast hits to 2576 proteins in 779 species: Archae - 308; Bacteria - 1186; Metazoa - 653; Fungi - 359; Plants - 198; Viruses - 2; Other Eukaryotes - 584 (source: NCBI BLink). protein_id AT1G03190.2p transcript_id AT1G03190.2 protein_id AT1G03190.2p transcript_id AT1G03190.2
At1g03200	chr1:000780755	0.0	W/780755-780836,781081-781124	AT1G03200.1 CDS hypothetical protein [TAIR10] CDS gene_syn F15K9.24, F15K9_24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03240.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03200.1p transcript_id AT1G03200.1 protein_id AT1G03200.1p transcript_id AT1G03200.1
At1g03210	chr1:000782948	0.0	W/782948-783175,783318-783596,783681-783842,783943-784026,784133-784240	AT1G03210.1 CDS Phenazine biosynthesis PhzC/PhzF protein [TAIR10] CDS gene_syn F15K9.19, F15K9_19 go_component endomembrane system|GO:0012505||IEA go_process biosynthetic process|GO:0009058||IEA go_function catalytic activity|GO:0003824||IEA go_process biosynthetic process|GO:0009058||ISS go_function catalytic activity|GO:0003824||ISS product Phenazine biosynthesis PhzC/PhzF protein note Phenazine biosynthesis PhzC/PhzF protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT4G02860.1); Has 4142 Blast hits to 4139 proteins in 1263 species: Archae - 52; Bacteria - 3137; Metazoa - 121; Fungi - 124; Plants - 90; Viruses - 0; Other Eukaryotes - 618 (source: NCBI BLink). protein_id AT1G03210.1p transcript_id AT1G03210.1 protein_id AT1G03210.1p transcript_id AT1G03210.1
AT1G03210	chr1:000782948	0.0	W/782948-783175,783318-783842,783943-784026,784133-784240	AT1G03210.2 AT1G03210.2 CDS Phenazine biosynthesis PhzC/PhzF protein
At1g03220	chr1:000787143	0.0	W/787143-788444	AT1G03220.1 CDS Eukaryotic aspartyl protease family protein [TAIR10] CDS gene_syn F15K9.17, F15K9_17 go_component cell wall|GO:0005618|14595688|IDA go_component cell wall|GO:0005618|15593128|IDA go_component plant-type cell wall|GO:0009505|17526915|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_function aspartic-type endopeptidase activity|GO:0004190||IEA go_component plasma membrane|GO:0005886|16618929|IDA go_process response to salt stress|GO:0009651|11351099|IEP product Eukaryotic aspartyl protease family protein note Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G03230.1); Has 1398 Blast hits to 1391 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1396; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G03220.1p transcript_id AT1G03220.1 protein_id AT1G03220.1p transcript_id AT1G03220.1
At1g03230	chr1:000790110	0.0	W/790110-791414	AT1G03230.1 CDS Eukaryotic aspartyl protease family protein [TAIR10] CDS gene_syn F15K9.16, F15K9_16 go_component cell wall|GO:0005618|15593128|IDA go_component plant-type cell wall|GO:0009505|17526915|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_function aspartic-type endopeptidase activity|GO:0004190||IEA product Eukaryotic aspartyl protease family protein note Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G03220.1); Has 1391 Blast hits to 1386 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1391; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03230.1p transcript_id AT1G03230.1 protein_id AT1G03230.1p transcript_id AT1G03230.1
At1g03240	chr1:000792418	0.0	C/792418-792461,792754-792838	AT1G03240.1 CDS hypothetical protein [TAIR10] CDS gene_syn F15K9.25, F15K9_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03200.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03240.1p transcript_id AT1G03240.1 protein_id AT1G03240.1p transcript_id AT1G03240.1
AT1G03250	chr1:000793576	0.0	C/793576-793731,793829-793930,794022-794180,794328-794410,794542-794605	AT1G03250.3 AT1G03250.3 CDS R3H domain protein
At1g03250	chr1:000793576	0.0	C/793576-793731,793829-793930,794022-794180,794328-794410,794542-794650,794899-794969,795102-795159	AT1G03250.1 CDS R3H domain protein [TAIR10] CDS gene_syn F15K9.15, F15K9_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 89 Blast hits to 89 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G03250.1p transcript_id AT1G03250.1 protein_id AT1G03250.1p transcript_id AT1G03250.1
At1g03250	chr1:000793576	0.0	C/793576-793731,793829-793930,794022-794198,794328-794410,794542-794650,794899-794969,795102-795159	AT1G03250.2 CDS R3H domain protein [TAIR10] CDS gene_syn F15K9.15, F15K9_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. protein_id AT1G03250.2p transcript_id AT1G03250.2 protein_id AT1G03250.2p transcript_id AT1G03250.2
AT1G03250	chr1:000793823	0.0	C/793823-793930,794022-794180,794328-794410,794542-794650,794899-794969,795102-795159	AT1G03250.4 AT1G03250.4 CDS R3H domain protein
At1g03260	chr1:000795678	0.0	C/795678-795856,795988-796018,796536-796628,796776-796892,797041-797127,797313-797411,797546-797600,797728-797789,798001-798102	AT1G03260.1 CDS SNARE associated Golgi protein family [TAIR10] CDS gene_syn F15K9.14, F15K9_14 go_component endomembrane system|GO:0012505||IEA product SNARE associated Golgi protein family note SNARE associated Golgi protein family; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT5G19070.1); Has 5379 Blast hits to 5379 proteins in 1283 species: Archae - 29; Bacteria - 3492; Metazoa - 274; Fungi - 131; Plants - 303; Viruses - 0; Other Eukaryotes - 1150 (source: NCBI BLink). protein_id AT1G03260.1p transcript_id AT1G03260.1 protein_id AT1G03260.1p transcript_id AT1G03260.1
At1g03270	chr1:000799191	0.0	W/799191-799431,799641-799717,799827-799910,799999-800112,800382-800465,800629-800700,800972-801039,801185-801272,801356-801429,801517-801889,802012-802058,802163-802223,802320-802436	AT1G03270.1 CDS CBS domain protein with a domain protein (DUF21) [TAIR10] CDS gene_syn F15K9.13, F15K9_13 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product CBS domain-containing protein with a domain of unknown function (DUF21) note CBS domain-containing protein with a domain of unknown function (DUF21); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14240.1); Has 10325 Blast hits to 10105 proteins in 2459 species: Archae - 102; Bacteria - 7685; Metazoa - 330; Fungi - 275; Plants - 225; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink). protein_id AT1G03270.1p transcript_id AT1G03270.1 protein_id AT1G03270.1p transcript_id AT1G03270.1
At1g03280	chr1:000803635	0.0	W/803635-803687,803835-803957,804247-804367,804739-804852,804961-805070,805167-805350,805458-805652,805860-806087,806196-806409,806661-806758	AT1G03280.1 CDS Transcription factor TFIIE, alpha subunit [TAIR10] CDS gene_syn F15K9.12, F15K9_12 go_component endomembrane system|GO:0012505||IEA go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA go_function RNA polymerase II transcription factor activity|GO:0003702||IEA go_component transcription factor TFIIE complex|GO:0005673||ISS go_function transcription initiation factor activity|GO:0016986||ISS product Transcription factor TFIIE, alpha subunit note Transcription factor TFIIE, alpha subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT4G20340.1); Has 759 Blast hits to 706 proteins in 191 species: Archae - 5; Bacteria - 10; Metazoa - 313; Fungi - 190; Plants - 108; Viruses - 11; Other Eukaryotes - 122 (source: NCBI BLink). protein_id AT1G03280.1p transcript_id AT1G03280.1 protein_id AT1G03280.1p transcript_id AT1G03280.1
AT1G03280	chr1:000803635	0.0	W/803635-803687,803835-803957,804247-804367,804739-804852,804961-805070,805167-805350,805458-805652,805860-806087,806196-806409,806661-806758	AT1G03280.2 AT1G03280.2 CDS Transcription factor TFIIE, alpha subunit
AT1G03280	chr1:000803635	0.0	W/803635-803687,803835-803957,804247-804367,804739-804852,804961-805070,805167-805350,805458-805652,805860-806087,806196-806409,806661-806758	AT1G03280.3 AT1G03280.3 CDS Transcription factor TFIIE, alpha subunit
AT1G03290	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-808822,808913-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.5 AT1G03290.5 CDS ELKS/Rab6-interacting/CAST family protein, putative
AT1G03290	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-808822,808979-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.6 AT1G03290.6 CDS ELKS/Rab6-interacting/CAST family protein, putative
At1g03290	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.1 CDS ELKS/Rab6-interacting/CAST family protein, putative [TAIR10] CDS gene_syn F15K9.11, F15K9_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2); Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257; Bacteria - 2402; Metazoa - 5637; Fungi - 960; Plants - 675; Viruses - 54; Other Eukaryotes - 3602 (source: NCBI BLink). protein_id AT1G03290.1p transcript_id AT1G03290.1 protein_id AT1G03290.1p transcript_id AT1G03290.1
At1g03290	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.2 CDS ELKS/Rab6-interacting/CAST family protein, putative [TAIR10] CDS gene_syn F15K9.11, F15K9_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2). protein_id AT1G03290.2p transcript_id AT1G03290.2 protein_id AT1G03290.2p transcript_id AT1G03290.2
AT1G03290	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.3 AT1G03290.3 CDS ELKS/Rab6-interacting/CAST family protein, putative
AT1G03290	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.4 AT1G03290.4 CDS ELKS/Rab6-interacting/CAST family protein, putative
At1g03300	chr1:000811033	0.0	C/811033-811988,812030-813086	AT1G03300.1 CDS agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) [TAIR10] CDS gene_syn ATDUF1, DOMAIN OF UNKNOWN FUNCTION 724 1, DUF1, F15K9.10, F15K9_10 gene ATDUF1 function Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype go_function RNA binding|GO:0003723||IEA go_component nucleus|GO:0005634|19795213|IDA go_process biological_process|GO:0008150||ND product DOMAIN OF UNKNOWN FUNCTION 724 1 note DOMAIN OF UNKNOWN FUNCTION 724 1 (ATDUF1); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 656 Blast hits to 530 proteins in 96 species: Archae - 2; Bacteria - 31; Metazoa - 151; Fungi - 36; Plants - 287; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink). protein_id AT1G03300.1p transcript_id AT1G03300.1 protein_id AT1G03300.1p transcript_id AT1G03300.1
At1g03310	chr1:000813975	0.0	W/813975-816623	AT1G03310.1 CDS debranching enzyme 1 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA ISOAMYLASE 2, ATISA2, BE2, BRANCHING ENZYME 2, DBE1, F15K9.9, F15K9_9, ISA2, debranching enzyme 1 gene DBE1 function Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex. go_component chloroplast|GO:0009507|18431481|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_process amylopectin biosynthetic process|GO:0010021|18815382|IMP go_function alpha-amylase activity|GO:0004556||ISS go_function isoamylase activity|GO:0019156|15743447|IMP go_function isoamylase activity|GO:0019156|18815382|IDA product debranching enzyme 1 note debranching enzyme 1 (DBE1); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: carbohydrate metabolic process, amylopectin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1); Has 10041 Blast hits to 10011 proteins in 2123 species: Archae - 109; Bacteria - 8214; Metazoa - 136; Fungi - 197; Plants - 613; Viruses - 0; Other Eukaryotes - 772 (source: NCBI BLink). protein_id AT1G03310.1p transcript_id AT1G03310.1 protein_id AT1G03310.1p transcript_id AT1G03310.1
At1g03310	chr1:000813975	0.0	W/813975-816623	AT1G03310.2 CDS debranching enzyme 1 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA ISOAMYLASE 2, ATISA2, BE2, BRANCHING ENZYME 2, DBE1, F15K9.9, F15K9_9, ISA2, debranching enzyme 1 gene DBE1 function Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex. go_component chloroplast|GO:0009507|18431481|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_process amylopectin biosynthetic process|GO:0010021|18815382|IMP go_function alpha-amylase activity|GO:0004556||ISS go_function isoamylase activity|GO:0019156|15743447|IMP go_function isoamylase activity|GO:0019156|18815382|IDA product debranching enzyme 1 note debranching enzyme 1 (DBE1); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: carbohydrate metabolic process, amylopectin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03310.2p transcript_id AT1G03310.2 protein_id AT1G03310.2p transcript_id AT1G03310.2
At1g03320	chr1:000817027	0.0	W/817027-817096,817175-817767	AT1G03320.1 CDS hypothetical protein [TAIR10] CDS gene_syn F15K9.8, F15K9_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 1038 Blast hits to 683 proteins in 112 species: Archae - 4; Bacteria - 14; Metazoa - 318; Fungi - 117; Plants - 86; Viruses - 8; Other Eukaryotes - 491 (source: NCBI BLink). protein_id AT1G03320.1p transcript_id AT1G03320.1 protein_id AT1G03320.1p transcript_id AT1G03320.1
AT1G03325	chr1:000817053	0.0	C/817053-817178	AT1G03325.1 AT1G03325.1 CDS hypothetical protein
At1g03330	chr1:000818161	0.0	C/818161-818280,818920-819078,819295-819297	AT1G03330.1 CDS Small nuclear ribonucleoprotein family protein [TAIR10] CDS gene_syn F15K9.7, F15K9_7 go_component nucleus|GO:0005634||ISS go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS go_function molecular_function|GO:0003674||ND product Small nuclear ribonucleoprotein family protein note Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 762 Blast hits to 762 proteins in 209 species: Archae - 2; Bacteria - 0; Metazoa - 303; Fungi - 225; Plants - 97; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). protein_id AT1G03330.1p transcript_id AT1G03330.1 protein_id AT1G03330.1p transcript_id AT1G03330.1
At1g03340	chr1:000819712	0.0	W/819712-819783,819897-820077,820159-820501,820595-820666,820738-821227	AT1G03340.1 CDS hypothetical protein [TAIR10] CDS gene_syn F15K9.6, F15K9_6 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02920.1); Has 44 Blast hits to 41 proteins in 13 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03340.1p transcript_id AT1G03340.1 protein_id AT1G03340.1p transcript_id AT1G03340.1
At1g03350	chr1:000822834	0.0	C/822834-824246	AT1G03350.1 CDS BSD domain-containing protein [TAIR10] CDS gene_syn F15K9.5, F15K9_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product BSD domain-containing protein note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT4G13110.1); Has 10642 Blast hits to 5945 proteins in 665 species: Archae - 52; Bacteria - 3714; Metazoa - 2927; Fungi - 1314; Plants - 393; Viruses - 71; Other Eukaryotes - 2171 (source: NCBI BLink). protein_id AT1G03350.1p transcript_id AT1G03350.1 protein_id AT1G03350.1p transcript_id AT1G03350.1
At1g03360	chr1:000824653	0.0	W/824653-824813,824891-824992,825102-825147,825253-825342,825422-825487,825587-825655,825745-826179	AT1G03360.1 CDS ribosomal RNA processing 4 [TAIR10] CDS gene_syn ATRRP4, F15K9.4, F15K9_4, RRP4, ribosomal RNA processing 4 gene RRP4 go_component mitochondrion|GO:0005739||IEA go_function exonuclease activity|GO:0004527||ISS product ribosomal RNA processing 4 note ribosomal RNA processing 4 (RRP4); FUNCTIONS IN: exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 615 Blast hits to 615 proteins in 291 species: Archae - 147; Bacteria - 0; Metazoa - 136; Fungi - 134; Plants - 55; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). protein_id AT1G03360.1p transcript_id AT1G03360.1 protein_id AT1G03360.1p transcript_id AT1G03360.1
At1g03365	chr1:000827182	0.0	W/827182-829182,829721-830191	AT1G03365.1 CDS RING/U-box superfamily protein [TAIR10] CDS go_function zinc ion binding|GO:0008270||IEA product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G03000.2). protein_id AT1G03365.1p transcript_id AT1G03365.1 protein_id AT1G03365.1p transcript_id AT1G03365.1
AT1G03365	chr1:000827182	0.0	W/827182-829182,829721-830191	AT1G03365.2 AT1G03365.2 CDS RING/U-box superfamily protein
At1g03370	chr1:000830968	0.0	W/830968-831313,831420-832640,832753-832935,833084-833367,833454-833570,833694-833956,834254-834419,834514-834996	AT1G03370.1 CDS C2 calcium/lipid-binding and GRAM domain containing protein [TAIR10] CDS gene_syn F15K9.2, F15K9_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product C2 calcium/lipid-binding and GRAM domain containing protein note C2 calcium/lipid-binding and GRAM domain containing protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding and GRAM domain containing protein (TAIR:AT5G50170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G03370.1p transcript_id AT1G03370.1 protein_id AT1G03370.1p transcript_id AT1G03370.1
AT1G03370	chr1:000830968	0.0	W/830968-831313,831420-832640,832753-832935,833084-833367,833454-833570,833694-833960	AT1G03370.2 AT1G03370.2 CDS C2 calcium/lipid-binding and GRAM domain containing protein
At1g03380	chr1:000836155	0.0	W/836155-836328,836769-837233,837471-837908,838069-838314,838400-839227,839312-839469,839678-839805,839920-840362	AT1G03380.1 CDS homolog of yeast autophagy 18 (ATG18) G [TAIR10] CDS gene_syn ATATG18G, ATG18G, F21B7.1, homolog of yeast autophagy 18 (ATG18) G gene ATG18G go_process response to starvation|GO:0042594|15860012|IEP go_function molecular_function|GO:0003674||ND product homolog of yeast autophagy 18 (ATG18) G note homolog of yeast autophagy 18 (ATG18) G (ATG18G); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) H (TAIR:AT1G54710.1); Has 888 Blast hits to 884 proteins in 197 species: Archae - 0; Bacteria - 6; Metazoa - 334; Fungi - 309; Plants - 178; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). protein_id AT1G03380.1p transcript_id AT1G03380.1 protein_id AT1G03380.1p transcript_id AT1G03380.1
At1g03390	chr1:000841033	0.0	C/841033-842418	AT1G03390.1 CDS HXXXD-type acyl-transferase family protein [TAIR10] CDS gene_syn F21B7.2, F21B7_2 go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_process biological_process|GO:0008150||ND go_function transferase activity|GO:0016740||ISS product HXXXD-type acyl-transferase family protein note HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G41040.1); Has 2639 Blast hits to 2624 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 51; Plants - 2580; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G03390.1p transcript_id AT1G03390.1 protein_id AT1G03390.1p transcript_id AT1G03390.1
AT1G03395	chr1:000841738	0.0	W/841738-841746,842000-842158	AT1G03395.1 AT1G03395.1 CDS hypothetical protein
At1g03400	chr1:000842895	0.0	C/842895-843146,843231-843552,843677-844158	AT1G03400.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F21B7.39, F21B7_39 function A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03410.1); Has 8186 Blast hits to 8162 proteins in 1002 species: Archae - 0; Bacteria - 1123; Metazoa - 116; Fungi - 839; Plants - 4847; Viruses - 0; Other Eukaryotes - 1261 (source: NCBI BLink). protein_id AT1G03400.1p transcript_id AT1G03400.1 protein_id AT1G03400.1p transcript_id AT1G03400.1
AT1G03400	chr1:000842895	0.0	C/842895-843552,843677-844158	AT1G03400.2 AT1G03400.2 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
AT1G03410	chr1:000844782	0.0	C/844782-845033,845114-845435,845952-846463	AT1G03410.2 AT1G03410.2 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
At1g03410	chr1:000844782	0.0	C/844782-845033,845114-845435,845952-846574	AT1G03410.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn 2A6, F21B7.3 gene 2A6 go_component endomembrane system|GO:0012505||IEA go_function oxidoreductase activity|GO:0016491||IEA product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2A6; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03400.1); Has 8330 Blast hits to 8293 proteins in 997 species: Archae - 0; Bacteria - 1128; Metazoa - 114; Fungi - 883; Plants - 4883; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink). protein_id AT1G03410.1p transcript_id AT1G03410.1 protein_id AT1G03410.1p transcript_id AT1G03410.1
At1g03420	chr1:000846664	0.0	W/846664-847739	AT1G03420.1 [TAIR10] mRNA
At1g03420	chr1:000846664	0.0	W/846664-847739	AT1G03420 [TAIR10] TE pseudo gene_syn F21B7.4, F21B7_4, Sadhu4-2, sadhu non-coding retrotransposon 4-2 gene Sadhu4-2 function Member of Sadhu non-coding retrotransposon family note Transposable element gene
At1g03430	chr1:000848159	0.0	W/848159-848227,848367-848497,848642-848713,848808-848879,848998-849070,849179-849235	AT1G03430.1 CDS histidine-containing phosphotransfer factor 5 [TAIR10] CDS gene_syn AHP5, F21B7.5, histidine-containing phosphotransfer factor 5 gene AHP5 function Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). go_component nucleus|GO:0005634|17122069|IDA go_component cytoplasm|GO:0005737|17122069|IDA go_process two-component signal transduction system (phosphorelay)|GO:0000160|11828030|TAS go_process cytokinin mediated signaling pathway|GO:0009736|17122069|IMP go_process regulation of cytokinin mediated signaling pathway|GO:0080036|17122069|IGI go_function histidine phosphotransfer kinase activity|GO:0009927|10050311|IDA go_function histidine phosphotransfer kinase activity|GO:0009927|11193423|ISS go_function histidine phosphotransfer kinase activity|GO:0009927|17122069|ISS go_function histidine phosphotransfer kinase activity|GO:0009927|9804162|IDA product histidine-containing phosphotransfer factor 5 note histidine-containing phosphotransfer factor 5 (AHP5); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransmitter 2 (TAIR:AT3G29350.1); Has 311 Blast hits to 310 proteins in 49 species: Archae - 2; Bacteria - 33; Metazoa - 0; Fungi - 8; Plants - 266; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G03430.1p transcript_id AT1G03430.1 protein_id AT1G03430.1p transcript_id AT1G03430.1
AT1G03430	chr1:000848159	0.0	W/848159-848227,848367-848497,848642-848713,848808-848879,848998-849127	AT1G03430.2 AT1G03430.2 CDS histidine-containing phosphotransfer factor 5
At1g03440	chr1:000852681	0.0	W/852681-853874	AT1G03440.1 CDS Leucine-rich repeat (LRR) family protein [TAIR10] CDS gene_syn F21B7.6, F21B7_6 go_component endomembrane system|GO:0012505||IEA go_process signal transduction|GO:0007165|11751054|IC product Leucine-rich repeat (LRR) family protein note Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G03010.1); Has 51202 Blast hits to 18238 proteins in 817 species: Archae - 16; Bacteria - 1653; Metazoa - 5878; Fungi - 321; Plants - 40223; Viruses - 0; Other Eukaryotes - 3111 (source: NCBI BLink). protein_id AT1G03440.1p transcript_id AT1G03440.1 protein_id AT1G03440.1p transcript_id AT1G03440.1
At1g03445	chr1:000854653	0.0	C/854653-854706,854803-854933,855031-855166,855255-855330,855405-855601,855688-855786,855859-855943,856056-856294,856370-856444,856540-856651,856759-856840,857013-857093,857279-857437,857547-857628,857704-857799,857971-858040,858120-858216,858599-858693,858777-858850,859001-859079,859232-859292,859398-859599	AT1G03445.1 CDS Serine/threonine protein phosphatase family protein [TAIR10] CDS gene_syn BRI1 SUPPRESSOR 1, BSU1, F21B7.7 gene BSU1 function encodes a serine threonine protein phosphatase with an N-terminal Kelch-repeat domain, which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid. go_component nucleus|GO:0005634|14977918|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|14977918|IGI go_process regulation of protein localization|GO:0032880|17873094|IDA go_function protein serine/threonine phosphatase activity|GO:0004722|14977918|IDA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS go_function protein binding|GO:0005515|19452453|IPI product Serine/threonine protein phosphatase family protein note BRI1 SUPPRESSOR 1 (BSU1); FUNCTIONS IN: protein binding, protein serine/threonine phosphatase activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of protein localization; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Serine/threonine protein phosphatase, BSU1 (InterPro:IPR012391), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Metallophosphoesterase (InterPro:IPR004843), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: BRI1 suppressor 1 (BSU1)-like 1 (TAIR:AT4G03080.1); Has 12351 Blast hits to 9811 proteins in 679 species: Archae - 82; Bacteria - 604; Metazoa - 4121; Fungi - 2161; Plants - 2580; Viruses - 7; Other Eukaryotes - 2796 (source: NCBI BLink). protein_id AT1G03445.1p transcript_id AT1G03445.1 protein_id AT1G03445.1p transcript_id AT1G03445.1
AT1G03445	chr1:000854770	0.0	C/854770-854933,855031-855166,855255-855330,855405-855601,855688-855786,855859-855943,856056-856294,856370-856444,856540-856651,856759-856840,857013-857093,857279-857437,857547-857628,857704-857799,857971-858040,858120-858216,858599-858693,858777-858850,859001-859079,859232-859292,859398-859599	AT1G03445.2 AT1G03445.2 CDS Serine/threonine protein phosphatase family protein
AT1G03457	chr1:000861109	0.0	C/861109-861278,861368-861511,861606-861909,862042-862212,862314-862393,862488-862593	AT1G03457.3 AT1G03457.3 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g03457	chr1:000861109	0.0	C/861109-861278,861368-861511,861606-861909,862042-862212,862314-862393,862488-862613,862753-862804,863459-863541,863860-864019	AT1G03457.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F21B7.8 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein-defense related 1 (TAIR:AT4G03110.1); Has 28459 Blast hits to 16672 proteins in 823 species: Archae - 14; Bacteria - 1483; Metazoa - 15787; Fungi - 3162; Plants - 5005; Viruses - 0; Other Eukaryotes - 3008 (source: NCBI BLink). protein_id AT1G03457.1p transcript_id AT1G03457.1 protein_id AT1G03457.1p transcript_id AT1G03457.1
At1g03457	chr1:000861109	0.0	C/861109-861278,861368-861511,861606-861909,862042-862212,862314-862393,862488-862640,862753-862804,863459-863541,863860-864019	AT1G03457.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F21B7.8 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein-defense related 1 (TAIR:AT4G03110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03457.2p transcript_id AT1G03457.2 protein_id AT1G03457.2p transcript_id AT1G03457.2
At1g03470	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.1 CDS Kinase interacting (KIP1-like) family protein [TAIR10] CDS gene_syn F21B7.9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Kinase interacting (KIP1-like) family protein note Kinase interacting (KIP1-like) family protein; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT2G47920.1); Has 687 Blast hits to 664 proteins in 124 species: Archae - 6; Bacteria - 10; Metazoa - 109; Fungi - 52; Plants - 347; Viruses - 3; Other Eukaryotes - 160 (source: NCBI BLink). protein_id AT1G03470.1p transcript_id AT1G03470.1 protein_id AT1G03470.1p transcript_id AT1G03470.1
At1g03470	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.2 CDS Kinase interacting (KIP1-like) family protein [TAIR10] CDS gene_syn F21B7.9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Kinase interacting (KIP1-like) family protein note Kinase interacting (KIP1-like) family protein; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT2G47920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03470.2p transcript_id AT1G03470.2 protein_id AT1G03470.2p transcript_id AT1G03470.2
AT1G03470	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.3 AT1G03470.3 CDS Kinase interacting (KIP1-like) family protein
AT1G03470	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.4 AT1G03470.4 CDS Kinase interacting (KIP1-like) family protein
At1g03475	chr1:000869302	0.0	C/869302-869370,869454-869552,869658-869782,869875-869962,870144-870227,870313-870407,870496-870571,870651-871175	AT1G03475.1 CDS Coproporphyrinogen III oxidase [TAIR10] CDS gene_syn ATCPO-I, COPROPORPHYRINOGEN III OXIDASE, CPO, F21B7.10, HEMF1, LESION INITIATION 2, LIN2 gene LIN2 function Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component apoplast|GO:0048046|18538804|IDA go_component plastid|GO:0009536||IDA go_process tetrapyrrole biosynthetic process|GO:0033014||IC go_function coproporphyrinogen oxidase activity|GO:0004109||IGI go_function coproporphyrinogen oxidase activity|GO:0004109||ISS product Coproporphyrinogen III oxidase note LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink). protein_id AT1G03475.1p transcript_id AT1G03475.1 protein_id AT1G03475.1p transcript_id AT1G03475.1
At1g03490	chr1:000871874	0.0	W/871874-872212,872292-872393,872445-872682,872740-872906	AT1G03490.1 CDS NAC domain containing protein 6 [TAIR10] CDS gene_syn ANAC006, F21B7.11, NAC domain containing protein 6, NAC006 gene NAC006 go_process regulation of transcription|GO:0045449||IEA go_process multicellular organismal development|GO:0007275||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC domain containing protein 6 note NAC domain containing protein 6 (NAC006); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: TCV-interacting protein (TAIR:AT5G24590.2); Has 1772 Blast hits to 1529 proteins in 129 species: Archae - 0; Bacteria - 33; Metazoa - 146; Fungi - 22; Plants - 1047; Viruses - 89; Other Eukaryotes - 435 (source: NCBI BLink). protein_id AT1G03490.1p transcript_id AT1G03490.1 protein_id AT1G03490.1p transcript_id AT1G03490.1
At1g03495	chr1:000873436	0.0	W/873436-874476	AT1G03495.1 CDS HXXXD-type acyl-transferase family protein [TAIR10] CDS gene_syn F21B7.12 go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_process biological_process|GO:0008150||ND go_function transferase activity|GO:0016740||ISS product HXXXD-type acyl-transferase family protein note HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G03940.1); Has 1920 Blast hits to 1905 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 18; Plants - 1900; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G03495.1p transcript_id AT1G03495.1 protein_id AT1G03495.1p transcript_id AT1G03495.1
At1g03502	chr1:000875358	0.0	C/875358-875471	AT1G03502.1 [TAIR10] snoRNA gene_syn 50828.SNORNA00002 function small nucleolar RNA go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G03502.1
At1g03506	chr1:000875518	0.0	C/875518-875604	AT1G03506.1 [TAIR10] snoRNA gene_syn 50828.SNORNA00001 go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G03506.1
At1g03510	chr1:000876258	0.0	C/876258-877547	AT1G03510.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F21B7.13 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 33405 Blast hits to 13221 proteins in 227 species: Archae - 0; Bacteria - 37; Metazoa - 55; Fungi - 85; Plants - 32781; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink). protein_id AT1G03510.1p transcript_id AT1G03510.1 protein_id AT1G03510.1p transcript_id AT1G03510.1
At1g03515	chr1:000877648	0.0	W/877648-877719	AT1G03515.1 [TAIR10] tRNA gene_syn 50828.TRNA-ASP-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Asp (anticodon: GTC) transcript_id AT1G03515.1
At1g03520	chr1:000877948	0.0	C/877948-878456,878540-878655,878735-878810,878911-879286	AT1G03520.2 CDS Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [TAIR10] CDS gene_syn F21B7.14 go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS go_process carbohydrate biosynthetic process|GO:0016051||ISS go_function acetylglucosaminyltransferase activity|GO:0008375||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein note Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT4G03340.1); Has 942 Blast hits to 942 proteins in 115 species: Archae - 0; Bacteria - 40; Metazoa - 553; Fungi - 0; Plants - 314; Viruses - 14; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G03520.2p transcript_id AT1G03520.2 protein_id AT1G03520.2p transcript_id AT1G03520.2
At1g03520	chr1:000877948	0.0	C/877948-878456,878540-878655,878735-878810,878911-879553	AT1G03520.1 CDS Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [TAIR10] CDS gene_syn F21B7.14 go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS go_process carbohydrate biosynthetic process|GO:0016051||ISS go_function acetylglucosaminyltransferase activity|GO:0008375||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein note Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT4G03340.1); Has 943 Blast hits to 943 proteins in 116 species: Archae - 0; Bacteria - 40; Metazoa - 553; Fungi - 0; Plants - 315; Viruses - 14; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G03520.1p transcript_id AT1G03520.1 protein_id AT1G03520.1p transcript_id AT1G03520.1
At1g03530	chr1:000880638	0.0	C/880638-881876,881978-882055,882250-883338	AT1G03530.1 CDS nuclear assembly factor 1 [TAIR10] CDS gene_syn ATNAF1, F21B7.15, NAF1, nuclear assembly factor 1 gene NAF1 go_component box H/ACA snoRNP complex|GO:0031429||IEA go_function pseudouridine synthase activity|GO:0009982||IEA go_function snoRNA binding|GO:0030515||IEA go_process biological_process|GO:0008150||ND product nuclear assembly factor 1 note nuclear assembly factor 1 (NAF1); FUNCTIONS IN: snoRNA binding, pseudouridine synthase activity; INVOLVED IN: biological_process unknown; LOCATED IN: box H/ACA snoRNP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro:IPR007504); Has 55446 Blast hits to 31211 proteins in 1683 species: Archae - 434; Bacteria - 10062; Metazoa - 16821; Fungi - 8873; Plants - 3938; Viruses - 821; Other Eukaryotes - 14497 (source: NCBI BLink). protein_id AT1G03530.1p transcript_id AT1G03530.1 protein_id AT1G03530.1p transcript_id AT1G03530.1
At1g03540	chr1:000883782	0.0	W/883782-885611	AT1G03540.1 CDS Pentatricopeptide repeat (PPR-like) superfamily protein [TAIR10] CDS gene_syn F21B7.16 go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR-like) superfamily protein note Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 43035 Blast hits to 14042 proteins in 228 species: Archae - 0; Bacteria - 19; Metazoa - 59; Fungi - 97; Plants - 42229; Viruses - 0; Other Eukaryotes - 631 (source: NCBI BLink). protein_id AT1G03540.1p transcript_id AT1G03540.1 protein_id AT1G03540.1p transcript_id AT1G03540.1
AT1G03540	chr1:000883782	0.0	W/883782-885611	AT1G03540.2 AT1G03540.2 CDS Pentatricopeptide repeat (PPR-like) superfamily protein
AT1G03540	chr1:000883782	0.0	W/883782-885611	AT1G03540.3 AT1G03540.3 CDS Pentatricopeptide repeat (PPR-like) superfamily protein
AT1G03550	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887412	AT1G03550.13 AT1G03550.13 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887412	AT1G03550.14 AT1G03550.14 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887412	AT1G03550.6 AT1G03550.6 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.15 AT1G03550.15 CDS Secretory carrier membrane protein (SCAMP) family protein
At1g03550	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.1 CDS Secretory carrier membrane protein (SCAMP) family protein [TAIR10] CDS gene_syn F21B7.17, F21B7_17 go_component integral to membrane|GO:0016021||IEA go_process protein transport|GO:0015031||IEA go_function transmembrane transporter activity|GO:0022857||ISS product Secretory carrier membrane protein (SCAMP) family protein note Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 670 Blast hits to 668 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 14; Plants - 226; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). protein_id AT1G03550.1p transcript_id AT1G03550.1 protein_id AT1G03550.1p transcript_id AT1G03550.1
AT1G03550	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887303	AT1G03550.10 AT1G03550.10 CDS Secretory carrier membrane protein (SCAMP) family protein
At1g03545	chr1:000885941	0.0	W/885941-886608,886703-887158,887808-887906	AT1G03545.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G03550 product other RNA transcript_id AT1G03545.1
AT1G03550	chr1:000885993	0.0	C/885993-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.11 AT1G03550.11 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000886148	0.0	C/886148-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.12 AT1G03550.12 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000886148	0.0	C/886148-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.9 AT1G03550.9 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000886389	0.0	C/886389-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.2 AT1G03550.2 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000886389	0.0	C/886389-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.3 AT1G03550.3 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000886389	0.0	C/886389-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.7 AT1G03550.7 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000886527	0.0	C/886527-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.4 AT1G03550.4 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000886527	0.0	C/886527-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.5 AT1G03550.5 CDS Secretory carrier membrane protein (SCAMP) family protein
AT1G03550	chr1:000886527	0.0	C/886527-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.8 AT1G03550.8 CDS Secretory carrier membrane protein (SCAMP) family protein
At1g03560	chr1:000890428	0.0	C/890428-892410	AT1G03560.1 CDS Pentatricopeptide repeat (PPR-like) superfamily protein [TAIR10] CDS gene_syn F21B7.18 go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR-like) superfamily protein note Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 53521 Blast hits to 15193 proteins in 316 species: Archae - 3; Bacteria - 91; Metazoa - 613; Fungi - 824; Plants - 50230; Viruses - 0; Other Eukaryotes - 1760 (source: NCBI BLink). protein_id AT1G03560.1p transcript_id AT1G03560.1 protein_id AT1G03560.1p transcript_id AT1G03560.1
At1g03570	chr1:000892514	0.0	W/892514-892585	AT1G03570.1 [TAIR10] tRNA gene_syn 50828.TRNA-GLN-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Gln (anticodon: CTG) transcript_id AT1G03570.1
At1g03580	chr1:000892847	0.0	W/892847-894052	AT1G03580.1 [TAIR10] pseudogene
At1g03590	chr1:000894480	0.0	C/894480-894944,895030-895253,895355-895472,895583-895921,896015-896257	AT1G03590.1 CDS Protein phosphatase 2C family protein [TAIR10] CDS gene_syn F21B7.20 go_component plasma membrane|GO:0005886|17317660|IDA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function catalytic activity|GO:0003824||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Protein phosphatase 2C family protein note Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G03415.2); Has 5799 Blast hits to 5797 proteins in 294 species: Archae - 0; Bacteria - 4; Metazoa - 1418; Fungi - 691; Plants - 2505; Viruses - 5; Other Eukaryotes - 1176 (source: NCBI BLink). protein_id AT1G03590.1p transcript_id AT1G03590.1 protein_id AT1G03590.1p transcript_id AT1G03590.1
At1g03600	chr1:000898916	0.0	W/898916-899440	AT1G03600.1 CDS photosystem II family protein [TAIR10] CDS gene_syn F21B7.21, PSB27 gene PSB27 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component thylakoid|GO:0009579|14729914|IDA go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA go_component chloroplast photosystem II|GO:0030095||ISS go_process photosystem II repair|GO:0010206|20444695|IMP go_function molecular_function|GO:0003674||ND product photosystem II family protein note PSB27; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II repair; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast photosystem II, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 273 Blast hits to 273 proteins in 82 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). protein_id AT1G03600.1p transcript_id AT1G03600.1 protein_id AT1G03600.1p transcript_id AT1G03600.1
At1g03610	chr1:000901304	0.0	W/901304-901396,901486-901706,901891-902077,902170-902347,902425-902672	AT1G03610.1 CDS plant/protein (DUF789) [TAIR10] CDS gene_syn F21B7.22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF789) note Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1); Has 266 Blast hits to 262 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G03610.1p transcript_id AT1G03610.1 protein_id AT1G03610.1p transcript_id AT1G03610.1
AT1G03610	chr1:000901304	0.0	W/901304-901396,901486-901706,901891-902077,902170-902406	AT1G03610.2 AT1G03610.2 CDS plant/protein (DUF789)
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905759	AT1G03620.2 AT1G03620.2 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905759	AT1G03620.3 AT1G03620.3 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905759	AT1G03620.6 AT1G03620.6 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905911-906023,906314-906367	AT1G03620.12 AT1G03620.12 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.10 AT1G03620.10 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.11 AT1G03620.11 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.13 AT1G03620.13 CDS ELMO/CED-12 family protein
At1g03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.1 CDS ELMO/CED-12 family protein [TAIR10] CDS gene_syn F21B7.23 go_component cytoskeleton|GO:0005856||IEA go_process phagocytosis|GO:0006909||IEA go_function molecular_function|GO:0003674||ND product ELMO/CED-12 family protein note ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1); Has 828 Blast hits to 828 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 41; Plants - 178; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink). protein_id AT1G03620.1p transcript_id AT1G03620.1 protein_id AT1G03620.1p transcript_id AT1G03620.1
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.4 AT1G03620.4 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.5 AT1G03620.5 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.7 AT1G03620.7 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.8 AT1G03620.8 CDS ELMO/CED-12 family protein
AT1G03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.9 AT1G03620.9 CDS ELMO/CED-12 family protein
At1g03630	chr1:000907699	0.0	W/907699-907755,907849-907947,908033-908570,908655-909010,909090-909245	AT1G03630.1 CDS protochlorophyllide oxidoreductase C [TAIR10] CDS gene_syn F21B7.24, NADPH:PROTOCHLOROPHYLLIDE OXIDOREDUCTASE, POR C, PORC, protochlorophyllide oxidoreductase C gene POR C function Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component chloroplast|GO:0009507|8624514|NAS go_process chlorophyll biosynthetic process|GO:0015995|10838072|TAS go_function NADPH dehydrogenase activity|GO:0003959|11785941|IDA go_function oxidoreductase activity|GO:0016491||ISS go_function protochlorophyllide reductase activity|GO:0016630|11785941|IDA product protochlorophyllide oxidoreductase C note protochlorophyllide oxidoreductase C (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Light-dependent protochlorophyllide reductase (InterPro:IPR005979), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 21168 Blast hits to 21148 proteins in 2215 species: Archae - 200; Bacteria - 11840; Metazoa - 1905; Fungi - 1885; Plants - 1089; Viruses - 0; Other Eukaryotes - 4249 (source: NCBI BLink). protein_id AT1G03630.1p transcript_id AT1G03630.1 protein_id AT1G03630.1p transcript_id AT1G03630.1
At1g03630	chr1:000907699	0.0	W/907699-907755,907849-907947,908039-908570,908655-909010,909090-909245	AT1G03630.2 CDS protochlorophyllide oxidoreductase C [TAIR10] CDS gene_syn F21B7.24, NADPH:PROTOCHLOROPHYLLIDE OXIDOREDUCTASE, POR C, PORC, protochlorophyllide oxidoreductase C gene POR C function Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast|GO:0009507|8624514|NAS go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_process chlorophyll biosynthetic process|GO:0015995|10838072|TAS go_function NADPH dehydrogenase activity|GO:0003959|11785941|IDA go_function oxidoreductase activity|GO:0016491||ISS go_function protochlorophyllide reductase activity|GO:0016630|11785941|IDA product protochlorophyllide oxidoreductase C note protochlorophyllide oxidoreductase C (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03630.2p transcript_id AT1G03630.2 protein_id AT1G03630.2p transcript_id AT1G03630.2
At1g03640	chr1:000909811	0.0	C/909811-909883	AT1G03640.1 [TAIR10] tRNA gene_syn 50828.TRNA-PHE-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Phe (anticodon: GAA) transcript_id AT1G03640.1
At1g03650	chr1:000910249	0.0	C/910249-910481,910860-911103	AT1G03650.1 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein [TAIR10] CDS gene_syn F21B7.25 go_process metabolic process|GO:0008152||IEA go_function N-acetyltransferase activity|GO:0008080||IEA go_component cellular_component|GO:0005575||ND go_process metabolic process|GO:0008152||ISS go_function N-acetyltransferase activity|GO:0008080||ISS product Acyl-CoA N-acyltransferases (NAT) superfamily protein note Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 3295 Blast hits to 3295 proteins in 1287 species: Archae - 200; Bacteria - 2223; Metazoa - 217; Fungi - 220; Plants - 88; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink). protein_id AT1G03650.1p transcript_id AT1G03650.1 protein_id AT1G03650.1p transcript_id AT1G03650.1
At1g03660	chr1:000911436	0.0	C/911436-911759	AT1G03660.1 CDS Ankyrin-repeat containing protein [TAIR10] CDS gene_syn F21B7.26, F21B7_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Ankyrin-repeat containing protein note Ankyrin-repeat containing protein; BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G03670.1); Has 105 Blast hits to 104 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03660.1p transcript_id AT1G03660.1 protein_id AT1G03660.1p transcript_id AT1G03660.1
AT1G03660	chr1:000911436	0.0	C/911436-911759	AT1G03660.2 AT1G03660.2 CDS Ankyrin-repeat containing protein
At1g03670	chr1:000914222	0.0	C/914222-914839,914909-915456,915538-916222	AT1G03670.1 CDS ankyrin repeat family protein [TAIR10] CDS gene_syn F21B7.27 product ankyrin repeat family protein note ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03500.1); Has 38664 Blast hits to 17395 proteins in 690 species: Archae - 39; Bacteria - 2692; Metazoa - 19825; Fungi - 3120; Plants - 3302; Viruses - 203; Other Eukaryotes - 9483 (source: NCBI BLink). protein_id AT1G03670.1p transcript_id AT1G03670.1 protein_id AT1G03670.1p transcript_id AT1G03670.1
At1g03680	chr1:000916990	0.0	C/916990-917303,917640-917865	AT1G03680.1 CDS thioredoxin M-type 1 [TAIR10] CDS gene_syn ABC transporter of the mitochondrion 1, ARABIDOPSIS THIOREDOXIN M-TYPE 1, ATHM1, ATM1, THIOREDOXIN M-TYPE 1, THM1, TRX-M1, thioredoxin M-type 1 gene THM1 function encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast stroma|GO:0009570|19259774|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component apoplast|GO:0048046|18538804|IDA go_component stromule|GO:0010319|16923014|IDA go_process response to oxidative stress|GO:0006979|11169189|IGI go_process response to cold|GO:0009409|16923014|IEP go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA go_function enzyme activator activity|GO:0008047|11169189|IDA product thioredoxin M-type 1 note thioredoxin M-type 1 (THM1); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, response to cold, positive regulation of catalytic activity; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G03520.1); Has 21675 Blast hits to 20380 proteins in 3008 species: Archae - 297; Bacteria - 11532; Metazoa - 2886; Fungi - 1120; Plants - 1860; Viruses - 8; Other Eukaryotes - 3972 (source: NCBI BLink). protein_id AT1G03680.1p transcript_id AT1G03680.1 protein_id AT1G03680.1p transcript_id AT1G03680.1
At1g03687	chr1:000918308	0.0	W/918308-918601,918868-919008,919096-919188,919267-919393,919503-919609,919737-919817,919913-919995,920087-920306	AT1G03687.1 CDS DTW domain-containing protein [TAIR10] CDS gene_syn F21B7.29, F21B7_29 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product DTW domain-containing protein note DTW domain-containing protein; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 580 Blast hits to 580 proteins in 298 species: Archae - 0; Bacteria - 527; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G03687.1p transcript_id AT1G03687.1 protein_id AT1G03687.1p transcript_id AT1G03687.1
At1g03687	chr1:000918308	0.0	W/918308-918601,918868-919008,919096-919188,919267-919393,919503-919609,919737-919817,919913-919999	AT1G03687.2 CDS DTW domain-containing protein [TAIR10] CDS gene_syn F21B7.29, F21B7_29 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product DTW domain-containing protein note DTW domain-containing protein; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 477 Blast hits to 477 proteins in 253 species: Archae - 0; Bacteria - 432; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G03687.2p transcript_id AT1G03687.2 protein_id AT1G03687.2p transcript_id AT1G03687.2
At1g03700	chr1:000921038	0.0	W/921038-921195,921299-921401,921611-921844	AT1G03700.1 CDS Uncharacterised protein family (UPF0497) [TAIR10] CDS gene_syn F21B7.30 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Uncharacterised protein family (UPF0497) note Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G03540.1); Has 592 Blast hits to 592 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 592; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03700.1p transcript_id AT1G03700.1 protein_id AT1G03700.1p transcript_id AT1G03700.1
At1g03710	chr1:000923492	0.0	W/923492-923755,923828-923977,924093-924287	AT1G03710.1 CDS Cystatin/monellin superfamily protein [TAIR10] CDS gene_syn F21B7.31 go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Cystatin/monellin superfamily protein note Cystatin/monellin superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin (InterPro:IPR000010), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381), Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT4G03565.1); Has 113 Blast hits to 103 proteins in 7 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G03710.1p transcript_id AT1G03710.1 protein_id AT1G03710.1p transcript_id AT1G03710.1
At1g03710	chr1:000923492	0.0	W/923492-923755,923828-923977,924093-924287	AT1G03710.2 CDS Cystatin/monellin superfamily protein [TAIR10] CDS gene_syn F21B7.31 go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Cystatin/monellin superfamily protein note Cystatin/monellin superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin (InterPro:IPR000010), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381), Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT4G03565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G03710.2p transcript_id AT1G03710.2 protein_id AT1G03710.2p transcript_id AT1G03710.2
At1g03720	chr1:000924996	0.0	C/924996-925208,925279-925446,925551-925780,926160-926373	AT1G03720.1 CDS Cysteine proteinases superfamily protein [TAIR10] CDS gene_syn F21B7.32 go_process proteolysis|GO:0006508||IEA go_function cysteine-type peptidase activity|GO:0008234||IEA go_component cellular_component|GO:0005575||ND product Cysteine proteinases superfamily protein note Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: ovule, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G17080.1); Has 2156 Blast hits to 2154 proteins in 385 species: Archae - 2; Bacteria - 56; Metazoa - 1002; Fungi - 0; Plants - 537; Viruses - 67; Other Eukaryotes - 492 (source: NCBI BLink). protein_id AT1G03720.1p transcript_id AT1G03720.1 protein_id AT1G03720.1p transcript_id AT1G03720.1
AT1G03720	chr1:000924996	0.0	C/924996-925208,925303-925446,925551-925780,926160-926373	AT1G03720.2 AT1G03720.2 CDS Cysteine proteinases superfamily protein
At1g03730	chr1:000931017	0.0	C/931017-931520	AT1G03730.1 CDS pyrroline-5-carboxylate reductase, putative [TAIR10] CDS gene_syn F21B7.33 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03600.1); Has 50 Blast hits to 50 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03730.1p transcript_id AT1G03730.1 protein_id AT1G03730.1p transcript_id AT1G03730.1
At1g03740	chr1:000934055	0.0	W/934055-934708,934785-935069,935164-935481,935570-935797,935882-936097,936189-936572,936655-936792	AT1G03740.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F21B7.34 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G44290.4); Has 123601 Blast hits to 122225 proteins in 4475 species: Archae - 82; Bacteria - 13399; Metazoa - 46732; Fungi - 12742; Plants - 30380; Viruses - 449; Other Eukaryotes - 19817 (source: NCBI BLink). protein_id AT1G03740.1p transcript_id AT1G03740.1 protein_id AT1G03740.1p transcript_id AT1G03740.1
At1g03740	chr1:000934055	0.0	W/934055-934708,934785-935069,935164-935481,935570-935797,935882-936097,936189-936581	AT1G03740.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F21B7.34 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G44290.4); Has 125124 Blast hits to 123732 proteins in 4582 species: Archae - 82; Bacteria - 13793; Metazoa - 47503; Fungi - 12299; Plants - 31008; Viruses - 451; Other Eukaryotes - 19988 (source: NCBI BLink). protein_id AT1G03740.2p transcript_id AT1G03740.2 protein_id AT1G03740.2p transcript_id AT1G03740.2
At1g03743	chr1:000937207	0.0	C/937207-937287	AT1G03743.1 [TAIR10] snoRNA gene_syn 50828.SNORNA00003 go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G03743.1
At1g03746	chr1:000937401	0.0	C/937401-937485	AT1G03746.1 [TAIR10] snoRNA gene_syn 50728.SNORNA00001 go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G03746.1
At1g03750	chr1:000937920	0.0	W/937920-938309,938424-938530,938634-939800,939876-940002,940092-940367,940453-940678,940773-941068	AT1G03750.1 CDS switch 2 [TAIR10] CDS gene_syn CHR9, CHROMATIN REMODELING 9, F21M11.34, F21M11_34, SNF2, SUCROSE NON-FERMENTING 2, SWI2, switch 2 gene SWI2 go_component membrane|GO:0016020|17432890|IDA go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function helicase activity|GO:0004386||ISS product switch 2 note switch 2 (SWI2); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 20033 Blast hits to 14398 proteins in 1655 species: Archae - 120; Bacteria - 5954; Metazoa - 4199; Fungi - 4321; Plants - 1927; Viruses - 177; Other Eukaryotes - 3335 (source: NCBI BLink). protein_id AT1G03750.1p transcript_id AT1G03750.1 protein_id AT1G03750.1p transcript_id AT1G03750.1
At1g03760	chr1:000941211	0.0	C/941211-941267,941366-941431,941537-941572,941694-941794,941915-941948,942031-942105,942187-942567,942653-942820,942980-943039,943123-943320	AT1G03760.1 CDS Prefoldin chaperone subunit family protein [TAIR10] CDS gene_syn F21M11.33, F21M11_33 go_component prefoldin complex|GO:0016272||IEA go_process protein folding|GO:0006457||IEA go_function unfolded protein binding|GO:0051082||IEA go_component prefoldin complex|GO:0016272||ISS go_process protein folding|GO:0006457||ISS product Prefoldin chaperone subunit family protein note Prefoldin chaperone subunit family protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053); Has 429 Blast hits to 422 proteins in 142 species: Archae - 27; Bacteria - 8; Metazoa - 215; Fungi - 17; Plants - 37; Viruses - 4; Other Eukaryotes - 121 (source: NCBI BLink). protein_id AT1G03760.1p transcript_id AT1G03760.1 protein_id AT1G03760.1p transcript_id AT1G03760.1
At1g03770	chr1:000944772	0.0	W/944772-944982,945111-945168,945472-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.3 CDS RING 1B [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA RING 1B, ATRING1B, F21M11.32, F21M11_32, RING 1B, RING1B gene RING1B function Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634|19097900|IDA go_component PRC1 complex|GO:0035102|19097900|IPI go_process negative regulation of gene expression, epigenetic|GO:0045814|19097900|IGI go_function zinc ion binding|GO:0008270||ISS product RING 1B note RING 1B (RING1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1). protein_id AT1G03770.3p transcript_id AT1G03770.3 protein_id AT1G03770.3p transcript_id AT1G03770.3
At1g03770	chr1:000944772	0.0	W/944772-944982,945111-945168,945472-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947019,947123-947293,947399-947431	AT1G03770.2 CDS RING 1B [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA RING 1B, ATRING1B, F21M11.32, F21M11_32, RING 1B, RING1B gene RING1B function Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634|19097900|IDA go_component PRC1 complex|GO:0035102|19097900|IPI go_process negative regulation of gene expression, epigenetic|GO:0045814|19097900|IGI go_function zinc ion binding|GO:0008270||ISS product RING 1B note RING 1B (RING1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1). protein_id AT1G03770.2p transcript_id AT1G03770.2 protein_id AT1G03770.2p transcript_id AT1G03770.2
At1g03770	chr1:000944772	0.0	W/944772-944982,945117-945168,945472-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.1 CDS RING 1B [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA RING 1B, ATRING1B, F21M11.32, F21M11_32, RING 1B, RING1B gene RING1B function Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634|19097900|IDA go_component PRC1 complex|GO:0035102|19097900|IPI go_process negative regulation of gene expression, epigenetic|GO:0045814|19097900|IGI go_function zinc ion binding|GO:0008270||ISS product RING 1B note RING 1B (RING1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1); Has 7001 Blast hits to 4383 proteins in 552 species: Archae - 10; Bacteria - 208; Metazoa - 3701; Fungi - 387; Plants - 512; Viruses - 317; Other Eukaryotes - 1866 (source: NCBI BLink). protein_id AT1G03770.1p transcript_id AT1G03770.1 protein_id AT1G03770.1p transcript_id AT1G03770.1
AT1G03770	chr1:000945476	0.0	W/945476-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.4 AT1G03770.4 CDS RING 1B
AT1G03770	chr1:000945476	0.0	W/945476-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.6 AT1G03770.6 CDS RING 1B
AT1G03770	chr1:000945806	0.0	W/945806-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.5 AT1G03770.5 CDS RING 1B
At1g03780	chr1:000947555	0.0	C/947555-947664,947799-948009,948088-948147,948235-948343,948429-948595,948697-948816,948912-948992,949076-949207,949297-949452,949541-949621,949734-949796,949883-950125,950198-950311,950404-950500,950582-950794,950881-951041,951126-951211,951528-951696	AT1G03780.3 CDS targeting protein for XKLP2 [TAIR10] CDS gene_syn F21M11.31, F21M11_31, TPX2, targeting protein for XKLP2 gene TPX2 function Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. go_component nucleus|GO:0005634|18941054|IDA go_process spindle assembly|GO:0051225|18941054|IMP go_function microtubule binding|GO:0008017|18941054|IDA product targeting protein for XKLP2 note targeting protein for XKLP2 (TPX2); FUNCTIONS IN: microtubule binding; INVOLVED IN: spindle assembly; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021), Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G44270.1). protein_id AT1G03780.3p transcript_id AT1G03780.3 protein_id AT1G03780.3p transcript_id AT1G03780.3
At1g03780	chr1:000947785	0.0	C/947785-948009,948088-948147,948235-948343,948429-948595,948697-948816,948912-948992,949076-949207,949297-949452,949541-949621,949734-949796,949883-950125,950198-950311,950404-950500,950582-950794,950881-951041,951126-951211,951528-951696	AT1G03780.2 CDS targeting protein for XKLP2 [TAIR10] CDS gene_syn F21M11.31, F21M11_31, TPX2, targeting protein for XKLP2 gene TPX2 function Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. go_component nucleus|GO:0005634|18941054|IDA go_process spindle assembly|GO:0051225|18941054|IMP go_function microtubule binding|GO:0008017|18941054|IDA product targeting protein for XKLP2 note targeting protein for XKLP2 (TPX2); CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021), Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G44270.1); Has 2017 Blast hits to 1530 proteins in 221 species: Archae - 5; Bacteria - 108; Metazoa - 882; Fungi - 144; Plants - 344; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). protein_id AT1G03780.2p transcript_id AT1G03780.2 protein_id AT1G03780.2p transcript_id AT1G03780.2
At1g03780	chr1:000948064	0.0	C/948064-948343,948429-948640,948697-948816,949076-949207,949297-949452,949541-949621,949883-950125,950198-950311,950404-950500,950582-950794,950881-951041,951126-951211,951528-951696	AT1G03780.1 CDS targeting protein for XKLP2 [TAIR10] CDS gene_syn F21M11.31, F21M11_31, TPX2, targeting protein for XKLP2 gene TPX2 function Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. go_component chloroplast envelope|GO:0009941|12938931|IDA go_component nucleus|GO:0005634|18941054|IDA go_process spindle assembly|GO:0051225|18941054|IMP go_function microtubule binding|GO:0008017|18941054|IDA product targeting protein for XKLP2 note targeting protein for XKLP2 (TPX2); FUNCTIONS IN: microtubule binding; INVOLVED IN: spindle assembly; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021); BEST Arabidopsis thaliana protein match is: Cell cycle regulated microtubule associated protein (TAIR:AT4G22860.2); Has 864 Blast hits to 721 proteins in 133 species: Archae - 2; Bacteria - 40; Metazoa - 457; Fungi - 40; Plants - 113; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink). protein_id AT1G03780.1p transcript_id AT1G03780.1 protein_id AT1G03780.1p transcript_id AT1G03780.1
At1g03790	chr1:000954589	0.0	W/954589-955770	AT1G03790.1 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein [TAIR10] CDS gene_syn F21M11.30, F21M11_30, SOM, SOMNUS gene SOM function Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180). go_component nucleus|GO:0005634|18487351|IDA go_process negative regulation of seed germination|GO:0010187|18487351|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Zinc finger C-x8-C-x5-C-x3-H type family protein note SOMNUS (SOM); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G44260.1); Has 3270 Blast hits to 1059 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 30; Plants - 421; Viruses - 3; Other Eukaryotes - 2372 (source: NCBI BLink). protein_id AT1G03790.1p transcript_id AT1G03790.1 protein_id AT1G03790.1p transcript_id AT1G03790.1
At1g03800	chr1:000957261	0.0	C/957261-957998	AT1G03800.1 CDS ERF domain protein 10 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ATERF10, ERF domain protein 10, ERF10, F21M11.29, F21M11_29 gene ERF10 function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-10). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS go_function DNA binding|GO:0003677|11487705|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11487705|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9687012|TAS go_function transcription repressor activity|GO:0016564|11487705|TAS product ERF domain protein 10 note ERF domain protein 10 (ERF10); FUNCTIONS IN: transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: erf domain protein 9 (TAIR:AT5G44210.1); Has 6303 Blast hits to 5828 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6292; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G03800.1p transcript_id AT1G03800.1 protein_id AT1G03800.1p transcript_id AT1G03800.1
At1g03810	chr1:000958759	0.0	W/958759-959008,959428-959609	AT1G03810.1 CDS Nucleic acid-binding, OB-fold-like protein [TAIR10] CDS gene_syn F21M11.28, F21M11_28 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Nucleic acid-binding, OB-fold-like protein note Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT4G28440.1); Has 209 Blast hits to 209 proteins in 44 species: Archae - 18; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G03810.1p transcript_id AT1G03810.1 protein_id AT1G03810.1p transcript_id AT1G03810.1
At1g03820	chr1:000960008	0.0	C/960008-960676	AT1G03820.1 CDS E6-like protein [TAIR10] CDS gene_syn F21M11.27, F21M11_27 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1345 Blast hits to 1122 proteins in 102 species: Archae - 2; Bacteria - 28; Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0; Other Eukaryotes - 1148 (source: NCBI BLink). protein_id AT1G03820.1p transcript_id AT1G03820.1 protein_id AT1G03820.1p transcript_id AT1G03820.1
At1g03830	chr1:000962128	0.0	C/962128-963321,963469-963546,963639-964191,964295-964380,964504-964626,964739-964873,964952-965041,965124-965309,965453-965506,965599-965736,965823-965888,965996-966157,966446-966622	AT1G03830.2 CDS guanylate-binding family protein [TAIR10] CDS gene_syn F21M11.26, F21M11_26 go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_component cellular_component|GO:0005575||ND go_process immune response|GO:0006955||ISS go_function GTPase activity|GO:0003924||ISS go_function GTP binding|GO:0005525||ISS product guanylate-binding family protein note guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1). protein_id AT1G03830.2p transcript_id AT1G03830.2 protein_id AT1G03830.2p transcript_id AT1G03830.2
At1g03830	chr1:000962128	0.0	C/962128-963321,963469-963546,963639-964191,964295-964380,964504-964626,964739-964873,964952-965041,965124-965309,965453-965506,965599-965736,965996-966157,966446-966622	AT1G03830.1 CDS guanylate-binding family protein [TAIR10] CDS gene_syn F21M11.26, F21M11_26 go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_component cellular_component|GO:0005575||ND go_process immune response|GO:0006955||ISS go_function GTPase activity|GO:0003924||ISS go_function GTP binding|GO:0005525||ISS product guanylate-binding family protein note guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1); Has 104208 Blast hits to 58378 proteins in 3029 species: Archae - 1549; Bacteria - 18958; Metazoa - 46662; Fungi - 8741; Plants - 6295; Viruses - 432; Other Eukaryotes - 21571 (source: NCBI BLink). protein_id AT1G03830.1p transcript_id AT1G03830.1 protein_id AT1G03830.1p transcript_id AT1G03830.1
At1g03840	chr1:000967596	0.0	C/967596-968568,969315-969705,969908-970058	AT1G03840.2 CDS C2H2 and C2HC zinc fingers superfamily protein [TAIR10] CDS gene_syn F21M11.25, F21M11_25, MGP, Magpie gene MGP function MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations. go_component nucleus|GO:0005634|17785527|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function protein binding|GO:0005515|17785527|IPI go_function zinc ion binding|GO:0008270||ISS product C2H2 and C2HC zinc fingers superfamily protein note Magpie (MGP); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G44160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03840.2p transcript_id AT1G03840.2 protein_id AT1G03840.2p transcript_id AT1G03840.2
At1g03840	chr1:000967596	0.0	C/967596-968568,969315-969711,969908-970058	AT1G03840.1 CDS C2H2 and C2HC zinc fingers superfamily protein [TAIR10] CDS gene_syn F21M11.25, F21M11_25, MGP, Magpie gene MGP function MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations. go_component nucleus|GO:0005634|17785527|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function protein binding|GO:0005515|17785527|IPI go_function zinc ion binding|GO:0008270||ISS product C2H2 and C2HC zinc fingers superfamily protein note Magpie (MGP); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G44160.1); Has 50307 Blast hits to 19551 proteins in 373 species: Archae - 0; Bacteria - 2; Metazoa - 47709; Fungi - 273; Plants - 826; Viruses - 4; Other Eukaryotes - 1493 (source: NCBI BLink). protein_id AT1G03840.1p transcript_id AT1G03840.1 protein_id AT1G03840.1p transcript_id AT1G03840.1
AT1G03850	chr1:000976349	0.0	C/976349-976501,977368-977685	AT1G03850.3 AT1G03850.3 CDS Glutaredoxin family protein
At1g03850	chr1:000976428	0.0	C/976428-976501,977280-977685	AT1G03850.1 CDS Glutaredoxin family protein [TAIR10] CDS gene_syn F21M11.22, F21M11_22 go_function electron carrier activity|GO:0009055||IEA go_function protein disulfide oxidoreductase activity|GO:0015035||IEA go_process response to cytokinin stimulus|GO:0009735|16212609|IEP product Glutaredoxin family protein note Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: response to cytokinin stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G28480.1); Has 446 Blast hits to 446 proteins in 30 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 5; Plants - 435; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G03850.1p transcript_id AT1G03850.1 protein_id AT1G03850.1p transcript_id AT1G03850.1
At1g03850	chr1:000977233	0.0	C/977233-977685	AT1G03850.2 CDS Glutaredoxin family protein [TAIR10] CDS gene_syn F21M11.22, F21M11_22 go_function electron carrier activity|GO:0009055||IEA go_function protein disulfide oxidoreductase activity|GO:0015035||IEA go_process response to cytokinin stimulus|GO:0009735|16212609|IEP product Glutaredoxin family protein note Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: response to cytokinin stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G28480.1); Has 646 Blast hits to 646 proteins in 57 species: Archae - 0; Bacteria - 6; Metazoa - 30; Fungi - 15; Plants - 593; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G03850.2p transcript_id AT1G03850.2 protein_id AT1G03850.2p transcript_id AT1G03850.2
At1g03860	chr1:000979611	0.0	C/979611-979799,979891-980103,980185-980355,980778-980870	AT1G03860.2 CDS prohibitin 2 [TAIR10] CDS gene_syn ATPHB2, F21M11.21, F21M11_21, PHB2, prohibitin 2 gene PHB2 function prohibitin 2 go_component cell wall|GO:0005618|16287169|IDA go_component mitochondrion|GO:0005739|18385124|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrion|GO:0005739|16618929|IDA go_component mitochondrion|GO:0005739|17883375|IDA go_component mitochondrial respiratory chain complex I|GO:0005747|20197505|IDA go_component plastid|GO:0009536|16618929|IDA go_component respiratory chain complex I|GO:0045271|18189341|IDA go_process biological_process|GO:0008150||ND product prohibitin 2 note prohibitin 2 (PHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 7 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 1 (TAIR:AT4G28510.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03860.2p transcript_id AT1G03860.2 protein_id AT1G03860.2p transcript_id AT1G03860.2
At1g03860	chr1:000979611	0.0	C/979611-979799,979891-980103,980185-980355,980778-980894,980987-981157	AT1G03860.1 CDS prohibitin 2 [TAIR10] CDS gene_syn ATPHB2, F21M11.21, F21M11_21, PHB2, prohibitin 2 gene PHB2 function prohibitin 2 go_component cell wall|GO:0005618|16287169|IDA go_component mitochondrion|GO:0005739|15276431|IDA go_component mitochondrion|GO:0005739|18385124|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrion|GO:0005739|16618929|IDA go_component mitochondrion|GO:0005739|17883375|IDA go_component mitochondrial respiratory chain complex I|GO:0005747|20197505|IDA go_component plastid|GO:0009536|16618929|IDA go_component respiratory chain complex I|GO:0045271|18189341|IDA go_process biological_process|GO:0008150||ND product prohibitin 2 note prohibitin 2 (PHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 8 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 7 (TAIR:AT5G44140.1); Has 3974 Blast hits to 3972 proteins in 1182 species: Archae - 185; Bacteria - 2042; Metazoa - 484; Fungi - 300; Plants - 234; Viruses - 15; Other Eukaryotes - 714 (source: NCBI BLink). protein_id AT1G03860.1p transcript_id AT1G03860.1 protein_id AT1G03860.1p transcript_id AT1G03860.1
At1g03860	chr1:000979611	0.0	C/979611-979799,979891-980103,980185-980355,980778-980894,980987-981157	AT1G03860.3 CDS prohibitin 2 [TAIR10] CDS gene_syn ATPHB2, F21M11.21, F21M11_21, PHB2, prohibitin 2 gene PHB2 function prohibitin 2 go_component cell wall|GO:0005618|16287169|IDA go_component mitochondrion|GO:0005739|18385124|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrion|GO:0005739|16618929|IDA go_component mitochondrion|GO:0005739|17883375|IDA go_component mitochondrial respiratory chain complex I|GO:0005747|20197505|IDA go_component plastid|GO:0009536|16618929|IDA go_component respiratory chain complex I|GO:0045271|18189341|IDA go_process biological_process|GO:0008150||ND product prohibitin 2 note prohibitin 2 (PHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 7 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 7 (TAIR:AT5G44140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03860.3p transcript_id AT1G03860.3 protein_id AT1G03860.3p transcript_id AT1G03860.3
At1g03870	chr1:000982625	0.0	C/982625-983368	AT1G03870.1 CDS FASCICLIN-like arabinoogalactan 9 [TAIR10] CDS gene_syn F21M11.20, F21M11_20, FASCICLIN-like arabinoogalactan 9, FLA9 gene FLA9 function fasciclin-like arabinogalactan-protein 9 (Fla9) go_component plasma membrane|GO:0005886|17644812|IDA go_component anchored to plasma membrane|GO:0046658|14517339|IDA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS product FASCICLIN-like arabinoogalactan 9 note FASCICLIN-like arabinoogalactan 9 (FLA9); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 13 precursor (TAIR:AT5G44130.1); Has 1005 Blast hits to 985 proteins in 182 species: Archae - 18; Bacteria - 304; Metazoa - 15; Fungi - 9; Plants - 624; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G03870.1p transcript_id AT1G03870.1 protein_id AT1G03870.1p transcript_id AT1G03870.1
At1g03880	chr1:000985786	0.0	W/985786-986068,986279-986541,986854-987282,987524-987916	AT1G03880.1 CDS cruciferin 2 [TAIR10] CDS gene_syn CRB, CRU2, CRUCIFERIN B, F21M11.19, F21M11_19, cruciferin 2 gene CRU2 function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. go_component endomembrane system|GO:0012505||IEA go_function nutrient reservoir activity|GO:0045735||IEA go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP go_process seed germination|GO:0009845||TAS go_function nutrient reservoir activity|GO:0045735||ISS product cruciferin 2 note cruciferin 2 (CRU2); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: seed germination, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: leaf, seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 919 Blast hits to 884 proteins in 120 species: Archae - 0; Bacteria - 10; Metazoa - 2; Fungi - 0; Plants - 906; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G03880.1p transcript_id AT1G03880.1 protein_id AT1G03880.1p transcript_id AT1G03880.1
At1g03890	chr1:000989250	0.0	W/989250-989550,989653-989918,990049-990459,990531-990908	AT1G03890.1 CDS RmlC-like cupins superfamily protein [TAIR10] CDS gene_syn F21M11.18, F21M11_18 go_component endomembrane system|GO:0012505||IEA go_function nutrient reservoir activity|GO:0045735||IEA go_process biological_process|GO:0008150||ND go_function nutrient reservoir activity|GO:0045735||ISS product RmlC-like cupins superfamily protein note RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 1003 Blast hits to 963 proteins in 175 species: Archae - 0; Bacteria - 136; Metazoa - 2; Fungi - 2; Plants - 862; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G03890.1p transcript_id AT1G03890.1 protein_id AT1G03890.1p transcript_id AT1G03890.1
At1g03900	chr1:000991252	0.0	W/991252-991746,992443-992691,992778-992852	AT1G03900.1 CDS non-intrinsic ABC protein 4 [TAIR10] CDS gene_syn ATNAP4, F21M11.36, NAP4, non-intrinsic ABC protein 4 gene NAP4 function member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain. go_component membrane|GO:0016020||IEA go_process extracellular transport|GO:0006858|11346655|ISS go_function transporter activity|GO:0005215||ISS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS product non-intrinsic ABC protein 4 note non-intrinsic ABC protein 4 (NAP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: extracellular transport; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: Adaptin ear-binding coat-associated protein 1 NECAP-1 (TAIR:AT3G58600.1); Has 448 Blast hits to 448 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 61; Plants - 115; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). protein_id AT1G03900.1p transcript_id AT1G03900.1 protein_id AT1G03900.1p transcript_id AT1G03900.1
At1g03905	chr1:000993478	0.0	W/993478-993631,994046-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS go_function nucleotide binding|GO:0000166||IEA go_function ATP binding|GO:0005524||IEA go_function ATPase activity|GO:0016887||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G44110.1); Has 185812 Blast hits to 177765 proteins in 3375 species: Archae - 3786; Bacteria - 158244; Metazoa - 1934; Fungi - 1485; Plants - 1792; Viruses - 4; Other Eukaryotes - 18567 (source: NCBI BLink). protein_id AT1G03905.1p transcript_id AT1G03905.1 protein_id AT1G03905.1p transcript_id AT1G03905.1
AT1G03905	chr1:000994084	0.0	W/994084-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.2 AT1G03905.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G03905	chr1:000994084	0.0	W/994084-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.3 AT1G03905.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G03905	chr1:000994084	0.0	W/994084-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.4 AT1G03905.4 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g03910	chr1:000996432	0.0	W/996432-996734,996848-996939,997177-997276,997418-997489,997604-997666,997755-997895,998169-998300,998420-998515,998733-999017,999109-999411,999504-999680,999760-1000026,1000112-1000231	AT1G03910.2 CDS cactus-binding carboxy-terminal, cactin [TAIR10] CDS gene_syn F21M11.16, F21M11_16 product unknown protein note EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2). protein_id AT1G03910.2p transcript_id AT1G03910.2 protein_id AT1G03910.2p transcript_id AT1G03910.2
At1g03910	chr1:000996432	0.0	W/996432-996734,996848-996939,997177-997276,997418-997489,997604-997666,997755-997895,998420-998515,998733-999017,999109-999411,999504-999680,999760-1000026,1000112-1000231	AT1G03910.1 CDS cactus-binding carboxy-terminal, cactin [TAIR10] CDS gene_syn F21M11.16, F21M11_16 product unknown protein note EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). protein_id AT1G03910.1p transcript_id AT1G03910.1 protein_id AT1G03910.1p transcript_id AT1G03910.1
At1g03920	chr1:001001473	0.0	W/1001473-1001747,1001809-1002067,1002143-1002384,1002471-1002687,1002783-1002862,1002948-1003032,1003137-1003268,1003389-1003502,1003607-1003654,1003810-1003894,1003971-1004027,1004125-1004240	AT1G03920.1 CDS Protein kinase family protein [TAIR10] CDS gene_syn F21M11.15, F21M11_15 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_component cytosol|GO:0005829|18433157|IDA go_function kinase activity|GO:0016301|13678909|ISS go_function kinase activity|GO:0016301||ISS product Protein kinase family protein note Protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (TAIR:AT2G20470.1); Has 109567 Blast hits to 108299 proteins in 4009 species: Archae - 130; Bacteria - 13646; Metazoa - 38992; Fungi - 11695; Plants - 26009; Viruses - 442; Other Eukaryotes - 18653 (source: NCBI BLink). protein_id AT1G03920.1p transcript_id AT1G03920.1 protein_id AT1G03920.1p transcript_id AT1G03920.1
AT1G03920	chr1:001001473	0.0	W/1001473-1001747,1001809-1002067,1002143-1002384,1002471-1002687,1002783-1002862,1002948-1003032,1003137-1003268,1003389-1003502,1003607-1003654,1003810-1003894,1003971-1004027,1004125-1004240	AT1G03920.3 AT1G03920.3 CDS Protein kinase family protein
AT1G03920	chr1:001001873	0.0	W/1001873-1002067,1002143-1002384,1002471-1002687,1002783-1002862,1002948-1003032,1003137-1003268,1003389-1003502,1003607-1003654,1003810-1003894,1003971-1004027,1004125-1004240	AT1G03920.2 AT1G03920.2 CDS Protein kinase family protein
At1g03930	chr1:001005439	0.0	W/1005439-1005514,1005612-1005652,1005746-1005815,1005926-1006074,1006176-1006271,1006428-1006498,1006581-1006642,1006734-1006797,1006917-1007001,1007081-1007207,1007290-1007375,1007459-1007525,1007602-1007732,1007828-1008118	AT1G03930.1 CDS dual specificity kinase 1 [TAIR10] CDS gene_syn ADK1, CASEIN KINASE I-LIKE 9 ALPHA, CASEIN KINASE I-LIKE 9 BETA, CKL9ALPHA, CKL9BETA, DUAL SPECIFICITY KINASE 1, F21M11.14, F21M11_14, dual specificity kinase 1 gene ADK1 function Phosphorylates serine, threonine, and tyrosine go_component nucleus|GO:0005634|16126836|IDA go_component cytoplasm|GO:0005737|16126836|IDA go_process signal transduction|GO:0007165|7527390|TAS go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|7527390|IDA go_function kinase activity|GO:0016301||ISS product dual specificity kinase 1 note dual specificity kinase 1 (ADK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 7 (TAIR:AT5G44100.1); Has 64744 Blast hits to 58833 proteins in 2294 species: Archae - 36; Bacteria - 9751; Metazoa - 22487; Fungi - 6187; Plants - 10395; Viruses - 402; Other Eukaryotes - 15486 (source: NCBI BLink). protein_id AT1G03930.1p transcript_id AT1G03930.1 protein_id AT1G03930.1p transcript_id AT1G03930.1
At1g03935	chr1:001008810	0.0	W/1008810-1008896	AT1G03935.1 [TAIR10] snoRNA gene_syn 50728.SNORNA00002 go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G03935.1
At1g03940	chr1:001009542	0.0	C/1009542-1010951	AT1G03940.1 CDS HXXXD-type acyl-transferase family protein [TAIR10] CDS gene_syn F21M11.13, F21M11_13 go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function transferase activity|GO:0016740||ISS product HXXXD-type acyl-transferase family protein note HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G03495.1); Has 1873 Blast hits to 1858 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 18; Plants - 1853; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G03940.1p transcript_id AT1G03940.1 protein_id AT1G03940.1p transcript_id AT1G03940.1
At1g03950	chr1:001011388	0.0	C/1011388-1011433,1011502-1011557,1011654-1011689,1011778-1011858,1011942-1012013,1012165-1012236,1012335-1012439,1012509-1012559,1012646-1012680,1012868-1012912,1013179-1013212	AT1G03950.1 CDS vacuolar protein sorting-associated protein 2.3 [TAIR10] CDS gene_syn F21M11.12, F21M11_12, VPS2, VPS2.3, vacuolar protein sorting-associated protein 2.3 gene VPS2.3 go_component ESCRT III complex|GO:0000815|17090720|ISS go_process vesicle-mediated transport|GO:0016192|16488176|ISS product vacuolar protein sorting-associated protein 2.3 note vacuolar protein sorting-associated protein 2.3 (VPS2.3); CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G44560.1); Has 1693 Blast hits to 1691 proteins in 237 species: Archae - 2; Bacteria - 12; Metazoa - 754; Fungi - 334; Plants - 366; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink). protein_id AT1G03950.1p transcript_id AT1G03950.1 protein_id AT1G03950.1p transcript_id AT1G03950.1
At1g03960	chr1:001014085	0.0	W/1014085-1014237,1014334-1014543,1014767-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.1 CDS Calcium-binding EF hand family protein [TAIR10] CDS gene_syn F21M11.11, F21M11_11 go_function calcium ion binding|GO:0005509||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product Calcium-binding EF hand family protein note Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1); Has 707 Blast hits to 703 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 370; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). protein_id AT1G03960.1p transcript_id AT1G03960.1 protein_id AT1G03960.1p transcript_id AT1G03960.1
AT1G03960	chr1:001014085	0.0	W/1014085-1014237,1014334-1014543,1014767-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017237	AT1G03960.5 AT1G03960.5 CDS Calcium-binding EF hand family protein
AT1G03960	chr1:001014191	0.0	W/1014191-1014237,1014414-1014543,1014767-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.6 AT1G03960.6 CDS Calcium-binding EF hand family protein
At1g03960	chr1:001014824	0.0	W/1014824-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.2 CDS Calcium-binding EF hand family protein [TAIR10] CDS gene_syn F21M11.11, F21M11_11 go_function calcium ion binding|GO:0005509||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product Calcium-binding EF hand family protein note Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03960.2p transcript_id AT1G03960.2 protein_id AT1G03960.2p transcript_id AT1G03960.2
AT1G03960	chr1:001014824	0.0	W/1014824-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.3 AT1G03960.3 CDS Calcium-binding EF hand family protein
AT1G03960	chr1:001014824	0.0	W/1014824-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.4 AT1G03960.4 CDS Calcium-binding EF hand family protein
AT1G03960	chr1:001015233	0.0	W/1015233-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.7 AT1G03960.7 CDS Calcium-binding EF hand family protein
At1g03970	chr1:001018237	0.0	W/1018237-1019049	AT1G03970.1 CDS G-box binding factor 4 [TAIR10] CDS gene_syn F21M11.10, F21M11_10, G-box binding factor 4, GBF4 gene GBF4 function encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634|9193069|IDA go_function DNA binding|GO:0003677|8146148|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function sequence-specific DNA binding|GO:0043565|8146148|IDA product G-box binding factor 4 note G-box binding factor 4 (GBF4); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT5G44080.1); Has 1357 Blast hits to 1357 proteins in 128 species: Archae - 0; Bacteria - 6; Metazoa - 355; Fungi - 8; Plants - 931; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). protein_id AT1G03970.1p transcript_id AT1G03970.1 protein_id AT1G03970.1p transcript_id AT1G03970.1
At1g03980	chr1:001019311	0.0	C/1019311-1019394,1019604-1019779,1019906-1020092,1020187-1020414,1020513-1020564,1020655-1020818,1020982-1021194	AT1G03980.1 CDS phytochelatin synthase 2 [TAIR10] CDS gene_syn ATPCS2, F21M11.9, F21M11_9, PCS2, phytochelatin synthase 2 gene PCS2 function Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1, explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null). go_component cellular_component|GO:0005575||ND go_process phytochelatin biosynthetic process|GO:0046938|11684101|IDA go_process phytochelatin biosynthetic process|GO:0046938||ISS go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|11684101|IDA go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756||ISS product phytochelatin synthase 2 note phytochelatin synthase 2 (PCS2); CONTAINS InterPro DOMAIN/s: Phytochelatin synthase, C-terminal (InterPro:IPR015407), Phytochelatin synthase (InterPro:IPR007719); BEST Arabidopsis thaliana protein match is: phytochelatin synthase 1 (PCS1) (TAIR:AT5G44070.1); Has 342 Blast hits to 342 proteins in 145 species: Archae - 0; Bacteria - 138; Metazoa - 36; Fungi - 7; Plants - 117; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G03980.1p transcript_id AT1G03980.1 protein_id AT1G03980.1p transcript_id AT1G03980.1
AT1G03980	chr1:001019311	0.0	C/1019311-1019394,1019604-1019779,1019906-1020092,1020187-1020414,1020513-1020564,1020655-1020818,1020982-1021220,1021287-1021443,1021800-1021871	AT1G03980.3 AT1G03980.3 CDS phytochelatin synthase 2
AT1G03980	chr1:001019311	0.0	C/1019311-1019394,1019604-1019779,1019906-1020092,1020187-1020414,1020513-1020564,1020655-1020818,1020982-1021443,1021800-1021871	AT1G03980.2 AT1G03980.2 CDS phytochelatin synthase 2
AT1G03980	chr1:001019871	0.0	C/1019871-1020092,1020187-1020414,1020513-1020564,1020655-1020818,1020982-1021220,1021287-1021443,1021800-1021871	AT1G03980.4 AT1G03980.4 CDS phytochelatin synthase 2
At1g03982	chr1:001022424	0.0	C/1022424-1022746,1022831-1022912,1023008-1023136	AT1G03982.1 CDS PAK-box/P21-Rho-binding family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product PAK-box/P21-Rho-binding family protein note PAK-box/P21-Rho-binding family protein; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: PAK-box/P21-Rho-binding family protein (TAIR:AT4G28556.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G03982.1p transcript_id AT1G03982.1 protein_id AT1G03982.1p transcript_id AT1G03982.1
At1g03990	chr1:001024847	0.0	W/1024847-1025095,1025293-1025568,1025865-1027616	AT1G03990.1 CDS Long-chain fatty alcohol dehydrogenase family protein [TAIR10] CDS gene_syn F21M11.7, F21M11_7 go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA go_function FAD binding|GO:0050660||IEA go_function oxidoreductase activity|GO:0016491||ISS product Long-chain fatty alcohol dehydrogenase family protein note Long-chain fatty alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT4G28570.1); Has 3131 Blast hits to 2994 proteins in 799 species: Archae - 23; Bacteria - 2103; Metazoa - 14; Fungi - 174; Plants - 167; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink). protein_id AT1G03990.1p transcript_id AT1G03990.1 protein_id AT1G03990.1p transcript_id AT1G03990.1
At1g04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.1 CDS hypothetical protein [TAIR10] CDS gene_syn F21M11.6, F21M11_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04000.1p transcript_id AT1G04000.1 protein_id AT1G04000.1p transcript_id AT1G04000.1
AT1G04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.2 AT1G04000.2 CDS hypothetical protein
AT1G04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.3 AT1G04000.3 CDS hypothetical protein
AT1G04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.4 AT1G04000.4 CDS hypothetical protein
AT1G04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.5 AT1G04000.5 CDS hypothetical protein
AT1G04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.6 AT1G04000.6 CDS hypothetical protein
AT1G04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.7 AT1G04000.7 CDS hypothetical protein
AT1G04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.8 AT1G04000.8 CDS hypothetical protein
AT1G04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.9 AT1G04000.9 CDS hypothetical protein
At1g04010	chr1:001031703	0.0	C/1031703-1031784,1031901-1031985,1032059-1032163,1032244-1032412,1032582-1032653,1032808-1032859,1033187-1033281,1033438-1033537,1033876-1034029,1034122-1034338,1034702-1034778,1034886-1035055,1035140-1035284,1035383-1035518,1035886-1036128	AT1G04010.1 CDS phospholipid sterol acyl transferase 1 [TAIR10] CDS gene_syn ATPSAT1, F21M11.5, F21M11_5, PSAT1, phospholipid sterol acyl transferase 1 gene PSAT1 go_component microsome|GO:0005792|16020547|IDA go_process lipid metabolic process|GO:0006629||ISS go_process leaf senescence|GO:0010150|19923239|IMP go_process sterol catabolic process|GO:0016127|19923239|IMP go_process sterol esterification|GO:0034434|16020547|IDA go_process sterol esterification|GO:0034434|16020547|IMP go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607|16020547|IDA go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS go_function phosphatidylethanolamine-sterol O-acyltransferase activity|GO:0080095|16020547|IDA go_function phosphatidate-sterol O-acyltransferase activity|GO:0080096|16020547|IDA product phospholipid sterol acyl transferase 1 note phospholipid sterol acyl transferase 1 (PSAT1); CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: phospholipid:diacylglycerol acyltransferase (TAIR:AT5G13640.1); Has 615 Blast hits to 606 proteins in 192 species: Archae - 0; Bacteria - 2; Metazoa - 241; Fungi - 118; Plants - 150; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). protein_id AT1G04010.1p transcript_id AT1G04010.1 protein_id AT1G04010.1p transcript_id AT1G04010.1
At1g04020	chr1:001036610	0.0	W/1036610-1036692,1036797-1036850,1036944-1037014,1037089-1037441,1037531-1037746,1037924-1038175,1038276-1038376,1038519-1038705,1038801-1038898,1038995-1039085,1039224-1039389,1039488-1039606,1039695-1040045	AT1G04020.1 CDS breast cancer associated RING 1 [TAIR10] CDS gene_syn ATBARD1, BARD1, F21M11.4, F21M11_4, ROW1, breast cancer associated RING 1 gene BARD1 function Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. go_component intracellular|GO:0005622||IEA go_component intracellular|GO:0005622||ISS go_process DNA repair|GO:0006281|16957774|IMP go_process regulation of meristem structural organization|GO:0009934|18591352|IMP go_process leaf development|GO:0048366|18591352|IMP go_function DNA binding|GO:0003677|18591352|IDA go_function transcription coactivator activity|GO:0003713||ISS product breast cancer associated RING 1 note breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 5889 Blast hits to 5527 proteins in 313 species: Archae - 0; Bacteria - 10; Metazoa - 4435; Fungi - 374; Plants - 570; Viruses - 11; Other Eukaryotes - 489 (source: NCBI BLink). protein_id AT1G04020.1p transcript_id AT1G04020.1 protein_id AT1G04020.1p transcript_id AT1G04020.1
At1g04020	chr1:001036610	0.0	W/1036610-1036692,1036797-1036850,1036944-1037018,1037093-1037441,1037531-1037746,1037924-1038175,1038276-1038376,1038519-1038705,1038801-1038898,1038995-1039085,1039224-1039389,1039488-1039606,1039695-1040045	AT1G04020.2 CDS breast cancer associated RING 1 [TAIR10] CDS gene_syn ATBARD1, BARD1, F21M11.4, F21M11_4, ROW1, breast cancer associated RING 1 gene BARD1 function Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. go_component intracellular|GO:0005622||IEA go_component intracellular|GO:0005622||ISS go_process DNA repair|GO:0006281|16957774|IMP go_process regulation of meristem structural organization|GO:0009934|18591352|IMP go_process leaf development|GO:0048366|18591352|IMP go_function DNA binding|GO:0003677|18591352|IDA go_function transcription coactivator activity|GO:0003713||ISS product breast cancer associated RING 1 note breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink). protein_id AT1G04020.2p transcript_id AT1G04020.2 protein_id AT1G04020.2p transcript_id AT1G04020.2
At1g04030	chr1:001040597	0.0	W/1040597-1040680,1040874-1040974,1041049-1042093,1042239-1042313	AT1G04030.1 CDS eisosome protein [TAIR10] CDS gene_syn F21M11.3, F21M11_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants - 187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink). protein_id AT1G04030.1p transcript_id AT1G04030.1 protein_id AT1G04030.1p transcript_id AT1G04030.1
AT1G04030	chr1:001040597	0.0	W/1040597-1040680,1040874-1040974,1041049-1042093,1042239-1042313	AT1G04030.2 AT1G04030.2 CDS eisosome protein
At1g04040	chr1:001042564	0.0	C/1042564-1042741,1042954-1043163,1043392-1043819	AT1G04040.1 CDS HAD superfamily, subfamily IIIB acid phosphatase [TAIR10] CDS gene_syn F21M11.2, F21M11_2 go_component cell wall|GO:0005618|16287169|IDA go_component vacuole|GO:0005773|15215502|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_function acid phosphatase activity|GO:0003993||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_process biological_process|GO:0008150||ND go_function acid phosphatase activity|GO:0003993||ISS product HAD superfamily, subfamily IIIB acid phosphatase note HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT5G44020.1); Has 1079 Blast hits to 1077 proteins in 335 species: Archae - 0; Bacteria - 592; Metazoa - 2; Fungi - 0; Plants - 364; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). protein_id AT1G04040.1p transcript_id AT1G04040.1 protein_id AT1G04040.1p transcript_id AT1G04040.1
AT1G04050	chr1:001045967	0.0	C/1045967-1045995,1046099-1046195,1046329-1046379,1046470-1046536,1046624-1046877,1046987-1048005,1048152-1048422,1048499-1048603	AT1G04050.3 AT1G04050.3 CDS homolog of SU(var)3-9 1
At1g04050	chr1:001045967	0.0	C/1045967-1045995,1046099-1046195,1046329-1046379,1046470-1046536,1046624-1046877,1046987-1048005,1048152-1048422,1048499-1048630,1048720-1048758,1048853-1048915,1049014-1049196	AT1G04050.1 CDS homolog of SU(var)3-9 1 [TAIR10] CDS gene_syn AT1G04060, F21M11.35, F21M11_35, SDG13, SET DOMAIN PROTEIN 13, SUVR1, homolog of SU(var)3-9 1 gene SUVR1 function Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression. go_process chromatin modification|GO:0016568||IEA go_function zinc ion binding|GO:0008270||IEA go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA go_component nucleolus|GO:0005730|17020925|IDA product homolog of SU(var)3-9 1 note homolog of SU(var)3-9 1 (SUVR1); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SET-domain containing protein lysine methyltransferase family protein (TAIR:AT5G43990.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G04050.1p transcript_id AT1G04050.1 protein_id AT1G04050.1p transcript_id AT1G04050.1
AT1G04050	chr1:001045967	0.0	C/1045967-1045995,1046099-1046195,1046329-1046379,1046470-1046536,1046624-1046877,1046987-1048005,1048152-1048422,1048499-1048630,1048720-1048758,1048853-1048915,1049014-1049196	AT1G04050.2 AT1G04050.2 CDS homolog of SU(var)3-9 1
At1g04070	chr1:001050832	0.0	C/1050832-1051116	AT1G04070.1 CDS translocase of outer membrane 22-I [TAIR10] CDS gene_syn ATTOM22-I, F20D22.15, TOM22, TOM22-I, translocase of outer membrane 22-I gene TOM22-I function Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion. go_component mitochondrial outer membrane translocase complex|GO:0005742|10889230|ISS go_process protein targeting to mitochondrion|GO:0006626|10889230|ISS go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|10889230|ISS product translocase of outer membrane 22-I note translocase of outer membrane 22-I (TOM22-I); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrial outer membrane translocase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial outer membrane translocase complex, subunit Tom22, plant (InterPro:IPR017411); BEST Arabidopsis thaliana protein match is: translocase of outer membrane 22-V (TAIR:AT5G43970.1); Has 73 Blast hits to 73 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04070.1p transcript_id AT1G04070.1 protein_id AT1G04070.1p transcript_id AT1G04070.1
At1g04080	chr1:001051803	0.0	W/1051803-1052037,1052160-1052269,1052546-1052775,1053327-1053494,1053807-1054200,1054285-1054385,1054465-1054528,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.3 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F20D22.14, PRP39 gene PRP39 go_component intracellular|GO:0005622||IEA go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16807317|IMP product Tetratricopeptide repeat (TPR)-like superfamily protein note PRP39; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1). protein_id AT1G04080.3p transcript_id AT1G04080.3 protein_id AT1G04080.3p transcript_id AT1G04080.3
At1g04080	chr1:001051803	0.0	W/1051803-1052037,1052160-1052269,1052546-1052775,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F20D22.14, PRP39 gene PRP39 go_component intracellular|GO:0005622||IEA go_component nucleus|GO:0005634||IEA go_function binding|GO:0005488||IEA go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16807317|IMP product Tetratricopeptide repeat (TPR)-like superfamily protein note PRP39; FUNCTIONS IN: binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1); Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0; Bacteria - 599; Metazoa - 1588; Fungi - 801; Plants - 439; Viruses - 72; Other Eukaryotes - 418 (source: NCBI BLink). protein_id AT1G04080.1p transcript_id AT1G04080.1 protein_id AT1G04080.1p transcript_id AT1G04080.1
AT1G04080	chr1:001051803	0.0	W/1051803-1052037,1052160-1052269,1052546-1052775,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.4 AT1G04080.4 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g04080	chr1:001053171	0.0	W/1053171-1053187,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F20D22.14, PRP39 gene PRP39 go_component intracellular|GO:0005622||IEA go_function binding|GO:0005488||IEA go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16807317|IMP product Tetratricopeptide repeat (TPR)-like superfamily protein note PRP39; FUNCTIONS IN: binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1); Has 1033 Blast hits to 958 proteins in 272 species: Archae - 0; Bacteria - 147; Metazoa - 339; Fungi - 222; Plants - 216; Viruses - 4; Other Eukaryotes - 105 (source: NCBI BLink). protein_id AT1G04080.2p transcript_id AT1G04080.2 protein_id AT1G04080.2p transcript_id AT1G04080.2
AT1G04080	chr1:001053171	0.0	W/1053171-1053187,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.6 AT1G04080.6 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G04080	chr1:001053409	0.0	W/1053409-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.5 AT1G04080.5 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g04090	chr1:001057225	0.0	W/1057225-1057330,1057635-1059247	AT1G04090.1 CDS vacuolar sorting-associated protein (DUF946) [TAIR10] CDS gene_syn F20D22.17, F20D22_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF946) note Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G43950.1); Has 349 Blast hits to 319 proteins in 89 species: Archae - 0; Bacteria - 23; Metazoa - 11; Fungi - 104; Plants - 206; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G04090.1p transcript_id AT1G04090.1 protein_id AT1G04090.1p transcript_id AT1G04090.1
AT1G04105	chr1:001059730	0.0	C/1059730-1060065,1060283-1060348	AT1G04105.1 AT1G04105.1 CDS hypothetical protein
At1g04100	chr1:001059809	0.0	W/1059809-1060080,1060324-1060634,1060732-1060864,1060957-1061026	AT1G04100.1 CDS indoleacetic acid-induced protein 10 [TAIR10] CDS gene_syn AUXIN-INDUCED PROTEIN 10, F20D22.13, F20D22_13, IAA10, indoleacetic acid-induced protein 10 gene IAA10 function Auxin induced gene, IAA10 (IAA10). go_component nucleus|GO:0005634||IEA go_process response to auxin stimulus|GO:0009733|12036262|TAS go_process response to chitin|GO:0010200|17722694|IEP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product indoleacetic acid-induced protein 10 note indoleacetic acid-induced protein 10 (IAA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 11 (TAIR:AT4G28640.3); Has 1513 Blast hits to 1512 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1512; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G04100.1p transcript_id AT1G04100.1 protein_id AT1G04100.1p transcript_id AT1G04100.1
At1g04110	chr1:001061457	0.0	C/1061457-1063784	AT1G04110.1 CDS Subtilase family protein [TAIR10] CDS gene_syn F20D22.12, F20D22_12, SDD1, STOMATAL DENSITY AND DISTRIBUTION gene SDD1 function Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases. go_component external side of plasma membrane|GO:0009897|12119372|IDA go_process proteolysis|GO:0006508||ISS go_process stomatal complex morphogenesis|GO:0010103|10809670|IMP go_process regulation of cell proliferation|GO:0042127|10809670|IMP go_function serine-type endopeptidase activity|GO:0004252|12119372|ISS product Subtilase family protein note STOMATAL DENSITY AND DISTRIBUTION (SDD1); CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT2G05920.1); Has 8825 Blast hits to 7601 proteins in 1230 species: Archae - 300; Bacteria - 5187; Metazoa - 188; Fungi - 495; Plants - 1932; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). protein_id AT1G04110.1p transcript_id AT1G04110.1 protein_id AT1G04110.1p transcript_id AT1G04110.1
At1g04120	chr1:001064848	0.0	C/1064848-1064960,1065055-1065279,1065380-1065443,1065550-1065855,1065935-1066149,1066231-1066525,1066607-1066771,1066852-1067550,1067763-1067849,1067927-1068247,1068357-1070396	AT1G04120.2 CDS multidrug resistance-associated protein 5 [TAIR10] CDS gene_syn ABCC5, ARABIDOPSIS THALIANA ATP BINDING CASSETTE TRANSPORTER C5, ATABCC5, ATMRP5, ATP BINDING CASSETTE TRANSPORTER C5, MRP5, MULTIDRUG RESISTANCE PROTEIN 5, multidrug resistance-associated protein 5 gene MRP5 function encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. go_component vacuolar membrane|GO:0005774|16618929|IDA go_process response to salt stress|GO:0009651|14684837|IMP go_process cellular potassium ion homeostasis|GO:0030007|14684837|IMP go_function sulfonylurea receptor activity|GO:0008281|14684837|IDA go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS product multidrug resistance-associated protein 5 note multidrug resistance-associated protein 5 (MRP5); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 3 (TAIR:AT3G13080.1). protein_id AT1G04120.2p transcript_id AT1G04120.2 protein_id AT1G04120.2p transcript_id AT1G04120.2
AT1G04120	chr1:001064848	0.0	C/1064848-1064960,1065055-1065294,1065380-1065443,1065550-1065855,1065935-1066149,1066231-1066525,1066607-1066771,1066852-1067550,1067763-1067849,1067927-1068247,1068357-1068736,1068842-1070396	AT1G04120.3 AT1G04120.3 CDS multidrug resistance-associated protein 5
At1g04120	chr1:001064848	0.0	C/1064848-1064960,1065055-1065294,1065380-1065443,1065550-1065855,1065935-1066149,1066231-1066525,1066607-1066771,1066852-1067550,1067763-1067849,1067927-1068247,1068357-1070396	AT1G04120.1 CDS multidrug resistance-associated protein 5 [TAIR10] CDS gene_syn ABCC5, ARABIDOPSIS THALIANA ATP BINDING CASSETTE TRANSPORTER C5, ATABCC5, ATMRP5, ATP BINDING CASSETTE TRANSPORTER C5, MRP5, MULTIDRUG RESISTANCE PROTEIN 5, multidrug resistance-associated protein 5 gene MRP5 function encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. go_component plant-type vacuole|GO:0000325|16618929|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component vacuolar membrane|GO:0005774|16618929|IDA go_process response to salt stress|GO:0009651|14684837|IMP go_process cellular potassium ion homeostasis|GO:0030007|14684837|IMP go_function sulfonylurea receptor activity|GO:0008281|14684837|IDA go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS product multidrug resistance-associated protein 5 note multidrug resistance-associated protein 5 (MRP5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, sulfonylurea receptor activity; INVOLVED IN: response to salt stress, cellular potassium ion homeostasis; LOCATED IN: vacuolar membrane, plasma membrane, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 3 (TAIR:AT3G13080.1); Has 705301 Blast hits to 367091 proteins in 4105 species: Archae - 12555; Bacteria - 572920; Metazoa - 12444; Fungi - 7893; Plants - 6883; Viruses - 23; Other Eukaryotes - 92583 (source: NCBI BLink). protein_id AT1G04120.1p transcript_id AT1G04120.1 protein_id AT1G04120.1p transcript_id AT1G04120.1
At1g04130	chr1:001073465	0.0	W/1073465-1073569,1073649-1073861,1073940-1074131,1074225-1074425,1074530-1074610,1074898-1075021,1075108-1075200,1075301-1075374	AT1G04130.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F20D22.10, F20D22_10 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G56440.1); Has 5277 Blast hits to 4657 proteins in 398 species: Archae - 14; Bacteria - 308; Metazoa - 2191; Fungi - 837; Plants - 950; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink). protein_id AT1G04130.1p transcript_id AT1G04130.1 protein_id AT1G04130.1p transcript_id AT1G04130.1
AT1G04130	chr1:001073835	0.0	W/1073835-1073861,1073940-1074131,1074225-1074425,1074530-1074610,1074898-1075021,1075108-1075200,1075301-1075374	AT1G04130.2 AT1G04130.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g04140	chr1:001075984	0.0	C/1075984-1076010,1076136-1076225,1076311-1076424,1076566-1076679,1076872-1076932,1077036-1077236,1077341-1078353,1078427-1078552,1078682-1078749,1078838-1078946,1079246-1079330,1079410-1079526,1079621-1079779,1080233-1080321	AT1G04140.1 CDS Transducin family protein / WD-40 repeat family protein [TAIR10] CDS gene_syn F20D22.9, F20D22_9 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product Transducin family protein / WD-40 repeat family protein note Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G43930.3); Has 24573 Blast hits to 11855 proteins in 489 species: Archae - 64; Bacteria - 6146; Metazoa - 7827; Fungi - 5629; Plants - 2084; Viruses - 0; Other Eukaryotes - 2823 (source: NCBI BLink). protein_id AT1G04140.1p transcript_id AT1G04140.1 protein_id AT1G04140.1p transcript_id AT1G04140.1
At1g04140	chr1:001075992	0.0	C/1075992-1076010,1076119-1076225,1076311-1076424,1076566-1076679,1076872-1076932,1077036-1077236,1077341-1078353,1078427-1078552,1078682-1078749,1078838-1078946,1079246-1079330,1079410-1079526,1079621-1079779,1080233-1080321	AT1G04140.2 CDS Transducin family protein / WD-40 repeat family protein [TAIR10] CDS gene_syn F20D22.9, F20D22_9 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product Transducin family protein / WD-40 repeat family protein note Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G43930.3); Has 24502 Blast hits to 11850 proteins in 489 species: Archae - 64; Bacteria - 6127; Metazoa - 7778; Fungi - 5629; Plants - 2081; Viruses - 0; Other Eukaryotes - 2823 (source: NCBI BLink). protein_id AT1G04140.2p transcript_id AT1G04140.2 protein_id AT1G04140.2p transcript_id AT1G04140.2
At1g04150	chr1:001081208	0.0	C/1081208-1084246	AT1G04150.1 CDS C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [TAIR10] CDS gene_syn F20D22.8, F20D22_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product C2 calcium/lipid-binding plant phosphoribosyltransferase family protein note C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT4G11610.1); Has 3504 Blast hits to 2915 proteins in 204 species: Archae - 0; Bacteria - 2; Metazoa - 2158; Fungi - 82; Plants - 979; Viruses - 2; Other Eukaryotes - 281 (source: NCBI BLink). protein_id AT1G04150.1p transcript_id AT1G04150.1 protein_id AT1G04150.1p transcript_id AT1G04150.1
At1g04160	chr1:001086495	0.0	W/1086495-1086497,1087114-1087242,1087370-1087513,1087657-1087802,1087890-1088049,1088251-1088309,1088411-1088570,1088664-1088813,1088895-1089031,1089121-1089267,1089393-1089494,1089912-1089969,1090061-1090162,1090406-1090443,1090567-1090693,1090815-1090982,1091074-1091205,1091304-1091413,1091502-1091562,1091656-1091833,1091926-1092131,1092302-1092421,1092572-1092670,1092776-1092988,1093109-1093248,1093336-1093450,1093541-1093585,1093692-1093742,1093825-1093995,1094312-1094464,1094551-1094742,1094901-1095029,1095107-1095177,1095347-1095443,1095518-1095574,1095665-1095721,1095804-1095967,1096035-1096146	AT1G04160.1 CDS myosin XI B [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA MYOSIN XI B, ATXIB, F20D22.7, F20D22_7, MYOSIN XI B, MYOSIN XI-8, XI-8, XI-B, XIB, myosin XI B gene XIB function Encodes a member of the type XI myosin protein family involved in root hair elongation. go_component myosin complex|GO:0016459||IEA go_process actin filament-based movement|GO:0030048|11516337|TAS go_process root hair elongation|GO:0048767|19060218|IGI go_function motor activity|GO:0003774|11516337|ISS product myosin XI B note myosin XI B (XIB); FUNCTIONS IN: motor activity; INVOLVED IN: root hair elongation, actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.3); Has 26358 Blast hits to 18103 proteins in 1674 species: Archae - 321; Bacteria - 2193; Metazoa - 15182; Fungi - 1812; Plants - 1278; Viruses - 89; Other Eukaryotes - 5483 (source: NCBI BLink). protein_id AT1G04160.1p transcript_id AT1G04160.1 protein_id AT1G04160.1p transcript_id AT1G04160.1
AT1G04160	chr1:001086495	0.0	W/1086495-1086497,1087114-1087242,1087370-1087513,1087657-1087802,1087890-1088049,1088251-1088309,1088411-1088570,1088664-1088813,1088895-1089031,1089121-1089267,1089393-1089494,1089912-1089969,1090061-1090162,1090406-1090443,1090567-1090693,1090815-1090982,1091074-1091205,1091304-1091413,1091502-1091562,1091656-1091833,1091926-1092131,1092302-1092421,1092572-1092670,1092776-1092988,1093109-1093248,1093336-1093450,1093541-1093585,1093692-1093742,1093825-1093995,1094312-1094464,1094551-1094742,1094901-1095029,1095107-1095177,1095347-1095443,1095518-1095595	AT1G04160.2 AT1G04160.2 CDS myosin XI B
At1g04170	chr1:001097423	0.0	W/1097423-1097531,1097619-1097680,1097800-1097912,1097999-1098101,1098379-1098606,1098718-1098936,1099037-1099297,1099400-1099702	AT1G04170.1 CDS eukaryotic translation initiation factor 2 gamma subunit [TAIR10] CDS gene_syn EIF2 GAMMA, F20D22.6, F20D22_6, eukaryotic translation initiation factor 2 gamma subunit gene EIF2 GAMMA function protein synthesis initiation factor eIF2 gamma go_function translation initiation factor activity|GO:0003743||ISS go_function translation factor activity, nucleic acid binding|GO:0008135||ISS product eukaryotic translation initiation factor 2 gamma subunit note eukaryotic translation initiation factor 2 gamma subunit (EIF2 GAMMA); CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT4G18330.2); Has 29259 Blast hits to 29225 proteins in 6532 species: Archae - 651; Bacteria - 17093; Metazoa - 4832; Fungi - 574; Plants - 965; Viruses - 0; Other Eukaryotes - 5144 (source: NCBI BLink). protein_id AT1G04170.1p transcript_id AT1G04170.1 protein_id AT1G04170.1p transcript_id AT1G04170.1
AT1G04170	chr1:001097423	0.0	W/1097423-1097531,1097619-1097680,1097800-1097912,1097999-1098101,1098379-1098606,1098718-1098936,1099037-1099297,1099400-1099702	AT1G04170.2 AT1G04170.2 CDS eukaryotic translation initiation factor 2 gamma subunit
At1g04171	chr1:001100444	0.0	C/1100444-1100608	AT1G04171.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G04171.1p transcript_id AT1G04171.1 protein_id AT1G04171.1p transcript_id AT1G04171.1
At1g04180	chr1:001104623	0.0	W/1104623-1105288,1105389-1105988	AT1G04180.1 CDS YUCCA 9 [TAIR10] CDS gene_syn F20D22.5, F20D22_5, YUC9, YUCCA 9 gene YUC9 go_process oxidation reduction|GO:0055114||IEA go_function flavin-containing monooxygenase activity|GO:0004499||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function NADP or NADPH binding|GO:0050661||IEA go_function monooxygenase activity|GO:0004497||ISS product YUCCA 9 note YUCCA 9 (YUC9); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11871 Blast hits to 11852 proteins in 1762 species: Archae - 17; Bacteria - 7034; Metazoa - 796; Fungi - 1508; Plants - 659; Viruses - 0; Other Eukaryotes - 1857 (source: NCBI BLink). protein_id AT1G04180.1p transcript_id AT1G04180.1 protein_id AT1G04180.1p transcript_id AT1G04180.1
At1g04190	chr1:001106617	0.0	C/1106617-1106692,1106857-1106990,1107070-1107189,1107268-1107447,1107556-1107729,1107820-1107870,1107985-1108078,1108400-1108557	AT1G04190.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F20D22.4, F20D22_4 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 20389 Blast hits to 12924 proteins in 1156 species: Archae - 970; Bacteria - 7001; Metazoa - 4309; Fungi - 1260; Plants - 1634; Viruses - 0; Other Eukaryotes - 5215 (source: NCBI BLink). protein_id AT1G04190.1p transcript_id AT1G04190.1 protein_id AT1G04190.1p transcript_id AT1G04190.1
At1g04200	chr1:001109676	0.0	W/1109676-1109865,1109984-1110223,1110300-1110363,1110457-1110586,1110678-1110819,1110983-1111228,1111305-1111392,1111523-1111625,1111791-1111919,1112001-1112114,1112291-1112409,1112500-1112590,1112689-1112781,1112861-1112950,1113072-1113191,1113301-1113392,1113507-1113564,1113786-1113875	AT1G04200.1 CDS dyggve-melchior-clausen syndrome protein [TAIR10] CDS gene_syn F20D22.3, F20D22_3 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G04200.1p transcript_id AT1G04200.1 protein_id AT1G04200.1p transcript_id AT1G04200.1
AT1G04200	chr1:001109676	0.0	W/1109676-1109865,1109984-1110223,1110300-1110363,1110457-1110586,1110678-1110819,1110983-1111228,1111305-1111392,1111523-1111625,1111791-1111919,1112001-1112114,1112291-1112409,1112500-1112590,1112689-1112781,1112861-1112950,1113072-1113191,1113301-1113392,1113507-1113576	AT1G04200.3 AT1G04200.3 CDS dyggve-melchior-clausen syndrome protein
AT1G04200	chr1:001109676	0.0	W/1109676-1109865,1109984-1110223,1110300-1110363,1110457-1110586,1110678-1110819,1110983-1111228,1111305-1111392,1111523-1111625,1111791-1111919,1112001-1112114,1112291-1112409,1112500-1112590,1112689-1112781,1112861-1113004	AT1G04200.2 AT1G04200.2 CDS dyggve-melchior-clausen syndrome protein
At1g04210	chr1:001114696	0.0	W/1114696-1115192,1115557-1115821,1115938-1116100,1116226-1116961,1117053-1117482,1117575-1117756,1117989-1118145,1118223-1118447,1118531-1118881,1118968-1119069,1119153-1119383	AT1G04210.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn F20D22.2, F20D22_2 function Encodes a putative Raf-related kinase. go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function protein kinase activity|GO:0004672||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G31170.3); Has 130301 Blast hits to 104916 proteins in 2869 species: Archae - 120; Bacteria - 15185; Metazoa - 50195; Fungi - 9983; Plants - 37286; Viruses - 367; Other Eukaryotes - 17165 (source: NCBI BLink). protein_id AT1G04210.1p transcript_id AT1G04210.1 protein_id AT1G04210.1p transcript_id AT1G04210.1
At1g04220	chr1:001119853	0.0	C/1119853-1120671,1121716-1122483	AT1G04220.1 CDS 3-ketoacyl-CoA synthase 2 [TAIR10] CDS gene_syn 3-ketoacyl-CoA synthase 2, F20D22.1, F20D22_1, KCS2 gene KCS2 function Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). go_component membrane|GO:0016020||IEA go_process response to osmotic stress|GO:0006970|18786002|IEP go_process response to wounding|GO:0009611|18786002|IEP go_process suberin biosynthetic process|GO:0010345|18786002|IMP go_function fatty acid elongase activity|GO:0009922|15277688|IDA product 3-ketoacyl-CoA synthase 2 note 3-ketoacyl-CoA synthase 2 (KCS2); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: response to wounding, response to osmotic stress, suberin biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 20 (TAIR:AT5G43760.1); Has 5259 Blast hits to 5241 proteins in 1449 species: Archae - 0; Bacteria - 2406; Metazoa - 0; Fungi - 4; Plants - 2679; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink). protein_id AT1G04220.1p transcript_id AT1G04220.1 protein_id AT1G04220.1p transcript_id AT1G04220.1
At1g04230	chr1:001125576	0.0	W/1125576-1125728,1125995-1126124,1126233-1126363,1126535-1126673,1126848-1126962,1127193-1127256,1127434-1127673,1127823-1127828	AT1G04230.1 CDS rRNA-processing EFG1-like protein (DUF2361) [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF2361) note Protein of unknown function (DUF2361); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2361 (InterPro:IPR019310); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2361) (TAIR:AT5G43720.1); Has 1174 Blast hits to 818 proteins in 194 species: Archae - 0; Bacteria - 26; Metazoa - 566; Fungi - 310; Plants - 87; Viruses - 6; Other Eukaryotes - 179 (source: NCBI BLink). protein_id AT1G04230.1p transcript_id AT1G04230.1 protein_id AT1G04230.1p transcript_id AT1G04230.1
AT1G04230	chr1:001125576	0.0	W/1125576-1125728,1125995-1126124,1126233-1126363,1126535-1126673,1126848-1126962,1127193-1127256,1127437-1127673,1127823-1127828	AT1G04230.2 AT1G04230.2 CDS rRNA-processing EFG1-like protein (DUF2361)
At1g04240	chr1:001128564	0.0	C/1128564-1128639,1128744-1129052,1129135-1129319	AT1G04240.1 CDS AUX/IAA transcriptional regulator family protein [TAIR10] CDS gene_syn F19P19.32, F19P19_32, IAA3, SHORT HYPOCOTYL 2, SHY2, indole-3-acetic acid inducible 3 gene SHY2 function SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. go_component nucleus|GO:0005634||IEA go_process response to auxin stimulus|GO:0009733|11884676|IMP go_process response to brassinosteroid stimulus|GO:0009741|16367964|TAS go_process response to cyclopentenone|GO:0010583|18334669|IEP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product AUX/IAA transcriptional regulator family protein note SHORT HYPOCOTYL 2 (SHY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT5G43700.1); Has 1823 Blast hits to 1821 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1822; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G04240.1p transcript_id AT1G04240.1 protein_id AT1G04240.1p transcript_id AT1G04240.1
AT1G04240	chr1:001128564	0.0	C/1128564-1128639,1128744-1129052,1129135-1129619	AT1G04240.2 AT1G04240.2 CDS AUX/IAA transcriptional regulator family protein
At1g04250	chr1:001136382	0.0	W/1136382-1136620,1136934-1137145,1137460-1137598,1137740-1137801,1138303-1138340	AT1G04250.1 CDS AUX/IAA transcriptional regulator family protein [TAIR10] CDS gene_syn AUXIN RESISTANT 3, AXR3, F19P19.31, F19P19_31, IAA17, indole-3-acetic acid inducible 17 gene AXR3 function Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. go_component proteasome complex|GO:0000502|15994909|IDA go_component nucleus|GO:0005634|15994909|IDA go_component signalosome|GO:0008180|15994909|IDA go_component SCF ubiquitin ligase complex|GO:0019005|15994909|IDA go_process response to auxin stimulus|GO:0009733|12036262|TAS go_process response to auxin stimulus|GO:0009733|17919906|IEP go_process response to auxin stimulus|GO:0009733|9478901|IMP go_process auxin mediated signaling pathway|GO:0009734|11283339|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||NAS product AUX/IAA transcriptional regulator family protein note AUXIN RESISTANT 3 (AXR3); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1763 Blast hits to 1762 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1762; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G04250.1p transcript_id AT1G04250.1 protein_id AT1G04250.1p transcript_id AT1G04250.1
At1g04260	chr1:001140749	0.0	C/1140749-1141297	AT1G04260.1 CDS CAMV movement protein interacting protein 7 [TAIR10] CDS gene_syn CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7, CAMV movement protein interacting protein 7, F19P19.30, F19P19_30, MPI7, MPIP7, PRA1.D, PRENYLATED RAB ACCEPTOR 1.D gene MPI7 function Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors. go_component cytoplasm|GO:0005737|11725951|IDA go_component endoplasmic reticulum|GO:0005783|18583532|IDA go_process vesicle-mediated transport|GO:0016192|18583532|IDA go_process spread of virus in host|GO:0046739|11725951|TAS go_function protein binding|GO:0005515|11725951|IPI product CAMV movement protein interacting protein 7 note CAMV movement protein interacting protein 7 (MPI7); FUNCTIONS IN: protein binding; INVOLVED IN: vesicle-mediated transport, spread of virus in host; LOCATED IN: endoplasmic reticulum, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.E (TAIR:AT1G08770.1); Has 616 Blast hits to 616 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 81; Plants - 374; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). protein_id AT1G04260.1p transcript_id AT1G04260.1 protein_id AT1G04260.1p transcript_id AT1G04260.1
At1g04270	chr1:001141852	0.0	C/1141852-1142100,1142576-1142633,1142721-1142869,1142958-1142960	AT1G04270.1 CDS cytosolic ribosomal protein S15 [TAIR10] CDS gene_syn F19P19.29, F19P19_29, RIBOSOMAL PROTEIN S15, RPS15, cytosolic ribosomal protein S15 gene RPS15 function Encodes cytosolic ribosomal protein S15. go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA go_process translation|GO:0006412|11598216|ISS go_function structural constituent of ribosome|GO:0003735|11598216|ISS product cytosolic ribosomal protein S15 note cytosolic ribosomal protein S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222), Ribosomal protein S19 conserved site (InterPro:IPR020934); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09510.1); Has 8033 Blast hits to 8033 proteins in 2978 species: Archae - 257; Bacteria - 3802; Metazoa - 279; Fungi - 238; Plants - 1557; Viruses - 0; Other Eukaryotes - 1900 (source: NCBI BLink). protein_id AT1G04270.1p transcript_id AT1G04270.1 protein_id AT1G04270.1p transcript_id AT1G04270.1
At1g04270	chr1:001141852	0.0	C/1141852-1142100,1142579-1142633,1142721-1142869,1142958-1142960	AT1G04270.2 CDS cytosolic ribosomal protein S15 [TAIR10] CDS gene_syn F19P19.29, F19P19_29, RIBOSOMAL PROTEIN S15, RPS15, cytosolic ribosomal protein S15 gene RPS15 function Encodes cytosolic ribosomal protein S15. go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA go_process translation|GO:0006412|11598216|ISS go_function structural constituent of ribosome|GO:0003735|11598216|ISS product cytosolic ribosomal protein S15 note cytosolic ribosomal protein S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222), Ribosomal protein S19 conserved site (InterPro:IPR020934); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09510.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G04270.2p transcript_id AT1G04270.2 protein_id AT1G04270.2p transcript_id AT1G04270.2
AT1G04280	chr1:001143643	0.0	C/1143643-1143888,1143980-1144124,1144234-1144556,1144655-1144784,1144876-1145094,1145295-1145359,1145497-1145720,1146141-1146231	AT1G04280.2 AT1G04280.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g04280	chr1:001143643	0.0	C/1143643-1143888,1143980-1144124,1144234-1144556,1144655-1144784,1144876-1145094,1145295-1145359,1145497-1145720,1146141-1146374,1146523-1146541	AT1G04280.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F19P19.28, F19P19_28 go_component membrane|GO:0016020|17432890|IDA go_process cell killing|GO:0001906||IEA go_function ATP binding|GO:0005524||IEA product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cell killing; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06750.2); Has 195 Blast hits to 194 proteins in 47 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 3; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT1G04280.1p transcript_id AT1G04280.1 protein_id AT1G04280.1p transcript_id AT1G04280.1
At1g04290	chr1:001147721	0.0	C/1147721-1147864,1147948-1148091,1148173-1148352	AT1G04290.1 CDS Thioesterase superfamily protein [TAIR10] CDS gene_syn F19P19.27, F19P19_27 go_component peroxisome|GO:0005777|17951448|IDA go_process biological_process|GO:0008150||ND go_function acyl-CoA thioesterase activity|GO:0016291||ISS go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS product Thioesterase superfamily protein note Thioesterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT2G29590.1); Has 964 Blast hits to 962 proteins in 292 species: Archae - 38; Bacteria - 286; Metazoa - 202; Fungi - 157; Plants - 213; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT1G04290.1p transcript_id AT1G04290.1 protein_id AT1G04290.1p transcript_id AT1G04290.1
At1g04295	chr1:001147781	0.0	W/1147781-1148072,1148176-1148435	AT1G04295.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G04290 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G04295.1
AT1G04290	chr1:001147888	0.0	C/1147888-1148091,1148173-1148352	AT1G04290.2 AT1G04290.2 CDS Thioesterase superfamily protein
AT1G04300	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151829	AT1G04300.6 AT1G04300.6 CDS TRAF-like superfamily protein
At1g04300	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152947,1153036-1153124,1153234-1153288,1153718-1153895	AT1G04300.4 CDS TRAF-like superfamily protein [TAIR10] CDS gene_syn F19P19.26, F19P19_26 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product TRAF-like superfamily protein note TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2). protein_id AT1G04300.4p transcript_id AT1G04300.4 protein_id AT1G04300.4p transcript_id AT1G04300.4
At1g04300	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152947,1153036-1153124,1153234-1153345,1153718-1153895	AT1G04300.1 CDS TRAF-like superfamily protein [TAIR10] CDS gene_syn F19P19.26, F19P19_26 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product TRAF-like superfamily protein note TRAF-like superfamily protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2); Has 16577 Blast hits to 11240 proteins in 949 species: Archae - 20; Bacteria - 1945; Metazoa - 5204; Fungi - 2178; Plants - 1117; Viruses - 112; Other Eukaryotes - 6001 (source: NCBI BLink). protein_id AT1G04300.1p transcript_id AT1G04300.1 protein_id AT1G04300.1p transcript_id AT1G04300.1
AT1G04300	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152947,1153036-1153324	AT1G04300.5 AT1G04300.5 CDS TRAF-like superfamily protein
At1g04300	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152971,1153036-1153124,1153234-1153345,1153718-1153895	AT1G04300.3 CDS TRAF-like superfamily protein [TAIR10] CDS gene_syn F19P19.26, F19P19_26 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product TRAF-like superfamily protein note TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2); Has 16478 Blast hits to 11071 proteins in 944 species: Archae - 20; Bacteria - 1905; Metazoa - 5111; Fungi - 2223; Plants - 1025; Viruses - 104; Other Eukaryotes - 6090 (source: NCBI BLink). protein_id AT1G04300.3p transcript_id AT1G04300.3 protein_id AT1G04300.3p transcript_id AT1G04300.3
At1g04300	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1153095	AT1G04300.2 CDS TRAF-like superfamily protein [TAIR10] CDS gene_syn F19P19.26, F19P19_26 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product TRAF-like superfamily protein note TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2); Has 15857 Blast hits to 10581 proteins in 945 species: Archae - 20; Bacteria - 1945; Metazoa - 5107; Fungi - 2063; Plants - 631; Viruses - 112; Other Eukaryotes - 5979 (source: NCBI BLink). protein_id AT1G04300.2p transcript_id AT1G04300.2 protein_id AT1G04300.2p transcript_id AT1G04300.2
At1g04310	chr1:001155116	0.0	C/1155116-1155277,1155350-1157125	AT1G04310.1 CDS ethylene response sensor 2 [TAIR10] CDS gene_syn ERS2, ERS2 PROTEIN, F19P19.25, F19P19_25, ethylene response sensor 2 gene ERS2 function encodes an ethylene receptor related to bacterial two-component histidine kinases. go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|7569898|TAS go_function protein histidine kinase activity|GO:0004673||ISS go_function glycogen synthase kinase 3 activity|GO:0004696|15703053|TAS go_function receptor activity|GO:0004872|7569898|TAS go_function ethylene binding|GO:0051740|15703053|IDA product ethylene response sensor 2 note ethylene response sensor 2 (ERS2); FUNCTIONS IN: ethylene binding, protein histidine kinase activity, receptor activity, glycogen synthase kinase 3 activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: Signal transduction histidine kinase, hybrid-type, ethylene sensor (TAIR:AT3G23150.1); Has 9957 Blast hits to 9833 proteins in 1310 species: Archae - 33; Bacteria - 8177; Metazoa - 2; Fungi - 375; Plants - 1006; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink). protein_id AT1G04310.1p transcript_id AT1G04310.1 protein_id AT1G04310.1p transcript_id AT1G04310.1
AT1G04310	chr1:001155116	0.0	C/1155116-1155277,1155350-1157125	AT1G04310.2 AT1G04310.2 CDS ethylene response sensor 2
At1g04320	chr1:001159023	0.0	W/1159023-1159093	AT1G04320.1 [TAIR10] tRNA gene_syn 51096.TRNA-GLY-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Gly (anticodon: GCC) transcript_id AT1G04320.1
At1g04330	chr1:001161584	0.0	C/1161584-1161886	AT1G04330.1 CDS hypothetical protein [TAIR10] CDS gene_syn F19P19.24, F19P19_24 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04330.1p transcript_id AT1G04330.1 protein_id AT1G04330.1p transcript_id AT1G04330.1
At1g04340	chr1:001163345	0.0	C/1163345-1163452,1163606-1163704,1163791-1163880,1163972-1164086,1164670-1164737	AT1G04340.1 CDS HR-like lesion-inducing protein-related [TAIR10] CDS gene_syn F19P19.23, F19P19_23 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product HR-like lesion-inducing protein-related note HR-like lesion-inducing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: HR-like lesion-inducing protein-related (TAIR:AT5G43460.1); Has 168 Blast hits to 168 proteins in 33 species: Archae - 4; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G04340.1p transcript_id AT1G04340.1 protein_id AT1G04340.1p transcript_id AT1G04340.1
AT1G04340	chr1:001163345	0.0	C/1163345-1163452,1163606-1163704,1163791-1163880,1163972-1164086,1164670-1164737	AT1G04340.2 AT1G04340.2 CDS HR-like lesion-inducing protein-related
At1g04350	chr1:001165296	0.0	W/1165296-1165801,1165873-1166194,1166284-1166538	AT1G04350.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F19P19.22, F19P19_22 function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59540.1); Has 8112 Blast hits to 8080 proteins in 977 species: Archae - 0; Bacteria - 1066; Metazoa - 116; Fungi - 819; Plants - 4883; Viruses - 0; Other Eukaryotes - 1228 (source: NCBI BLink). protein_id AT1G04350.1p transcript_id AT1G04350.1 protein_id AT1G04350.1p transcript_id AT1G04350.1
At1g04360	chr1:001167507	0.0	C/1167507-1168652	AT1G04360.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F19P19.21, F19P19_21 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G43420.1); Has 9268 Blast hits to 9239 proteins in 300 species: Archae - 0; Bacteria - 0; Metazoa - 2276; Fungi - 656; Plants - 4907; Viruses - 85; Other Eukaryotes - 1344 (source: NCBI BLink). protein_id AT1G04360.1p transcript_id AT1G04360.1 protein_id AT1G04360.1p transcript_id AT1G04360.1
At1g04370	chr1:001175177	0.0	W/1175177-1175578	AT1G04370.1 CDS Ethylene-responsive element binding factor 14 [TAIR10] CDS gene_syn ATERF14, ERF14, Ethylene-responsive element binding factor 14, F19P19.19, F19P19_19 gene ERF14 function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9687012|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Ethylene-responsive element binding factor 14 note Ethylene-responsive element binding factor 14 (ERF14); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G43410.1); Has 6105 Blast hits to 5744 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6091; Viruses - 2; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G04370.1p transcript_id AT1G04370.1 protein_id AT1G04370.1p transcript_id AT1G04370.1
At1g04380	chr1:001177142	0.0	C/1177142-1177393,1177526-1177847,1177921-1178384	AT1G04380.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F19P19.18, F19P19_18 function encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G04350.1); Has 8121 Blast hits to 8082 proteins in 999 species: Archae - 0; Bacteria - 1115; Metazoa - 117; Fungi - 760; Plants - 4878; Viruses - 0; Other Eukaryotes - 1251 (source: NCBI BLink). protein_id AT1G04380.1p transcript_id AT1G04380.1 protein_id AT1G04380.1p transcript_id AT1G04380.1
AT1G04380	chr1:001177496	0.0	C/1177496-1177847,1177921-1178384	AT1G04380.2 AT1G04380.2 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
At1g04390	chr1:001179678	0.0	C/1179678-1180110,1180479-1180631,1180717-1181841,1181938-1182380,1182454-1182587,1182691-1183198,1183302-1183428,1183530-1183615	AT1G04390.1 CDS BTB/POZ domain-containing protein [TAIR10] CDS gene_syn F19P19.16, F19P19_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product BTB/POZ domain-containing protein note BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); Has 143 Blast hits to 130 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G04390.1p transcript_id AT1G04390.1 protein_id AT1G04390.1p transcript_id AT1G04390.1
At1g04400	chr1:001185719	0.0	C/1185719-1186306,1186452-1187164,1187260-1187484,1187589-1187901	AT1G04400.1 CDS cryptochrome 2 [TAIR10] CDS gene_syn AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA, PHH1, cryptochrome 2 gene CRY2 function Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus. go_component vacuole|GO:0005773|15539469|IDA go_component nucleus|GO:0005634|10476076|IDA go_process chromatin remodeling|GO:0006338|17470059|IMP go_process response to water deprivation|GO:0009414|16093319|IGI go_process response to blue light|GO:0009637|9565033|IMP go_process phototropism|GO:0009638|9565033|IGI go_process regulation of flower development|GO:0009909|17259260|IDA go_process positive regulation of flower development|GO:0009911|17259260|IMP go_process regulation of meristem growth|GO:0010075|18424613|IGI go_process stomatal movement|GO:0010118|16093319|IGI go_process circadian regulation of calcium ion oscillation|GO:0010617|17982000|IMP go_function blue light photoreceptor activity|GO:0009882|11493548|ISS go_function protein homodimerization activity|GO:0042803|15805487|IPI product cryptochrome 2 note cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink). protein_id AT1G04400.1p transcript_id AT1G04400.1 protein_id AT1G04400.1p transcript_id AT1G04400.1
At1g04400	chr1:001185719	0.0	C/1185719-1186306,1186452-1187164,1187260-1187484,1187589-1187901	AT1G04400.2 CDS cryptochrome 2 [TAIR10] CDS gene_syn AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA, PHH1, cryptochrome 2 gene CRY2 function Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus. go_component vacuole|GO:0005773|15539469|IDA go_component nucleus|GO:0005634|10476076|IDA go_process chromatin remodeling|GO:0006338|17470059|IMP go_process response to water deprivation|GO:0009414|16093319|IGI go_process response to blue light|GO:0009637|9565033|IMP go_process phototropism|GO:0009638|9565033|IGI go_process regulation of flower development|GO:0009909|17259260|IDA go_process positive regulation of flower development|GO:0009911|17259260|IMP go_process regulation of meristem growth|GO:0010075|18424613|IGI go_process stomatal movement|GO:0010118|16093319|IGI go_process circadian regulation of calcium ion oscillation|GO:0010617|17982000|IMP go_function blue light photoreceptor activity|GO:0009882|11493548|ISS go_function protein homodimerization activity|GO:0042803|15805487|IPI product cryptochrome 2 note cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink). protein_id AT1G04400.2p transcript_id AT1G04400.2 protein_id AT1G04400.2p transcript_id AT1G04400.2
At1g04410	chr1:001189418	0.0	C/1189418-1189512,1189601-1189712,1189805-1189940,1190030-1190307,1190465-1190640,1190747-1190905,1191225-1191267	AT1G04410.1 CDS Lactate/malate dehydrogenase family protein [TAIR10] CDS gene_syn F19P19.13, F19P19_13 go_component nucleus|GO:0005634|14617066|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component membrane|GO:0016020|17432890|IDA go_component apoplast|GO:0048046|18538804|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function malate dehydrogenase activity|GO:0016615||IEA go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA go_function L-malate dehydrogenase activity|GO:0030060||IEA go_process response to zinc ion|GO:0010043|19880396|IEP go_function malate dehydrogenase activity|GO:0016615||ISS product Lactate/malate dehydrogenase family protein note Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G43330.1); Has 11998 Blast hits to 11997 proteins in 3022 species: Archae - 169; Bacteria - 7171; Metazoa - 1456; Fungi - 287; Plants - 683; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink). protein_id AT1G04410.1p transcript_id AT1G04410.1 protein_id AT1G04410.1p transcript_id AT1G04410.1
At1g04420	chr1:001191634	0.0	W/1191634-1191858,1191939-1192034,1192214-1192297,1192413-1192573,1192718-1192835,1192925-1193060,1193143-1193321,1193460-1193699	AT1G04420.1 CDS NAD(P)-linked oxidoreductase superfamily protein [TAIR10] CDS gene_syn F19P19.12, F19P19_12 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function aldo-keto reductase activity|GO:0004033||ISS product NAD(P)-linked oxidoreductase superfamily protein note NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: potassium channel beta subunit 1 (TAIR:AT1G04690.1); Has 28623 Blast hits to 28597 proteins in 2530 species: Archae - 619; Bacteria - 18927; Metazoa - 1497; Fungi - 1929; Plants - 977; Viruses - 0; Other Eukaryotes - 4674 (source: NCBI BLink). protein_id AT1G04420.1p transcript_id AT1G04420.1 protein_id AT1G04420.1p transcript_id AT1G04420.1
At1g04425	chr1:001194187	0.0	W/1194187-1194277,1195439-1195551,1196637-1196889	AT1G04425.1 [TAIR10] ncRNA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G04425.1
At1g04430	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F19P19.11, F19P19_11 go_component plasma membrane|GO:0005886|17151019|IDA go_component Golgi apparatus|GO:0005794|16618929|IDA go_process biological_process|GO:0008150||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G23300.1); Has 1231 Blast hits to 1208 proteins in 77 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 0; Plants - 1110; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G04430.1p transcript_id AT1G04430.1 protein_id AT1G04430.1p transcript_id AT1G04430.1
At1g04430	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.2 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F19P19.11, F19P19_11 go_component plasma membrane|GO:0005886|17151019|IDA go_component Golgi apparatus|GO:0005794|16618929|IDA go_process biological_process|GO:0008150||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G23300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G04430.2p transcript_id AT1G04430.2 protein_id AT1G04430.2p transcript_id AT1G04430.2
AT1G04430	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.3 AT1G04430.3 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
At1g04440	chr1:001202815	0.0	W/1202815-1202890,1202976-1203016,1203104-1203173,1203272-1203420,1203495-1203590,1203698-1203768,1203844-1203905,1204044-1204107,1204182-1204266,1204393-1204519,1204619-1204704,1204795-1204858,1205115-1205251,1205386-1205664	AT1G04440.1 CDS casein kinase like 13 [TAIR10] CDS gene_syn CKL13, F19P19.10, F19P19_10, casein kinase like 13 gene CKL13 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product casein kinase like 13 note casein kinase like 13 (CKL13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 8 (TAIR:AT5G43320.1); Has 52915 Blast hits to 51269 proteins in 2162 species: Archae - 36; Bacteria - 8821; Metazoa - 19243; Fungi - 5604; Plants - 8347; Viruses - 301; Other Eukaryotes - 10563 (source: NCBI BLink). protein_id AT1G04440.1p transcript_id AT1G04440.1 protein_id AT1G04440.1p transcript_id AT1G04440.1
AT1G04445	chr1:001207338	0.0	W/1207338-1207862	AT1G04445.2 AT1G04445.2 CDS C2H2-like zinc finger protein
At1g04445	chr1:001207344	0.0	W/1207344-1207862	AT1G04445.1 CDS C2H2-like zinc finger protein [TAIR10] CDS go_component intracellular|GO:0005622||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-like zinc finger protein note C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04445.1p transcript_id AT1G04445.1 protein_id AT1G04445.1p transcript_id AT1G04445.1
At1g04450	chr1:001209006	0.0	W/1209006-1209060,1209159-1209259,1209347-1209853	AT1G04450.1 CDS ROP-interactive CRIB motif-containing protein 3 [TAIR10] CDS gene_syn F19P19.8, F19P19_8, RIC3, ROP-interactive CRIB motif-containing protein 3 gene RIC3 function Encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. The protein most similar to RIC1 (family subgroup III). Gene is expressed predominantly in inflorescence and flower tissue. Interacts with ROP1 to modulate calcium ion influxes required to generate tip-focused calcium gradients.It go_component cytoplasm|GO:0005737|11752391|IDA go_component cytoplasm|GO:0005737|15824136|IDA go_process elevation of cytosolic calcium ion concentration|GO:0007204|15824136|IMP go_process pollen tube growth|GO:0009860|11752391|IMP go_process regulation of exocytosis|GO:0017157|18591430|IDA go_process regulation of actin filament depolymerization|GO:0030834|15824136|IMP go_process regulation of calcium-mediated signaling|GO:0050848|15824136|IMP go_process positive regulation of calcium-mediated signaling|GO:0050850|15824136|IMP go_process establishment of vesicle localization|GO:0051650|18591430|IDA go_function protein binding|GO:0005515|15824136|IPI product ROP-interactive CRIB motif-containing protein 3 note ROP-interactive CRIB motif-containing protein 3 (RIC3); FUNCTIONS IN: protein binding; INVOLVED IN: in 7 processes; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: ROP-interactive CRIB motif-containing protein 1 (TAIR:AT2G33460.1); Has 189 Blast hits to 189 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G04450.1p transcript_id AT1G04450.1 protein_id AT1G04450.1p transcript_id AT1G04450.1
AT1G04455	chr1:001210269	0.0	W/1210269-1210622	AT1G04455.1 AT1G04455.1 CDS hypothetical protein
At1g04457	chr1:001210319	0.0	C/1210319-1210549	AT1G04457.1 [TAIR10] pseudogene
At1g04470	chr1:001211177	0.0	C/1211177-1212144,1212222-1212408,1212486-1213158,1213230-1213897,1213980-1214591	AT1G04470.1 CDS hypothetical protein (DUF810) [TAIR10] CDS gene_syn F19P19.7, F19P19_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF810) note CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT2G33420.1); Has 201 Blast hits to 187 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 4; Plants - 177; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). protein_id AT1G04470.1p transcript_id AT1G04470.1 protein_id AT1G04470.1p transcript_id AT1G04470.1
At1g04480	chr1:001216110	0.0	W/1216110-1216122,1216244-1216528,1217133-1217257	AT1G04480.1 CDS Ribosomal protein L14p/L23e family protein [TAIR10] CDS gene_syn F19P19.5, F19P19_5 go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L14p/L23e family protein note Ribosomal protein L14p/L23e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT3G04400.1); Has 9301 Blast hits to 9300 proteins in 3178 species: Archae - 321; Bacteria - 5427; Metazoa - 383; Fungi - 266; Plants - 815; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink). protein_id AT1G04480.1p transcript_id AT1G04480.1 protein_id AT1G04480.1p transcript_id AT1G04480.1
At1g04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.1 CDS hypothetical protein (DUF3527) [TAIR10] CDS gene_syn F19P19.4, F19P19_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF3527) note Protein of unknown function (DUF3527); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2); Has 121 Blast hits to 119 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04490.1p transcript_id AT1G04490.1 protein_id AT1G04490.1p transcript_id AT1G04490.1
At1g04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.2 CDS hypothetical protein (DUF3527) [TAIR10] CDS gene_syn F19P19.4, F19P19_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF3527) note Protein of unknown function (DUF3527); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2); Has 121 Blast hits to 119 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04490.2p transcript_id AT1G04490.2 protein_id AT1G04490.2p transcript_id AT1G04490.2
AT1G04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.3 AT1G04490.3 CDS hypothetical protein (DUF3527)
AT1G04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.5 AT1G04490.5 CDS hypothetical protein (DUF3527)
AT1G04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.6 AT1G04490.6 CDS hypothetical protein (DUF3527)
AT1G04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.7 AT1G04490.7 CDS hypothetical protein (DUF3527)
AT1G04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.8 AT1G04490.8 CDS hypothetical protein (DUF3527)
AT1G04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.9 AT1G04490.9 CDS hypothetical protein (DUF3527)
AT1G04490	chr1:001218240	0.0	C/1218240-1219325	AT1G04490.4 AT1G04490.4 CDS hypothetical protein (DUF3527)
AT1G04500	chr1:001221757	0.0	C/1221757-1221864,1221956-1222081,1222174-1222365,1222489-1223181,1223272-1223286	AT1G04500.3 AT1G04500.3 CDS CCT motif family protein
At1g04500	chr1:001221757	0.0	C/1221757-1221864,1221956-1222081,1222174-1222365,1222489-1223181,1224194-1224235	AT1G04500.1 CDS CCT motif family protein [TAIR10] CDS gene_syn F19P19.3, F19P19_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product CCT motif family protein note CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2); Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 2; Plants - 1654; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). protein_id AT1G04500.1p transcript_id AT1G04500.1 protein_id AT1G04500.1p transcript_id AT1G04500.1
AT1G04500	chr1:001221757	0.0	C/1221757-1221864,1221956-1222081,1222174-1222365,1222489-1223181,1224194-1224235	AT1G04500.4 AT1G04500.4 CDS CCT motif family protein
AT1G04500	chr1:001221855	0.0	C/1221855-1221864,1221956-1222365,1222489-1223181,1224194-1224235	AT1G04500.2 AT1G04500.2 CDS CCT motif family protein
At1g04501	chr1:001224552	0.0	W/1224552-1224680	AT1G04501.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G04501.1p transcript_id AT1G04501.1 protein_id AT1G04501.1p transcript_id AT1G04501.1
At1g04510	chr1:001226749	0.0	W/1226749-1226761,1226852-1226937,1227087-1227158,1227247-1227309,1227580-1227666,1227816-1227957,1228046-1228167,1228331-1228447,1228706-1228801,1228897-1228956,1229054-1229128,1229233-1229337,1229504-1229623,1229717-1229794,1229893-1229977,1230065-1230116,1230303-1230373,1230465-1230592	AT1G04510.1 CDS MOS4-associated complex 3A [TAIR10] CDS gene_syn F19P19.2, F19P19_2, MAC3A, MOS4-associated complex 3A gene MAC3A function Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. go_component nucleolus|GO:0005730|15496452|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function ubiquitin-protein ligase activity|GO:0004842||IEA go_component nucleus|GO:0005634|19629177|IDA go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process defense response to bacterium|GO:0042742|19629177|IGI go_function nucleotide binding|GO:0000166||ISS product MOS4-associated complex 3A note MOS4-associated complex 3A (MAC3A); FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: response to cadmium ion, defense response to bacterium; LOCATED IN: nucleolus, nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), U box domain (InterPro:IPR003613), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: MOS4-associated complex 3B (TAIR:AT2G33340.2); Has 53700 Blast hits to 26315 proteins in 787 species: Archae - 70; Bacteria - 7824; Metazoa - 20612; Fungi - 11571; Plants - 6404; Viruses - 0; Other Eukaryotes - 7219 (source: NCBI BLink). protein_id AT1G04510.1p transcript_id AT1G04510.1 protein_id AT1G04510.1p transcript_id AT1G04510.1
At1g04510	chr1:001226749	0.0	W/1226749-1226761,1226852-1226937,1227087-1227158,1227247-1227309,1227580-1227666,1227816-1227957,1228046-1228167,1228331-1228447,1228706-1228801,1228897-1228956,1229054-1229128,1229233-1229337,1229504-1229623,1229717-1229794,1229893-1229977,1230065-1230116,1230303-1230379,1230471-1230592	AT1G04510.2 CDS MOS4-associated complex 3A [TAIR10] CDS gene_syn F19P19.2, F19P19_2, MAC3A, MOS4-associated complex 3A gene MAC3A function Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. go_component nucleolus|GO:0005730|15496452|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function ubiquitin-protein ligase activity|GO:0004842||IEA go_component nucleus|GO:0005634|19629177|IDA go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process defense response to bacterium|GO:0042742|19629177|IGI go_function nucleotide binding|GO:0000166||ISS product MOS4-associated complex 3A note MOS4-associated complex 3A (MAC3A); FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: response to cadmium ion, defense response to bacterium; LOCATED IN: nucleolus, nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), U box domain (InterPro:IPR003613), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: MOS4-associated complex 3B (TAIR:AT2G33340.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G04510.2p transcript_id AT1G04510.2 protein_id AT1G04510.2p transcript_id AT1G04510.2
At1g04520	chr1:001231852	0.0	W/1231852-1232272,1232605-1232991,1233493-1233600,1233780-1233787	AT1G04520.1 CDS plasmodesmata-located protein 2 [TAIR10] CDS gene_syn F19P19.1, F19P19_1, PDLP2, plasmodesmata-located protein 2 gene PDLP2 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component plasmodesma|GO:0009506|18215111|IDA go_process plasmodesmata-mediated intercellular transport|GO:0010497|18215111|IGI go_function molecular_function|GO:0003674||ND product plasmodesmata-located protein 2 note plasmodesmata-located protein 2 (PDLP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport; LOCATED IN: plasmodesma; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 3 (TAIR:AT2G33330.1); Has 1091 Blast hits to 1028 proteins in 65 species: Archae - 0; Bacteria - 64; Metazoa - 5; Fungi - 13; Plants - 1007; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G04520.1p transcript_id AT1G04520.1 protein_id AT1G04520.1p transcript_id AT1G04520.1
At1g04530	chr1:001234456	0.0	C/1234456-1234504,1234604-1234758,1234994-1235108,1235185-1235357,1235455-1235895	AT1G04530.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T1G11.22, T1G11_22 go_function binding|GO:0005488||IEA product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G17940.1); Has 713 Blast hits to 362 proteins in 65 species: Archae - 10; Bacteria - 98; Metazoa - 37; Fungi - 8; Plants - 512; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G04530.1p transcript_id AT1G04530.1 protein_id AT1G04530.1p transcript_id AT1G04530.1
At1g04540	chr1:001237256	0.0	W/1237256-1239061	AT1G04540.1 CDS Calcium-dependent lipid-binding (CaLB domain) family protein [TAIR10] CDS gene_syn T1G11.21, T1G11_21 go_component membrane|GO:0016020|17432890|IDA go_process biological_process|GO:0008150||ND product Calcium-dependent lipid-binding (CaLB domain) family protein note Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). protein_id AT1G04540.1p transcript_id AT1G04540.1 protein_id AT1G04540.1p transcript_id AT1G04540.1
At1g04550	chr1:001240582	0.0	W/1240582-1240784,1241057-1241343,1241425-1241542,1241616-1241677,1241761-1241810	AT1G04550.2 CDS AUX/IAA transcriptional regulator family protein [TAIR10] CDS gene_syn BDL, BODENLOS, IAA12, T1G11.20, T1G11_20, indole-3-acetic acid inducible 12 gene IAA12 function IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem go_component nucleus|GO:0005634||IEA go_process response to auxin stimulus|GO:0009733|10068632|IGI go_process embryonic pattern specification|GO:0009880|10068632|IMP go_process xylem and phloem pattern formation|GO:0010051|18258861|IMP go_process root development|GO:0048364|18258861|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription repressor activity|GO:0016564|18258861|IDA product AUX/IAA transcriptional regulator family protein note indole-3-acetic acid inducible 12 (IAA12); FUNCTIONS IN: transcription repressor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.3); Has 2001 Blast hits to 2000 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2000; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G04550.2p transcript_id AT1G04550.2 protein_id AT1G04550.2p transcript_id AT1G04550.2
At1g04550	chr1:001240582	0.0	W/1240582-1240784,1241057-1241375	AT1G04550.1 CDS AUX/IAA transcriptional regulator family protein [TAIR10] CDS gene_syn BDL, BODENLOS, IAA12, T1G11.20, T1G11_20, indole-3-acetic acid inducible 12 gene IAA12 function IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem go_component nucleus|GO:0005634||IEA go_process response to auxin stimulus|GO:0009733|10068632|IGI go_process embryonic pattern specification|GO:0009880|10068632|IMP go_process xylem and phloem pattern formation|GO:0010051|18258861|IMP go_process root development|GO:0048364|18258861|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription repressor activity|GO:0016564|18258861|IDA product AUX/IAA transcriptional regulator family protein note indole-3-acetic acid inducible 12 (IAA12); FUNCTIONS IN: transcription repressor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.3); Has 1087 Blast hits to 1087 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1087; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04550.1p transcript_id AT1G04550.1 protein_id AT1G04550.1p transcript_id AT1G04550.1
At1g04555	chr1:001242743	0.0	W/1242743-1242896,1243442-1243512,1243608-1243743,1243852-1243949	AT1G04555.1 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33380.1); Has 84 Blast hits to 83 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04555.1p transcript_id AT1G04555.1 protein_id AT1G04555.1p transcript_id AT1G04555.1
At1g04560	chr1:001245070	0.0	W/1245070-1245199,1245292-1245469,1245636-1245888	AT1G04560.1 CDS AWPM-19-like family protein [TAIR10] CDS gene_syn T1G11.19, T1G11_19 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product AWPM-19-like family protein note AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 177 Blast hits to 177 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04560.1p transcript_id AT1G04560.1 protein_id AT1G04560.1p transcript_id AT1G04560.1
AT1G04570	chr1:001246859	0.0	C/1246859-1247992,1248117-1248167	AT1G04570.2 AT1G04570.2 CDS Major facilitator superfamily protein
At1g04570	chr1:001246859	0.0	C/1246859-1248003,1248117-1248600	AT1G04570.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn T1G11.18, T1G11_18 go_component chloroplast|GO:0009507||IEA go_component membrane|GO:0016020||ISS go_process transport|GO:0006810||ISS go_function transporter activity|GO:0005215||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Biopterin transport-related protein BT1 (InterPro:IPR004324), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G33280.1); Has 816 Blast hits to 814 proteins in 271 species: Archae - 6; Bacteria - 387; Metazoa - 0; Fungi - 18; Plants - 232; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink). protein_id AT1G04570.1p transcript_id AT1G04570.1 protein_id AT1G04570.1p transcript_id AT1G04570.1
At1g04580	chr1:001252212	0.0	C/1252212-1252441,1252542-1252731,1252827-1252925,1253012-1253107,1253182-1254147,1254220-1254438,1254541-1254750,1254866-1255125,1255277-1256884,1257375-1257510	AT1G04580.1 CDS aldehyde oxidase 4 [TAIR10] CDS gene_syn AAO4, ALDEHYDE OXIDASE 2, ALDEHYDE OXIDASE 4, AO4, ATAO-4, ATAO2, T1G11.17, T1G11_17, aldehyde oxidase 4, arabdopsis thaliana aldehyde oxidase 4 gene AO4 function Encodes aldehyde oxidase AAO4 preferentially expressed in developing seeds. go_component cytosol|GO:0005829|19297586|TAS go_process abscisic acid biosynthetic process|GO:0009688|10972874|TAS go_process glucosinolate metabolic process|GO:0019760|19297586|IMP go_function aldehyde oxidase activity|GO:0004031||ISS go_function benzaldehyde dehydrogenase (NAD+) activity|GO:0018479|19297586|IDA go_function aryl-aldehyde oxidase activity|GO:0018488|19297586|IDA product aldehyde oxidase 4 note aldehyde oxidase 4 (AO4); CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: abscisic aldehyde oxidase 3 (TAIR:AT2G27150.2); Has 17858 Blast hits to 17128 proteins in 1274 species: Archae - 410; Bacteria - 10596; Metazoa - 1017; Fungi - 119; Plants - 281; Viruses - 0; Other Eukaryotes - 5435 (source: NCBI BLink). protein_id AT1G04580.1p transcript_id AT1G04580.1 protein_id AT1G04580.1p transcript_id AT1G04580.1
At1g04590	chr1:001258760	0.0	C/1258760-1258899,1259027-1259219,1259358-1259570,1259728-1259871,1260012-1260125,1260525-1260626,1260746-1260806,1260942-1260978,1261270-1261411	AT1G04590.1 CDS PPR containing-like protein [TAIR10] CDS gene_syn T1G11.16, T1G11_16 go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G04590.1p transcript_id AT1G04590.1 protein_id AT1G04590.1p transcript_id AT1G04590.1
At1g04590	chr1:001258760	0.0	C/1258760-1258899,1259027-1259228,1259358-1259570,1259728-1259871,1260012-1260125,1260525-1260626,1260746-1260806,1260942-1260978,1261270-1261411	AT1G04590.2 CDS PPR containing-like protein [TAIR10] CDS gene_syn T1G11.16, T1G11_16 go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G04590.2p transcript_id AT1G04590.2 protein_id AT1G04590.2p transcript_id AT1G04590.2
At1g04600	chr1:001262123	0.0	W/1262123-1262125,1262556-1262681,1262897-1263040,1263175-1263320,1263412-1263568,1263681-1263739,1263833-1263992,1264094-1264243,1264310-1264446,1264533-1264679,1264760-1264861,1265159-1265216,1265291-1265392,1265492-1265529,1265614-1265740,1265823-1265993,1266077-1266208,1266314-1266423,1266552-1266612,1266815-1266992,1267076-1267281,1267395-1267514,1267771-1267869,1267996-1268283,1268406-1268558,1268673-1268822,1268940-1269104,1269192-1269331,1269452-1269566,1269645-1269665,1269771-1269848,1269937-1270107,1270272-1270424,1270572-1270748,1270841-1271131,1271199-1271269,1271367-1271466,1271543-1271599,1271678-1271734,1271941-1272021,1272101-1272177,1272262-1272376	AT1G04600.1 CDS myosin XI A [TAIR10] CDS gene_syn ATXIA, T1G11.15, T1G11_15, XIA, myosin XI A gene XIA function member of Myosin-like proteins go_component myosin complex|GO:0016459||IEA go_component myosin complex|GO:0016459||ISS go_process actin filament-based movement|GO:0030048|11516337|TAS go_function motor activity|GO:0003774|11516337|ISS go_function motor activity|GO:0003774||ISS product myosin XI A note myosin XI A (XIA); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Prefoldin (InterPro:IPR009053), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI D (TAIR:AT2G33240.1); Has 140144 Blast hits to 79260 proteins in 3527 species: Archae - 2295; Bacteria - 25176; Metazoa - 58445; Fungi - 12073; Plants - 6566; Viruses - 744; Other Eukaryotes - 34845 (source: NCBI BLink). protein_id AT1G04600.1p transcript_id AT1G04600.1 protein_id AT1G04600.1p transcript_id AT1G04600.1
At1g04610	chr1:001279524	0.0	W/1279524-1280237,1280400-1280771,1281104-1281331	AT1G04610.1 CDS YUCCA 3 [TAIR10] CDS gene_syn T1G11.14, T1G11_14, YUC3, YUCCA 3 gene YUC3 go_function flavin-containing monooxygenase activity|GO:0004499||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function NADP or NADPH binding|GO:0050661||IEA go_process auxin biosynthetic process|GO:0009851|11209081|IMP product YUCCA 3 note YUCCA 3 (YUC3); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: YUCCA 7 (TAIR:AT2G33230.1); Has 9657 Blast hits to 9637 proteins in 1196 species: Archae - 33; Bacteria - 4899; Metazoa - 784; Fungi - 1494; Plants - 670; Viruses - 0; Other Eukaryotes - 1777 (source: NCBI BLink). protein_id AT1G04610.1p transcript_id AT1G04610.1 protein_id AT1G04610.1p transcript_id AT1G04610.1
At1g04620	chr1:001282869	0.0	C/1282869-1282959,1283068-1283162,1283258-1283322,1283483-1283540,1283639-1283708,1283794-1283873,1283969-1283996,1284101-1284162,1284243-1284278,1284356-1284453,1284628-1284690,1284790-1284841,1284926-1285004,1285139-1285180,1285285-1285369,1285516-1285627,1285719-1285803,1285896-1286001,1286411-1286492	AT1G04620.1 CDS coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family [TAIR10] CDS gene_syn T1G11.13, T1G11_13 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function coenzyme F420 hydrogenase activity|GO:0050454||ISS product coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family note coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family; FUNCTIONS IN: coenzyme F420 hydrogenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal (InterPro:IPR007525), Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal (InterPro:IPR007516); Has 499 Blast hits to 498 proteins in 165 species: Archae - 202; Bacteria - 188; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT1G04620.1p transcript_id AT1G04620.1 protein_id AT1G04620.1p transcript_id AT1G04620.1
At1g04625	chr1:001287831	0.0	C/1287831-1287920,1288232-1288788,1289694-1289820	AT1G04625.1 CDS Polynucleotidyl transferase, ribonuclease H-like superfamily protein [TAIR10] CDS go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Polynucleotidyl transferase, ribonuclease H-like superfamily protein note Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G46460.1); Has 296 Blast hits to 296 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G04625.1p transcript_id AT1G04625.1 protein_id AT1G04625.1p transcript_id AT1G04625.1
At1g04630	chr1:001289921	0.0	C/1289921-1290065,1290152-1290223,1290772-1290986	AT1G04630.1 CDS GRIM-19 protein [TAIR10] CDS gene_syn MEE4, T1G11.12, T1G11_12, maternal effect embryo arrest 4 gene MEE4 go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrial membrane|GO:0031966|16407270|IDA go_component respiratory chain complex I|GO:0045271|16407270|IDA go_component respiratory chain complex I|GO:0045271|18189341|IDA go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process photorespiration|GO:0009853|16407270|TAS go_function molecular_function|GO:0003674||ND product GRIM-19 protein note maternal effect embryo arrest 4 (MEE4); CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: GRIM-19 protein (TAIR:AT2G33220.1); Has 332 Blast hits to 332 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 83; Plants - 65; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). protein_id AT1G04630.1p transcript_id AT1G04630.1 protein_id AT1G04630.1p transcript_id AT1G04630.1
At1g04635	chr1:001291350	0.0	W/1291350-1291805	AT1G04635.1 CDS ribonuclease P family protein / Rpp14 family protein [TAIR10] CDS gene_syn EMB1687, EMBRYO DEFECTIVE 1687 gene EMB1687 go_component vacuole|GO:0005773|15539469|IDA go_function ribonuclease activity|GO:0004540||IEA go_process tRNA processing|GO:0008033||ISS go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function ribonuclease P activity|GO:0004526||ISS product ribonuclease P family protein / Rpp14 family protein note EMBRYO DEFECTIVE 1687 (EMB1687); FUNCTIONS IN: ribonuclease activity, ribonuclease P activity; INVOLVED IN: tRNA processing, embryo development ending in seed dormancy; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Ribonuclease P-related (InterPro:IPR002759); Has 266 Blast hits to 266 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 108; Plants - 56; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G04635.1p transcript_id AT1G04635.1 protein_id AT1G04635.1p transcript_id AT1G04635.1
At1g04640	chr1:001292541	0.0	W/1292541-1293248	AT1G04640.1 CDS lipoyltransferase 2 [TAIR10] CDS gene_syn LIP2, lipoyltransferase 2 gene LIP2 function Lipoyltransferase, located in mitochondria but not found in chloroplasts go_component mitochondrion|GO:0005739|11427685|IDA go_process lipoic acid metabolic process|GO:0000273|11427685|IGI go_function lipoyltransferase activity|GO:0017118|11427685|IGI product lipoyltransferase 2 note lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1); Has 5700 Blast hits to 5697 proteins in 1675 species: Archae - 17; Bacteria - 3180; Metazoa - 102; Fungi - 137; Plants - 98; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink). protein_id AT1G04640.1p transcript_id AT1G04640.1 protein_id AT1G04640.1p transcript_id AT1G04640.1
At1g04640	chr1:001292541	0.0	W/1292541-1293248	AT1G04640.2 CDS lipoyltransferase 2 [TAIR10] CDS gene_syn LIP2, lipoyltransferase 2 gene LIP2 function Lipoyltransferase, located in mitochondria but not found in chloroplasts go_component mitochondrion|GO:0005739|11427685|IDA go_process lipoic acid metabolic process|GO:0000273|11427685|IGI go_function lipoyltransferase activity|GO:0017118|11427685|IGI product lipoyltransferase 2 note lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G04640.2p transcript_id AT1G04640.2 protein_id AT1G04640.2p transcript_id AT1G04640.2
At1g04645	chr1:001293853	0.0	C/1293853-1294239	AT1G04645.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT4G24974.1); Has 360 Blast hits to 349 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04645.1p transcript_id AT1G04645.1 protein_id AT1G04645.1p transcript_id AT1G04645.1
AT1G04650	chr1:001294893	0.0	C/1294893-1295775,1295941-1297535,1297706-1297855,1297945-1298004	AT1G04650.2 AT1G04650.2 CDS holliday junction resolvase, putative
At1g04650	chr1:001294893	0.0	C/1294893-1295775,1295941-1297535,1297706-1297855,1297945-1298034,1298122-1298256,1298471-1298563,1298856-1298903	AT1G04650.1 CDS holliday junction resolvase, putative [TAIR10] CDS gene_syn T1G11.9, T1G11_9 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G04650.1p transcript_id AT1G04650.1 protein_id AT1G04650.1p transcript_id AT1G04650.1
At1g04660	chr1:001300668	0.0	C/1300668-1301306	AT1G04660.1 CDS glycine-rich protein [TAIR10] CDS gene_syn T1G11.8, T1G11_8 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product glycine-rich protein note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 360 Blast hits to 349 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04660.1p transcript_id AT1G04660.1 protein_id AT1G04660.1p transcript_id AT1G04660.1
At1g04670	chr1:001301985	0.0	W/1301985-1302089,1302161-1302286,1302383-1302532	AT1G04670.1 CDS hypothetical protein [TAIR10] CDS gene_syn T1G11.23, T1G11_23 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 2; Bacteria - 5; Metazoa - 1; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04670.1p transcript_id AT1G04670.1 protein_id AT1G04670.1p transcript_id AT1G04670.1
At1g04680	chr1:001304052	0.0	C/1304052-1304279,1304373-1304511,1304621-1304724,1304823-1305465,1306792-1306872,1307680-1307780	AT1G04680.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn T1G11.7, T1G11_7 go_component membrane|GO:0016020|17432890|IDA go_process biological_process|GO:0008150||ND go_function lyase activity|GO:0016829||ISS go_function pectate lyase activity|GO:0030570||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13710.1); Has 1635 Blast hits to 1625 proteins in 268 species: Archae - 0; Bacteria - 682; Metazoa - 0; Fungi - 239; Plants - 706; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G04680.1p transcript_id AT1G04680.1 protein_id AT1G04680.1p transcript_id AT1G04680.1
At1g04684	chr1:001310430	0.0	C/1310430-1310579	AT1G04684.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G04684.1p transcript_id AT1G04684.1 protein_id AT1G04684.1p transcript_id AT1G04684.1
At1g04690	chr1:001313662	0.0	W/1313662-1314029,1314464-1314659,1314780-1314923,1315041-1315205,1315307-1315420	AT1G04690.1 CDS potassium channel beta subunit 1 [TAIR10] CDS gene_syn K+ CHANNEL BETA SUBUNIT PROTEIN, KAB1, KV-BETA1, POTASSIUM CHANNEL BETA SUBUNIT HOMOLOG, T1G11.6, T1G11_6, potassium channel beta subunit 1 gene KAB1 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component membrane|GO:0016020|17432890|IDA go_process potassium ion transport|GO:0006813||IEA go_process transmembrane transport|GO:0055085||IEA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_process potassium ion transport|GO:0006813||ISS go_function potassium channel activity|GO:0005267||ISS product potassium channel beta subunit 1 note potassium channel beta subunit 1 (KAB1); FUNCTIONS IN: oxidoreductase activity, potassium channel activity; INVOLVED IN: oxidation reduction, potassium ion transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Potassium channel, voltage-dependent, beta subunit, KCNAB-related (InterPro:IPR005399); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60690.1); Has 29181 Blast hits to 29146 proteins in 2493 species: Archae - 642; Bacteria - 19972; Metazoa - 899; Fungi - 1968; Plants - 978; Viruses - 0; Other Eukaryotes - 4722 (source: NCBI BLink). protein_id AT1G04690.1p transcript_id AT1G04690.1 protein_id AT1G04690.1p transcript_id AT1G04690.1
At1g04700	chr1:001316919	0.0	W/1316919-1318787,1318867-1319187,1319285-1319524,1319605-1319768,1319852-1319999,1320088-1320210,1320286-1320373,1320478-1320653	AT1G04700.1 CDS PB1 domain-containing protein tyrosine kinase [TAIR10] CDS gene_syn T1G11.5, T1G11_5 go_process protein amino acid phosphorylation|GO:0006468||IEA go_component cytosol|GO:0005829|18433157|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function protein kinase activity|GO:0004672||ISS go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS product PB1 domain-containing protein tyrosine kinase note PB1 domain-containing protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT3G24715.1); Has 117644 Blast hits to 116217 proteins in 4946 species: Archae - 115; Bacteria - 12372; Metazoa - 45570; Fungi - 9947; Plants - 31841; Viruses - 450; Other Eukaryotes - 17349 (source: NCBI BLink). protein_id AT1G04700.1p transcript_id AT1G04700.1 protein_id AT1G04700.1p transcript_id AT1G04700.1
AT1G04700	chr1:001316919	0.0	W/1316919-1318787,1318867-1319187,1319285-1319524,1319605-1319768,1319852-1319999,1320088-1320210,1320286-1320373,1320478-1320653	AT1G04700.2 AT1G04700.2 CDS PB1 domain-containing protein tyrosine kinase
AT1G04700	chr1:001316919	0.0	W/1316919-1318787,1318867-1319187,1319285-1319524,1319605-1319768,1319852-1320026	AT1G04700.3 AT1G04700.3 CDS PB1 domain-containing protein tyrosine kinase
At1g04710	chr1:001321941	0.0	W/1321941-1322018,1322257-1322321,1322407-1322491,1322573-1322699,1322788-1322886,1322967-1323034,1323132-1323239,1323323-1323400,1323506-1323638,1323732-1323828,1323905-1324028,1324134-1324242,1324308-1324391,1324480-1324556	AT1G04710.1 CDS peroxisomal 3-ketoacyl-CoA thiolase 4 [TAIR10] CDS gene_syn 3-KETO-ACYL-COA THIOLASE 1, KAT1, PKT4, T1G11.4, T1G11_4, peroxisomal 3-ketoacyl-CoA thiolase 4 gene PKT4 function EC2.3.1.16 thiolase. go_component vacuole|GO:0005773|15539469|IDA go_component peroxisome|GO:0005777|17951448|IDA go_process metabolic process|GO:0008152||IEA go_process fatty acid oxidation|GO:0019395||IEA go_process catechol catabolic process, ortho-cleavage|GO:0019615||IEA go_process protocatechuate catabolic process, ortho-cleavage|GO:0019618||IEA go_function catalytic activity|GO:0003824||IEA go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_function acetyl-CoA C-acyltransferase activity|GO:0003988||ISS product peroxisomal 3-ketoacyl-CoA thiolase 4 note peroxisomal 3-ketoacyl-CoA thiolase 4 (PKT4); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acetyl-CoA C-acyltransferase activity; INVOLVED IN: catechol catabolic process, ortho-cleavage, protocatechuate catabolic process, ortho-cleavage, metabolic process, fatty acid oxidation; LOCATED IN: peroxisome, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase, active site (InterPro:IPR020610), Thiolase, N-terminal (InterPro:IPR020616), Thiolase, conserved site (InterPro:IPR020613), Thiolase, C-terminal (InterPro:IPR020617), Thiolase-like, subgroup (InterPro:IPR016038), Thiolase-like (InterPro:IPR016039), Thiolase, acyl-enzyme intermediate active site (InterPro:IPR020615); BEST Arabidopsis thaliana protein match is: peroxisomal 3-ketoacyl-CoA thiolase 3 (TAIR:AT2G33150.1); Has 22406 Blast hits to 22392 proteins in 2262 species: Archae - 405; Bacteria - 14105; Metazoa - 1004; Fungi - 662; Plants - 281; Viruses - 0; Other Eukaryotes - 5949 (source: NCBI BLink). protein_id AT1G04710.1p transcript_id AT1G04710.1 protein_id AT1G04710.1p transcript_id AT1G04710.1
At1g04720	chr1:001324923	0.0	W/1324923-1324960	AT1G04720.1 [TAIR10] tRNA gene_syn 50893.TRNA-MET-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Met (anticodon: CAT) transcript_id AT1G04720.1
AT1G04730	chr1:001325385	0.0	C/1325385-1325438,1325590-1325689,1325855-1326093,1326194-1326253,1326340-1326531,1326637-1326790,1326880-1326967,1327044-1327122,1327225-1327306,1327394-1327491,1327572-1327640,1327837-1327904,1328034-1328107,1328457-1328501,1328722-1328882,1329148-1329213,1329319-1329420,1329559-1329645,1329764-1330036,1330147-1330227	AT1G04730.2 AT1G04730.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G04730	chr1:001325385	0.0	C/1325385-1325438,1325590-1325689,1325855-1326093,1326194-1326253,1326340-1326531,1326637-1326790,1326880-1326967,1327044-1327122,1327225-1327306,1327394-1327491,1327572-1327640,1327837-1327904,1328034-1328107,1328457-1328501,1328722-1328882,1329148-1329213,1329319-1329420,1329559-1329645,1329764-1330036,1330147-1330227	AT1G04730.3 AT1G04730.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G04730	chr1:001325385	0.0	C/1325385-1325438,1325590-1325689,1325855-1326093,1326194-1326253,1326340-1326531,1326637-1326790,1326880-1326967,1327044-1327122,1327225-1327306,1327394-1327491,1327572-1327640,1327837-1327904,1328034-1328107,1328457-1328501,1328722-1328882,1329148-1329213,1329319-1329420,1329559-1329645,1329764-1330036,1330147-1330227	AT1G04730.4 AT1G04730.4 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g04730	chr1:001325385	0.0	C/1325385-1325438,1325590-1325689,1325855-1326093,1326194-1326253,1326340-1326531,1326637-1326790,1326880-1326967,1327044-1327122,1327225-1327306,1327394-1327491,1327572-1327640,1327837-1327904,1328034-1328107,1328457-1328501,1328722-1328882,1329148-1329213,1329319-1329420,1329559-1329645,1329764-1330036,1330147-1330346,1330474-1330607,1330680-1331086	AT1G04730.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn CHROMOSOME TRANSMISSION FIDELITY 18, CTF18, T1G11.3, T1G11_3 gene CTF18 function Necessary for sister chromatid cohesion. Acts in synergy with ETG1. go_function nucleotide binding|GO:0000166||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_component replication fork|GO:0005657|20090939|TAS go_process sister chromatid cohesion|GO:0007062|20090939|IGI go_process sister chromatid cohesion|GO:0007062|20090939|IMP go_function ATPase activity|GO:0016887||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). protein_id AT1G04730.1p transcript_id AT1G04730.1 protein_id AT1G04730.1p transcript_id AT1G04730.1
At1g04750	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332686	AT1G04750.2 CDS vesicle-associated membrane protein 721 [TAIR10] CDS gene_syn AT VAMP7B, ATVAMP721, VAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 gene VAMP721 function vesicle-associated membrane protein 7B (At VAMP7B) mRNA, go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process transport|GO:0006810||IEA go_process vesicle-mediated transport|GO:0016192||IEA go_component endosome|GO:0005768|15876431|TAS go_component plasma membrane|GO:0005886|15876431|TAS go_component membrane|GO:0016020||ISS go_function molecular_function|GO:0003674||ND product vesicle-associated membrane protein 721 note vesicle-associated membrane protein 721 (VAMP721); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: synaptobrevin-related protein 1 (TAIR:AT2G33120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G04750.2p transcript_id AT1G04750.2 protein_id AT1G04750.2p transcript_id AT1G04750.2
AT1G04750	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332686	AT1G04750.3 AT1G04750.3 CDS vesicle-associated membrane protein 721
AT1G04750	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332686	AT1G04750.4 AT1G04750.4 CDS vesicle-associated membrane protein 721
At1g04750	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332730,1333237-1333426	AT1G04750.1 CDS vesicle-associated membrane protein 721 [TAIR10] CDS gene_syn AT VAMP7B, ATVAMP721, VAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 gene VAMP721 function vesicle-associated membrane protein 7B (At VAMP7B) mRNA, go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process transport|GO:0006810||IEA go_process vesicle-mediated transport|GO:0016192||IEA go_component endosome|GO:0005768|15876431|TAS go_component plasma membrane|GO:0005886|15876431|TAS go_component membrane|GO:0016020||ISS go_function molecular_function|GO:0003674||ND product vesicle-associated membrane protein 721 note vesicle-associated membrane protein 721 (VAMP721); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: synaptobrevin-related protein 1 (TAIR:AT2G33120.1); Has 2472 Blast hits to 2471 proteins in 261 species: Archae - 0; Bacteria - 0; Metazoa - 997; Fungi - 453; Plants - 611; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink). protein_id AT1G04750.1p transcript_id AT1G04750.1 protein_id AT1G04750.1p transcript_id AT1G04750.1
At1g04760	chr1:001334760	0.0	W/1334760-1334949,1335332-1335473,1335563-1335683,1335768-1335830,1335924-1336070	AT1G04760.1 CDS vesicle-associated membrane protein 726 [TAIR10] CDS gene_syn ATVAMP726, F13M7.25, F13M7_25, VAMP726, vesicle-associated membrane protein 726 gene VAMP726 function member of Synaptobrevin -like protein family go_component chloroplast|GO:0009507|15028209|IDA go_process transport|GO:0006810||IEA go_process vesicle-mediated transport|GO:0016192||IEA go_component endosome|GO:0005768|15876431|TAS go_component plasma membrane|GO:0005886|15876431|TAS go_component membrane|GO:0016020||ISS go_function molecular_function|GO:0003674||ND product vesicle-associated membrane protein 726 note vesicle-associated membrane protein 726 (VAMP726); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 725 (TAIR:AT2G32670.1); Has 2469 Blast hits to 2468 proteins in 263 species: Archae - 0; Bacteria - 0; Metazoa - 990; Fungi - 448; Plants - 610; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink). protein_id AT1G04760.1p transcript_id AT1G04760.1 protein_id AT1G04760.1p transcript_id AT1G04760.1
AT1G04760	chr1:001334760	0.0	W/1334760-1334949,1335332-1335473,1335563-1335683,1335768-1335830,1335924-1336070	AT1G04760.2 AT1G04760.2 CDS vesicle-associated membrane protein 726
At1g04770	chr1:001336564	0.0	C/1336564-1336986,1337087-1337242,1337344-1337556,1337648-1337767	AT1G04770.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F13M7.24, F13M7_24 go_function binding|GO:0005488||IEA go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). protein_id AT1G04770.1p transcript_id AT1G04770.1 protein_id AT1G04770.1p transcript_id AT1G04770.1
AT1G04779	chr1:001339892	0.0	C/1339892-1340180,1340263-1340327	AT1G04779.1 AT1G04779.1 CDS hypothetical protein
At1g04778	chr1:001339947	0.0	W/1339947-1340117	AT1G04778.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G04778.1p transcript_id AT1G04778.1 protein_id AT1G04778.1p transcript_id AT1G04778.1
At1g04780	chr1:001340891	0.0	C/1340891-1341259,1341340-1342965	AT1G04780.1 CDS Ankyrin repeat family protein [TAIR10] CDS go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Ankyrin repeat family protein note Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G24210.1); Has 1138 Blast hits to 827 proteins in 107 species: Archae - 2; Bacteria - 12; Metazoa - 639; Fungi - 18; Plants - 352; Viruses - 2; Other Eukaryotes - 113 (source: NCBI BLink). protein_id AT1G04780.1p transcript_id AT1G04780.1 protein_id AT1G04780.1p transcript_id AT1G04780.1
At1g04790	chr1:001345469	0.0	W/1345469-1346241,1346359-1346839,1346942-1347040,1347238-1347438,1347527-1347615,1347705-1347804,1347899-1347997,1348081-1348143	AT1G04790.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F13M7.22, F13M7_22 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G55530.1); Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2591; Fungi - 765; Plants - 4746; Viruses - 72; Other Eukaryotes - 1251 (source: NCBI BLink). protein_id AT1G04790.1p transcript_id AT1G04790.1 protein_id AT1G04790.1p transcript_id AT1G04790.1
At1g04800	chr1:001348635	0.0	C/1348635-1349237	AT1G04800.1 CDS glycine-rich protein [TAIR10] CDS gene_syn F13M7.21, F13M7_21 go_component endomembrane system|GO:0012505||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function molecular_function|GO:0003674||ND product glycine-rich protein note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 109132 Blast hits to 26905 proteins in 1855 species: Archae - 173; Bacteria - 37969; Metazoa - 32319; Fungi - 6881; Plants - 10265; Viruses - 1569; Other Eukaryotes - 19956 (source: NCBI BLink). protein_id AT1G04800.1p transcript_id AT1G04800.1 protein_id AT1G04800.1p transcript_id AT1G04800.1
At1g04810	chr1:001350304	0.0	W/1350304-1350449,1350833-1350902,1351107-1351212,1351526-1351634,1351713-1351881,1352071-1352531,1352638-1352773,1352876-1353124,1353224-1353444,1353541-1353799,1353921-1354153,1354240-1354738,1354914-1355261	AT1G04810.1 CDS 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit [TAIR10] CDS gene_syn F13M7.20, F13M7_20 go_component plasma membrane|GO:0005886|17317660|IDA go_function binding|GO:0005488||IEA go_function enzyme regulator activity|GO:0030234||IEA go_component proteasome complex|GO:0000502|20516081|IDA go_component nucleus|GO:0005634|11742986|TAS go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|TAS go_component proteasome regulatory particle, base subcomplex|GO:0008540||ISS go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS go_process protein catabolic process|GO:0030163|11742986|TAS product 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit note 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit; FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024), 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (InterPro:IPR016642); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (TAIR:AT2G32730.1); Has 1171 Blast hits to 1071 proteins in 297 species: Archae - 14; Bacteria - 33; Metazoa - 390; Fungi - 382; Plants - 143; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink). protein_id AT1G04810.1p transcript_id AT1G04810.1 protein_id AT1G04810.1p transcript_id AT1G04810.1
At1g04820	chr1:001356421	0.0	C/1356421-1357074,1357158-1357763,1358174-1358266	AT1G04820.1 CDS tubulin alpha-4 chain [TAIR10] CDS gene_syn F13M7.19, TOR2, TORTIFOLIA 2, TUA4, tubulin alpha-4 chain gene TUA4 function Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|15060130|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|15028209|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosol|GO:0005829|18433157|IDA go_component tubulin complex|GO:0045298|1498608|ISS go_process microtubule-based process|GO:0007017|1498608|TAS go_process cellular response to gravity|GO:0071258|20018592|IMP go_function structural constituent of cytoskeleton|GO:0005200|1498608|ISS product tubulin alpha-4 chain note tubulin alpha-4 chain (TUA4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process, cellular response to gravity; LOCATED IN: tubulin complex, cytosol, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-2 chain (TAIR:AT1G50010.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink). protein_id AT1G04820.1p transcript_id AT1G04820.1 protein_id AT1G04820.1p transcript_id AT1G04820.1
At1g04830	chr1:001358782	0.0	C/1358782-1358854,1359127-1359251,1359381-1359497,1359720-1359899,1360225-1360353,1360438-1360536,1360680-1360832,1361075-1361179,1361318-1361410,1361539-1361844	AT1G04830.2 CDS Ypt/Rab-GAP domain of gyp1p superfamily protein [TAIR10] CDS gene_syn F13M7.18, F13M7_18 go_component intracellular|GO:0005622||IEA go_process regulation of Rab GTPase activity|GO:0032313||IEA go_function RAB GTPase activator activity|GO:0005097||IEA product Ypt/Rab-GAP domain of gyp1p superfamily protein note Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1). protein_id AT1G04830.2p transcript_id AT1G04830.2 protein_id AT1G04830.2p transcript_id AT1G04830.2
At1g04830	chr1:001359087	0.0	C/1359087-1359251,1359381-1359497,1359720-1359899,1360225-1360353,1360438-1360536,1360680-1360832,1361075-1361179,1361318-1361410,1361539-1361844	AT1G04830.1 CDS Ypt/Rab-GAP domain of gyp1p superfamily protein [TAIR10] CDS gene_syn F13M7.18, F13M7_18 go_component intracellular|GO:0005622||IEA go_process regulation of Rab GTPase activity|GO:0032313||IEA go_function RAB GTPase activator activity|GO:0005097||IEA product Ypt/Rab-GAP domain of gyp1p superfamily protein note Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1); Has 3724 Blast hits to 3613 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 1821; Fungi - 641; Plants - 593; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink). protein_id AT1G04830.1p transcript_id AT1G04830.1 protein_id AT1G04830.1p transcript_id AT1G04830.1
AT1G04830	chr1:001359087	0.0	C/1359087-1359251,1359381-1359497,1359720-1359899,1360438-1360536,1360680-1360832,1361075-1361179,1361318-1361410,1361539-1361844	AT1G04830.3 AT1G04830.3 CDS Ypt/Rab-GAP domain of gyp1p superfamily protein
At1g04840	chr1:001362867	0.0	C/1362867-1363699,1363798-1364962	AT1G04840.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F13M7.17, F13M7_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G74630.1); Has 39151 Blast hits to 14409 proteins in 285 species: Archae - 0; Bacteria - 8; Metazoa - 167; Fungi - 139; Plants - 38292; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink). protein_id AT1G04840.1p transcript_id AT1G04840.1 protein_id AT1G04840.1p transcript_id AT1G04840.1
AT1G04850	chr1:001365311	0.0	C/1365311-1365487,1365612-1365731,1365873-1365950,1366039-1366128,1366218-1366299,1366391-1366458,1366601-1366661,1366807-1366886,1367147-1367223,1367613-1367708,1367790-1367835	AT1G04850.2 AT1G04850.2 CDS ubiquitin-associated (UBA)/TS-N domain-containing protein
At1g04850	chr1:001365311	0.0	C/1365311-1365487,1365612-1365731,1365873-1365950,1366039-1366128,1366218-1366299,1366391-1366458,1366601-1366661,1366807-1366886,1367147-1367223,1367613-1367708,1367790-1367934,1368539-1368706	AT1G04850.1 CDS ubiquitin-associated (UBA)/TS-N domain-containing protein [TAIR10] CDS gene_syn F13M7.16, F13M7_16 go_component intracellular|GO:0005622||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND product ubiquitin-associated (UBA)/TS-N domain-containing protein note ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567), Zinc finger, C2H2-type (InterPro:IPR007087), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48690.1); Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2591; Fungi - 765; Plants - 4746; Viruses - 72; Other Eukaryotes - 1251 (source: NCBI BLink). protein_id AT1G04850.1p transcript_id AT1G04850.1 protein_id AT1G04850.1p transcript_id AT1G04850.1
At1g04860	chr1:001369306	0.0	C/1369306-1369546,1369646-1372290	AT1G04860.1 CDS ubiquitin-specific protease 2 [TAIR10] CDS gene_syn ATUBP2, F13M7.15, F13M7_15, UBIQUITIN-SPECIFIC PROTEASE 2, UBP2, ubiquitin-specific protease 2 gene UBP2 function Encodes a ubiquitin-specific protease. go_component chloroplast|GO:0009507|15028209|IDA go_component proteasome complex|GO:0000502|12663224|TAS go_process ubiquitin-dependent protein catabolic process|GO:0006511|12663224|TAS go_function ubiquitin-specific protease activity|GO:0004843|11115897|IMP go_function ubiquitin-specific protease activity|GO:0004843||ISS product ubiquitin-specific protease 2 note ubiquitin-specific protease 2 (UBP2); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 1 (TAIR:AT2G32780.1); Has 10400 Blast hits to 6714 proteins in 274 species: Archae - 0; Bacteria - 50; Metazoa - 5279; Fungi - 1927; Plants - 1459; Viruses - 5; Other Eukaryotes - 1680 (source: NCBI BLink). protein_id AT1G04860.1p transcript_id AT1G04860.1 protein_id AT1G04860.1p transcript_id AT1G04860.1
At1g04870	chr1:001373485	0.0	C/1373485-1373661,1373751-1373834,1373917-1374102,1374248-1374437,1374742-1374847,1375029-1375128	AT1G04870.1 CDS protein arginine methyltransferase 10 [TAIR10] CDS gene_syn ATPRMT10, F13M7.14, F13M7_14, PRMT10, protein arginine methyltransferase 10 gene PRMT10 function Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts. go_component cytoplasm|GO:0005737||IEA go_process vegetative to reproductive phase transition of meristem|GO:0010228|18660432|IGI go_function methyltransferase activity|GO:0008168||ISS product protein arginine methyltransferase 10 note protein arginine methyltransferase 10 (PRMT10); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 6 (TAIR:AT3G20020.1); Has 1641 Blast hits to 1634 proteins in 326 species: Archae - 0; Bacteria - 17; Metazoa - 883; Fungi - 244; Plants - 262; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink). protein_id AT1G04870.1p transcript_id AT1G04870.1 protein_id AT1G04870.1p transcript_id AT1G04870.1
At1g04870	chr1:001373485	0.0	C/1373485-1373661,1373751-1373834,1373917-1374102,1374248-1374437,1374742-1374847,1375029-1375221,1375383-1375598	AT1G04870.2 CDS protein arginine methyltransferase 10 [TAIR10] CDS gene_syn ATPRMT10, F13M7.14, F13M7_14, PRMT10, protein arginine methyltransferase 10 gene PRMT10 function Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts. go_component cytoplasm|GO:0005737||IEA go_process vegetative to reproductive phase transition of meristem|GO:0010228|18007657|IMP go_process peptidyl-arginine methylation, to asymmetrical-dimethyl arginine|GO:0019919|18007657|IDA go_function histone-arginine N-methyltransferase activity|GO:0008469|18007657|IDA go_function [myelin basic protein]-arginine N-methyltransferase activity|GO:0016277|18007657|IDA go_function protein-arginine omega-N monomethyltransferase activity|GO:0035241|18007657|IDA go_function protein-arginine omega-N asymmetric methyltransferase activity|GO:0035242|18007657|IDA go_process vegetative to reproductive phase transition of meristem|GO:0010228|18660432|IGI go_function methyltransferase activity|GO:0008168||ISS product protein arginine methyltransferase 10 note protein arginine methyltransferase 10 (PRMT10); FUNCTIONS IN: histone-arginine N-methyltransferase activity, methyltransferase activity, protein-arginine omega-N asymmetric methyltransferase activity, [myelin basic protein]-arginine N-methyltransferase activity, protein-arginine omega-N monomethyltransferase activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, peptidyl-arginine methylation, to asymmetrical-dimethyl arginine; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 6 (TAIR:AT3G20020.1); Has 3346 Blast hits to 3335 proteins in 890 species: Archae - 50; Bacteria - 1167; Metazoa - 1181; Fungi - 251; Plants - 354; Viruses - 1; Other Eukaryotes - 342 (source: NCBI BLink). protein_id AT1G04870.2p transcript_id AT1G04870.2 protein_id AT1G04870.2p transcript_id AT1G04870.2
At1g04880	chr1:001376106	0.0	C/1376106-1376525,1376620-1377035,1377139-1377261,1377354-1377510,1377665-1377743,1378113-1378264	AT1G04880.1 CDS HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain [TAIR10] CDS gene_syn F13M7.13, F13M7_13 go_component intracellular|GO:0005622||IEA go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain note HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G76110.1); Has 3445 Blast hits to 3110 proteins in 301 species: Archae - 0; Bacteria - 5; Metazoa - 2269; Fungi - 308; Plants - 431; Viruses - 3; Other Eukaryotes - 429 (source: NCBI BLink). protein_id AT1G04880.1p transcript_id AT1G04880.1 protein_id AT1G04880.1p transcript_id AT1G04880.1
At1g04890	chr1:001381116	0.0	C/1381116-1381181,1381276-1382249,1382351-1382546	AT1G04890.1 CDS zein-binding protein (Protein of unknown function, DUF593) [TAIR10] CDS gene_syn F13M7.12, F13M7_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF593 note CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT4G13630.2); Has 7701 Blast hits to 5611 proteins in 507 species: Archae - 60; Bacteria - 425; Metazoa - 4500; Fungi - 427; Plants - 586; Viruses - 7; Other Eukaryotes - 1696 (source: NCBI BLink). protein_id AT1G04890.1p transcript_id AT1G04890.1 protein_id AT1G04890.1p transcript_id AT1G04890.1
AT1G04895	chr1:001383008	0.0	C/1383008-1383046,1383067-1383108,1383258-1383422	AT1G04895.1 AT1G04895.1 CDS hypothetical protein
At1g04900	chr1:001383912	0.0	W/1383912-1384040,1384340-1384451,1384659-1384741,1384837-1384902,1385401-1385501,1385647-1385765,1386109-1386149,1386250-1386338,1386410-1386569,1386641-1386757,1387024-1387068,1387203-1387334,1387427-1387561	AT1G04900.1 CDS NADH dehydrogenase [ubiquinone] complex I, assembly factor-like protein (DUF185) [TAIR10] CDS gene_syn F13M7.11, F13M7_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF185) note Protein of unknown function (DUF185); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF185 (InterPro:IPR003788); Has 316 Blast hits to 314 proteins in 164 species: Archae - 0; Bacteria - 117; Metazoa - 2; Fungi - 113; Plants - 44; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). protein_id AT1G04900.1p transcript_id AT1G04900.1 protein_id AT1G04900.1p transcript_id AT1G04900.1
At1g04910	chr1:001388101	0.0	C/1388101-1388715,1388881-1389010,1389204-1389487,1389581-1389704,1389993-1390081,1390264-1390334,1390451-1390529,1390777-1390936,1391067-1391074	AT1G04910.1 CDS O-fucosyltransferase family protein [TAIR10] CDS gene_syn F13M7.10, F13M7_10 go_component Golgi apparatus|GO:0005794|16618929|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product O-fucosyltransferase family protein note O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G22460.1); Has 861 Blast hits to 824 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 861; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04910.1p transcript_id AT1G04910.1 protein_id AT1G04910.1p transcript_id AT1G04910.1
At1g04920	chr1:001391674	0.0	C/1391674-1391950,1392056-1392183,1392257-1393192,1393269-1393331,1393480-1393710,1393796-1393927,1394014-1394148,1394231-1394926,1395008-1395071,1395145-1395377,1395463-1395756	AT1G04920.1 CDS sucrose phosphate synthase 3F [TAIR10] CDS gene_syn ATSPS3F, F13M7.9, F13M7_9, SPS3F, sucrose phosphate synthase 3F gene SPS3F function Encodes a protein with putative sucrose-phosphate synthase activity. go_process sucrose metabolic process|GO:0005985||IEA go_process biosynthetic process|GO:0009058||IEA go_function sucrose-phosphate synthase activity|GO:0046524|16876912|RCA go_component cellular_component|GO:0005575||ND go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product sucrose phosphate synthase 3F note sucrose phosphate synthase 3F (SPS3F); FUNCTIONS IN: sucrose-phosphate synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380), Sucrose synthase (InterPro:IPR000368), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose phosphate synthase 1F (TAIR:AT5G20280.1); Has 8635 Blast hits to 8489 proteins in 1558 species: Archae - 393; Bacteria - 5603; Metazoa - 16; Fungi - 85; Plants - 793; Viruses - 0; Other Eukaryotes - 1745 (source: NCBI BLink). protein_id AT1G04920.1p transcript_id AT1G04920.1 protein_id AT1G04920.1p transcript_id AT1G04920.1
At1g04930	chr1:001396546	0.0	C/1396546-1396627,1396786-1396865,1397011-1397124,1397497-1397577,1397668-1397707,1397830-1397882,1398281-1398370,1398440-1398988	AT1G04930.2 CDS hydroxyproline-rich glycoprotein family protein [TAIR10] CDS gene_syn F13M7.8, F13M7_8 go_component chloroplast|GO:0009507||IEA product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1). protein_id AT1G04930.2p transcript_id AT1G04930.2 protein_id AT1G04930.2p transcript_id AT1G04930.2
At1g04930	chr1:001396546	0.0	C/1396546-1396627,1396786-1396865,1397011-1397124,1397497-1397577,1397668-1397707,1397830-1397882,1398440-1398988	AT1G04930.1 CDS hydroxyproline-rich glycoprotein family protein [TAIR10] CDS gene_syn F13M7.8, F13M7_8 go_component chloroplast|GO:0009507||IEA product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1); Has 1624 Blast hits to 1330 proteins in 201 species: Archae - 0; Bacteria - 140; Metazoa - 517; Fungi - 162; Plants - 364; Viruses - 182; Other Eukaryotes - 259 (source: NCBI BLink). protein_id AT1G04930.1p transcript_id AT1G04930.1 protein_id AT1G04930.1p transcript_id AT1G04930.1
AT1G04930	chr1:001397128	0.0	C/1397128-1397139,1397497-1397577,1397668-1397707,1397830-1397882,1398440-1398988	AT1G04930.3 AT1G04930.3 CDS hydroxyproline-rich glycoprotein family protein
At1g04940	chr1:001399588	0.0	W/1399588-1399774,1399979-1400616	AT1G04940.1 CDS translocon at the inner envelope membrane of chloroplasts 20 [TAIR10] CDS gene_syn F13M7.7, F13M7_7, TIC20, translocon at the inner envelope membrane of chloroplasts 20 gene TIC20 function Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation. go_component membrane|GO:0016020|11152613|ISS product translocon at the inner envelope membrane of chloroplasts 20 note translocon at the inner envelope membrane of chloroplasts 20 (TIC20); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: HIT-type Zinc finger family protein (TAIR:AT1G04945.3); Has 279 Blast hits to 278 proteins in 76 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). protein_id AT1G04940.1p transcript_id AT1G04940.1 protein_id AT1G04940.1p transcript_id AT1G04940.1
At1g04945	chr1:001399588	0.0	W/1399588-1399774,1399979-1400554,1400976-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402651	AT1G04945.3 CDS HIT-type Zinc finger family protein [TAIR10] CDS go_component integral to membrane|GO:0016021||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product HIT-type Zinc finger family protein note HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Zinc finger, HIT-type (InterPro:IPR007529); BEST Arabidopsis thaliana protein match is: translocon at the inner envelope membrane of chloroplasts 20 (TAIR:AT1G04940.1). protein_id AT1G04945.3p transcript_id AT1G04945.3 protein_id AT1G04945.3p transcript_id AT1G04945.3
AT1G04943	chr1:001399875	0.0	C/1399875-1400182,1400188-1400278	AT1G04943.1 AT1G04943.1 CDS hypothetical protein
At1g04945	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402520,1402596-1402651	AT1G04945.1 CDS HIT-type Zinc finger family protein [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product HIT-type Zinc finger family protein note HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 408 Blast hits to 406 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 151; Plants - 52; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). protein_id AT1G04945.1p transcript_id AT1G04945.1 protein_id AT1G04945.1p transcript_id AT1G04945.1
AT1G04945	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402520,1402623-1402651	AT1G04945.4 AT1G04945.4 CDS HIT-type Zinc finger family protein
At1g04945	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402651	AT1G04945.2 CDS HIT-type Zinc finger family protein [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product HIT-type Zinc finger family protein note HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 408 Blast hits to 406 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 151; Plants - 52; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). protein_id AT1G04945.2p transcript_id AT1G04945.2 protein_id AT1G04945.2p transcript_id AT1G04945.2
At1g04950	chr1:001403606	0.0	C/1403606-1404112,1404201-1404326,1404617-1404749,1405110-1405234,1405560-1405655,1405743-1405880,1405957-1406057,1406339-1406447,1406541-1406642,1406872-1406958,1407059-1407184	AT1G04950.1 CDS TATA BOX ASSOCIATED FACTOR II 59 [TAIR10] CDS gene_syn ATTAF6, F13M7.6, F13M7_6, TAF6, TAFII59, TATA BOX ASSOCIATED FACTOR II 59, TBP-associated factor 6 gene TAFII59 function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. go_component nucleus|GO:0005634||IEA go_function DNA binding|GO:0003677||IEA go_function RNA polymerase II transcription factor activity|GO:0003702||IEA go_function transcription initiation factor activity|GO:0016986||IEA go_component nucleus|GO:0005634||ISS go_process transcription initiation|GO:0006352||ISS go_process pollen tube growth|GO:0009860|16039640|IMP go_function transcription initiation factor activity|GO:0016986||ISS product TATA BOX ASSOCIATED FACTOR II 59 note TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 496 Blast hits to 490 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 144; Plants - 74; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). protein_id AT1G04950.1p transcript_id AT1G04950.1 protein_id AT1G04950.1p transcript_id AT1G04950.1
At1g04950	chr1:001403606	0.0	C/1403606-1404112,1404201-1404326,1404617-1404749,1405110-1405234,1405560-1405655,1405743-1405880,1405957-1406057,1406339-1406447,1406541-1406642,1406872-1406958,1407059-1407184	AT1G04950.2 CDS TATA BOX ASSOCIATED FACTOR II 59 [TAIR10] CDS gene_syn ATTAF6, F13M7.6, F13M7_6, TAF6, TAFII59, TATA BOX ASSOCIATED FACTOR II 59, TBP-associated factor 6 gene TAFII59 function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. go_component nucleus|GO:0005634||IEA go_function DNA binding|GO:0003677||IEA go_function RNA polymerase II transcription factor activity|GO:0003702||IEA go_function transcription initiation factor activity|GO:0016986||IEA go_component nucleus|GO:0005634||ISS go_process transcription initiation|GO:0006352||ISS go_process pollen tube growth|GO:0009860|16039640|IMP go_function transcription initiation factor activity|GO:0016986||ISS product TATA BOX ASSOCIATED FACTOR II 59 note TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 496 Blast hits to 490 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 144; Plants - 74; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). protein_id AT1G04950.2p transcript_id AT1G04950.2 protein_id AT1G04950.2p transcript_id AT1G04950.2
At1g04950	chr1:001403606	0.0	C/1403606-1404112,1404201-1404326,1404617-1404749,1405110-1405234,1405560-1405655,1405743-1405880,1405957-1406057,1406339-1406447,1406541-1406642,1406872-1406958,1407059-1407184	AT1G04950.3 CDS TATA BOX ASSOCIATED FACTOR II 59 [TAIR10] CDS gene_syn ATTAF6, F13M7.6, F13M7_6, TAF6, TAFII59, TATA BOX ASSOCIATED FACTOR II 59, TBP-associated factor 6 gene TAFII59 function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. go_component nucleus|GO:0005634||IEA go_function DNA binding|GO:0003677||IEA go_function RNA polymerase II transcription factor activity|GO:0003702||IEA go_function transcription initiation factor activity|GO:0016986||IEA go_component nucleus|GO:0005634||ISS go_process transcription initiation|GO:0006352||ISS go_process pollen tube growth|GO:0009860|16039640|IMP go_function transcription initiation factor activity|GO:0016986||ISS product TATA BOX ASSOCIATED FACTOR II 59 note TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G04950.3p transcript_id AT1G04950.3 protein_id AT1G04950.3p transcript_id AT1G04950.3
At1g04960	chr1:001408021	0.0	C/1408021-1408200,1408458-1408514,1408617-1408694,1408797-1408829,1408931-1409005,1409352-1409441,1409528-1409629,1409756-1409823,1409952-1410033,1410185-1410318,1410619-1410673	AT1G04960.1 CDS golgin family A protein (DUF1664) [TAIR10] CDS gene_syn F13M7.5, F13M7_5 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1664) note Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1); Has 160 Blast hits to 159 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G04960.1p transcript_id AT1G04960.1 protein_id AT1G04960.1p transcript_id AT1G04960.1
At1g04960	chr1:001408021	0.0	C/1408021-1408200,1408458-1408514,1408617-1408694,1408797-1408829,1408931-1409005,1409352-1409441,1409528-1409629,1409756-1409823,1409952-1410033,1410185-1410424	AT1G04960.2 CDS golgin family A protein (DUF1664) [TAIR10] CDS gene_syn F13M7.5, F13M7_5 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1664) note Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1); Has 160 Blast hits to 159 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G04960.2p transcript_id AT1G04960.2 protein_id AT1G04960.2p transcript_id AT1G04960.2
At1g04970	chr1:001411216	0.0	W/1411216-1411623,1411915-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.1 CDS lipid-binding serum glycoprotein family protein [TAIR10] CDS gene_syn F13M7.4, F13M7_4 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_function lipid binding|GO:0008289||IEA go_process biological_process|GO:0008150||ND go_function lipid binding|GO:0008289||ISS product lipid-binding serum glycoprotein family protein note lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2); Has 476 Blast hits to 472 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 390; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). protein_id AT1G04970.1p transcript_id AT1G04970.1 protein_id AT1G04970.1p transcript_id AT1G04970.1
At1g04970	chr1:001411885	0.0	W/1411885-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.2 CDS lipid-binding serum glycoprotein family protein [TAIR10] CDS gene_syn F13M7.4, F13M7_4 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_function lipid binding|GO:0008289||IEA go_process biological_process|GO:0008150||ND go_function lipid binding|GO:0008289||ISS product lipid-binding serum glycoprotein family protein note lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2); Has 420 Blast hits to 417 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). protein_id AT1G04970.2p transcript_id AT1G04970.2 protein_id AT1G04970.2p transcript_id AT1G04970.2
AT1G04970	chr1:001411885	0.0	W/1411885-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.3 AT1G04970.3 CDS lipid-binding serum glycoprotein family protein
At1g04980	chr1:001413869	0.0	C/1413869-1414055,1414156-1414302,1414417-1414562,1414646-1414822,1414993-1415092,1415197-1415375,1415450-1415563,1415675-1415833,1415986-1416120	AT1G04980.1 CDS PDI-like 2-2 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDI10, ATPDIL2-2, F13M7.3, F13M7_3, PDI-like 2-2, PDI10, PDIL2-2, PROTEIN DISULFIDE ISOMERASE gene PDIL2-2 function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. go_component plant-type cell wall|GO:0009505|16287169|IDA go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS product PDI-like 2-2 note PDI-like 2-2 (PDIL2-2); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 2-3 (TAIR:AT2G32920.1); Has 36254 Blast hits to 18629 proteins in 2906 species: Archae - 392; Bacteria - 18066; Metazoa - 5792; Fungi - 2053; Plants - 2624; Viruses - 46; Other Eukaryotes - 7281 (source: NCBI BLink). protein_id AT1G04980.1p transcript_id AT1G04980.1 protein_id AT1G04980.1p transcript_id AT1G04980.1
At1g04985	chr1:001416563	0.0	C/1416563-1416779,1416869-1416978,1417326-1417390,1417974-1418046,1418175-1418291	AT1G04985.1 CDS triacylglycerol lipase-like protein [TAIR10] CDS gene_syn F13M7.2, F13M7_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G04985.1p transcript_id AT1G04985.1 protein_id AT1G04985.1p transcript_id AT1G04985.1
AT1G04985	chr1:001416563	0.0	C/1416563-1416779,1416869-1416978,1417326-1417406	AT1G04985.2 AT1G04985.2 CDS triacylglycerol lipase-like protein
At1g04990	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.1 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein [TAIR10] CDS gene_syn F13M7.1, F13M7_1 go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product Zinc finger C-x8-C-x5-C-x3-H type family protein note Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 576; Fungi - 244; Plants - 789; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink). protein_id AT1G04990.1p transcript_id AT1G04990.1 protein_id AT1G04990.1p transcript_id AT1G04990.1
At1g04990	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.2 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein [TAIR10] CDS gene_syn F13M7.1, F13M7_1 go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product Zinc finger C-x8-C-x5-C-x3-H type family protein note Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G04990.2p transcript_id AT1G04990.2 protein_id AT1G04990.2p transcript_id AT1G04990.2
AT1G04990	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.6 AT1G04990.6 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G04990	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420612	AT1G04990.3 AT1G04990.3 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G04990	chr1:001419368	0.0	C/1419368-1419658,1419847-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.5 AT1G04990.5 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G04990	chr1:001419368	0.0	C/1419368-1419658,1419847-1420032,1420104-1420373,1420448-1420612	AT1G04990.4 AT1G04990.4 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
At1g05000	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1426235-1426330,1427899-1427956,1428071-1428114,1428208-1428393	AT1G05000.2 CDS Phosphotyrosine protein phosphatases superfamily protein [TAIR10] CDS gene_syn T7A14.14, T7A14_14 go_process dephosphorylation|GO:0016311||IEA go_function protein tyrosine phosphatase activity|GO:0004725||IEA go_function phosphatase activity|GO:0016791||IEA go_component cellular_component|GO:0005575||ND go_function phosphoprotein phosphatase activity|GO:0004721||ISS product Phosphotyrosine protein phosphatases superfamily protein note Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1); Has 580 Blast hits to 572 proteins in 119 species: Archae - 0; Bacteria - 14; Metazoa - 1; Fungi - 314; Plants - 145; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). protein_id AT1G05000.2p transcript_id AT1G05000.2 protein_id AT1G05000.2p transcript_id AT1G05000.2
AT1G05000	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1426235-1426399	AT1G05000.3 AT1G05000.3 CDS Phosphotyrosine protein phosphatases superfamily protein
At1g05000	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1427899-1427956,1428071-1428114,1428208-1428393	AT1G05000.1 CDS Phosphotyrosine protein phosphatases superfamily protein [TAIR10] CDS gene_syn T7A14.14, T7A14_14 go_process dephosphorylation|GO:0016311||IEA go_function protein tyrosine phosphatase activity|GO:0004725||IEA go_function phosphatase activity|GO:0016791||IEA go_component cellular_component|GO:0005575||ND go_function phosphoprotein phosphatase activity|GO:0004721||ISS product Phosphotyrosine protein phosphatases superfamily protein note Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1); Has 669 Blast hits to 655 proteins in 149 species: Archae - 0; Bacteria - 50; Metazoa - 4; Fungi - 355; Plants - 145; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink). protein_id AT1G05000.1p transcript_id AT1G05000.1 protein_id AT1G05000.1p transcript_id AT1G05000.1
AT1G05005	chr1:001429048	0.0	W/1429048-1429261,1429413-1429870,1430045-1430056	AT1G05005.1 AT1G05005.1 CDS PPR containing protein, putative
At1g05010	chr1:001431419	0.0	C/1431419-1431724,1431807-1432140,1432292-1432518,1432591-1432695	AT1G05010.1 CDS ethylene-forming enzyme [TAIR10] CDS gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE, ACO4, EAT1, EFE, ETHYLENE-FORMING ENZYME, T7A14.12, T7A14_12, ethylene forming enzyme, ethylene-forming enzyme gene EFE function Encodes 1-aminocyclopropane-1-carboxylate oxidase go_process response to fungus|GO:0009620|19220788|IEP go_process ethylene biosynthetic process|GO:0009693|16311726|TAS go_process ethylene biosynthetic process|GO:0009693|8262380|ISS go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|8262380|ISS product ethylene-forming enzyme note ethylene-forming enzyme (EFE); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: response to fungus, ethylene biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1); Has 8587 Blast hits to 8552 proteins in 1009 species: Archae - 0; Bacteria - 1142; Metazoa - 103; Fungi - 1035; Plants - 4924; Viruses - 0; Other Eukaryotes - 1383 (source: NCBI BLink). protein_id AT1G05010.1p transcript_id AT1G05010.1 protein_id AT1G05010.1p transcript_id AT1G05010.1
At1g05020	chr1:001435384	0.0	C/1435384-1437345	AT1G05020.1 CDS ENTH/ANTH/VHS superfamily protein [TAIR10] CDS gene_syn T7A14.11, T7A14_11 go_component clathrin coat|GO:0030118||IEA go_process clathrin coat assembly|GO:0048268||IEA go_function phospholipid binding|GO:0005543||IEA go_function phosphatidylinositol binding|GO:0005545||IEA go_function clathrin binding|GO:0030276||IEA go_function binding|GO:0005488||ISS product ENTH/ANTH/VHS superfamily protein note ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT4G32285.2); Has 663 Blast hits to 661 proteins in 84 species: Archae - 0; Bacteria - 2; Metazoa - 204; Fungi - 47; Plants - 394; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT1G05020.1p transcript_id AT1G05020.1 protein_id AT1G05020.1p transcript_id AT1G05020.1
At1g05030	chr1:001438324	0.0	C/1438324-1438515,1438596-1438710,1438811-1438899,1438985-1439058,1439158-1439304,1439502-1439658,1439735-1439828,1439898-1440010,1440234-1440333,1440446-1440646,1441003-1441126,1441217-1441385	AT1G05030.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn T7A14.10, T7A14_10 go_component mitochondrion|GO:0005739||IEA go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrion, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: plastidic GLC translocator (TAIR:AT5G16150.3); Has 32095 Blast hits to 31550 proteins in 2260 species: Archae - 588; Bacteria - 15264; Metazoa - 5199; Fungi - 6752; Plants - 2455; Viruses - 0; Other Eukaryotes - 1837 (source: NCBI BLink). protein_id AT1G05030.1p transcript_id AT1G05030.1 protein_id AT1G05030.1p transcript_id AT1G05030.1
AT1G05030	chr1:001438324	0.0	C/1438324-1438515,1438596-1438710,1438811-1438899,1438985-1439058,1439158-1439304,1439502-1439658,1439735-1439828,1439898-1440010,1440234-1440333,1440446-1440659,1441003-1441126	AT1G05030.2 AT1G05030.2 CDS Major facilitator superfamily protein
AT1G05035	chr1:001444983	0.0	W/1444983-1445224,1445625-1445669,1445787-1445832,1446087-1446116	AT1G05035.1 AT1G05035.1 CDS hypothetical protein
At1g05040	chr1:001447758	0.0	C/1447758-1447847,1447954-1448056,1448141-1448448	AT1G05040.1 CDS UBA-like domain protein [TAIR10] CDS gene_syn T7A14.9, T7A14_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1); Has 14 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05040.1p transcript_id AT1G05040.1 protein_id AT1G05040.1p transcript_id AT1G05040.1
At1g05040	chr1:001447891	0.0	C/1447891-1448056,1448141-1448448	AT1G05040.2 CDS UBA-like domain protein [TAIR10] CDS gene_syn T7A14.9, T7A14_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05040.2p transcript_id AT1G05040.2 protein_id AT1G05040.2p transcript_id AT1G05040.2
At1g05055	chr1:001448913	0.0	C/1448913-1449061,1449237-1449615,1449713-1450174,1450577-1450852	AT1G05055.1 CDS general transcription factor II H2 [TAIR10] CDS gene_syn AT1G05050, ATGTF2H2, GTF2H2, general transcription factor II H2 gene GTF2H2 function Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD. go_component holo TFIIH complex|GO:0005675|16623910|IGI go_process nucleotide-excision repair|GO:0006289|16623910|IGI go_process regulation of transcription from RNA polymerase II promoter, global|GO:0006358|16623910|IGI go_function general RNA polymerase II transcription factor activity|GO:0016251|16623910|IGI product general transcription factor II H2 note general transcription factor II H2 (GTF2H2); CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), TFIIH basal transcription factor complex, subunit SSL1 (InterPro:IPR012170), Zinc finger, RING-type (InterPro:IPR001841), TFIIH C1-like, C-terminal (InterPro:IPR004595), von Willebrand factor, type A (InterPro:IPR002035); Has 470 Blast hits to 463 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 160; Plants - 39; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). protein_id AT1G05055.1p transcript_id AT1G05055.1 protein_id AT1G05055.1p transcript_id AT1G05055.1
At1g05060	chr1:001451255	0.0	C/1451255-1451362,1451451-1451537,1451665-1451756,1452295-1452419,1452509-1452858	AT1G05060.1 CDS coiled-coil protein, putative [TAIR10] CDS gene_syn T7A14.7, T7A14_7 go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05060.1p transcript_id AT1G05060.1 protein_id AT1G05060.1p transcript_id AT1G05060.1
At1g05061	chr1:001453216	0.0	C/1453216-1454260	AT1G05061.1 [TAIR10] pseudogene
At1g05065	chr1:001454969	0.0	C/1454969-1455220	AT1G05065.1 CDS CLAVATA3/ESR-RELATED 20 [TAIR10] CDS gene_syn CLAVATA3/ESR-RELATED 20, CLE20 gene CLE20 function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. go_component apoplast|GO:0048046|11457943|RCA go_process signal transduction|GO:0007165||ISS go_function receptor binding|GO:0005102||ISS product CLAVATA3/ESR-RELATED 20 note CLAVATA3/ESR-RELATED 20 (CLE20); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05065.1p transcript_id AT1G05065.1 protein_id AT1G05065.1p transcript_id AT1G05065.1
At1g05070	chr1:001457172	0.0	C/1457172-1457518,1457618-1457641,1458348-1458531	AT1G05070.1 CDS transmembrane protein, putative (DUF1068) [TAIR10] CDS gene_syn T7A14.6, T7A14_6 go_component Golgi apparatus|GO:0005794|16618929|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1068) note Protein of unknown function (DUF1068); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT2G32580.1); Has 119 Blast hits to 119 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G05070.1p transcript_id AT1G05070.1 protein_id AT1G05070.1p transcript_id AT1G05070.1
At1g05080	chr1:001459091	0.0	W/1459091-1459978,1460063-1460197,1460283-1460579	AT1G05080.1 CDS F-box/RNI-like/FBD-like domains-containing protein [TAIR10] CDS gene_syn T7A14.5, T7A14_5 go_function molecular_function|GO:0003674||ND product F-box/RNI-like/FBD-like domains-containing protein note F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT5G44850.1); Has 1798 Blast hits to 1750 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1794; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G05080.1p transcript_id AT1G05080.1 protein_id AT1G05080.1p transcript_id AT1G05080.1
At1g05085	chr1:001460988	0.0	W/1460988-1461125,1461215-1461264,1461395-1461552,1461642-1461670	AT1G05085.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05085.1p transcript_id AT1G05085.1 protein_id AT1G05085.1p transcript_id AT1G05085.1
At1g05090	chr1:001463202	0.0	W/1463202-1463528,1463649-1464090,1464148-1465324,1465448-1465622	AT1G05090.1 CDS dentin sialophosphoprotein-related [TAIR10] CDS gene_syn T7A14.3, T7A14_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product dentin sialophosphoprotein-related note dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT4G20720.1); Has 3598 Blast hits to 1413 proteins in 251 species: Archae - 2; Bacteria - 2631; Metazoa - 338; Fungi - 185; Plants - 102; Viruses - 1; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT1G05090.1p transcript_id AT1G05090.1 protein_id AT1G05090.1p transcript_id AT1G05090.1
At1g05100	chr1:001469679	0.0	W/1469679-1470698	AT1G05100.1 CDS mitogen-activated protein kinase kinase kinase 18 [TAIR10] CDS gene_syn MAPKKK18, T7A14.2, T7A14_2, mitogen-activated protein kinase kinase kinase 18 gene MAPKKK18 function member of MEKK subfamily go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product mitogen-activated protein kinase kinase kinase 18 note mitogen-activated protein kinase kinase kinase 18 (MAPKKK18); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 17 (TAIR:AT2G32510.1); Has 120072 Blast hits to 118882 proteins in 4556 species: Archae - 119; Bacteria - 13343; Metazoa - 45257; Fungi - 11715; Plants - 30592; Viruses - 483; Other Eukaryotes - 18563 (source: NCBI BLink). protein_id AT1G05100.1p transcript_id AT1G05100.1 protein_id AT1G05100.1p transcript_id AT1G05100.1
At1g05120	chr1:001471624	0.0	C/1471624-1471696,1471780-1471860,1471948-1472036,1472130-1472282,1472373-1472477,1472603-1472833,1473009-1473131,1473238-1473307,1473394-1473479,1473671-1473817,1473921-1473984,1474095-1474168,1474253-1474375,1474596-1475539,1475631-1475723,1476022-1476067	AT1G05120.1 CDS Helicase protein with RING/U-box domain [TAIR10] CDS go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function zinc ion binding|GO:0008270||IEA go_function DNA binding|GO:0003677||ISS go_function ATP binding|GO:0005524||ISS product Helicase protein with RING/U-box domain note Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink). protein_id AT1G05120.1p transcript_id AT1G05120.1 protein_id AT1G05120.1p transcript_id AT1G05120.1
AT1G05120	chr1:001471624	0.0	C/1471624-1471696,1471780-1471860,1471948-1472036,1472130-1472282,1472373-1472477,1472603-1472833,1473009-1473131,1473238-1473307,1473394-1473479,1473671-1473817,1473921-1473984,1474095-1474168,1474253-1474375,1474596-1475539,1475631-1475723,1476022-1476196	AT1G05120.2 AT1G05120.2 CDS Helicase protein with RING/U-box domain
At1g05135	chr1:001477500	0.0	C/1477500-1478821	AT1G05135.1 [TAIR10] pseudogene
At1g05136	chr1:001478923	0.0	W/1478923-1479063	AT1G05136.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05136.1p transcript_id AT1G05136.1 protein_id AT1G05136.1p transcript_id AT1G05136.1
At1g05140	chr1:001482681	0.0	W/1482681-1484006	AT1G05140.1 CDS Peptidase M50 family protein [TAIR10] CDS gene_syn YUP8H12.25, YUP8H12_25 go_component chloroplast|GO:0009507|18431481|IDA go_process proteolysis|GO:0006508||IEA go_function metalloendopeptidase activity|GO:0004222||IEA go_component plastid|GO:0009536|10891285|ISS go_process proteolysis|GO:0006508||ISS go_function metalloendopeptidase activity|GO:0004222||ISS product Peptidase M50 family protein note Peptidase M50 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS SERIN PROTEASE (TAIR:AT2G32480.1); Has 10190 Blast hits to 7652 proteins in 2240 species: Archae - 41; Bacteria - 6892; Metazoa - 13; Fungi - 4; Plants - 72; Viruses - 0; Other Eukaryotes - 3168 (source: NCBI BLink). protein_id AT1G05140.1p transcript_id AT1G05140.1 protein_id AT1G05140.1p transcript_id AT1G05140.1
At1g05150	chr1:001484280	0.0	C/1484280-1486706	AT1G05150.1 CDS Calcium-binding tetratricopeptide family protein [TAIR10] CDS gene_syn YUP8H12.24, YUP8H12_24 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product Calcium-binding tetratricopeptide family protein note Calcium-binding tetratricopeptide family protein; FUNCTIONS IN: binding, zinc ion binding, calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), EF-HAND 2 (InterPro:IPR018249), Zinc finger, ZZ-type (InterPro:IPR000433), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Calcium-binding tetratricopeptide family protein (TAIR:AT2G32450.1); Has 35451 Blast hits to 16647 proteins in 1701 species: Archae - 1586; Bacteria - 18304; Metazoa - 4207; Fungi - 680; Plants - 951; Viruses - 0; Other Eukaryotes - 9723 (source: NCBI BLink). protein_id AT1G05150.1p transcript_id AT1G05150.1 protein_id AT1G05150.1p transcript_id AT1G05150.1
At1g05160	chr1:001487640	0.0	C/1487640-1487730,1487812-1487936,1488019-1488125,1488220-1488298,1488390-1488479,1488561-1488824,1488909-1489386,1489590-1489828	AT1G05160.1 CDS cytochrome P450, family 88, subfamily A, polypeptide 3 [TAIR10] CDS gene_syn cytochrome P450, family 88, subfamily A, polypeptide 3, ATKAO1, CYP88A3, ENT-KAURENOIC ACID OXYDASE 1, KAO1, YUP8H12.23, YUP8H12_23 gene CYP88A3 function Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family. go_component endoplasmic reticulum|GO:0005783|11722763|IDA go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS go_function oxygen binding|GO:0019825|11172076|ISS go_function ent-kaurenoate oxidase activity|GO:0051777|11172076|IDA product cytochrome P450, family 88, subfamily A, polypeptide 3 note cytochrome P450, family 88, subfamily A, polypeptide 3 (CYP88A3); CONTAINS InterPro DOMAIN/s: Cytochrome P450, B-class (InterPro:IPR002397), Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: ent-kaurenoic acid hydroxylase 2 (TAIR:AT2G32440.2); Has 36129 Blast hits to 36053 proteins in 1833 species: Archae - 82; Bacteria - 8530; Metazoa - 11168; Fungi - 6175; Plants - 8031; Viruses - 6; Other Eukaryotes - 2137 (source: NCBI BLink). protein_id AT1G05160.1p transcript_id AT1G05160.1 protein_id AT1G05160.1p transcript_id AT1G05160.1
AT1G05160	chr1:001487640	0.0	C/1487640-1487730,1487812-1487936,1488019-1488125,1488220-1488298,1488390-1488479,1488561-1488824,1488909-1489386,1489590-1489828	AT1G05160.2 AT1G05160.2 CDS cytochrome P450, family 88, subfamily A, polypeptide 3
At1g05170	chr1:001491460	0.0	C/1491460-1491608,1491940-1492049,1492136-1492261,1492336-1492423,1492528-1492648,1492733-1492805,1492889-1492952,1493029-1493240,1493328-1493401,1493495-1493591,1493822-1493931	AT1G05170.2 CDS Galactosyltransferase family protein [TAIR10] CDS gene_syn YUP8H12.22, YUP8H12_22 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process protein amino acid glycosylation|GO:0006486||IEA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS product Galactosyltransferase family protein note Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT2G32430.1); Has 1305 Blast hits to 1290 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 665; Fungi - 0; Plants - 601; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). protein_id AT1G05170.2p transcript_id AT1G05170.2 protein_id AT1G05170.2p transcript_id AT1G05170.2
At1g05170	chr1:001491929	0.0	C/1491929-1492049,1492136-1492261,1492336-1492423,1492528-1492648,1492733-1492805,1492889-1492952,1493029-1493240,1493328-1493401,1493495-1493591,1493822-1493931	AT1G05170.1 CDS Galactosyltransferase family protein [TAIR10] CDS gene_syn YUP8H12.22, YUP8H12_22 go_component membrane|GO:0016020||IEA go_process protein amino acid glycosylation|GO:0006486||IEA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS product Galactosyltransferase family protein note Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT2G32430.1); Has 1301 Blast hits to 1292 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 677; Fungi - 0; Plants - 603; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G05170.1p transcript_id AT1G05170.1 protein_id AT1G05170.1p transcript_id AT1G05170.1
At1g05180	chr1:001498357	0.0	C/1498357-1498440,1498566-1498746,1498836-1498919,1499229-1499314,1499456-1499618,1499706-1499779,1499891-1499979,1500156-1500249,1500332-1500485,1500600-1500679,1500804-1500914,1501167-1501190,1501289-1501330,1501425-1501469	AT1G05180.2 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn AUXIN RESISTANT 1, AUXIN RESISTANT PROTEIN 1, AXR1, YUP8H12.21, YUP8H12_21 gene AXR1 function Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves. go_component nucleus|GO:0005634|9624055|IDA go_process DNA repair|GO:0006281|18434413|IMP go_process response to water deprivation|GO:0009414|8979397|IMP go_process auxin mediated signaling pathway|GO:0009734|7658471|IMP go_process leaf morphogenesis|GO:0009965|16971475|IGI go_process auxin homeostasis|GO:0010252|17655650|NAS go_process protein ubiquitination|GO:0016567|17655650|IGI go_function small protein activating enzyme activity|GO:0008641|9624055|IDA go_function small protein activating enzyme activity|GO:0008641||ISS product NAD(P)-binding Rossmann-fold superfamily protein note AUXIN RESISTANT 1 (AXR1); CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05180.2p transcript_id AT1G05180.2 protein_id AT1G05180.2p transcript_id AT1G05180.2
At1g05180	chr1:001498357	0.0	C/1498357-1498440,1498566-1498746,1498836-1498919,1499229-1499314,1499456-1499618,1499706-1499779,1499891-1499979,1500156-1500249,1500332-1500485,1500600-1500679,1500804-1500914,1501167-1501330,1501425-1501597,1501690-1501775	AT1G05180.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn AUXIN RESISTANT 1, AUXIN RESISTANT PROTEIN 1, AXR1, YUP8H12.21, YUP8H12_21 gene AXR1 function Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves. go_component nucleus|GO:0005634|9624055|IDA go_process DNA repair|GO:0006281|18434413|IMP go_process response to water deprivation|GO:0009414|8979397|IMP go_process auxin mediated signaling pathway|GO:0009734|7658471|IMP go_process leaf morphogenesis|GO:0009965|16971475|IGI go_process auxin homeostasis|GO:0010252|17655650|NAS go_process protein ubiquitination|GO:0016567|17655650|IGI go_function small protein activating enzyme activity|GO:0008641|9624055|IDA go_function small protein activating enzyme activity|GO:0008641||ISS product NAD(P)-binding Rossmann-fold superfamily protein note AUXIN RESISTANT 1 (AXR1); CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1); Has 6539 Blast hits to 5902 proteins in 1375 species: Archae - 158; Bacteria - 2625; Metazoa - 1326; Fungi - 867; Plants - 442; Viruses - 0; Other Eukaryotes - 1121 (source: NCBI BLink). protein_id AT1G05180.1p transcript_id AT1G05180.1 protein_id AT1G05180.1p transcript_id AT1G05180.1
At1g05180	chr1:001498524	0.0	C/1498524-1498746,1498836-1498919,1499229-1499314,1499456-1499618,1499706-1499779,1499891-1499979,1500156-1500249,1500332-1500485,1500600-1500679,1500804-1500914,1501167-1501190,1501289-1501330,1501425-1501469	AT1G05180.3 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn AUXIN RESISTANT 1, AUXIN RESISTANT PROTEIN 1, AXR1, YUP8H12.21, YUP8H12_21 gene AXR1 function Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves. go_component nucleus|GO:0005634|9624055|IDA go_process DNA repair|GO:0006281|18434413|IMP go_process response to water deprivation|GO:0009414|8979397|IMP go_process auxin mediated signaling pathway|GO:0009734|7658471|IMP go_process leaf morphogenesis|GO:0009965|16971475|IGI go_process auxin homeostasis|GO:0010252|17655650|NAS go_process protein ubiquitination|GO:0016567|17655650|IGI go_function small protein activating enzyme activity|GO:0008641|9624055|IDA go_function small protein activating enzyme activity|GO:0008641||ISS product NAD(P)-binding Rossmann-fold superfamily protein note AUXIN RESISTANT 1 (AXR1); CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05180.3p transcript_id AT1G05180.3 protein_id AT1G05180.3p transcript_id AT1G05180.3
At1g05190	chr1:001502515	0.0	C/1502515-1502851,1502962-1503261,1503704-1503738	AT1G05190.1 CDS Ribosomal protein L6 family [TAIR10] CDS gene_syn YUP8H12.20, YUP8H12_20, emb2394, embryo defective 2394 gene emb2394 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_function structural constituent of ribosome|GO:0003735||IEA go_function rRNA binding|GO:0019843||IEA go_component large ribosomal subunit|GO:0015934||ISS go_process translation|GO:0006412||ISS go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L6 family note embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226; Bacteria - 5468; Metazoa - 15; Fungi - 189; Plants - 125; Viruses - 0; Other Eukaryotes - 2475 (source: NCBI BLink). protein_id AT1G05190.1p transcript_id AT1G05190.1 protein_id AT1G05190.1p transcript_id AT1G05190.1
At1g05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.1 CDS glutamate receptor 3.4 [TAIR10] CDS gene_syn ATGLR3.4, GLR3.4, GLUR3, LIGAND-GATED CHANNEL-LIKE PROTEIN PRECURSOR, YUP8H12.19, YUP8H12_19, glutamate receptor 3.4 gene GLR3.4 function member of Putative ligand-gated ion channel subunit family go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS go_process response to light stimulus|GO:0009416|11379626|NAS go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS go_function protein binding|GO:0005515|19452453|IPI product glutamate receptor 3.4 note glutamate receptor 3.4 (GLR3.4); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2); Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47; Bacteria - 1309; Metazoa - 4441; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink). protein_id AT1G05200.1p transcript_id AT1G05200.1 protein_id AT1G05200.1p transcript_id AT1G05200.1
At1g05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.2 CDS glutamate receptor 3.4 [TAIR10] CDS gene_syn ATGLR3.4, GLR3.4, GLUR3, LIGAND-GATED CHANNEL-LIKE PROTEIN PRECURSOR, YUP8H12.19, YUP8H12_19, glutamate receptor 3.4 gene GLR3.4 function member of Putative ligand-gated ion channel subunit family go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS go_process response to light stimulus|GO:0009416|11379626|NAS go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS go_function protein binding|GO:0005515|19452453|IPI product glutamate receptor 3.4 note glutamate receptor 3.4 (GLR3.4); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05200.2p transcript_id AT1G05200.2 protein_id AT1G05200.2p transcript_id AT1G05200.2
AT1G05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.8 AT1G05200.8 CDS glutamate receptor 3.4
AT1G05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508514	AT1G05200.3 AT1G05200.3 CDS glutamate receptor 3.4
AT1G05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508514	AT1G05200.9 AT1G05200.9 CDS glutamate receptor 3.4
AT1G05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507949	AT1G05200.4 AT1G05200.4 CDS glutamate receptor 3.4
AT1G05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507949	AT1G05200.5 AT1G05200.5 CDS glutamate receptor 3.4
AT1G05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507852	AT1G05200.6 AT1G05200.6 CDS glutamate receptor 3.4
AT1G05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507852	AT1G05200.7 AT1G05200.7 CDS glutamate receptor 3.4
At1g05205	chr1:001509352	0.0	C/1509352-1509436,1509692-1509771,1510139-1510249	AT1G05205.1 CDS hexokinase-1 protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05205.1p transcript_id AT1G05205.1 protein_id AT1G05205.1p transcript_id AT1G05205.1
At1g05210	chr1:001510469	0.0	W/1510469-1510792,1511303-1511485	AT1G05210.1 CDS Transmembrane protein 97, predicted [TAIR10] CDS gene_syn YUP8H12.18, YUP8H12_18 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Transmembrane protein 97, predicted note Transmembrane protein 97, predicted; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: Transmembrane protein 97, predicted (TAIR:AT2G32380.1); Has 151 Blast hits to 151 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 14; Plants - 77; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G05210.1p transcript_id AT1G05210.1 protein_id AT1G05210.1p transcript_id AT1G05210.1
AT1G05210	chr1:001510469	0.0	W/1510469-1510792,1511303-1511485	AT1G05210.2 AT1G05210.2 CDS Transmembrane protein 97, predicted
AT1G05210	chr1:001510469	0.0	W/1510469-1510792,1511303-1511485	AT1G05210.3 AT1G05210.3 CDS Transmembrane protein 97, predicted
At1g05220	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.1 CDS Transmembrane protein 97, predicted [TAIR10] CDS gene_syn YUP8H12.17, YUP8H12_17 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Transmembrane protein 97, predicted note Transmembrane protein 97, predicted; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: Transmembrane protein 97, predicted (TAIR:AT1G05210.1); Has 151 Blast hits to 151 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 15; Plants - 75; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G05220.1p transcript_id AT1G05220.1 protein_id AT1G05220.1p transcript_id AT1G05220.1
At1g05220	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.2 CDS Transmembrane protein 97, predicted [TAIR10] CDS gene_syn YUP8H12.17, YUP8H12_17 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Transmembrane protein 97, predicted note Transmembrane protein 97, predicted; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: Transmembrane protein 97, predicted (TAIR:AT1G05210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05220.2p transcript_id AT1G05220.2 protein_id AT1G05220.2p transcript_id AT1G05220.2
AT1G05220	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.3 AT1G05220.3 CDS Transmembrane protein 97, predicted
AT1G05220	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.4 AT1G05220.4 CDS Transmembrane protein 97, predicted
AT1G05220	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.5 AT1G05220.5 CDS Transmembrane protein 97, predicted
AT1G05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.10 AT1G05230.10 CDS homeodomain GLABROUS 2
AT1G05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.12 AT1G05230.12 CDS homeodomain GLABROUS 2
At1g05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.1 CDS homeodomain GLABROUS 2 [TAIR10] CDS gene_syn HDG2, YUP8H12.16, YUP8H12_16, homeodomain GLABROUS 2 gene HDG2 function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process trichome morphogenesis|GO:0010090|19626137|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product homeodomain GLABROUS 2 note homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6110; Fungi - 222; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink). protein_id AT1G05230.1p transcript_id AT1G05230.1 protein_id AT1G05230.1p transcript_id AT1G05230.1
At1g05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.2 CDS homeodomain GLABROUS 2 [TAIR10] CDS gene_syn HDG2, YUP8H12.16, YUP8H12_16, homeodomain GLABROUS 2 gene HDG2 function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process trichome morphogenesis|GO:0010090|19626137|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product homeodomain GLABROUS 2 note homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8732 Blast hits to 8653 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6111; Fungi - 223; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink). protein_id AT1G05230.2p transcript_id AT1G05230.2 protein_id AT1G05230.2p transcript_id AT1G05230.2
At1g05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.4 CDS homeodomain GLABROUS 2 [TAIR10] CDS gene_syn HDG2, YUP8H12.16, YUP8H12_16, homeodomain GLABROUS 2 gene HDG2 function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process trichome morphogenesis|GO:0010090|19626137|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product homeodomain GLABROUS 2 note homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1). protein_id AT1G05230.4p transcript_id AT1G05230.4 protein_id AT1G05230.4p transcript_id AT1G05230.4
AT1G05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.5 AT1G05230.5 CDS homeodomain GLABROUS 2
AT1G05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.6 AT1G05230.6 CDS homeodomain GLABROUS 2
AT1G05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.7 AT1G05230.7 CDS homeodomain GLABROUS 2
AT1G05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.8 AT1G05230.8 CDS homeodomain GLABROUS 2
AT1G05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.9 AT1G05230.9 CDS homeodomain GLABROUS 2
At1g05230	chr1:001513388	0.0	C/1513388-1513744,1513831-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.3 CDS homeodomain GLABROUS 2 [TAIR10] CDS gene_syn HDG2, YUP8H12.16, YUP8H12_16, homeodomain GLABROUS 2 gene HDG2 function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process trichome morphogenesis|GO:0010090|19626137|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product homeodomain GLABROUS 2 note homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05230.3p transcript_id AT1G05230.3 protein_id AT1G05230.3p transcript_id AT1G05230.3
AT1G05230	chr1:001513804	0.0	C/1513804-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.11 AT1G05230.11 CDS homeodomain GLABROUS 2
At1g05240	chr1:001521202	0.0	W/1521202-1521414,1521504-1521689,1521783-1521948,1522035-1522447	AT1G05240.1 CDS Peroxidase superfamily protein [TAIR10] CDS gene_syn YUP8H12.15 go_process response to oxidative stress|GO:0006979||IEA go_process oxidation reduction|GO:0055114||IEA go_function peroxidase activity|GO:0004601||IEA go_function heme binding|GO:0020037||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_function peroxidase activity|GO:0004601||ISS product Peroxidase superfamily protein note Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: plant-type cell wall; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G05250.1); Has 4227 Blast hits to 4200 proteins in 227 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 50; Plants - 4133; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). protein_id AT1G05240.1p transcript_id AT1G05240.1 protein_id AT1G05240.1p transcript_id AT1G05240.1
At1g05250	chr1:001525924	0.0	C/1525924-1526336,1526423-1526588,1526682-1526867,1526957-1527169	AT1G05250.1 CDS Peroxidase superfamily protein [TAIR10] CDS gene_syn YUP8H12.14, YUP8H12_14 go_component endomembrane system|GO:0012505||IEA go_process response to oxidative stress|GO:0006979||IEA go_process oxidation reduction|GO:0055114||IEA go_function peroxidase activity|GO:0004601||IEA go_function heme binding|GO:0020037||IEA go_function peroxidase activity|GO:0004601||ISS product Peroxidase superfamily protein note Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G05240.1); Has 4227 Blast hits to 4200 proteins in 227 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 50; Plants - 4133; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). protein_id AT1G05250.1p transcript_id AT1G05250.1 protein_id AT1G05250.1p transcript_id AT1G05250.1
At1g05260	chr1:001529827	0.0	W/1529827-1530039,1530148-1530336,1530430-1530592,1530856-1531271	AT1G05260.1 CDS Peroxidase superfamily protein [TAIR10] CDS gene_syn PEROXIDASE PRECURSOR, RARE COLD INDUCIBLE GENE 3, RCI3, RCI3A, YUP8H12.13, YUP8H12_13 gene RCI3 function Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. go_component endoplasmic reticulum|GO:0005783|12366797|ISS go_process response to desiccation|GO:0009269|12366797|IMP go_process response to cold|GO:0009409|12366797|IEP go_process hyperosmotic salinity response|GO:0042538|12366797|IMP go_function peroxidase activity|GO:0004601|12366797|IDA go_function peroxidase activity|GO:0004601||ISS product Peroxidase superfamily protein note RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). protein_id AT1G05260.1p transcript_id AT1G05260.1 protein_id AT1G05260.1p transcript_id AT1G05260.1
At1g05270	chr1:001531806	0.0	C/1531806-1531934,1532019-1532130,1532264-1532364,1532484-1532597,1532730-1532834,1532917-1533000,1533352-1533411,1533503-1533550,1533943-1534305	AT1G05270.1 CDS TraB family protein [TAIR10] CDS gene_syn YUP8H12.12, YUP8H12_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product TraB family protein note TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT2G32340.1); Has 779 Blast hits to 750 proteins in 262 species: Archae - 153; Bacteria - 256; Metazoa - 121; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). protein_id AT1G05270.1p transcript_id AT1G05270.1 protein_id AT1G05270.1p transcript_id AT1G05270.1
At1g05280	chr1:001535079	0.0	C/1535079-1535198,1535585-1535887,1535975-1536211,1536297-1536708,1537011-1537414	AT1G05280.1 CDS ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) [TAIR10] CDS gene_syn YUP8H12.11, YUP8H12_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Protein of unknown function (DUF604) note Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G15240.1); Has 523 Blast hits to 513 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 172; Plants - 273; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G05280.1p transcript_id AT1G05280.1 protein_id AT1G05280.1p transcript_id AT1G05280.1
AT1G05280	chr1:001535540	0.0	C/1535540-1535887,1535975-1536211,1536297-1536708,1537011-1537414	AT1G05280.2 AT1G05280.2 CDS ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604)
At1g05290	chr1:001539152	0.0	C/1539152-1539296,1539384-1539694,1539782-1539970,1540082-1540546	AT1G05290.1 CDS CCT motif family protein [TAIR10] CDS gene_syn YUP8H12.10, YUP8H12_10 go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product CCT motif family protein note CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT3G21880.1); Has 1471 Blast hits to 1456 proteins in 101 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1426; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). protein_id AT1G05290.1p transcript_id AT1G05290.1 protein_id AT1G05290.1p transcript_id AT1G05290.1
At1g05291	chr1:001541348	0.0	C/1541348-1541627,1541912-1542114,1542192-1542323	AT1G05291.1 CDS GPI inositol-deacylase C, putative (DUF1218) [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1218) note Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT2G32280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05291.1p transcript_id AT1G05291.1 protein_id AT1G05291.1p transcript_id AT1G05291.1
At1g05300	chr1:001545258	0.0	C/1545258-1545563,1546188-1546337,1547083-1547709	AT1G05300.1 CDS zinc transporter 5 precursor [TAIR10] CDS gene_syn YUP8H12.8, YUP8H12_8, ZIP5, zinc transporter 5 precursor gene ZIP5 function member of Fe(II) transporter isolog family go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process cation transport|GO:0006812|11500563|ISS go_process cation transport|GO:0006812||ISS go_process response to zinc ion|GO:0010043|13129917|IEP go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS go_function cation transmembrane transporter activity|GO:0008324||ISS go_function metal ion transmembrane transporter activity|GO:0046873||ISS product zinc transporter 5 precursor note zinc transporter 5 precursor (ZIP5); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 3 precursor (TAIR:AT2G32270.1); Has 1970 Blast hits to 1847 proteins in 292 species: Archae - 0; Bacteria - 139; Metazoa - 489; Fungi - 625; Plants - 507; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink). protein_id AT1G05300.1p transcript_id AT1G05300.1 protein_id AT1G05300.1p transcript_id AT1G05300.1
At1g05300	chr1:001546161	0.0	C/1546161-1546337,1547083-1547709	AT1G05300.2 CDS zinc transporter 5 precursor [TAIR10] CDS gene_syn YUP8H12.8, YUP8H12_8, ZIP5, zinc transporter 5 precursor gene ZIP5 function member of Fe(II) transporter isolog family go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process cation transport|GO:0006812|11500563|ISS go_process cation transport|GO:0006812||ISS go_process response to zinc ion|GO:0010043|13129917|IEP go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS go_function cation transmembrane transporter activity|GO:0008324||ISS go_function metal ion transmembrane transporter activity|GO:0046873||ISS product zinc transporter 5 precursor note zinc transporter 5 precursor (ZIP5); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 3 precursor (TAIR:AT2G32270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05300.2p transcript_id AT1G05300.2 protein_id AT1G05300.2p transcript_id AT1G05300.2
At1g05310	chr1:001550615	0.0	C/1550615-1550771,1550861-1551120,1551212-1551418,1551799-1551970,1552049-1552434	AT1G05310.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn YUP8H12.7, YUP8H12_7 go_component cell wall|GO:0005618||IEA go_component endomembrane system|GO:0012505||IEA go_process cell wall modification|GO:0042545||IEA go_function pectinesterase activity|GO:0030599||IEA go_component plant-type cell wall|GO:0009505||ISS go_function pectinesterase activity|GO:0030599||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 4576 Blast hits to 3466 proteins in 439 species: Archae - 11; Bacteria - 724; Metazoa - 994; Fungi - 355; Plants - 1773; Viruses - 6; Other Eukaryotes - 713 (source: NCBI BLink). protein_id AT1G05310.1p transcript_id AT1G05310.1 protein_id AT1G05310.1p transcript_id AT1G05310.1
At1g05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.1 CDS myosin heavy chain, embryonic smooth protein [TAIR10] CDS gene_syn YUP8H12.6, YUP8H12_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706; Bacteria - 62589; Metazoa - 106546; Fungi - 19914; Plants - 13918; Viruses - 1287; Other Eukaryotes - 59690 (source: NCBI BLink). protein_id AT1G05320.1p transcript_id AT1G05320.1 protein_id AT1G05320.1p transcript_id AT1G05320.1
At1g05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.2 CDS myosin heavy chain, embryonic smooth protein [TAIR10] CDS gene_syn YUP8H12.6, YUP8H12_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706; Bacteria - 62589; Metazoa - 106546; Fungi - 19914; Plants - 13918; Viruses - 1287; Other Eukaryotes - 59690 (source: NCBI BLink). protein_id AT1G05320.2p transcript_id AT1G05320.2 protein_id AT1G05320.2p transcript_id AT1G05320.2
At1g05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.3 CDS myosin heavy chain, embryonic smooth protein [TAIR10] CDS gene_syn YUP8H12.6, YUP8H12_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267444 Blast hits to 119656 proteins in 3886 species: Archae - 3699; Bacteria - 62432; Metazoa - 106542; Fungi - 19875; Plants - 13918; Viruses - 1288; Other Eukaryotes - 59690 (source: NCBI BLink). protein_id AT1G05320.3p transcript_id AT1G05320.3 protein_id AT1G05320.3p transcript_id AT1G05320.3
AT1G05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.4 AT1G05320.4 CDS myosin heavy chain, embryonic smooth protein
AT1G05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.7 AT1G05320.7 CDS myosin heavy chain, embryonic smooth protein
AT1G05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.8 AT1G05320.8 CDS myosin heavy chain, embryonic smooth protein
AT1G05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.9 AT1G05320.9 CDS myosin heavy chain, embryonic smooth protein
AT1G05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557109	AT1G05320.5 AT1G05320.5 CDS myosin heavy chain, embryonic smooth protein
AT1G05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557109	AT1G05320.6 AT1G05320.6 CDS myosin heavy chain, embryonic smooth protein
At1g05330	chr1:001558170	0.0	W/1558170-1558583	AT1G05330.1 CDS hypothetical protein [TAIR10] CDS gene_syn YUP8H12.5, YUP8H12_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05330.1p transcript_id AT1G05330.1 protein_id AT1G05330.1p transcript_id AT1G05330.1
At1g05340	chr1:001559079	0.0	C/1559079-1559124,1559376-1559517,1559616-1559646	AT1G05340.1 CDS cysteine-rich TM module stress tolerance protein [TAIR10] CDS gene_syn YUP8H12.4, YUP8H12_4 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 189 Blast hits to 189 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 21; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05340.1p transcript_id AT1G05340.1 protein_id AT1G05340.1p transcript_id AT1G05340.1
At1g05350	chr1:001560891	0.0	C/1560891-1561039,1561143-1561195,1561313-1561431,1561537-1561623,1561744-1561818,1561953-1562027,1562205-1562287,1562369-1562405,1562578-1562733,1563012-1563080,1563165-1563293,1563390-1563503,1563582-1563650,1563925-1564005	AT1G05350.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn YUP8H12.3, YUP8H12_3 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA go_function cofactor binding|GO:0048037||IEA go_component cellular_component|GO:0005575||ND go_function catalytic activity|GO:0003824||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: SUMO-activating enzyme 2 (TAIR:AT2G21470.1); Has 12729 Blast hits to 12531 proteins in 2437 species: Archae - 211; Bacteria - 8204; Metazoa - 1010; Fungi - 713; Plants - 367; Viruses - 0; Other Eukaryotes - 2224 (source: NCBI BLink). protein_id AT1G05350.1p transcript_id AT1G05350.1 protein_id AT1G05350.1p transcript_id AT1G05350.1
At1g05360	chr1:001564816	0.0	W/1564816-1564861,1565152-1565363,1565622-1565700,1565818-1566105,1566342-1566490,1566612-1566728,1566826-1567005,1567099-1567278	AT1G05360.1 CDS vacuole membrane-like protein [TAIR10] CDS gene_syn YUP8H12.2, YUP8H12_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G14950.1); Has 332 Blast hits to 326 proteins in 115 species: Archae - 0; Bacteria - 11; Metazoa - 174; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). protein_id AT1G05360.1p transcript_id AT1G05360.1 protein_id AT1G05360.1p transcript_id AT1G05360.1
AT1G05360	chr1:001565580	0.0	W/1565580-1565700,1565818-1566105,1566342-1566490,1566612-1566728,1566826-1567005,1567099-1567278	AT1G05360.2 AT1G05360.2 CDS vacuole membrane-like protein
AT1G05360	chr1:001565580	0.0	W/1565580-1565700,1565818-1566105,1566342-1566490,1566612-1566728,1566826-1567005,1567099-1567278	AT1G05360.3 AT1G05360.3 CDS vacuole membrane-like protein
At1g05370	chr1:001569418	0.0	C/1569418-1570086,1570246-1570379,1570988-1571076,1571158-1571204,1571296-1571384,1571949-1572066,1572173-1572280	AT1G05370.1 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn YUP8H12.1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT3G22410.1); Has 487 Blast hits to 487 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 189; Plants - 251; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). protein_id AT1G05370.1p transcript_id AT1G05370.1 protein_id AT1G05370.1p transcript_id AT1G05370.1
At1g05380	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.1 CDS Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [TAIR10] CDS gene_syn T25N20.3, T25N20_3 go_component nucleus|GO:0005634|9836641|IC go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677|9836641|ISS go_function DNA binding|GO:0003677||ISS product Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein note Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1); Has 4682 Blast hits to 3960 proteins in 222 species: Archae - 3; Bacteria - 7; Metazoa - 2969; Fungi - 456; Plants - 787; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink). protein_id AT1G05380.1p transcript_id AT1G05380.1 protein_id AT1G05380.1p transcript_id AT1G05380.1
At1g05380	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.2 CDS Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [TAIR10] CDS gene_syn T25N20.3, T25N20_3 go_component nucleus|GO:0005634|9836641|IC go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677|9836641|ISS go_function DNA binding|GO:0003677||ISS product Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein note Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05380.2p transcript_id AT1G05380.2 protein_id AT1G05380.2p transcript_id AT1G05380.2
AT1G05380	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.3 AT1G05380.3 CDS Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
AT1G05385	chr1:001582747	0.0	C/1582747-1582884,1582965-1583264	AT1G05385.2 AT1G05385.2 CDS photosystem II 11 kDa protein-related
At1g05385	chr1:001582747	0.0	C/1582747-1582884,1582965-1583347,1583570-1583648	AT1G05385.1 CDS photosystem II 11 kDa protein-related [TAIR10] CDS gene_syn LOW PSII ACCUMULATION 19, LPA19, Psb27-H1 gene LPA19 function Encodes a Psb27 homolog involved in photosystem II biogenesis. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid lumen|GO:0009543|20444695|IDA go_process photosystem II assembly|GO:0010207|20444695|IMP go_function molecular_function|GO:0003674||ND product photosystem II 11 kDa protein-related note LOW PSII ACCUMULATION 19 (LPA19); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II assembly; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 214 Blast hits to 214 proteins in 55 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). protein_id AT1G05385.1p transcript_id AT1G05385.1 protein_id AT1G05385.1p transcript_id AT1G05385.1
At1g05390	chr1:001583772	0.0	C/1583772-1583845	AT1G05390.1 [TAIR10] tRNA gene_syn 51807.TRNA-ASN-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Asn (anticodon: GTT) transcript_id AT1G05390.1
At1g05400	chr1:001584746	0.0	W/1584746-1585060,1585161-1585244	AT1G05400.1 CDS hypothetical protein [TAIR10] CDS gene_syn T25N20.5, T25N20_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 31 Blast hits to 31 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05400.1p transcript_id AT1G05400.1 protein_id AT1G05400.1p transcript_id AT1G05400.1
At1g05400	chr1:001584746	0.0	W/1584746-1585060,1585161-1585244	AT1G05400.2 CDS hypothetical protein [TAIR10] CDS gene_syn T25N20.5, T25N20_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 31 Blast hits to 31 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05400.2p transcript_id AT1G05400.2 protein_id AT1G05400.2p transcript_id AT1G05400.2
At1g05410	chr1:001585504	0.0	C/1585504-1585931,1586030-1586090,1586158-1586723,1586908-1587124,1587206-1587268	AT1G05410.2 CDS CDPK adapter, putative (DUF1423) [TAIR10] CDS gene_syn T25N20.6, T25N20_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1423) note Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05410.2p transcript_id AT1G05410.2 protein_id AT1G05410.2p transcript_id AT1G05410.2
At1g05410	chr1:001585504	0.0	C/1585504-1585931,1586030-1586090,1586158-1586723,1586908-1587268	AT1G05410.1 CDS CDPK adapter, putative (DUF1423) [TAIR10] CDS gene_syn T25N20.6, T25N20_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1423) note Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 192 Blast hits to 189 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 10; Plants - 173; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G05410.1p transcript_id AT1G05410.1 protein_id AT1G05410.1p transcript_id AT1G05410.1
AT1G05420	chr1:001590025	0.0	W/1590025-1590753	AT1G05420.2 AT1G05420.2 CDS ovate family protein 12
At1g05420	chr1:001590073	0.0	W/1590073-1590753	AT1G05420.1 CDS ovate family protein 12 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ATOFP12, OFP12, T25N20.7, T25N20_7, ovate family protein 12 gene OFP12 go_process biological_process|GO:0008150||ND product ovate family protein 12 note ovate family protein 12 (OFP12); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 16 (TAIR:AT2G32100.1); Has 358 Blast hits to 358 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05420.1p transcript_id AT1G05420.1 protein_id AT1G05420.1p transcript_id AT1G05420.1
At1g05430	chr1:001594227	0.0	C/1594227-1594430,1594540-1594807,1594923-1595043,1595133-1595186,1595321-1595426,1595675-1595731	AT1G05430.1 CDS hypothetical protein [TAIR10] CDS gene_syn T25N20.8, T25N20_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05430.1p transcript_id AT1G05430.1 protein_id AT1G05430.1p transcript_id AT1G05430.1
At1g05440	chr1:001596374	0.0	C/1596374-1596667,1596903-1597052,1597133-1597870	AT1G05440.1 CDS C-8 sterol isomerases [TAIR10] CDS gene_syn T25N20.9, T25N20_9 go_component endoplasmic reticulum|GO:0005783||IEA go_process ergosterol biosynthetic process|GO:0006696||IEA go_function C-8 sterol isomerase activity|GO:0000247||IEA product C-8 sterol isomerases note C-8 sterol isomerases; FUNCTIONS IN: C-8 sterol isomerase activity; INVOLVED IN: ergosterol biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ERG2/sigma1 receptor-like (InterPro:IPR006716); Has 118 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 4; Plants - 21; Viruses - 1; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G05440.1p transcript_id AT1G05440.1 protein_id AT1G05440.1p transcript_id AT1G05440.1
At1g05450	chr1:001600004	0.0	W/1600004-1600334,1600507-1600533,1600642-1600701,1600809-1600862,1600941-1601086	AT1G05450.2 CDS Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [TAIR10] CDS gene_syn T25N20.10, T25N20_10 function Encodes a Protease inhibitor/seed storage/LTP family protein go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein note Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05450.2p transcript_id AT1G05450.2 protein_id AT1G05450.2p transcript_id AT1G05450.2
At1g05450	chr1:001600860	0.0	W/1600860-1600862,1600941-1601090	AT1G05450.1 CDS Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [TAIR10] CDS gene_syn T25N20.10, T25N20_10 function Encodes a Protease inhibitor/seed storage/LTP family protein go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein note Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05450.1p transcript_id AT1G05450.1 protein_id AT1G05450.1p transcript_id AT1G05450.1
AT1G05460	chr1:001601357	0.0	C/1601357-1601522,1601763-1601962,1602053-1603507,1603623-1603787,1603876-1604658	AT1G05460.2 AT1G05460.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g05460	chr1:001601357	0.0	C/1601357-1601962,1602053-1603507,1603623-1603787,1603876-1604658	AT1G05460.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn SDE3, SILENCING DEFECTIVE, T25N20.11, T25N20_11 gene SDE3 function Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. go_component cellular_component|GO:0005575||ND go_process virus induced gene silencing|GO:0009616|11296239|IMP go_function RNA helicase activity|GO:0003724|11296239|ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note SILENCING DEFECTIVE (SDE3); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: virus induced gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, UvrD/REP type (InterPro:IPR000212); BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 8827 Blast hits to 7137 proteins in 1206 species: Archae - 219; Bacteria - 2402; Metazoa - 1784; Fungi - 1431; Plants - 666; Viruses - 219; Other Eukaryotes - 2106 (source: NCBI BLink). protein_id AT1G05460.1p transcript_id AT1G05460.1 protein_id AT1G05460.1p transcript_id AT1G05460.1
At1g05470	chr1:001608558	0.0	C/1608558-1608780,1608868-1609016,1609099-1609207,1609316-1609509,1609602-1610397,1610486-1610590,1610674-1610761,1610854-1610925,1611074-1611161,1611262-1611291	AT1G05470.1 CDS DNAse I-like superfamily protein [TAIR10] CDS gene_syn COTYLEDON VASCULAR PATTERN 2, CVP2, T25N20.12, T25N20_12 gene CVP2 function Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays. go_component cellular_component|GO:0005575||ND go_process xylem and phloem pattern formation|GO:0010051|10559439|IMP go_process response to abscisic acid stimulus|GO:0009737|15100402|IMP go_process procambium histogenesis|GO:0010067|15100402|IMP go_process leaf vascular tissue pattern formation|GO:0010305|15100402|IMP go_process leaf vascular tissue pattern formation|GO:0010305|19473324|IGI go_process cotyledon vascular tissue pattern formation|GO:0010588|15100402|IMP go_process inositol trisphosphate metabolic process|GO:0032957|15100402|IMP go_process inositol phosphate dephosphorylation|GO:0046855|15100402|IMP go_process inositol phosphate-mediated signaling|GO:0048016|15100402|IC go_function hydrolase activity|GO:0016787||ISS go_function inositol trisphosphate phosphatase activity|GO:0046030|15100402|IMP product DNAse I-like superfamily protein note COTYLEDON VASCULAR PATTERN 2 (CVP2); FUNCTIONS IN: hydrolase activity, inositol trisphosphate phosphatase activity; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: CVP2 like 1 (TAIR:AT2G32010.2); Has 2640 Blast hits to 2079 proteins in 233 species: Archae - 0; Bacteria - 28; Metazoa - 855; Fungi - 611; Plants - 735; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink). protein_id AT1G05470.1p transcript_id AT1G05470.1 protein_id AT1G05470.1p transcript_id AT1G05470.1
AT1G05470	chr1:001608558	0.0	C/1608558-1608780,1608868-1609016,1609099-1609207,1609316-1609509,1609602-1610397,1610486-1610590,1610674-1610761,1610854-1610925,1611074-1611161,1611262-1611291	AT1G05470.2 AT1G05470.2 CDS DNAse I-like superfamily protein
At1g05490	chr1:001618795	0.0	C/1618795-1620729,1620817-1620966,1621048-1623195	AT1G05490.1 CDS chromatin remodeling 31 [TAIR10] CDS gene_syn T25N20.14, chr31, chromatin remodeling 31 gene chr31 go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_process biological_process|GO:0008150||ND product chromatin remodeling 31 note chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 40 (TAIR:AT3G24340.1); Has 38115 Blast hits to 26256 proteins in 2107 species: Archae - 207; Bacteria - 10267; Metazoa - 11226; Fungi - 5719; Plants - 1929; Viruses - 244; Other Eukaryotes - 8523 (source: NCBI BLink). protein_id AT1G05490.1p transcript_id AT1G05490.1 protein_id AT1G05490.1p transcript_id AT1G05490.1
At1g05500	chr1:001625098	0.0	W/1625098-1625202,1625285-1625389,1625527-1625577,1625698-1625818,1626231-1626352,1626510-1626611,1626842-1626916,1627329-1627408,1627604-1627754,1627828-1628058,1628160-1628438,1628529-1628642,1628794-1628940	AT1G05500.1 CDS Calcium-dependent lipid-binding (CaLB domain) family protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, ATSYTE, NTMC2T2.1, NTMC2TYPE2.1, SYNAPTOTAGMIN HOMOLOG E, SYT5, SYTE, T25N20.15, synaptotagmin 5 gene NTMC2T2.1 function Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. go_component plasma membrane|GO:0005886|17317660|IDA go_component endomembrane system|GO:0012505|20498364|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Calcium-dependent lipid-binding (CaLB domain) family protein note NTMC2T2.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G11100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05500.1p transcript_id AT1G05500.1 protein_id AT1G05500.1p transcript_id AT1G05500.1
AT1G05500	chr1:001626281	0.0	W/1626281-1626352,1626510-1626611,1626842-1626916,1627329-1627408,1627604-1627754,1627828-1628058,1628160-1628438,1628529-1628642,1628794-1628940	AT1G05500.2 AT1G05500.2 CDS Calcium-dependent lipid-binding (CaLB domain) family protein
At1g05510	chr1:001629527	0.0	W/1629527-1629672,1630016-1630419,1630515-1630690	AT1G05510.1 CDS naphthalene 1,2-dioxygenase subunit alpha (DUF1264) [TAIR10] CDS gene_syn T25N20.16 function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. go_component cellular_component|GO:0005575||ND go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1264) note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1264) (TAIR:AT2G31985.1); Has 295 Blast hits to 295 proteins in 126 species: Archae - 0; Bacteria - 124; Metazoa - 0; Fungi - 67; Plants - 102; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G05510.1p transcript_id AT1G05510.1 protein_id AT1G05510.1p transcript_id AT1G05510.1
At1g05520	chr1:001631126	0.0	C/1631126-1631272,1631390-1631494,1631579-1631842,1631916-1632077,1632344-1632421,1632972-1633053,1633132-1633304,1633400-1633475,1633619-1633761,1633934-1634095,1634604-1634777,1634918-1635703	AT1G05520.1 CDS Sec23/Sec24 protein transport family protein [TAIR10] CDS gene_syn T25N20.17 go_component COPII vesicle coat|GO:0030127||IEA go_function zinc ion binding|GO:0008270||IEA go_process transport|GO:0006810||ISS go_process response to salt stress|GO:0009651|11351099|IEP go_function transporter activity|GO:0005215||ISS product Sec23/Sec24 protein transport family protein note Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: response to salt stress, transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 1391 Blast hits to 1379 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 486; Fungi - 398; Plants - 318; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink). protein_id AT1G05520.1p transcript_id AT1G05520.1 protein_id AT1G05520.1p transcript_id AT1G05520.1
At1g05530	chr1:001636496	0.0	C/1636496-1637863	AT1G05530.1 CDS UDP-glucosyl transferase 75B2 [TAIR10] CDS gene_syn T25N20.18, UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2, UGT2, UGT75B2 gene UGT75B2 function Encodes a protein with glucosyltransferase activity with high sequence homology to UGT1 (AT1G05560). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT2 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. go_process metabolic process|GO:0008152||IEA go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function UDP-glucosyltransferase activity|GO:0035251|11283335|ISS go_function UDP-glucosyltransferase activity|GO:0035251|11641410|IDA product UDP-glucosyl transferase 75B2 note UDP-glucosyl transferase 75B2 (UGT75B2); FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, abscisic acid glucosyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyltransferase 75B1 (TAIR:AT1G05560.1); Has 7198 Blast hits to 7135 proteins in 463 species: Archae - 0; Bacteria - 427; Metazoa - 1573; Fungi - 32; Plants - 5007; Viruses - 111; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G05530.1p transcript_id AT1G05530.1 protein_id AT1G05530.1p transcript_id AT1G05530.1
At1g05540	chr1:001639348	0.0	W/1639348-1639401,1639587-1640314,1640386-1640707	AT1G05540.1 CDS hypothetical protein (DUF295) [TAIR10] CDS gene_syn T25N20.19 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF295) note Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G30160.2); Has 218 Blast hits to 208 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05540.1p transcript_id AT1G05540.1 protein_id AT1G05540.1p transcript_id AT1G05540.1
AT1G05540	chr1:001639348	0.0	W/1639348-1639401,1639587-1640318	AT1G05540.2 AT1G05540.2 CDS hypothetical protein (DUF295)
At1g05550	chr1:001641229	0.0	C/1641229-1641559,1641650-1641791,1641875-1642373,1643141-1643174,1643469-1643510,1643639-1643748	AT1G05550.3 CDS hypothetical protein (DUF295) [TAIR10] CDS gene_syn T25N20.20 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF295) note Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1). protein_id AT1G05550.3p transcript_id AT1G05550.3 protein_id AT1G05550.3p transcript_id AT1G05550.3
At1g05550	chr1:001641717	0.0	C/1641717-1642373,1642582-1642593	AT1G05550.2 CDS hypothetical protein (DUF295) [TAIR10] CDS gene_syn T25N20.20 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF295) note Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1); Has 175 Blast hits to 175 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05550.2p transcript_id AT1G05550.2 protein_id AT1G05550.2p transcript_id AT1G05550.2
At1g05550	chr1:001641717	0.0	C/1641717-1642373,1642586-1642639	AT1G05550.1 CDS hypothetical protein (DUF295) [TAIR10] CDS gene_syn T25N20.20 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF295) note Protein of unknown function (DUF295); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1); Has 175 Blast hits to 175 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05550.1p transcript_id AT1G05550.1 protein_id AT1G05550.1p transcript_id AT1G05550.1
AT1G05550	chr1:001641717	0.0	C/1641717-1642373,1642586-1642639	AT1G05550.4 AT1G05550.4 CDS hypothetical protein (DUF295)
At1g05560	chr1:001645674	0.0	C/1645674-1647083	AT1G05560.1 CDS UDP-glucosyltransferase 75B1 [TAIR10] CDS gene_syn T25N20.21, UDP-GLUCOSE TRANSFERASE 1, UDP-GLUCOSYLTRANSFERASE, UDP-glucosyltransferase 75B1, UGT1, UGT75B1 gene UGT75B1 function A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques. go_component phragmoplast|GO:0009524|11283335|IDA go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP go_process cell plate formation involved in plant-type cell wall biogenesis|GO:0009920|11283335|TAS go_process response to cyclopentenone|GO:0010583|18334669|IEP go_process para-aminobenzoic acid metabolic process|GO:0046482|18385129|IDA go_function UDP-glycosyltransferase activity|GO:0008194|11283335|ISS go_function UDP-glycosyltransferase activity|GO:0008194|11283335|TAS go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function UDP-glucosyltransferase activity|GO:0035251|11641410|IDA go_function UDP-glucosyltransferase activity|GO:0035251|16307367|TAS go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA go_function UDP-glucose:4-aminobenzoate acylglucosyltransferase activity|GO:0080002|18385129|IDA product UDP-glucosyltransferase 75B1 note UDP-glucosyltransferase 75B1 (UGT75B1); CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 75B2 (TAIR:AT1G05530.1); Has 7961 Blast hits to 7890 proteins in 509 species: Archae - 0; Bacteria - 579; Metazoa - 2125; Fungi - 39; Plants - 5043; Viruses - 112; Other Eukaryotes - 63 (source: NCBI BLink). protein_id AT1G05560.1p transcript_id AT1G05560.1 protein_id AT1G05560.1p transcript_id AT1G05560.1
AT1G05560	chr1:001645674	0.0	C/1645674-1647233	AT1G05560.2 AT1G05560.2 CDS UDP-glucosyltransferase 75B1
At1g05562	chr1:001645875	0.0	W/1645875-1647162	AT1G05562.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G05560 product other RNA transcript_id AT1G05562.1
At1g05570	chr1:001647880	0.0	C/1647880-1648128,1648227-1648412,1648499-1648549,1648626-1649426,1649531-1649760,1649850-1649962,1650044-1650127,1650216-1650334,1650457-1650576,1650728-1650887,1650982-1651171,1651256-1651324,1651437-1651562,1651648-1651757,1651833-1651984,1652114-1652243,1652327-1652424,1652514-1652637,1652719-1652879,1652967-1653051,1653823-1653917,1654019-1654156,1654282-1654368,1654451-1654500,1654588-1654669,1654832-1654892,1654976-1655028,1655120-1655162,1655286-1655457,1655631-1655748,1655830-1655949,1656201-1656294,1656391-1656467,1656555-1656692,1656795-1656921,1657067-1657158,1657263-1657355,1657440-1657556,1657641-1657751,1657888-1657981,1658084-1658205,1658299-1658399,1658491-1658677	AT1G05570.2 CDS callose synthase 1 [TAIR10] CDS gene_syn ATGSL06, ATGSL6, CALS1, F3F20.1, F3F20_1, GLUCAN SYNTHASE-LIKE 6, GSL06, GSL6, callose synthase 1 gene CALS1 function Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48. go_component 1,3-beta-glucan synthase complex|GO:0000148|11283334|ISS go_component cell plate|GO:0009504|11283334|IDA go_process 1,3-beta-glucan biosynthetic process|GO:0006075|11283334|ISS go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product callose synthase 1 note callose synthase 1 (CALS1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440), Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2). protein_id AT1G05570.2p transcript_id AT1G05570.2 protein_id AT1G05570.2p transcript_id AT1G05570.2
At1g05570	chr1:001647880	0.0	C/1647880-1648128,1648227-1648412,1648499-1648549,1648626-1649426,1649531-1649760,1649850-1649962,1650044-1650127,1650216-1650334,1650457-1650576,1650728-1650887,1650982-1651171,1651256-1651324,1651437-1651562,1651648-1651757,1651833-1651984,1652114-1652243,1652327-1652424,1652514-1652637,1652719-1652879,1652967-1653051,1653823-1653917,1654019-1654156,1654282-1654368,1654451-1654500,1654588-1654669,1654832-1654892,1654976-1655028,1655120-1655457,1655631-1655748,1655830-1655949,1656201-1656294,1656391-1656467,1656555-1656692,1656795-1656921,1657067-1657158,1657263-1657355,1657440-1657556,1657641-1657751,1657888-1657981,1658084-1658205,1658299-1658399,1658491-1658677	AT1G05570.1 CDS callose synthase 1 [TAIR10] CDS gene_syn ATGSL06, ATGSL6, CALS1, F3F20.1, F3F20_1, GLUCAN SYNTHASE-LIKE 6, GSL06, GSL6, callose synthase 1 gene CALS1 function Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48. go_component plasma membrane|GO:0005886|17317660|IDA go_component 1,3-beta-glucan synthase complex|GO:0000148|11283334|ISS go_component cell plate|GO:0009504|11283334|IDA go_process 1,3-beta-glucan biosynthetic process|GO:0006075|11283334|ISS go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product callose synthase 1 note callose synthase 1 (CALS1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane, cell plate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440), Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2); Has 1391 Blast hits to 1051 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 706; Plants - 540; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink). protein_id AT1G05570.1p transcript_id AT1G05570.1 protein_id AT1G05570.1p transcript_id AT1G05570.1
AT1G05570	chr1:001647880	0.0	C/1647880-1648128,1648227-1648412,1648499-1648549,1648626-1649426,1649531-1649760,1649850-1649962,1650044-1650127,1650216-1650334,1650457-1650576,1650728-1650887,1650982-1651171,1651256-1651324,1651437-1651562,1651648-1651757,1651833-1651984,1652114-1652243,1652327-1652424,1652514-1652637,1652719-1652879,1652967-1653051,1653823-1653917,1654019-1654156,1654282-1654368,1654451-1654500,1654588-1654669,1654832-1654892,1654976-1655028,1655120-1655457,1655631-1655748,1655830-1655949,1656201-1656294,1656391-1656467,1656555-1656692,1656795-1656921,1657067-1657158,1657263-1657355,1657440-1657556,1657641-1657751,1657888-1657981,1658084-1658205,1658299-1658399,1658491-1658677	AT1G05570.3 AT1G05570.3 CDS callose synthase 1
AT1G05570	chr1:001647880	0.0	C/1647880-1648128,1648227-1648412,1648499-1648549,1648626-1649426,1649531-1649760,1649850-1649962,1650044-1650127,1650216-1650334,1650457-1650576,1650728-1650887,1650982-1651171,1651256-1651324,1651437-1651562,1651648-1651757,1651833-1651984,1652114-1652243,1652327-1652424,1652514-1652637,1652719-1652879,1652967-1653051,1653823-1653917,1654019-1654156,1654282-1654368,1654451-1654500,1654588-1654669,1654832-1654892,1654976-1655028,1655120-1655457,1655631-1655748,1655830-1655949,1656201-1656294,1656391-1656467,1656555-1656692,1656795-1656921,1657067-1657158,1657263-1657355,1657440-1657556,1657641-1657751,1657888-1657981,1658084-1658205,1658299-1658399,1658491-1658677	AT1G05570.4 AT1G05570.4 CDS callose synthase 1
At1g05575	chr1:001661829	0.0	C/1661829-1662098	AT1G05575.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process anaerobic respiration|GO:0009061|20097791|IEP go_process anaerobic respiration|GO:0009061|20097791|IMP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05575.1p transcript_id AT1G05575.1 protein_id AT1G05575.1p transcript_id AT1G05575.1
At1g05577	chr1:001662643	0.0	C/1662643-1662838,1662914-1663018,1663236-1663734,1663807-1663922,1664000-1664069,1664156-1664288	AT1G05577.1 CDS UPSTREAM OF FLC protein (DUF966) [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF966) note CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 167 Blast hits to 166 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G05577.1p transcript_id AT1G05577.1 protein_id AT1G05577.1p transcript_id AT1G05577.1
At1g05580	chr1:001665594	0.0	C/1665594-1666943,1667237-1667778,1667999-1668377	AT1G05580.2 CDS cation/H+ exchanger 23 [TAIR10] CDS gene_syn ATCHX23, CHX23, F3F20.2, F3F20_2, cation/H+ exchanger 23 gene CHX23 function member of Putative Na+/H+ antiporter family go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process cation transport|GO:0006812|11500563|IC go_function monovalent cation:hydrogen antiporter activity|GO:0005451|11500563|NAS go_function sodium:hydrogen antiporter activity|GO:0015385||ISS product cation/H+ exchanger 23 note cation/H+ exchanger 23 (CHX23); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 21 (TAIR:AT2G31910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05580.2p transcript_id AT1G05580.2 protein_id AT1G05580.2p transcript_id AT1G05580.2
At1g05580	chr1:001665594	0.0	C/1665594-1666943,1667237-1667778,1667999-1668455,1668540-1668794	AT1G05580.1 CDS cation/H+ exchanger 23 [TAIR10] CDS gene_syn ATCHX23, CHX23, F3F20.2, F3F20_2, cation/H+ exchanger 23 gene CHX23 function member of Putative Na+/H+ antiporter family go_component integral to membrane|GO:0016021||IEA go_process cation transport|GO:0006812|11500563|IC go_function monovalent cation:hydrogen antiporter activity|GO:0005451|11500563|NAS go_function sodium:hydrogen antiporter activity|GO:0015385||ISS product cation/H+ exchanger 23 note cation/H+ exchanger 23 (CHX23); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 21 (TAIR:AT2G31910.1); Has 6204 Blast hits to 6178 proteins in 1654 species: Archae - 257; Bacteria - 4841; Metazoa - 0; Fungi - 132; Plants - 575; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink). protein_id AT1G05580.1p transcript_id AT1G05580.1 protein_id AT1G05580.1p transcript_id AT1G05580.1
At1g05590	chr1:001669871	0.0	W/1669871-1670660,1670734-1671686	AT1G05590.1 CDS beta-hexosaminidase 2 [TAIR10] CDS gene_syn ATHEX3, BETA-HEXOSAMINIDASE 3, F3F20.4, F3F20_4, HEXO2, beta-hexosaminidase 2 gene HEXO2 function Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3. go_process carbohydrate metabolic process|GO:0005975||IEA go_component plasma membrane|GO:0005886|17644627|IDA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS go_function beta-N-acetylhexosaminidase activity|GO:0004563|17644627|IDA go_function hexosaminidase activity|GO:0015929|17636254|IDA go_function UDP-glucosyltransferase activity|GO:0035251|11641410|IDA product beta-hexosaminidase 2 note beta-hexosaminidase 2 (HEXO2); FUNCTIONS IN: UDP-glucosyltransferase activity, hexosaminidase activity, beta-N-acetylhexosaminidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase, subunit a/b (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 1 (TAIR:AT3G55260.1); Has 3806 Blast hits to 3725 proteins in 709 species: Archae - 2; Bacteria - 2403; Metazoa - 477; Fungi - 234; Plants - 128; Viruses - 0; Other Eukaryotes - 562 (source: NCBI BLink). protein_id AT1G05590.1p transcript_id AT1G05590.1 protein_id AT1G05590.1p transcript_id AT1G05590.1
AT1G05590	chr1:001669871	0.0	W/1669871-1670660,1670734-1671686	AT1G05590.2 AT1G05590.2 CDS beta-hexosaminidase 2
AT1G05590	chr1:001669871	0.0	W/1669871-1670660,1670734-1671686	AT1G05590.3 AT1G05590.3 CDS beta-hexosaminidase 2
At1g05600	chr1:001672161	0.0	W/1672161-1673675	AT1G05600.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F3F20.5, F3F20_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 22742 Blast hits to 7544 proteins in 214 species: Archae - 0; Bacteria - 12; Metazoa - 114; Fungi - 111; Plants - 22140; Viruses - 0; Other Eukaryotes - 365 (source: NCBI BLink). protein_id AT1G05600.1p transcript_id AT1G05600.1 protein_id AT1G05600.1p transcript_id AT1G05600.1
At1g05600	chr1:001672161	0.0	W/1672161-1673675	AT1G05600.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F3F20.5, F3F20_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1). protein_id AT1G05600.2p transcript_id AT1G05600.2 protein_id AT1G05600.2p transcript_id AT1G05600.2
AT1G05600	chr1:001672161	0.0	W/1672161-1673675	AT1G05600.3 AT1G05600.3 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G05600	chr1:001672161	0.0	W/1672161-1673675	AT1G05600.4 AT1G05600.4 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G05610	chr1:001673895	0.0	C/1673895-1674011,1674104-1674229,1674324-1674422,1674517-1674634,1674714-1674817,1674890-1675063,1675132-1675392,1675485-1675934	AT1G05610.2 AT1G05610.2 CDS ADP-glucose pyrophosphorylase small subunit 2
At1g05610	chr1:001673895	0.0	C/1673895-1674011,1674104-1674229,1674324-1674422,1674517-1674634,1674732-1674817,1674890-1675063,1675132-1675392,1675485-1675934	AT1G05610.1 CDS ADP-glucose pyrophosphorylase small subunit 2 [TAIR10] CDS gene_syn ADP-GLUCOSE PYROPHOSPHORYLASE, ADP-glucose pyrophosphorylase small subunit 2, APS2, F3F20.6, F3F20_6 gene APS2 function Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested. go_process biosynthetic process|GO:0009058||IEA go_function transferase activity|GO:0016740||IEA go_function nucleotidyltransferase activity|GO:0016779||IEA go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878||ISS product ADP-glucose pyrophosphorylase small subunit 2 note ADP-glucose pyrophosphorylase small subunit 2 (APS2); FUNCTIONS IN: transferase activity, glucose-1-phosphate adenylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Trimeric LpxA-like (InterPro:IPR011004), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase 1 (TAIR:AT5G48300.1); Has 7131 Blast hits to 7129 proteins in 1626 species: Archae - 269; Bacteria - 4720; Metazoa - 15; Fungi - 23; Plants - 1553; Viruses - 0; Other Eukaryotes - 551 (source: NCBI BLink). protein_id AT1G05610.1p transcript_id AT1G05610.1 protein_id AT1G05610.1p transcript_id AT1G05610.1
At1g05615	chr1:001677507	0.0	C/1677507-1677806,1677901-1677964,1678116-1678270	AT1G05615.1 CDS B3 domain protein (DUF313) [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF313) note Domain of unknown function (DUF313) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT2G24670.1); Has 82 Blast hits to 82 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05615.1p transcript_id AT1G05615.1 protein_id AT1G05615.1p transcript_id AT1G05615.1
At1g05620	chr1:001679286	0.0	W/1679286-1679337,1679601-1679716,1679824-1679883,1680121-1680306,1680401-1680505,1680623-1680719,1680914-1681021,1681162-1681297,1681419-1681527	AT1G05620.1 CDS uridine-ribohydrolase 2 [TAIR10] CDS gene_syn F3F20.7, F3F20_7, URH2, uridine-ribohydrolase 2 gene URH2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS go_function UDP-glucosyltransferase activity|GO:0035251|11641410|IDA product uridine-ribohydrolase 2 note uridine-ribohydrolase 2 (URH2); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 6369 Blast hits to 6297 proteins in 1349 species: Archae - 75; Bacteria - 4652; Metazoa - 179; Fungi - 246; Plants - 186; Viruses - 0; Other Eukaryotes - 1031 (source: NCBI BLink). protein_id AT1G05620.1p transcript_id AT1G05620.1 protein_id AT1G05620.1p transcript_id AT1G05620.1
At1g05620	chr1:001679609	0.0	W/1679609-1679716,1679824-1679883,1680121-1680306,1680401-1680505,1680623-1680719,1680914-1681021,1681162-1681297,1681419-1681527	AT1G05620.2 CDS uridine-ribohydrolase 2 [TAIR10] CDS gene_syn F3F20.7, F3F20_7, URH2, uridine-ribohydrolase 2 gene URH2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS go_function UDP-glucosyltransferase activity|GO:0035251|11641410|IDA product uridine-ribohydrolase 2 note uridine-ribohydrolase 2 (URH2); FUNCTIONS IN: hydrolase activity, UDP-glucosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05620.2p transcript_id AT1G05620.2 protein_id AT1G05620.2p transcript_id AT1G05620.2
At1g05630	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685484,1685587-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.2 CDS Endonuclease/exonuclease/phosphatase family protein [TAIR10] CDS gene_syn 5PTASE13, AT5PTASE13, F3F20.8, F3F20_8 gene 5PTASE13 function Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light stimulated increase in cytosolic calcium ion. go_component nucleus|GO:0005634|18931139|IDA go_process response to nutrient|GO:0007584|18931139|IMP go_process response to wounding|GO:0009611|15574849|IEP go_process response to blue light|GO:0009637|18252844|IEP go_process response to blue light|GO:0009637|18252844|IMP go_process response to abscisic acid stimulus|GO:0009737|15574849|IEP go_process response to abscisic acid stimulus|GO:0009737|18931139|IMP go_process response to carbohydrate stimulus|GO:0009743|18931139|IMP go_process phloem or xylem histogenesis|GO:0010087|16299182|IMP go_process sugar mediated signaling pathway|GO:0010182|18931139|IMP go_process auxin homeostasis|GO:0010252|16299182|IMP go_process root development|GO:0048364|18931139|IMP go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|15574849|IDA go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|18931139|IMP go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS product Endonuclease/exonuclease/phosphatase family protein note 5PTASE13; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05630.2p transcript_id AT1G05630.2 protein_id AT1G05630.2p transcript_id AT1G05630.2
AT1G05630	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685484,1685587-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.3 AT1G05630.3 CDS Endonuclease/exonuclease/phosphatase family protein
AT1G05630	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685484,1685587-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.5 AT1G05630.5 CDS Endonuclease/exonuclease/phosphatase family protein
AT1G05630	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685484,1685587-1685627,1685714-1685981,1686127-1686323	AT1G05630.4 AT1G05630.4 CDS Endonuclease/exonuclease/phosphatase family protein
At1g05630	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.1 CDS Endonuclease/exonuclease/phosphatase family protein [TAIR10] CDS gene_syn 5PTASE13, AT5PTASE13, F3F20.8, F3F20_8 gene 5PTASE13 function Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light stimulated increase in cytosolic calcium ion. go_component nucleus|GO:0005634|18931139|IDA go_process response to nutrient|GO:0007584|18931139|IMP go_process response to wounding|GO:0009611|15574849|IEP go_process response to blue light|GO:0009637|18252844|IEP go_process response to blue light|GO:0009637|18252844|IMP go_process response to abscisic acid stimulus|GO:0009737|15574849|IEP go_process response to abscisic acid stimulus|GO:0009737|18931139|IMP go_process response to carbohydrate stimulus|GO:0009743|18931139|IMP go_process phloem or xylem histogenesis|GO:0010087|16299182|IMP go_process sugar mediated signaling pathway|GO:0010182|18931139|IMP go_process auxin homeostasis|GO:0010252|16299182|IMP go_process root development|GO:0048364|18931139|IMP go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|15574849|IDA go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|18931139|IMP go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS product Endonuclease/exonuclease/phosphatase family protein note 5PTASE13; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 2865 Blast hits to 2115 proteins in 235 species: Archae - 0; Bacteria - 18; Metazoa - 1064; Fungi - 695; Plants - 755; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink). protein_id AT1G05630.1p transcript_id AT1G05630.1 protein_id AT1G05630.1p transcript_id AT1G05630.1
At1g05640	chr1:001687436	0.0	C/1687436-1688305,1688389-1688798,1688898-1689501	AT1G05640.1 CDS Ankyrin repeat family protein [TAIR10] CDS gene_syn F3F20.9, F3F20_9 product Ankyrin repeat family protein note Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G31820.1); Has 67578 Blast hits to 27690 proteins in 1106 species: Archae - 88; Bacteria - 6425; Metazoa - 32117; Fungi - 6903; Plants - 5434; Viruses - 485; Other Eukaryotes - 16126 (source: NCBI BLink). protein_id AT1G05640.1p transcript_id AT1G05640.1 protein_id AT1G05640.1p transcript_id AT1G05640.1
At1g05650	chr1:001690264	0.0	C/1690264-1690491,1690602-1690830,1690979-1691268,1691689-1692126	AT1G05650.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn F3F20.10, F3F20_10 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function polygalacturonase activity|GO:0004650||IEA go_process carbohydrate metabolic process|GO:0005975||ISS go_function polygalacturonase activity|GO:0004650||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05660.1); Has 4025 Blast hits to 4009 proteins in 482 species: Archae - 4; Bacteria - 1133; Metazoa - 14; Fungi - 1282; Plants - 1474; Viruses - 2; Other Eukaryotes - 116 (source: NCBI BLink). protein_id AT1G05650.1p transcript_id AT1G05650.1 protein_id AT1G05650.1p transcript_id AT1G05650.1
At1g05660	chr1:001694286	0.0	C/1694286-1694513,1694620-1694848,1694996-1695285,1695621-1696058	AT1G05660.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn F3F20.11, F3F20_11 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function polygalacturonase activity|GO:0004650||IEA go_process carbohydrate metabolic process|GO:0005975||ISS go_function polygalacturonase activity|GO:0004650||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05650.1); Has 4025 Blast hits to 4004 proteins in 488 species: Archae - 4; Bacteria - 1122; Metazoa - 14; Fungi - 1275; Plants - 1489; Viruses - 2; Other Eukaryotes - 119 (source: NCBI BLink). protein_id AT1G05660.1p transcript_id AT1G05660.1 protein_id AT1G05660.1p transcript_id AT1G05660.1
At1g05670	chr1:001698574	0.0	C/1698574-1700799	AT1G05670.1 CDS Pentatricopeptide repeat (PPR-like) superfamily protein [TAIR10] CDS gene_syn F3F20.12, F3F20_12 go_component cellular_component|GO:0005575||ND go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Pentatricopeptide repeat (PPR-like) superfamily protein note Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3; Bacteria - 657; Metazoa - 3612; Fungi - 1352; Plants - 68766; Viruses - 129; Other Eukaryotes - 2400 (source: NCBI BLink). protein_id AT1G05670.1p transcript_id AT1G05670.1 protein_id AT1G05670.1p transcript_id AT1G05670.1
At1g05670	chr1:001698574	0.0	C/1698574-1700799	AT1G05670.2 CDS Pentatricopeptide repeat (PPR-like) superfamily protein [TAIR10] CDS gene_syn F3F20.12, F3F20_12 go_component cellular_component|GO:0005575||ND go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Pentatricopeptide repeat (PPR-like) superfamily protein note Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3; Bacteria - 657; Metazoa - 3612; Fungi - 1352; Plants - 68766; Viruses - 129; Other Eukaryotes - 2400 (source: NCBI BLink). protein_id AT1G05670.2p transcript_id AT1G05670.2 protein_id AT1G05670.2p transcript_id AT1G05670.2
AT1G05670	chr1:001698574	0.0	C/1698574-1700799	AT1G05670.3 AT1G05670.3 CDS Pentatricopeptide repeat (PPR-like) superfamily protein
At1g05675	chr1:001701213	0.0	C/1701213-1701929,1702071-1702715	AT1G05675.1 CDS UDP-Glycosyltransferase superfamily protein [TAIR10] CDS go_process metabolic process|GO:0008152||IEA go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA product UDP-Glycosyltransferase superfamily protein note UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: Uridine diphosphate glycosyltransferase 74E2 (TAIR:AT1G05680.1). protein_id AT1G05675.1p transcript_id AT1G05675.1 protein_id AT1G05675.1p transcript_id AT1G05675.1
At1g05680	chr1:001703196	0.0	C/1703196-1703912,1703995-1704639	AT1G05680.1 CDS Uridine diphosphate glycosyltransferase 74E2 [TAIR10] CDS gene_syn F3F20.13, F3F20_13, UGT74E2, Uridine diphosphate glycosyltransferase 74E2 gene UGT74E2 function Encodes a UDP-glucosyltransferase, UGT74E2, that acts on IBA (indole-3-butyric acid) and affects auxin homeostasis. The transcript and protein levels of this enzyme are strongly induced by H2O2 and may allow integration of ROS (reactive oxygen species) and auxin signaling. This enzyme can also transfer glycosyl groups to several compounds related to the explosive TNT when this synthetic compound is taken up from the environment. go_component cellular_component|GO:0005575||ND go_process shoot morphogenesis|GO:0010016|20798329|IMP go_process cellular response to water deprivation|GO:0042631|20798329|IEP go_process cellular response to hydrogen peroxide|GO:0070301|20798329|IEP go_process cellular response to abscisic acid stimulus|GO:0071215|20798329|IMP go_process cellular hyperosmotic salinity response|GO:0071475|20798329|IEP go_process indolebutyric acid metabolic process|GO:0080024|20798329|IMP go_process response to karrikin|GO:0080167|20351290|IEP go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA product Uridine diphosphate glycosyltransferase 74E2 note Uridine diphosphate glycosyltransferase 74E2 (UGT74E2); CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G05675.1); Has 8397 Blast hits to 8309 proteins in 513 species: Archae - 0; Bacteria - 605; Metazoa - 2499; Fungi - 31; Plants - 5061; Viruses - 123; Other Eukaryotes - 78 (source: NCBI BLink). protein_id AT1G05680.1p transcript_id AT1G05680.1 protein_id AT1G05680.1p transcript_id AT1G05680.1
At1g05690	chr1:001707809	0.0	W/1707809-1708027,1708105-1708235,1708312-1708926,1709003-1709132	AT1G05690.1 CDS BTB and TAZ domain protein 3 [TAIR10] CDS gene_syn BT3, BTB and TAZ domain protein 3, F3F20.14, F3F20_14 gene BT3 function BTB and TAZ domain protein. Acts redunantly with BT1 and BT2 during female gametophyte development. Acts with BT2 during male gametophyte development. go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_process embryo sac development|GO:0009553|19054356|IGI go_process pollen development|GO:0009555|19054356|IGI go_function transcription regulator activity|GO:0030528|10748221|TAS product BTB and TAZ domain protein 3 note BTB and TAZ domain protein 3 (BT3); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: embryo sac development, pollen development; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB and TAZ domain protein 4 (TAIR:AT5G67480.2); Has 1903 Blast hits to 1903 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 1048; Fungi - 0; Plants - 775; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). protein_id AT1G05690.1p transcript_id AT1G05690.1 protein_id AT1G05690.1p transcript_id AT1G05690.1
At1g05700	chr1:001709796	0.0	W/1709796-1709883,1709983-1710520,1710647-1711122,1711202-1711340,1711429-1711500,1711596-1711667,1711739-1711977,1712071-1712285,1712362-1712551,1712638-1712827,1712906-1713245	AT1G05700.1 CDS Leucine-rich repeat transmembrane protein kinase protein [TAIR10] CDS gene_syn F3F20.15, F3F20_15 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301||ISS product Leucine-rich repeat transmembrane protein kinase protein note Leucine-rich repeat transmembrane protein kinase protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase protein (TAIR:AT4G29990.1); Has 163331 Blast hits to 124125 proteins in 4749 species: Archae - 121; Bacteria - 14440; Metazoa - 44652; Fungi - 9862; Plants - 74464; Viruses - 498; Other Eukaryotes - 19294 (source: NCBI BLink). protein_id AT1G05700.1p transcript_id AT1G05700.1 protein_id AT1G05700.1p transcript_id AT1G05700.1
AT1G05700	chr1:001709796	0.0	W/1709796-1709883,1709983-1710520,1710647-1711122,1711202-1711340,1711429-1711500,1711596-1711667,1711739-1712285,1712362-1712551,1712638-1712827,1712906-1713245	AT1G05700.2 AT1G05700.2 CDS Leucine-rich repeat transmembrane protein kinase protein
AT1G05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.11 AT1G05710.11 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
AT1G05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.12 AT1G05710.12 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
AT1G05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.14 AT1G05710.14 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F3F20.16, F3F20_16 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_process response to ethylene stimulus|GO:0009723||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1); Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1005; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05710.1p transcript_id AT1G05710.1 protein_id AT1G05710.1p transcript_id AT1G05710.1
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.3 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F3F20.16, F3F20_16 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_process response to ethylene stimulus|GO:0009723||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05710.3p transcript_id AT1G05710.3 protein_id AT1G05710.3p transcript_id AT1G05710.3
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.4 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F3F20.16, F3F20_16 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_process response to ethylene stimulus|GO:0009723||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05710.4p transcript_id AT1G05710.4 protein_id AT1G05710.4p transcript_id AT1G05710.4
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.5 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F3F20.16, F3F20_16 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_process response to ethylene stimulus|GO:0009723||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1). protein_id AT1G05710.5p transcript_id AT1G05710.5 protein_id AT1G05710.5p transcript_id AT1G05710.5
AT1G05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.10 AT1G05710.10 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
AT1G05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.13 AT1G05710.13 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F3F20.16, F3F20_16 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_process response to ethylene stimulus|GO:0009723||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1); Has 853 Blast hits to 853 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05710.2p transcript_id AT1G05710.2 protein_id AT1G05710.2p transcript_id AT1G05710.2
AT1G05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.7 AT1G05710.7 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
AT1G05710	chr1:001716222	0.0	W/1716222-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.6 AT1G05710.6 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
AT1G05710	chr1:001716222	0.0	W/1716222-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.8 AT1G05710.8 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
AT1G05710	chr1:001716222	0.0	W/1716222-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.9 AT1G05710.9 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g05720	chr1:001717677	0.0	C/1717677-1717749,1718120-1718301,1718430-1718488,1718672-1718849	AT1G05720.1 CDS selenoprotein family protein [TAIR10] CDS gene_syn F3F20.17, F3F20_17 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function selenium binding|GO:0008430||ISS product selenoprotein family protein note selenoprotein family protein; FUNCTIONS IN: selenium binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sep15/SelM redox (InterPro:IPR014912); Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G05720.1p transcript_id AT1G05720.1 protein_id AT1G05720.1p transcript_id AT1G05720.1
At1g05730	chr1:001719107	0.0	W/1719107-1719235,1719760-1719897,1719977-1720159	AT1G05730.1 CDS FAM136A-like protein (DUF842) [TAIR10] CDS gene_syn F3F20.18, F3F20_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Eukaryotic protein of unknown function (DUF842) note Eukaryotic protein of unknown function (DUF842); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT2G31725.1); Has 245 Blast hits to 245 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G05730.1p transcript_id AT1G05730.1 protein_id AT1G05730.1p transcript_id AT1G05730.1
AT1G05730	chr1:001719727	0.0	W/1719727-1719897,1719977-1720159	AT1G05730.2 AT1G05730.2 CDS FAM136A-like protein (DUF842)
At1g05740	chr1:001720674	0.0	W/1720674-1720802,1720923-1721093,1721172-1721309	AT1G05740.1 CDS FAM136A-like protein (DUF842) [TAIR10] CDS gene_syn F3F20.19, F3F20_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Eukaryotic protein of unknown function (DUF842) note Eukaryotic protein of unknown function (DUF842); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT1G05730.1); Has 144 Blast hits to 144 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G05740.1p transcript_id AT1G05740.1 protein_id AT1G05740.1p transcript_id AT1G05740.1
At1g05750	chr1:001721523	0.0	W/1721523-1723025	AT1G05750.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn CLB19, PDE247, T20M3.1, T20M3_1, pigment defective 247 gene PDE247 function Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. go_component chloroplast|GO:0009507|18657233|IDA go_process RNA modification|GO:0009451|18657233|IMP product Tetratricopeptide repeat (TPR)-like superfamily protein note pigment defective 247 (PDE247); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 41993 Blast hits to 13871 proteins in 254 species: Archae - 1; Bacteria - 18; Metazoa - 75; Fungi - 77; Plants - 41230; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink). protein_id AT1G05750.1p transcript_id AT1G05750.1 protein_id AT1G05750.1p transcript_id AT1G05750.1
AT1G05750	chr1:001721523	0.0	W/1721523-1723025	AT1G05750.2 AT1G05750.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g05760	chr1:001723797	0.0	C/1723797-1724114,1724234-1724440	AT1G05760.1 CDS Mannose-binding lectin superfamily protein [TAIR10] CDS gene_syn RTM1, T20M3.2, T20M3_2, restricted tev movement 1 gene RTM1 function Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance go_component cellular_component|GO:0005575||ND go_process response to virus|GO:0009615|9628015|IMP go_function sugar binding|GO:0005529|10618445|ISS product Mannose-binding lectin superfamily protein note restricted tev movement 1 (RTM1); FUNCTIONS IN: sugar binding; INVOLVED IN: response to virus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G05770.1); Has 829 Blast hits to 525 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 828; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G05760.1p transcript_id AT1G05760.1 protein_id AT1G05760.1p transcript_id AT1G05760.1
AT1G05760	chr1:001723797	0.0	C/1723797-1724114,1724234-1724512	AT1G05760.2 AT1G05760.2 CDS Mannose-binding lectin superfamily protein
At1g05770	chr1:001725547	0.0	C/1725547-1725882,1726032-1726250	AT1G05770.1 CDS Mannose-binding lectin superfamily protein [TAIR10] CDS gene_syn T20M3.3, T20M3_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Mannose-binding lectin superfamily protein note Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G05760.1); Has 502 Blast hits to 381 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 502; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05770.1p transcript_id AT1G05770.1 protein_id AT1G05770.1p transcript_id AT1G05770.1
At1g05780	chr1:001726761	0.0	W/1726761-1726857,1727957-1728180	AT1G05780.1 CDS Vacuolar ATPase assembly integral membrane protein VMA21-like domain [TAIR10] CDS gene_syn T20M3.4, T20M3_4 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Vacuolar ATPase assembly integral membrane protein VMA21-like domain note Vacuolar ATPase assembly integral membrane protein VMA21-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013); BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT2G31710.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05780.1p transcript_id AT1G05780.1 protein_id AT1G05780.1p transcript_id AT1G05780.1
AT1G05780	chr1:001726761	0.0	W/1726761-1726857,1727957-1728180	AT1G05780.2 AT1G05780.2 CDS Vacuolar ATPase assembly integral membrane protein VMA21-like domain
AT1G05783	chr1:001728658	0.0	C/1728658-1728663,1728758-1728803,1728864-1728883,1729104-1729149,1729358-1729575	AT1G05783.1 AT1G05783.1 CDS hypothetical protein
AT1G05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732158-1732184	AT1G05785.4 AT1G05785.4 CDS Got1/Sft2-like vescicle transport protein family
At1g05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.1 CDS Got1/Sft2-like vescicle transport protein family [TAIR10] CDS go_process vesicle-mediated transport|GO:0016192||IEA go_component cellular_component|GO:0005575||ND go_process vesicle-mediated transport|GO:0016192||ISS go_function molecular_function|GO:0003674||ND product Got1/Sft2-like vescicle transport protein family note Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2); Has 450 Blast hits to 450 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 111; Plants - 97; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). protein_id AT1G05785.1p transcript_id AT1G05785.1 protein_id AT1G05785.1p transcript_id AT1G05785.1
At1g05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.2 CDS Got1/Sft2-like vescicle transport protein family [TAIR10] CDS go_process vesicle-mediated transport|GO:0016192||IEA go_component cellular_component|GO:0005575||ND go_process vesicle-mediated transport|GO:0016192||ISS go_function molecular_function|GO:0003674||ND product Got1/Sft2-like vescicle transport protein family note Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2); Has 450 Blast hits to 450 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 111; Plants - 97; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). protein_id AT1G05785.2p transcript_id AT1G05785.2 protein_id AT1G05785.2p transcript_id AT1G05785.2
AT1G05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.5 AT1G05785.5 CDS Got1/Sft2-like vescicle transport protein family
AT1G05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732236	AT1G05785.6 AT1G05785.6 CDS Got1/Sft2-like vescicle transport protein family
AT1G05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732236	AT1G05785.7 AT1G05785.7 CDS Got1/Sft2-like vescicle transport protein family
AT1G05785	chr1:001731284	0.0	W/1731284-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.3 AT1G05785.3 CDS Got1/Sft2-like vescicle transport protein family
At1g05790	chr1:001733039	0.0	W/1733039-1733299,1733478-1733616,1733778-1733892,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.1 CDS lipase class 3 family protein [TAIR10] CDS gene_syn T20M3.5, T20M3_5 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function triglyceride lipase activity|GO:0004806||IEA go_process lipid metabolic process|GO:0006629||ISS go_function triglyceride lipase activity|GO:0004806||ISS product lipase class 3 family protein note lipase class 3 family protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1); Has 496 Blast hits to 490 proteins in 107 species: Archae - 0; Bacteria - 1; Metazoa - 175; Fungi - 34; Plants - 194; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). protein_id AT1G05790.1p transcript_id AT1G05790.1 protein_id AT1G05790.1p transcript_id AT1G05790.1
AT1G05790	chr1:001733039	0.0	W/1733039-1733299,1733478-1733616,1733778-1733997,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.3 AT1G05790.3 CDS lipase class 3 family protein
AT1G05790	chr1:001733039	0.0	W/1733039-1733299,1733478-1733616,1733778-1733997,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736413-1736452,1736532-1736596	AT1G05790.4 AT1G05790.4 CDS lipase class 3 family protein
At1g05790	chr1:001733996	0.0	W/1733996-1733997,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.2 CDS lipase class 3 family protein [TAIR10] CDS gene_syn T20M3.5, T20M3_5 go_process lipid metabolic process|GO:0006629||IEA go_function triglyceride lipase activity|GO:0004806||IEA go_process lipid metabolic process|GO:0006629||ISS go_function triglyceride lipase activity|GO:0004806||ISS product lipase class 3 family protein note lipase class 3 family protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1); Has 496 Blast hits to 490 proteins in 108 species: Archae - 0; Bacteria - 1; Metazoa - 175; Fungi - 34; Plants - 192; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G05790.2p transcript_id AT1G05790.2 protein_id AT1G05790.2p transcript_id AT1G05790.2
At1g05800	chr1:001741204	0.0	W/1741204-1742619	AT1G05800.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn DGL, DONGLE, T20M3.6 gene DGL function Encodes a galactolipase. Located in the chloroplast. Involved in the initial step of jasmonic acid biosynthesis. Expressed in vegetative tissues and is necessary for the biosynthesis of basal-level JAs in vegetative tissues. go_component lipid particle|GO:0005811|20348210|IDA go_component chloroplast|GO:0009507|18267087|IDA go_process lipid metabolic process|GO:0006629||ISS go_process response to wounding|GO:0009611|18267087|IEP go_process jasmonic acid biosynthetic process|GO:0009695|18267087|IMP go_process negative regulation of cell growth|GO:0030308|18267087|IMP go_process defense response to fungus|GO:0050832|18267087|IMP go_function triglyceride lipase activity|GO:0004806||ISS go_function phospholipase A1 activity|GO:0008970|18267087|IDA go_function galactolipase activity|GO:0047714|18267087|IDA product alpha/beta-Hydrolases superfamily protein note DONGLE (DGL); CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G31690.1); Has 1183 Blast hits to 1177 proteins in 252 species: Archae - 0; Bacteria - 234; Metazoa - 21; Fungi - 238; Plants - 544; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink). protein_id AT1G05800.1p transcript_id AT1G05800.1 protein_id AT1G05800.1p transcript_id AT1G05800.1
At1g05805	chr1:001744843	0.0	W/1744843-1745317,1746210-1746502,1746761-1746889,1747036-1747101,1747193-1747261,1747371-1747427	AT1G05805.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS go_component cytosol|GO:0005829|18433157|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G43140.2); Has 2662 Blast hits to 2007 proteins in 137 species: Archae - 2; Bacteria - 54; Metazoa - 424; Fungi - 144; Plants - 1472; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). protein_id AT1G05805.1p transcript_id AT1G05805.1 protein_id AT1G05805.1p transcript_id AT1G05805.1
AT1G05810	chr1:001748305	0.0	W/1748305-1748776,1749028-1749350	AT1G05810.2 AT1G05810.2 CDS Rab GTPase-like A5A protein
At1g05810	chr1:001748443	0.0	W/1748443-1748776,1749028-1749347	AT1G05810.1 CDS Rab GTPase-like A5A protein [TAIR10] CDS gene_syn ARA, ARA-1, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, ATRAB11D, ATRABA5E, RAB GTPase homolog A5E, RABA5E, T20M3.8, T20M3_8 gene RABA5E go_component chloroplast|GO:0009507||IEA go_process small GTPase mediated signal transduction|GO:0007264||IEA go_process protein transport|GO:0015031||IEA go_function GTP binding|GO:0005525||IEA go_function GTP binding|GO:0005525||ISS product RAB GTPase homolog A5E note RAB GTPase homolog A5E (RABA5E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23; Bacteria - 136; Metazoa - 14522; Fungi - 3761; Plants - 3260; Viruses - 20; Other Eukaryotes - 5865 (source: NCBI BLink). protein_id AT1G05810.1p transcript_id AT1G05810.1 protein_id AT1G05810.1p transcript_id AT1G05810.1
At1g05820	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753547,1753661-1753767	AT1G05820.1 CDS SIGNAL PEPTIDE PEPTIDASE-LIKE 5 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, ATSPPL5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SPPL5, T20M3.9, T20M3_9 gene SPPL5 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_function aspartic-type endopeptidase activity|GO:0004190||IEA go_process proteolysis|GO:0006508||ISS go_function peptidase activity|GO:0008233||ISS product SIGNAL PEPTIDE PEPTIDASE-LIKE 5 note SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05820.1p transcript_id AT1G05820.1 protein_id AT1G05820.1p transcript_id AT1G05820.1
At1g05820	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753567	AT1G05820.2 CDS SIGNAL PEPTIDE PEPTIDASE-LIKE 5 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, ATSPPL5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SPPL5, T20M3.9, T20M3_9 gene SPPL5 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_function aspartic-type endopeptidase activity|GO:0004190||IEA go_process proteolysis|GO:0006508||ISS go_function peptidase activity|GO:0008233||ISS product SIGNAL PEPTIDE PEPTIDASE-LIKE 5 note SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05820.2p transcript_id AT1G05820.2 protein_id AT1G05820.2p transcript_id AT1G05820.2
AT1G05820	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752790	AT1G05820.3 AT1G05820.3 CDS SIGNAL PEPTIDE PEPTIDASE-LIKE 5
AT1G05820	chr1:001750867	0.0	W/1750867-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753547,1753661-1753767	AT1G05820.4 AT1G05820.4 CDS SIGNAL PEPTIDE PEPTIDASE-LIKE 5
At1g05830	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.1 CDS trithorax-like protein 2 [TAIR10] CDS gene_syn ATX2, SDG30, SET DOMAIN PROTEIN 30, T20M3.10, T20M3_10, trithorax-like protein 2 gene ATX2 function Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1. go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process regulation of transcription|GO:0045449|18375658|IMP go_process histone H3-K4 methylation|GO:0051568|18375658|IMP go_function DNA binding|GO:0003677||ISS go_function histone methyltransferase activity (H3-K4 specific)|GO:0042800|18375658|IMP product trithorax-like protein 2 note trithorax-like protein 2 (ATX2); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific), DNA binding; INVOLVED IN: histone H3-K4 methylation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stigma, rosette leaf, male gametophyte, root; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), FY-rich, C-terminal (InterPro:IPR003889), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, N-terminal (InterPro:IPR003888), Post-SET domain (InterPro:IPR003616), FY-rich, C-terminal subgroup (InterPro:IPR018516), PWWP (InterPro:IPR000313), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), FY-rich, N-terminal subgroup (InterPro:IPR018518), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 7263 Blast hits to 7069 proteins in 482 species: Archae - 2; Bacteria - 419; Metazoa - 3302; Fungi - 848; Plants - 1335; Viruses - 0; Other Eukaryotes - 1357 (source: NCBI BLink). protein_id AT1G05830.1p transcript_id AT1G05830.1 protein_id AT1G05830.1p transcript_id AT1G05830.1
At1g05830	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.2 CDS trithorax-like protein 2 [TAIR10] CDS gene_syn ATX2, SDG30, SET DOMAIN PROTEIN 30, T20M3.10, T20M3_10, trithorax-like protein 2 gene ATX2 function Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1. go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process regulation of transcription|GO:0045449|18375658|IMP go_process histone H3-K4 methylation|GO:0051568|18375658|IMP go_function DNA binding|GO:0003677||ISS go_function histone methyltransferase activity (H3-K4 specific)|GO:0042800|18375658|IMP product trithorax-like protein 2 note trithorax-like protein 2 (ATX2); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific), DNA binding; INVOLVED IN: histone H3-K4 methylation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stigma, rosette leaf, male gametophyte, root; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), FY-rich, C-terminal (InterPro:IPR003889), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, N-terminal (InterPro:IPR003888), Post-SET domain (InterPro:IPR003616), FY-rich, C-terminal subgroup (InterPro:IPR018516), PWWP (InterPro:IPR000313), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), FY-rich, N-terminal subgroup (InterPro:IPR018518), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 7263 Blast hits to 7069 proteins in 482 species: Archae - 2; Bacteria - 419; Metazoa - 3302; Fungi - 848; Plants - 1335; Viruses - 0; Other Eukaryotes - 1357 (source: NCBI BLink). protein_id AT1G05830.2p transcript_id AT1G05830.2 protein_id AT1G05830.2p transcript_id AT1G05830.2
AT1G05830	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.3 AT1G05830.3 CDS trithorax-like protein 2
AT1G05830	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.4 AT1G05830.4 CDS trithorax-like protein 2
At1g05835	chr1:001762248	0.0	W/1762248-1762308,1762380-1762702	AT1G05835.1 CDS PHD finger protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product PHD finger protein note PHD finger protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32583.1); Has 93 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05835.1p transcript_id AT1G05835.1 protein_id AT1G05835.1p transcript_id AT1G05835.1
At1g05840	chr1:001762843	0.0	C/1762843-1762988,1763091-1763162,1763344-1763419,1763541-1763628,1763804-1763877,1763953-1764115,1764367-1764594,1765301-1765548,1765631-1765760,1765918-1766150	AT1G05840.1 CDS Eukaryotic aspartyl protease family protein [TAIR10] CDS gene_syn T20M3.11, T20M3_11 go_process proteolysis|GO:0006508||IEA go_function aspartic-type endopeptidase activity|GO:0004190||IEA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process proteolysis|GO:0006508||ISS product Eukaryotic aspartyl protease family protein note Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase aspartic (InterPro:IPR021109), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G02740.1); Has 3016 Blast hits to 2994 proteins in 298 species: Archae - 0; Bacteria - 0; Metazoa - 466; Fungi - 565; Plants - 1776; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink). protein_id AT1G05840.1p transcript_id AT1G05840.1 protein_id AT1G05840.1p transcript_id AT1G05840.1
At1g05850	chr1:001766833	0.0	C/1766833-1767250,1767352-1767511,1767730-1768117	AT1G05850.1 CDS Chitinase family protein [TAIR10] CDS gene_syn ATCTL1, CHITINASE-LIKE PROTEIN 1, CTL1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC ROOT HAIR 2, ELP, ELP1, ERH2, HOT2, POM-POM1, POM1, SENSITIVE TO HOT TEMPERATURES 2, T20M3.12, T20M3_12 gene POM1 function Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants. go_component endomembrane system|GO:0012505||IEA go_function chitinase activity|GO:0004568||IEA go_process response to heat|GO:0009408|10760305|IMP go_process response to water deprivation|GO:0009414|17156413|IMP go_process response to salt stress|GO:0009651|17156413|IMP go_process response to cytokinin stimulus|GO:0009735|11678273|IMP go_process lignin biosynthetic process|GO:0009809|16159327|IGI go_process multidimensional cell growth|GO:0009825|7743935|IMP go_process root epidermal cell differentiation|GO:0010053|9165126|IMP go_process regulation of salicylic acid metabolic process|GO:0010337|17156413|IMP go_process regulation of carbohydrate biosynthetic process|GO:0043255|16159327|IGI go_function chitinase activity|GO:0004568||ISS product Chitinase family protein note POM-POM1 (POM1); FUNCTIONS IN: chitinase activity; INVOLVED IN: in 9 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase-like protein 2 (TAIR:AT3G16920.1); Has 1965 Blast hits to 1960 proteins in 417 species: Archae - 0; Bacteria - 470; Metazoa - 35; Fungi - 5; Plants - 1415; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). protein_id AT1G05850.1p transcript_id AT1G05850.1 protein_id AT1G05850.1p transcript_id AT1G05850.1
AT1G05850	chr1:001766833	0.0	C/1766833-1767250,1767352-1767511,1767730-1768117	AT1G05850.2 AT1G05850.2 CDS Chitinase family protein
AT1G05860	chr1:001769061	0.0	W/1769061-1769638,1769763-1769856	AT1G05860.3 AT1G05860.3 CDS INO80 complex subunit D-like protein
At1g05860	chr1:001769061	0.0	W/1769061-1769638,1770085-1770349	AT1G05860.1 CDS INO80 complex subunit D-like protein [TAIR10] CDS gene_syn T20M3.13, T20M3_13 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 101 Blast hits to 100 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G05860.1p transcript_id AT1G05860.1 protein_id AT1G05860.1p transcript_id AT1G05860.1
AT1G05860	chr1:001769061	0.0	W/1769061-1769638,1770085-1770349	AT1G05860.2 AT1G05860.2 CDS INO80 complex subunit D-like protein
AT1G05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.10 AT1G05870.10 CDS hypothetical protein (DUF1685)
AT1G05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.11 AT1G05870.11 CDS hypothetical protein (DUF1685)
AT1G05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.12 AT1G05870.12 CDS hypothetical protein (DUF1685)
At1g05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.1 CDS hypothetical protein (DUF1685) [TAIR10] CDS gene_syn T20M3.14, T20M3_14 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1685) note Protein of unknown function (DUF1685); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2); Has 270 Blast hits to 270 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05870.1p transcript_id AT1G05870.1 protein_id AT1G05870.1p transcript_id AT1G05870.1
At1g05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.2 CDS hypothetical protein (DUF1685) [TAIR10] CDS gene_syn T20M3.14, T20M3_14 go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1685) note Protein of unknown function (DUF1685); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05870.2p transcript_id AT1G05870.2 protein_id AT1G05870.2p transcript_id AT1G05870.2
At1g05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.3 CDS hypothetical protein (DUF1685) [TAIR10] CDS gene_syn T20M3.14, T20M3_14 go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1685) note Protein of unknown function (DUF1685); FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2). protein_id AT1G05870.3p transcript_id AT1G05870.3 protein_id AT1G05870.3p transcript_id AT1G05870.3
At1g05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.4 CDS hypothetical protein (DUF1685) [TAIR10] CDS gene_syn T20M3.14, T20M3_14 go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1685) note Protein of unknown function (DUF1685); FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2). protein_id AT1G05870.4p transcript_id AT1G05870.4 protein_id AT1G05870.4p transcript_id AT1G05870.4
AT1G05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.5 AT1G05870.5 CDS hypothetical protein (DUF1685)
AT1G05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.6 AT1G05870.6 CDS hypothetical protein (DUF1685)
AT1G05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.7 AT1G05870.7 CDS hypothetical protein (DUF1685)
AT1G05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.8 AT1G05870.8 CDS hypothetical protein (DUF1685)
AT1G05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.9 AT1G05870.9 CDS hypothetical protein (DUF1685)
At1g05880	chr1:001775655	0.0	W/1775655-1775887,1775985-1776084,1776185-1776275,1776357-1776553,1776666-1776770,1776845-1776894,1776988-1777095,1777195-1777273,1777358-1777438,1777525-1777569,1777653-1777724,1777824-1777923,1778000-1778126,1778228-1778330	AT1G05880.2 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn ARABIDOPSIS ARIADNE 12, ARI12, ARIADNE 12, ATARI12, T20M3.15, T20M3_15 gene ARI12 go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND product RING/U-box superfamily protein note ARIADNE 12 (ARI12); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1). protein_id AT1G05880.2p transcript_id AT1G05880.2 protein_id AT1G05880.2p transcript_id AT1G05880.2
AT1G05880	chr1:001775655	0.0	W/1775655-1775887,1775985-1776084,1776185-1776275,1776357-1776553,1776666-1776770,1776845-1776894,1776988-1777095,1777195-1777273,1777358-1777438,1777525-1777569,1777653-1777724,1777824-1777923,1778000-1778175	AT1G05880.3 AT1G05880.3 CDS RING/U-box superfamily protein
At1g05880	chr1:001775655	0.0	W/1775655-1775887,1775985-1776084,1776185-1776275,1776357-1776553,1776687-1776770,1776845-1776894,1776988-1777095,1777195-1777273,1777358-1777438,1777525-1777569,1777653-1777724,1777824-1777923,1778000-1778126,1778228-1778330	AT1G05880.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn ARABIDOPSIS ARIADNE 12, ARI12, ARIADNE 12, ATARI12, T20M3.15, T20M3_15 gene ARI12 go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND product RING/U-box superfamily protein note ARIADNE 12 (ARI12); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 1339 Blast hits to 1333 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 646; Fungi - 141; Plants - 293; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink). protein_id AT1G05880.1p transcript_id AT1G05880.1 protein_id AT1G05880.1p transcript_id AT1G05880.1
At1g05890	chr1:001779631	0.0	W/1779631-1779786,1780174-1780298,1780526-1780631,1780720-1780810,1781087-1781259,1781695-1781799,1781927-1782015,1782191-1782298,1782454-1782544,1782650-1782739,1782821-1782868,1783162-1783233,1783319-1783412,1783502-1783628,1783983-1784166	AT1G05890.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn ARABIDOPSIS ARIADNE 5, ARI5, ARIADNE 5, ATARI5, T20M3.16, T20M3_16 gene ARI5 go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA product RING/U-box superfamily protein note ARIADNE 5 (ARI5); FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 3031 Blast hits to 3006 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 592; Plants - 643; Viruses - 7; Other Eukaryotes - 506 (source: NCBI BLink). protein_id AT1G05890.1p transcript_id AT1G05890.1 protein_id AT1G05890.1p transcript_id AT1G05890.1
At1g05890	chr1:001779631	0.0	W/1779631-1779869,1780023-1780065,1780174-1780298,1780526-1780631,1780720-1780810,1781087-1781259,1781695-1781799,1781927-1782015,1782191-1782298,1782454-1782544,1782650-1782739,1782821-1782868,1783162-1783233,1783319-1783412,1783502-1783628,1783983-1784166	AT1G05890.2 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn ARABIDOPSIS ARIADNE 5, ARI5, ARIADNE 5, ATARI5, T20M3.16, T20M3_16 gene ARI5 go_function zinc ion binding|GO:0008270||IEA product RING/U-box superfamily protein note ARIADNE 5 (ARI5); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1). protein_id AT1G05890.2p transcript_id AT1G05890.2 protein_id AT1G05890.2p transcript_id AT1G05890.2
At1g05894	chr1:001784831	0.0	W/1784831-1786204	AT1G05894.1 CDS hypothetical protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA product unknown protein note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05894.1p transcript_id AT1G05894.1 protein_id AT1G05894.1p transcript_id AT1G05894.1
At1g05900	chr1:001786896	0.0	W/1786896-1787043,1787148-1787266,1787451-1787517,1787617-1787688,1787786-1787910,1788222-1788288,1788415-1788506,1788697-1788834,1788921-1789025,1789162-1789245,1789359-1789502	AT1G05900.2 CDS endonuclease III 2 [TAIR10] CDS gene_syn ATNTH2, NTH2, T20M3.18, T20M3_18, endonuclease III 2 gene NTH2 go_component chloroplast nucleoid|GO:0042644|19372224|IDA go_process base-excision repair|GO:0006284|19372224|IDA go_process base-excision repair|GO:0006284||ISS go_function DNA N-glycosylase activity|GO:0019104|19372224|IDA product endonuclease III 2 note endonuclease III 2 (NTH2); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), Helix-hairpin-helix motif (InterPro:IPR000445), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT2G31450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05900.2p transcript_id AT1G05900.2 protein_id AT1G05900.2p transcript_id AT1G05900.2
At1g05900	chr1:001786896	0.0	W/1786896-1787043,1787148-1787266,1787451-1787517,1787617-1787688,1787786-1787910,1788222-1788288,1788415-1788506,1788697-1788834,1788921-1789037	AT1G05900.1 CDS endonuclease III 2 [TAIR10] CDS gene_syn ATNTH2, NTH2, T20M3.18, T20M3_18, endonuclease III 2 gene NTH2 go_component chloroplast nucleoid|GO:0042644|19372224|IDA go_process base-excision repair|GO:0006284|19372224|IDA go_process base-excision repair|GO:0006284||ISS go_function DNA N-glycosylase activity|GO:0019104|19372224|IDA product endonuclease III 2 note endonuclease III 2 (NTH2); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, conserved site-2 (InterPro:IPR004036), Helix-hairpin-helix motif (InterPro:IPR000445), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT2G31450.1); Has 11954 Blast hits to 11950 proteins in 2636 species: Archae - 340; Bacteria - 7920; Metazoa - 127; Fungi - 171; Plants - 73; Viruses - 0; Other Eukaryotes - 3323 (source: NCBI BLink). protein_id AT1G05900.1p transcript_id AT1G05900.1 protein_id AT1G05900.1p transcript_id AT1G05900.1
At1g05910	chr1:001790796	0.0	W/1790796-1791023,1791310-1791411,1791518-1793341,1793423-1793611,1793759-1793895,1794410-1794652,1795071-1795257,1795528-1795593,1795706-1795955,1796097-1796503	AT1G05910.1 CDS cell division cycle protein 48-related / CDC48-related [TAIR10] CDS gene_syn T20M3.19, T20M3_19 go_function nucleotide binding|GO:0000166||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_function ATP binding|GO:0005524||ISS product cell division cycle protein 48-related / CDC48-related note cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1); Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526; Bacteria - 25275; Metazoa - 14857; Fungi - 7046; Plants - 4267; Viruses - 557; Other Eukaryotes - 14126 (source: NCBI BLink). protein_id AT1G05910.1p transcript_id AT1G05910.1 protein_id AT1G05910.1p transcript_id AT1G05910.1
At1g05920	chr1:001797044	0.0	W/1797044-1797991	AT1G05920.1 CDS B3 domain protein (DUF313) [TAIR10] CDS gene_syn T20M3.20, T20M3_20 go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||IEA go_component cellular_component|GO:0005575||ND product Domain of unknown function (DUF313) note FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT3G24850.1); Has 196 Blast hits to 185 proteins in 22 species: Archae - 0; Bacteria - 7; Metazoa - 15; Fungi - 10; Plants - 139; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G05920.1p transcript_id AT1G05920.1 protein_id AT1G05920.1p transcript_id AT1G05920.1
At1g05925	chr1:001798901	0.0	C/1798901-1799062	AT1G05925.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G05925.1p transcript_id AT1G05925.1 protein_id AT1G05925.1p transcript_id AT1G05925.1
At1g05930	chr1:001799418	0.0	W/1799418-1800289,1800849-1800933	AT1G05930.1 CDS B3 domain protein (DUF313) [TAIR10] CDS go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||IEA go_component cellular_component|GO:0005575||ND product Domain of unknown function (DUF313) note FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT3G24850.1); Has 119 Blast hits to 119 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05930.1p transcript_id AT1G05930.1 protein_id AT1G05930.1p transcript_id AT1G05930.1
AT1G05940	chr1:001801365	0.0	C/1801365-1801502,1801579-1801674,1802024-1802260,1802357-1802533,1802646-1802870,1802942-1803118,1803198-1803503	AT1G05940.2 AT1G05940.2 CDS cationic amino acid transporter 9
At1g05940	chr1:001801365	0.0	C/1801365-1801502,1801579-1801674,1802024-1802260,1802357-1802533,1802646-1802870,1802942-1803118,1803198-1803607,1803693-1803942	AT1G05940.1 CDS cationic amino acid transporter 9 [TAIR10] CDS gene_syn CAT9, T21E18.1, T21E18_1, cationic amino acid transporter 9 gene CAT9 function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. go_component plasma membrane|GO:0005886|17151019|IDA go_process transport|GO:0006810||IEA go_process amino acid transport|GO:0006865||IEA go_process transmembrane transport|GO:0055085||IEA go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS product cationic amino acid transporter 9 note cationic amino acid transporter 9 (CAT9); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 4 (TAIR:AT3G03720.1); Has 34191 Blast hits to 33870 proteins in 2358 species: Archae - 527; Bacteria - 27519; Metazoa - 1917; Fungi - 2586; Plants - 410; Viruses - 0; Other Eukaryotes - 1232 (source: NCBI BLink). protein_id AT1G05940.1p transcript_id AT1G05940.1 protein_id AT1G05940.1p transcript_id AT1G05940.1
AT1G05940	chr1:001801561	0.0	C/1801561-1801674,1802024-1802260,1802357-1802533,1802646-1802870,1802942-1803118,1803198-1803607,1803693-1803942	AT1G05940.3 AT1G05940.3 CDS cationic amino acid transporter 9
AT1G05940	chr1:001801997	0.0	C/1801997-1802260,1802357-1802533,1802646-1802870,1802942-1803118,1803198-1803607,1803693-1803942	AT1G05940.4 AT1G05940.4 CDS cationic amino acid transporter 9
At1g05950	chr1:001804573	0.0	C/1804573-1804724,1804816-1804882,1804952-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.1 CDS hypothetical protein [TAIR10] CDS gene_syn T21E18.2, T21E18_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 50 Blast hits to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G05950.1p transcript_id AT1G05950.1 protein_id AT1G05950.1p transcript_id AT1G05950.1
AT1G05950	chr1:001804715	0.0	C/1804715-1804882,1804952-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.3 AT1G05950.3 CDS hypothetical protein
AT1G05950	chr1:001804872	0.0	C/1804872-1804882,1804963-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.5 AT1G05950.5 CDS hypothetical protein
AT1G05950	chr1:001804931	0.0	C/1804931-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.2 AT1G05950.2 CDS hypothetical protein
AT1G05950	chr1:001804931	0.0	C/1804931-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.4 AT1G05950.4 CDS hypothetical protein
At1g05960	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814328-1814390,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.2 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn T21E18.21, T21E18_21 go_function binding|GO:0005488||IEA go_process biological_process|GO:0008150||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1); Has 335 Blast hits to 327 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 143; Fungi - 47; Plants - 128; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G05960.2p transcript_id AT1G05960.2 protein_id AT1G05960.2p transcript_id AT1G05960.2
At1g05960	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn T21E18.21, T21E18_21 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function binding|GO:0005488||IEA go_process biological_process|GO:0008150||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1); Has 401 Blast hits to 394 proteins in 143 species: Archae - 0; Bacteria - 6; Metazoa - 142; Fungi - 117; Plants - 127; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G05960.1p transcript_id AT1G05960.1 protein_id AT1G05960.1p transcript_id AT1G05960.1
AT1G05960	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.3 AT1G05960.3 CDS ARM repeat superfamily protein
AT1G05960	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.4 AT1G05960.4 CDS ARM repeat superfamily protein
At1g05970	chr1:001816253	0.0	C/1816253-1816402,1816545-1816991	AT1G05970.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn T21E18.3, T21E18_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; Has 58 Blast hits to 58 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G05970.1p transcript_id AT1G05970.1 protein_id AT1G05970.1p transcript_id AT1G05970.1
At1g05970	chr1:001816253	0.0	C/1816253-1816408,1816545-1816991	AT1G05970.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn T21E18.3, T21E18_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G05970.2p transcript_id AT1G05970.2 protein_id AT1G05970.2p transcript_id AT1G05970.2
At1g05980	chr1:001817400	0.0	W/1817400-1817471	AT1G05980.1 [TAIR10] tRNA gene_syn 51952.TRNA-THR-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Thr (anticodon: TGT) transcript_id AT1G05980.1
At1g05990	chr1:001818588	0.0	W/1818588-1819040	AT1G05990.1 CDS EF hand calcium-binding protein family [TAIR10] CDS gene_syn RHS1, RHS2, ROOT HAIR SPECIFIC 1, ROOT HAIR SPECIFIC 2, T21E18.4, T21E18_4 gene RHS2 go_function calcium ion binding|GO:0005509||IEA go_component cellular_component|GO:0005575||ND go_function calcium ion binding|GO:0005509||ISS product EF hand calcium-binding protein family note EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G43290.1); Has 27146 Blast hits to 18777 proteins in 1639 species: Archae - 2; Bacteria - 228; Metazoa - 11784; Fungi - 5059; Plants - 5970; Viruses - 0; Other Eukaryotes - 4103 (source: NCBI BLink). protein_id AT1G05990.1p transcript_id AT1G05990.1 protein_id AT1G05990.1p transcript_id AT1G05990.1
At1g06000	chr1:001820495	0.0	C/1820495-1821802	AT1G06000.1 CDS UDP-Glycosyltransferase superfamily protein [TAIR10] CDS gene_syn T21E18.5, T21E18_5 function encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols go_component cellular_component|GO:0005575||ND go_process flavonol biosynthetic process|GO:0051555|17314094|IDA go_function UDP-glycosyltransferase activity|GO:0008194|17314094|IDA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-Glycosyltransferase superfamily protein note UDP-Glycosyltransferase superfamily protein; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 89B1 (TAIR:AT1G73880.1); Has 5632 Blast hits to 5556 proteins in 323 species: Archae - 0; Bacteria - 151; Metazoa - 482; Fungi - 23; Plants - 4909; Viruses - 43; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G06000.1p transcript_id AT1G06000.1 protein_id AT1G06000.1p transcript_id AT1G06000.1
At1g06002	chr1:001820977	0.0	W/1820977-1821918	AT1G06002.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G06000 product other RNA transcript_id AT1G06002.1
At1g06010	chr1:001823347	0.0	W/1823347-1823410,1823498-1823670	AT1G06010.1 CDS basic leucine zipper/W2 domain protein, putative [TAIR10] CDS gene_syn T21E18.6, T21E18_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06010.1p transcript_id AT1G06010.1 protein_id AT1G06010.1p transcript_id AT1G06010.1
At1g06020	chr1:001824548	0.0	W/1824548-1824949,1825314-1825646,1825725-1825841,1825916-1826101	AT1G06020.1 CDS pfkB-like carbohydrate kinase family protein [TAIR10] CDS gene_syn T21E18.7, T21E18_7 go_process sucrose biosynthetic process|GO:0005986||IEA go_process D-ribose metabolic process|GO:0006014||IEA go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA go_process acetate fermentation|GO:0019654||IEA go_function ribokinase activity|GO:0004747||IEA go_function kinase activity|GO:0016301||ISS product pfkB-like carbohydrate kinase family protein note pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; EXPRESSED IN: central cell, embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 19243 Blast hits to 19237 proteins in 2432 species: Archae - 396; Bacteria - 14376; Metazoa - 170; Fungi - 128; Plants - 499; Viruses - 0; Other Eukaryotes - 3674 (source: NCBI BLink). protein_id AT1G06020.1p transcript_id AT1G06020.1 protein_id AT1G06020.1p transcript_id AT1G06020.1
At1g06030	chr1:001826880	0.0	W/1826880-1827284,1827374-1827706,1827798-1827914,1827996-1828130	AT1G06030.1 CDS pfkB-like carbohydrate kinase family protein [TAIR10] CDS gene_syn T21E18.8, T21E18_8 go_process sucrose biosynthetic process|GO:0005986||IEA go_process D-ribose metabolic process|GO:0006014||IEA go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA go_process acetate fermentation|GO:0019654||IEA go_function ribokinase activity|GO:0004747||IEA go_function kinase activity|GO:0016301||ISS product pfkB-like carbohydrate kinase family protein note pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06020.1); Has 18996 Blast hits to 18990 proteins in 2425 species: Archae - 390; Bacteria - 14287; Metazoa - 160; Fungi - 120; Plants - 469; Viruses - 0; Other Eukaryotes - 3570 (source: NCBI BLink). protein_id AT1G06030.1p transcript_id AT1G06030.1 protein_id AT1G06030.1p transcript_id AT1G06030.1
At1g06040	chr1:001828662	0.0	C/1828662-1828904,1828987-1829307,1829477-1829659	AT1G06040.1 CDS B-box zinc finger family protein [TAIR10] CDS gene_syn SALT TOLERANCE, STO, T21E18.9, T21E18_9 gene STO function Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling. go_component nucleus|GO:0005634|17605755|IDA go_process response to light stimulus|GO:0009416|17605755|IEP go_process photomorphogenesis|GO:0009640|17605755|IGI go_process response to salt stress|GO:0009651|8662738|IGI go_process response to karrikin|GO:0080167|20351290|IEP go_function DNA binding|GO:0003677|8662738|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function protein binding|GO:0005515|11018516|IPI go_function zinc ion binding|GO:0008270||ISS product B-box zinc finger family protein note SALT TOLERANCE (STO); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1); Has 1912 Blast hits to 1325 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1809; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). protein_id AT1G06040.1p transcript_id AT1G06040.1 protein_id AT1G06040.1p transcript_id AT1G06040.1
At1g06040	chr1:001828957	0.0	C/1828957-1829307,1829477-1829659	AT1G06040.2 CDS B-box zinc finger family protein [TAIR10] CDS gene_syn SALT TOLERANCE, STO, T21E18.9, T21E18_9 gene STO function Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling. go_component nucleus|GO:0005634|17605755|IDA go_process response to light stimulus|GO:0009416|17605755|IEP go_process photomorphogenesis|GO:0009640|17605755|IGI go_process response to salt stress|GO:0009651|8662738|IGI go_process response to karrikin|GO:0080167|20351290|IEP go_function DNA binding|GO:0003677|8662738|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function protein binding|GO:0005515|11018516|IPI go_function zinc ion binding|GO:0008270||ISS product B-box zinc finger family protein note SALT TOLERANCE (STO); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1); Has 1915 Blast hits to 1323 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1814; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G06040.2p transcript_id AT1G06040.2 protein_id AT1G06040.2p transcript_id AT1G06040.2
AT1G06045	chr1:001829522	0.0	W/1829522-1829688,1829766-1829865	AT1G06045.1 AT1G06045.1 CDS hypothetical protein
At1g06050	chr1:001830726	0.0	C/1830726-1831667	AT1G06050.1 CDS ENHANCED DISEASE RESISTANCE-like protein (DUF1336) [TAIR10] CDS gene_syn T21E18.10, T21E18_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1336) note Protein of unknown function (DUF1336); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT5G10750.1); Has 364 Blast hits to 356 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). protein_id AT1G06050.1p transcript_id AT1G06050.1 protein_id AT1G06050.1p transcript_id AT1G06050.1
At1g06060	chr1:001833071	0.0	W/1833071-1833097,1833420-1833561,1833655-1833802,1833886-1833961,1834069-1834180,1834275-1834366,1834472-1834516	AT1G06060.1 CDS LisH and RanBPM domains containing protein [TAIR10] CDS gene_syn T21E18.11, T21E18_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product LisH and RanBPM domains containing protein note LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 872 Blast hits to 770 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 136; Plants - 208; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). protein_id AT1G06060.1p transcript_id AT1G06060.1 protein_id AT1G06060.1p transcript_id AT1G06060.1
AT1G06060	chr1:001833071	0.0	W/1833071-1833097,1833420-1833561,1833655-1833802,1833886-1833961,1834069-1834180,1834275-1834405	AT1G06060.2 AT1G06060.2 CDS LisH and RanBPM domains containing protein
At1g06070	chr1:001835201	0.0	C/1835201-1835607,1835945-1836029,1836114-1836246,1836470-1837116	AT1G06070.1 CDS Basic-leucine zipper (bZIP) transcription factor family protein [TAIR10] CDS gene_syn T21E18.12, T21E18_12 go_component chloroplast|GO:0009507||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS product Basic-leucine zipper (bZIP) transcription factor family protein note Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G31370.5); Has 39307 Blast hits to 17494 proteins in 873 species: Archae - 8; Bacteria - 1528; Metazoa - 14762; Fungi - 4294; Plants - 2852; Viruses - 384; Other Eukaryotes - 15479 (source: NCBI BLink). protein_id AT1G06070.1p transcript_id AT1G06070.1 protein_id AT1G06070.1p transcript_id AT1G06070.1
At1g06080	chr1:001843661	0.0	W/1843661-1843990,1844629-1844769,1844846-1844986,1845102-1845208,1845895-1846093	AT1G06080.1 CDS delta 9 desaturase 1 [TAIR10] CDS gene_syn ADS1, DELTA 9 DESATURASE, T21E18.13, T21E18_13, delta 9 desaturase 1 gene ADS1 function homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. go_process lipid metabolic process|GO:0006629||IEA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water|GO:0016717||IEA go_function oxidoreductase activity|GO:0016491||ISS product delta 9 desaturase 1 note delta 9 desaturase 1 (ADS1); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: 16:0delta9 desaturase 2 (TAIR:AT2G31360.1); Has 3455 Blast hits to 3455 proteins in 832 species: Archae - 0; Bacteria - 1551; Metazoa - 796; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 764 (source: NCBI BLink). protein_id AT1G06080.1p transcript_id AT1G06080.1 protein_id AT1G06080.1p transcript_id AT1G06080.1
AT1G06080	chr1:001843661	0.0	W/1843661-1843990,1844629-1844769,1844846-1845058	AT1G06080.2 AT1G06080.2 CDS delta 9 desaturase 1
At1g06090	chr1:001847921	0.0	W/1847921-1848232,1848316-1848456,1848589-1848729,1849109-1849215,1849302-1849500	AT1G06090.1 CDS Fatty acid desaturase family protein [TAIR10] CDS gene_syn T21E18.14, T21E18_14 go_process lipid metabolic process|GO:0006629||IEA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water|GO:0016717||IEA go_component cellular_component|GO:0005575||ND go_function oxidoreductase activity|GO:0016491||ISS product Fatty acid desaturase family protein note Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06120.1); Has 3429 Blast hits to 3429 proteins in 832 species: Archae - 0; Bacteria - 1555; Metazoa - 791; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 739 (source: NCBI BLink). protein_id AT1G06090.1p transcript_id AT1G06090.1 protein_id AT1G06090.1p transcript_id AT1G06090.1
At1g06100	chr1:001851530	0.0	W/1851530-1851841,1851957-1852097,1852223-1852363,1852612-1852718,1852821-1853019	AT1G06100.1 CDS Fatty acid desaturase family protein [TAIR10] CDS gene_syn T21E18.15, T21E18_15 go_process lipid metabolic process|GO:0006629||IEA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water|GO:0016717||IEA go_function oxidoreductase activity|GO:0016491||ISS product Fatty acid desaturase family protein note Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06090.1); Has 3412 Blast hits to 3412 proteins in 822 species: Archae - 0; Bacteria - 1532; Metazoa - 796; Fungi - 236; Plants - 106; Viruses - 4; Other Eukaryotes - 738 (source: NCBI BLink). protein_id AT1G06100.1p transcript_id AT1G06100.1 protein_id AT1G06100.1p transcript_id AT1G06100.1
At1g06110	chr1:001853237	0.0	C/1853237-1853315,1853405-1853511,1853615-1853833,1853915-1854616,1854735-1854938	AT1G06110.1 CDS SKP1/ASK-interacting protein 16 [TAIR10] CDS gene_syn SKIP16, SKP1/ASK-interacting protein 16, T21E18.16, T21E18_16 gene SKIP16 go_component SCF ubiquitin ligase complex|GO:0019005|12795696|IPI go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|12795696|IPI product SKP1/ASK-interacting protein 16 note SKP1/ASK-interacting protein 16 (SKIP16); CONTAINS InterPro DOMAIN/s: ApaG (InterPro:IPR007474); Has 2063 Blast hits to 2061 proteins in 779 species: Archae - 0; Bacteria - 1378; Metazoa - 194; Fungi - 63; Plants - 89; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT1G06110.1p transcript_id AT1G06110.1 protein_id AT1G06110.1p transcript_id AT1G06110.1
AT1G06110	chr1:001853609	0.0	C/1853609-1853833,1853915-1854616,1854735-1854938	AT1G06110.2 AT1G06110.2 CDS SKP1/ASK-interacting protein 16
AT1G06110	chr1:001853719	0.0	C/1853719-1853733,1853915-1854616,1854735-1854938	AT1G06110.3 AT1G06110.3 CDS SKP1/ASK-interacting protein 16
At1g06120	chr1:001855963	0.0	W/1855963-1856274,1856355-1856495,1856623-1856763,1857125-1857231,1857318-1857516	AT1G06120.1 CDS Fatty acid desaturase family protein [TAIR10] CDS gene_syn T21E18.17, T21E18_17 go_process lipid metabolic process|GO:0006629||IEA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water|GO:0016717||IEA go_function oxidoreductase activity|GO:0016491||ISS product Fatty acid desaturase family protein note Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06090.1); Has 3427 Blast hits to 3427 proteins in 832 species: Archae - 0; Bacteria - 1554; Metazoa - 794; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 735 (source: NCBI BLink). protein_id AT1G06120.1p transcript_id AT1G06120.1 protein_id AT1G06120.1p transcript_id AT1G06120.1
At1g06130	chr1:001858034	0.0	C/1858034-1858186,1858334-1858432,1858518-1858592,1858693-1858793,1859329-1859452,1859561-1859764,1859980-1860162,1860587-1860640	AT1G06130.2 CDS glyoxalase 2-4 [TAIR10] CDS gene_syn GLX2-4, T21E18.18, T21E18_18, glyoxalase 2-4 gene GLX2-4 go_component chloroplast|GO:0009507|18431481|IDA go_function hydroxyacylglutathione hydrolase activity|GO:0004416||IEA go_function zinc ion binding|GO:0008270||IEA go_function hydrolase activity|GO:0016787||IEA go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS product glyoxalase 2-4 note glyoxalase 2-4 (GLX2-4); FUNCTIONS IN: hydrolase activity, hydroxyacylglutathione hydrolase activity, zinc ion binding; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: glyoxalase 2-5 (TAIR:AT2G31350.2); Has 15453 Blast hits to 15452 proteins in 2500 species: Archae - 395; Bacteria - 9967; Metazoa - 477; Fungi - 329; Plants - 213; Viruses - 0; Other Eukaryotes - 4072 (source: NCBI BLink). protein_id AT1G06130.2p transcript_id AT1G06130.2 protein_id AT1G06130.2p transcript_id AT1G06130.2
At1g06130	chr1:001858034	0.0	C/1858034-1858186,1858334-1858432,1858518-1858592,1858693-1858793,1859329-1859452,1859561-1859764,1859980-1860165,1860587-1860640	AT1G06130.1 CDS glyoxalase 2-4 [TAIR10] CDS gene_syn GLX2-4, T21E18.18, T21E18_18, glyoxalase 2-4 gene GLX2-4 go_component chloroplast|GO:0009507|18431481|IDA go_function hydroxyacylglutathione hydrolase activity|GO:0004416||IEA go_function zinc ion binding|GO:0008270||IEA go_function hydrolase activity|GO:0016787||IEA go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS product glyoxalase 2-4 note glyoxalase 2-4 (GLX2-4); FUNCTIONS IN: hydrolase activity, zinc ion binding, hydroxyacylglutathione hydrolase activity; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: glyoxalase 2-5 (TAIR:AT2G31350.1); Has 15456 Blast hits to 15455 proteins in 2500 species: Archae - 395; Bacteria - 9969; Metazoa - 478; Fungi - 329; Plants - 213; Viruses - 0; Other Eukaryotes - 4072 (source: NCBI BLink). protein_id AT1G06130.1p transcript_id AT1G06130.1 protein_id AT1G06130.1p transcript_id AT1G06130.1
At1g06135	chr1:001862307	0.0	W/1862307-1862516	AT1G06135.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31345.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06135.1p transcript_id AT1G06135.1 protein_id AT1G06135.1p transcript_id AT1G06135.1
At1g06137	chr1:001863544	0.0	C/1863544-1863750	AT1G06137.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06135.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G06137.1p transcript_id AT1G06137.1 protein_id AT1G06137.1p transcript_id AT1G06137.1
At1g06140	chr1:001864796	0.0	W/1864796-1866472	AT1G06140.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn T21E18.19, T21E18_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 38916 Blast hits to 13813 proteins in 232 species: Archae - 0; Bacteria - 13; Metazoa - 106; Fungi - 93; Plants - 38173; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink). protein_id AT1G06140.1p transcript_id AT1G06140.1 protein_id AT1G06140.1p transcript_id AT1G06140.1
AT1G06143	chr1:001867129	0.0	C/1867129-1868862	AT1G06143.1 AT1G06143.1 CDS basic helix loop helix DNA-binding superfamily protein
At1g06150	chr1:001869228	0.0	C/1869228-1869311,1869599-1869724,1869863-1870003,1870157-1870258,1870367-1871575,1871667-1871786,1871914-1871973,1872226-1872267,1872350-1872431,1872745-1872888,1873100-1873194	AT1G06150.1 CDS basic helix loop helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn AtRLP53, EMB1444, EMBRYO DEFECTIVE 1444, T21E18.20, T21E18_20, receptor like protein 53 gene EMB1444 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note EMBRYO DEFECTIVE 1444 (EMB1444); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1); Has 563 Blast hits to 411 proteins in 68 species: Archae - 0; Bacteria - 54; Metazoa - 32; Fungi - 13; Plants - 398; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). protein_id AT1G06150.1p transcript_id AT1G06150.1 protein_id AT1G06150.1p transcript_id AT1G06150.1
At1g06150	chr1:001869228	0.0	C/1869228-1869311,1869599-1869724,1869863-1870009,1870157-1870258,1870367-1871575,1871667-1871786,1871914-1871973,1872226-1872267,1872350-1872431,1872745-1872888,1873100-1873194	AT1G06150.2 CDS basic helix loop helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn AtRLP53, EMB1444, EMBRYO DEFECTIVE 1444, T21E18.20, T21E18_20, receptor like protein 53 gene EMB1444 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1). protein_id AT1G06150.2p transcript_id AT1G06150.2 protein_id AT1G06150.2p transcript_id AT1G06150.2
At1g06149	chr1:001873360	0.0	C/1873360-1873464	AT1G06149.1 CDS conserved peptide upstream open reading frame 8 [TAIR10] CDS gene_syn CPuORF8, conserved peptide upstream open reading frame 8 gene CPuORF8 function Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF8 represents a conserved upstream opening reading frame relative to major ORF AT1G06150.1 product conserved peptide upstream open reading frame 8 note conserved peptide upstream open reading frame 8 (CPuORF8); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G06149.1p transcript_id AT1G06149.1 protein_id AT1G06149.1p transcript_id AT1G06149.1
At1g06148	chr1:001875301	0.0	C/1875301-1875328,1876840-1876955,1877043-1877150	AT1G06148.2 CDS hypothetical protein [TAIR10] CDS function Unknown gene go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06148.2p transcript_id AT1G06148.2 protein_id AT1G06148.2p transcript_id AT1G06148.2
At1g06148	chr1:001876836	0.0	C/1876836-1876955,1877043-1877150	AT1G06148.1 CDS hypothetical protein [TAIR10] CDS function Unknown gene go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06148.1p transcript_id AT1G06148.1 protein_id AT1G06148.1p transcript_id AT1G06148.1
At1g06160	chr1:001883046	0.0	W/1883046-1883780	AT1G06160.1 CDS octadecanoid-responsive Arabidopsis AP2/ERF 59 [TAIR10] CDS gene_syn F9P14.2, F9P14_2, ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 gene ORA59 function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|TAS go_process response to ethylene stimulus|GO:0009723|18467450|IEP go_process response to jasmonic acid stimulus|GO:0009753|18467450|IEP go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|18467450|IMP go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS go_process defense response to fungus|GO:0050832|18467450|IMP go_function DNA binding|GO:0003677|10715325|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10715325|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9687012|TAS go_function transcription activator activity|GO:0016563|10715325|TAS product octadecanoid-responsive Arabidopsis AP2/ERF 59 note octadecanoid-responsive Arabidopsis AP2/ERF 59 (ORA59); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding factor 15 (TAIR:AT2G31230.1); Has 6527 Blast hits to 6261 proteins in 388 species: Archae - 0; Bacteria - 36; Metazoa - 435; Fungi - 42; Plants - 5810; Viruses - 4; Other Eukaryotes - 200 (source: NCBI BLink). protein_id AT1G06160.1p transcript_id AT1G06160.1 protein_id AT1G06160.1p transcript_id AT1G06160.1
At1g06170	chr1:001885146	0.0	C/1885146-1885268,1885341-1885748,1885833-1886564	AT1G06170.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F9P14.3, F9P14_3 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31220.1); Has 1258 Blast hits to 1258 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1252; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G06170.1p transcript_id AT1G06170.1 protein_id AT1G06170.1p transcript_id AT1G06170.1
At1g06170	chr1:001885146	0.0	C/1885146-1885268,1885341-1885748,1885833-1886564	AT1G06170.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F9P14.3, F9P14_3 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06170.2p transcript_id AT1G06170.2 protein_id AT1G06170.2p transcript_id AT1G06170.2
At1g06180	chr1:001889510	0.0	W/1889510-1889642,1889797-1889926,1890612-1891089	AT1G06180.1 CDS myb domain protein 13 [TAIR10] CDS gene_syn ATMYB13, ATMYBLFGN, F9P14.4, F9P14_4, MYB13, myb domain protein 13 gene MYB13 function member of MYB3R- and R2R3- type MYB- encoding genes go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS go_process response to salt stress|GO:0009651|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb domain protein 13 note myb domain protein 13 (MYB13); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 14 (TAIR:AT2G31180.1); Has 8947 Blast hits to 8242 proteins in 510 species: Archae - 0; Bacteria - 0; Metazoa - 809; Fungi - 464; Plants - 5950; Viruses - 6; Other Eukaryotes - 1718 (source: NCBI BLink). protein_id AT1G06180.1p transcript_id AT1G06180.1 protein_id AT1G06180.1p transcript_id AT1G06180.1
AT1G06190	chr1:001892467	0.0	C/1892467-1893366	AT1G06190.3 AT1G06190.3 CDS Rho termination factor
AT1G06190	chr1:001892467	0.0	C/1892467-1893366	AT1G06190.4 AT1G06190.4 CDS Rho termination factor
At1g06190	chr1:001892467	0.0	C/1892467-1893626,1894033-1894078	AT1G06190.1 CDS Rho termination factor [TAIR10] CDS gene_syn F9P14.5, F9P14_5 go_component chloroplast|GO:0009507|18431481|IDA go_process transcription termination|GO:0006353||IEA go_process ATP biosynthetic process|GO:0006754||IEA go_function transcription termination factor activity|GO:0003715||IEA go_function ATP binding|GO:0005524||IEA go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||IEA product Rho termination factor note Rho termination factor; FUNCTIONS IN: transcription termination factor activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: transcription termination, ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6; Bacteria - 275; Metazoa - 547; Fungi - 247; Plants - 133; Viruses - 50; Other Eukaryotes - 630 (source: NCBI BLink). protein_id AT1G06190.1p transcript_id AT1G06190.1 protein_id AT1G06190.1p transcript_id AT1G06190.1
AT1G06190	chr1:001892467	0.0	C/1892467-1893681	AT1G06190.5 AT1G06190.5 CDS Rho termination factor
At1g06190	chr1:001892589	0.0	C/1892589-1892640,1892846-1893626,1894033-1894078	AT1G06190.2 CDS Rho termination factor [TAIR10] CDS gene_syn F9P14.5, F9P14_5 go_component chloroplast|GO:0009507|18431481|IDA go_process ATP biosynthetic process|GO:0006754||IEA go_function ATP binding|GO:0005524||IEA go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||IEA product Rho termination factor note Rho termination factor; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 63 Blast hits to 63 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 41; Viruses - 3; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G06190.2p transcript_id AT1G06190.2 protein_id AT1G06190.2p transcript_id AT1G06190.2
At1g06200	chr1:001894604	0.0	C/1894604-1894688,1894787-1894893,1894991-1895174,1895762-1895934,1896781-1896852	AT1G06200.1 CDS Peptidase S24/S26A/S26B/S26C family protein [TAIR10] CDS gene_syn F9P14.6, F9P14_6 product Peptidase S24/S26A/S26B/S26C family protein note Peptidase S24/S26A/S26B/S26C family protein; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT2G31140.1); Has 259 Blast hits to 259 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 68; Fungi - 34; Plants - 130; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G06200.1p transcript_id AT1G06200.1 protein_id AT1G06200.1p transcript_id AT1G06200.1
AT1G06200	chr1:001894604	0.0	C/1894604-1894688,1894787-1894893,1894991-1895174,1895762-1895934,1896781-1896963	AT1G06200.2 AT1G06200.2 CDS Peptidase S24/S26A/S26B/S26C family protein
At1g06210	chr1:001897567	0.0	W/1897567-1898052,1898141-1898422,1898603-1898986	AT1G06210.1 CDS ENTH/VHS/GAT family protein [TAIR10] CDS gene_syn F9P14.7, F9P14_7 go_component intracellular|GO:0005622||IEA go_process intracellular protein transport|GO:0006886||IEA go_component Golgi stack|GO:0005795||ISS go_process intracellular protein transport|GO:0006886||ISS go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS go_function protein transporter activity|GO:0008565||ISS product ENTH/VHS/GAT family protein note ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT5G16880.2); Has 1326 Blast hits to 1324 proteins in 178 species: Archae - 0; Bacteria - 6; Metazoa - 730; Fungi - 235; Plants - 256; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). protein_id AT1G06210.1p transcript_id AT1G06210.1 protein_id AT1G06210.1p transcript_id AT1G06210.1
At1g06210	chr1:001897567	0.0	W/1897567-1898052,1898141-1898494	AT1G06210.2 CDS ENTH/VHS/GAT family protein [TAIR10] CDS gene_syn F9P14.7, F9P14_7 go_process intracellular protein transport|GO:0006886||IEA go_component Golgi stack|GO:0005795||ISS go_process intracellular protein transport|GO:0006886||ISS go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS go_function protein transporter activity|GO:0008565||ISS product ENTH/VHS/GAT family protein note ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT5G16880.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06210.2p transcript_id AT1G06210.2 protein_id AT1G06210.2p transcript_id AT1G06210.2
At1g06220	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.1 CDS Ribosomal protein S5/Elongation factor G/III/V family protein [TAIR10] CDS gene_syn CLO, CLOTHO, F9P14.8, F9P14_8, GAMETOPHYTE FACTOR 1, GFA1, MATERNAL EFFECT EMBRYO ARREST 5, MEE5 gene MEE5 function Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_component nuclear speck|GO:0016607|18702672|IDA go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process regulation of embryo sac egg cell differentiation|GO:0045694|18702672|IMP go_function translation elongation factor activity|GO:0003746||ISS go_function translation factor activity, nucleic acid binding|GO:0008135||ISS product Ribosomal protein S5/Elongation factor G/III/V family protein note MATERNAL EFFECT EMBRYO ARREST 5 (MEE5); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: regulation of embryo sac egg cell differentiation, embryo development ending in seed dormancy; LOCATED IN: nuclear speck, cell wall, plasma membrane; EXPRESSED IN: whole plant, cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT5G25230.1); Has 61019 Blast hits to 57504 proteins in 4658 species: Archae - 1314; Bacteria - 38464; Metazoa - 2393; Fungi - 1714; Plants - 1333; Viruses - 1; Other Eukaryotes - 15800 (source: NCBI BLink). protein_id AT1G06220.1p transcript_id AT1G06220.1 protein_id AT1G06220.1p transcript_id AT1G06220.1
At1g06220	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.2 CDS Ribosomal protein S5/Elongation factor G/III/V family protein [TAIR10] CDS gene_syn CLO, CLOTHO, F9P14.8, F9P14_8, GAMETOPHYTE FACTOR 1, GFA1, MATERNAL EFFECT EMBRYO ARREST 5, MEE5 gene MEE5 function Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_component nuclear speck|GO:0016607|18702672|IDA go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process regulation of embryo sac egg cell differentiation|GO:0045694|18702672|IMP go_function translation elongation factor activity|GO:0003746||ISS go_function translation factor activity, nucleic acid binding|GO:0008135||ISS product Ribosomal protein S5/Elongation factor G/III/V family protein note MATERNAL EFFECT EMBRYO ARREST 5 (MEE5); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: regulation of embryo sac egg cell differentiation, embryo development ending in seed dormancy; LOCATED IN: nuclear speck, cell wall, plasma membrane; EXPRESSED IN: whole plant, cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT5G25230.1); Has 61019 Blast hits to 57504 proteins in 4658 species: Archae - 1314; Bacteria - 38464; Metazoa - 2393; Fungi - 1714; Plants - 1333; Viruses - 1; Other Eukaryotes - 15800 (source: NCBI BLink). protein_id AT1G06220.2p transcript_id AT1G06220.2 protein_id AT1G06220.2p transcript_id AT1G06220.2
AT1G06220	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.3 AT1G06220.3 CDS Ribosomal protein S5/Elongation factor G/III/V family protein
At1g06225	chr1:001905975	0.0	W/1905975-1906226	AT1G06225.1 CDS CLAVATA3/ESR-RELATED 3 [TAIR10] CDS gene_syn CLAVATA3/ESR-RELATED 3, CLE3 gene CLE3 function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. go_component apoplast|GO:0048046|11457943|RCA go_process signal transduction|GO:0007165||ISS go_function receptor binding|GO:0005102||ISS product CLAVATA3/ESR-RELATED 3 note CLAVATA3/ESR-RELATED 3 (CLE3); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 4 (TAIR:AT2G31081.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06225.1p transcript_id AT1G06225.1 protein_id AT1G06225.1p transcript_id AT1G06225.1
At1g06230	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.1 CDS global transcription factor group E4 [TAIR10] CDS gene_syn F9P14.9, F9P14_9, GTE4, global transcription factor group E4 gene GTE4 function This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation. go_component cellular_component|GO:0005575||ND go_process cell cycle|GO:0007049|20032077|IMP go_process DNA mediated transformation|GO:0009294|17827277|IMP go_process root development|GO:0048364|20032077|IMP go_function DNA binding|GO:0003677||ISS product global transcription factor group E4 note global transcription factor group E4 (GTE4); CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1); Has 9656 Blast hits to 6188 proteins in 362 species: Archae - 8; Bacteria - 274; Metazoa - 4793; Fungi - 1365; Plants - 669; Viruses - 49; Other Eukaryotes - 2498 (source: NCBI BLink). protein_id AT1G06230.1p transcript_id AT1G06230.1 protein_id AT1G06230.1p transcript_id AT1G06230.1
At1g06230	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.2 CDS global transcription factor group E4 [TAIR10] CDS gene_syn F9P14.9, F9P14_9, GTE4, global transcription factor group E4 gene GTE4 function This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation. go_component cellular_component|GO:0005575||ND go_process cell cycle|GO:0007049|20032077|IMP go_process DNA mediated transformation|GO:0009294|17827277|IMP go_process root development|GO:0048364|20032077|IMP go_function DNA binding|GO:0003677||ISS product global transcription factor group E4 note global transcription factor group E4 (GTE4); CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1); Has 9656 Blast hits to 6188 proteins in 362 species: Archae - 8; Bacteria - 274; Metazoa - 4793; Fungi - 1365; Plants - 669; Viruses - 49; Other Eukaryotes - 2498 (source: NCBI BLink). protein_id AT1G06230.2p transcript_id AT1G06230.2 protein_id AT1G06230.2p transcript_id AT1G06230.2
At1g06230	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.3 CDS global transcription factor group E4 [TAIR10] CDS gene_syn F9P14.9, F9P14_9, GTE4, global transcription factor group E4 gene GTE4 function This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation. go_component cellular_component|GO:0005575||ND go_process cell cycle|GO:0007049|20032077|IMP go_process DNA mediated transformation|GO:0009294|17827277|IMP go_process root development|GO:0048364|20032077|IMP go_function DNA binding|GO:0003677||ISS product global transcription factor group E4 note global transcription factor group E4 (GTE4); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation, cell cycle, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1). protein_id AT1G06230.3p transcript_id AT1G06230.3 protein_id AT1G06230.3p transcript_id AT1G06230.3
AT1G06230	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.4 AT1G06230.4 CDS global transcription factor group E4
At1g06240	chr1:001911166	0.0	W/1911166-1911567,1911642-1911883,1911969-1912065,1912156-1912339,1912441-1912522,1912629-1912701,1912804-1912875	AT1G06240.1 CDS diiron containing four-helix bundle family ferritin protein, putative (Protein of unknown function DUF455) [TAIR10] CDS gene_syn F9P14.10, F9P14_10 go_process biological_process|GO:0008150||ND product Protein of unknown function DUF455 note Protein of unknown function DUF455; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF455 (TAIR:AT5G04520.1); Has 954 Blast hits to 954 proteins in 412 species: Archae - 0; Bacteria - 697; Metazoa - 13; Fungi - 46; Plants - 75; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G06240.1p transcript_id AT1G06240.1 protein_id AT1G06240.1p transcript_id AT1G06240.1
AT1G06250	chr1:001913339	0.0	C/1913339-1914016,1914190-1914441	AT1G06250.2 AT1G06250.2 CDS alpha/beta-Hydrolases superfamily protein
At1g06250	chr1:001913339	0.0	C/1913339-1914016,1914190-1914547,1914615-1914850	AT1G06250.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F9P14.11, F9P14_11 go_process lipid metabolic process|GO:0006629||IEA go_function triglyceride lipase activity|GO:0004806||IEA go_component cellular_component|GO:0005575||ND go_process lipid metabolic process|GO:0006629||ISS go_function triglyceride lipase activity|GO:0004806||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G31100.1); Has 1168 Blast hits to 1158 proteins in 211 species: Archae - 0; Bacteria - 223; Metazoa - 26; Fungi - 117; Plants - 633; Viruses - 4; Other Eukaryotes - 165 (source: NCBI BLink). protein_id AT1G06250.1p transcript_id AT1G06250.1 protein_id AT1G06250.1p transcript_id AT1G06250.1
At1g06265	chr1:001914943	0.0	C/1914943-1915863,1915956-1916154,1916292-1916361,1916476-1917028,1917115-1917221,1917302-1917661	AT1G06265.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G06260 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G06265.1
At1g06265	chr1:001915008	0.0	C/1915008-1915863,1915956-1916278	AT1G06265.2 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G06260 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G06265.2
At1g06260	chr1:001916449	0.0	W/1916449-1916893,1916999-1917585	AT1G06260.1 CDS Cysteine proteinases superfamily protein [TAIR10] CDS gene_syn F9P14.12, F9P14_12 go_component endomembrane system|GO:0012505||IEA go_process proteolysis|GO:0006508||IEA go_function cysteine-type endopeptidase activity|GO:0004197||IEA go_function cysteine-type peptidase activity|GO:0008234||IEA go_process proteolysis|GO:0006508||ISS go_function cysteine-type peptidase activity|GO:0008234||ISS product Cysteine proteinases superfamily protein note Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT3G19390.1); Has 7835 Blast hits to 7772 proteins in 746 species: Archae - 66; Bacteria - 269; Metazoa - 3267; Fungi - 4; Plants - 1872; Viruses - 136; Other Eukaryotes - 2221 (source: NCBI BLink). protein_id AT1G06260.1p transcript_id AT1G06260.1 protein_id AT1G06260.1p transcript_id AT1G06260.1
At1g06270	chr1:001918242	0.0	C/1918242-1919273	AT1G06270.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F9P14.13, F9P14_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 12812 Blast hits to 4675 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 12587; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink). protein_id AT1G06270.1p transcript_id AT1G06270.1 protein_id AT1G06270.1p transcript_id AT1G06270.1
AT1G06270	chr1:001918242	0.0	C/1918242-1919273	AT1G06270.2 AT1G06270.2 CDS Pentatricopeptide repeat (PPR) superfamily protein
AT1G06270	chr1:001918242	0.0	C/1918242-1919273	AT1G06270.3 AT1G06270.3 CDS Pentatricopeptide repeat (PPR) superfamily protein
At1g06280	chr1:001920327	0.0	C/1920327-1920947	AT1G06280.1 CDS LOB domain-containing protein 2 [TAIR10] CDS gene_syn F9P14.14, F9P14_14, LBD2, LOB domain-containing protein 2 gene LBD2 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND product LOB domain-containing protein 2 note LOB domain-containing protein 2 (LBD2); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT1G65620.4); Has 899 Blast hits to 894 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 888; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G06280.1p transcript_id AT1G06280.1 protein_id AT1G06280.1p transcript_id AT1G06280.1
At1g06290	chr1:001922423	0.0	W/1922423-1922892,1923141-1923258,1923353-1923460,1923570-1923742,1923822-1923921,1924009-1924083,1924193-1924323,1924465-1924600,1924686-1924805,1924897-1925043,1925138-1925242,1925341-1925442,1925760-1926002	AT1G06290.1 CDS acyl-CoA oxidase 3 [TAIR10] CDS gene_syn ACX3, ATACX3, acyl-CoA oxidase 3 gene ACX3 function Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids. go_component peroxisome|GO:0005777||IEA go_component peroxisome|GO:0005777||ISS go_process fatty acid beta-oxidation|GO:0006635|15743450|TAS go_process fatty acid beta-oxidation|GO:0006635||ISS go_process medium-chain fatty acid metabolic process|GO:0051791|15743450|TAS go_function acyl-CoA oxidase activity|GO:0003997|15743450|TAS go_function acyl-CoA oxidase activity|GO:0003997||ISS product acyl-CoA oxidase 3 note acyl-CoA oxidase 3 (ACX3); FUNCTIONS IN: acyl-CoA oxidase activity; INVOLVED IN: medium-chain fatty acid metabolic process, fatty acid beta-oxidation; LOCATED IN: peroxisome; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA oxidase/dehydrogenase, central domain (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 6 (TAIR:AT1G06310.1); Has 12520 Blast hits to 12510 proteins in 1399 species: Archae - 229; Bacteria - 8347; Metazoa - 1502; Fungi - 589; Plants - 297; Viruses - 0; Other Eukaryotes - 1556 (source: NCBI BLink). protein_id AT1G06290.1p transcript_id AT1G06290.1 protein_id AT1G06290.1p transcript_id AT1G06290.1
At1g06310	chr1:001926802	0.0	W/1926802-1927271,1927360-1927477,1927555-1927662,1927737-1927909,1927995-1928094,1928178-1928252,1928363-1928493,1928735-1928870,1928959-1929078,1929162-1929308,1929392-1929496,1929581-1929682,1929985-1930227	AT1G06310.1 CDS acyl-CoA oxidase 6 [TAIR10] CDS gene_syn ACX6, T2D23.2, T2D23_2, acyl-CoA oxidase 6 gene ACX6 function Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo. go_component peroxisome|GO:0005777||IEA go_process fatty acid metabolic process|GO:0006631||IEA go_process fatty acid beta-oxidation|GO:0006635||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function acyl-CoA dehydrogenase activity|GO:0003995||IEA go_function acyl-CoA oxidase activity|GO:0003997||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA go_function FAD binding|GO:0050660||IEA go_component peroxisome|GO:0005777||ISS go_process fatty acid beta-oxidation|GO:0006635||ISS go_function acyl-CoA oxidase activity|GO:0003997||ISS product acyl-CoA oxidase 6 note acyl-CoA oxidase 6 (ACX6); FUNCTIONS IN: acyl-CoA dehydrogenase activity, oxidoreductase activity, acting on the CH-CH group of donors, oxidoreductase activity, FAD binding, acyl-CoA oxidase activity; INVOLVED IN: oxidation reduction, fatty acid beta-oxidation, fatty acid metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA oxidase/dehydrogenase, central domain (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 3 (TAIR:AT1G06290.1); Has 11223 Blast hits to 11219 proteins in 1363 species: Archae - 224; Bacteria - 7535; Metazoa - 1409; Fungi - 559; Plants - 271; Viruses - 0; Other Eukaryotes - 1225 (source: NCBI BLink). protein_id AT1G06310.1p transcript_id AT1G06310.1 protein_id AT1G06310.1p transcript_id AT1G06310.1
At1g06320	chr1:001930602	0.0	W/1930602-1930700,1930791-1930835,1931006-1931449	AT1G06320.1 CDS hypothetical protein [TAIR10] CDS gene_syn T2D23.15, T2D23_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G06320.1p transcript_id AT1G06320.1 protein_id AT1G06320.1p transcript_id AT1G06320.1
At1g06330	chr1:001931671	0.0	C/1931671-1932041,1932158-1932233,1932348-1932353	AT1G06330.1 CDS Heavy metal transport/detoxification superfamily protein [TAIR10] CDS gene_syn T2D23.3, T2D23_3 go_process metal ion transport|GO:0030001||IEA go_function metal ion binding|GO:0046872||IEA go_component cellular_component|GO:0005575||ND go_process copper ion transport|GO:0006825||ISS go_function copper ion binding|GO:0005507||ISS product Heavy metal transport/detoxification superfamily protein note Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G18196.1); Has 1362 Blast hits to 1319 proteins in 117 species: Archae - 0; Bacteria - 114; Metazoa - 22; Fungi - 14; Plants - 1212; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06330.1p transcript_id AT1G06330.1 protein_id AT1G06330.1p transcript_id AT1G06330.1
At1g06340	chr1:001933583	0.0	C/1933583-1933987	AT1G06340.1 CDS Plant Tudor-like protein [TAIR10] CDS gene_syn T2D23.4, T2D23_4 go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Plant Tudor-like protein note Plant Tudor-like protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 263 Blast hits to 216 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G06340.1p transcript_id AT1G06340.1 protein_id AT1G06340.1p transcript_id AT1G06340.1
At1g06350	chr1:001935510	0.0	C/1935510-1935708,1935799-1935905,1936004-1936144,1936228-1936368,1936475-1936789	AT1G06350.1 CDS Fatty acid desaturase family protein [TAIR10] CDS gene_syn T2D23.5, T2D23_5 go_process lipid metabolic process|GO:0006629||IEA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water|GO:0016717||IEA go_function oxidoreductase activity|GO:0016491||ISS product Fatty acid desaturase family protein note Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06360.1); Has 3426 Blast hits to 3426 proteins in 822 species: Archae - 0; Bacteria - 1532; Metazoa - 799; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 751 (source: NCBI BLink). protein_id AT1G06350.1p transcript_id AT1G06350.1 protein_id AT1G06350.1p transcript_id AT1G06350.1
At1g06360	chr1:001939173	0.0	C/1939173-1939371,1939464-1939570,1939658-1939798,1939874-1940014,1940106-1940417	AT1G06360.1 CDS Fatty acid desaturase family protein [TAIR10] CDS gene_syn T2D23.6, T2D23_6 go_process lipid metabolic process|GO:0006629||IEA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water|GO:0016717||IEA go_function oxidoreductase activity|GO:0016491||ISS product Fatty acid desaturase family protein note Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06350.1); Has 3432 Blast hits to 3432 proteins in 822 species: Archae - 0; Bacteria - 1534; Metazoa - 802; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 752 (source: NCBI BLink). protein_id AT1G06360.1p transcript_id AT1G06360.1 protein_id AT1G06360.1p transcript_id AT1G06360.1
AT1G06360	chr1:001939173	0.0	C/1939173-1939371,1939464-1939570,1939658-1939798,1939874-1940014,1940106-1940465	AT1G06360.2 AT1G06360.2 CDS Fatty acid desaturase family protein
At1g06370	chr1:001942843	0.0	C/1942843-1943114,1943196-1943343,1943444-1943653,1943754-1943797,1943894-1944023,1944162-1944371,1944445-1944546,1944650-1944934	AT1G06370.1 [TAIR10] pseudogene
At1g06380	chr1:001945124	0.0	W/1945124-1945888	AT1G06380.1 CDS Ribosomal protein L1p/L10e family [TAIR10] CDS gene_syn T2D23.8, T2D23_8 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA product Ribosomal protein L1p/L10e family note Ribosomal protein L1p/L10e family; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42650.1); Has 1018 Blast hits to 1018 proteins in 280 species: Archae - 3; Bacteria - 0; Metazoa - 406; Fungi - 260; Plants - 220; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). protein_id AT1G06380.1p transcript_id AT1G06380.1 protein_id AT1G06380.1p transcript_id AT1G06380.1
At1g06390	chr1:001946860	0.0	W/1946860-1946964,1948123-1948215,1948429-1948488,1948574-1948846,1948936-1949010,1949085-1949141,1949315-1949455,1949567-1949617,1949725-1949820,1949938-1950021,1950149-1950250,1950331-1950417	AT1G06390.1 CDS GSK3/SHAGGY-like protein kinase 1 [TAIR10] CDS gene_syn A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, ATGSK1, ATSK2-3, ATSK22, BIL2, BIN2-LIKE 2, GSK1, GSK3/SHAGGY-LIKE PROTEIN KINASE, GSK3/SHAGGY-like protein kinase 1, SHAGGY-LIKE PROTEIN KINASE 22, SK22, T2D23.9, T2D23_9 gene GSK1 function encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosol|GO:0005829|18433157|IDA go_process protein amino acid phosphorylation|GO:0006468|17873094|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|17873094|IPI go_process regulation of protein localization|GO:0032880|17873094|IDA go_process hyperosmotic salinity response|GO:0042538|11532176|IMP go_function glycogen synthase kinase 3 activity|GO:0004696|10198112|ISS go_function kinase activity|GO:0016301||ISS product GSK3/SHAGGY-like protein kinase 1 note GSK3/SHAGGY-like protein kinase 1 (GSK1); FUNCTIONS IN: kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: brassinosteroid mediated signaling pathway, protein amino acid phosphorylation, hyperosmotic salinity response, regulation of protein localization; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SHAGGY-related protein kinase dZeta (TAIR:AT2G30980.1); Has 107835 Blast hits to 106562 proteins in 3623 species: Archae - 81; Bacteria - 10704; Metazoa - 38361; Fungi - 11903; Plants - 28114; Viruses - 380; Other Eukaryotes - 18292 (source: NCBI BLink). protein_id AT1G06390.1p transcript_id AT1G06390.1 protein_id AT1G06390.1p transcript_id AT1G06390.1
At1g06390	chr1:001946860	0.0	W/1946860-1946964,1948123-1948215,1948429-1948488,1948574-1948846,1948936-1949010,1949085-1949141,1949315-1949455,1949567-1949617,1949725-1949820,1949938-1950021,1950149-1950250,1950331-1950417	AT1G06390.2 CDS GSK3/SHAGGY-like protein kinase 1 [TAIR10] CDS gene_syn A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, ATGSK1, ATSK2-3, ATSK22, BIL2, BIN2-LIKE 2, GSK1, GSK3/SHAGGY-LIKE PROTEIN KINASE, GSK3/SHAGGY-like protein kinase 1, SHAGGY-LIKE PROTEIN KINASE 22, SK22, T2D23.9, T2D23_9 gene GSK1 function encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosol|GO:0005829|18433157|IDA go_process protein amino acid phosphorylation|GO:0006468|17873094|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|17873094|IPI go_process regulation of protein localization|GO:0032880|17873094|IDA go_process hyperosmotic salinity response|GO:0042538|11532176|IMP go_function glycogen synthase kinase 3 activity|GO:0004696|10198112|ISS go_function kinase activity|GO:0016301||ISS product GSK3/SHAGGY-like protein kinase 1 note GSK3/SHAGGY-like protein kinase 1 (GSK1); FUNCTIONS IN: kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: brassinosteroid mediated signaling pathway, protein amino acid phosphorylation, hyperosmotic salinity response, regulation of protein localization; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SHAGGY-related protein kinase dZeta (TAIR:AT2G30980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06390.2p transcript_id AT1G06390.2 protein_id AT1G06390.2p transcript_id AT1G06390.2
At1g06400	chr1:001951089	0.0	C/1951089-1951518,1952466-1952686	AT1G06400.1 CDS Ras-related small GTP-binding family protein [TAIR10] CDS gene_syn ARA-2, ARA2, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, ATRAB11E, ATRABA1A, SMALL GTP-BINDING PROTEIN, T2D23.10, T2D23_10 gene ARA-2 function small GTP-binding protein (ara-2) go_component plasma membrane|GO:0005886|17317660|IDA go_process small GTPase mediated signal transduction|GO:0007264||IEA go_process protein transport|GO:0015031||IEA go_function GTP binding|GO:0005525|1748311|ISS go_function GTP binding|GO:0005525||ISS product Ras-related small GTP-binding family protein note ARA-2; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1C (TAIR:AT5G45750.1); Has 26542 Blast hits to 26487 proteins in 734 species: Archae - 28; Bacteria - 140; Metazoa - 13950; Fungi - 3642; Plants - 2996; Viruses - 20; Other Eukaryotes - 5766 (source: NCBI BLink). protein_id AT1G06400.1p transcript_id AT1G06400.1 protein_id AT1G06400.1p transcript_id AT1G06400.1
At1g06410	chr1:001955413	0.0	W/1955413-1957382,1957477-1957750,1957842-1958153	AT1G06410.1 CDS trehalose-phosphatase/synthase 7 [TAIR10] CDS gene_syn ATTPS7, ATTPSA, T2D23.11, T2D23_11, TPS7, TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 gene TPS7 function Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. go_process trehalose biosynthetic process|GO:0005992||IEA go_process metabolic process|GO:0008152||IEA go_process trehalose biosynthetic process|GO:0005992||ISS go_function trehalose-phosphatase activity|GO:0004805||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product trehalose-phosphatase/synthase 7 note trehalose-phosphatase/synthase 7 (TPS7); FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose phosphatase/synthase 5 (TAIR:AT4G17770.1); Has 4234 Blast hits to 4163 proteins in 1008 species: Archae - 52; Bacteria - 2285; Metazoa - 161; Fungi - 658; Plants - 607; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink). protein_id AT1G06410.1p transcript_id AT1G06410.1 protein_id AT1G06410.1p transcript_id AT1G06410.1
AT1G06410	chr1:001955413	0.0	W/1955413-1957382,1957477-1957750,1957842-1958153	AT1G06410.2 AT1G06410.2 CDS trehalose-phosphatase/synthase 7
AT1G06410	chr1:001955413	0.0	W/1955413-1957382,1957477-1957750,1957842-1958153	AT1G06410.3 AT1G06410.3 CDS trehalose-phosphatase/synthase 7
At1g06420	chr1:001958987	0.0	W/1958987-1959032,1959102-1959652	AT1G06420.2 CDS DNA ligase-like protein, putative [TAIR10] CDS gene_syn T2D23.12, T2D23_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages. protein_id AT1G06420.2p transcript_id AT1G06420.2 protein_id AT1G06420.2p transcript_id AT1G06420.2
At1g06420	chr1:001958987	0.0	W/1958987-1959652	AT1G06420.1 CDS DNA ligase-like protein, putative [TAIR10] CDS gene_syn T2D23.12, T2D23_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 1017 Blast hits to 654 proteins in 124 species: Archae - 0; Bacteria - 39; Metazoa - 232; Fungi - 69; Plants - 40; Viruses - 0; Other Eukaryotes - 637 (source: NCBI BLink). protein_id AT1G06420.1p transcript_id AT1G06420.1 protein_id AT1G06420.1p transcript_id AT1G06420.1
At1g06430	chr1:001960214	0.0	C/1960214-1960564,1960655-1960895,1960970-1961283,1961374-1962525	AT1G06430.1 CDS FTSH protease 8 [TAIR10] CDS gene_syn FTSH protease 8, FTSH8 gene FTSH8 function encodes a FtsH protease that is localized to the chloroplast go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component thylakoid|GO:0009579|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_component chloroplast|GO:0009507|14630971|IDA go_process PSII associated light-harvesting complex II catabolic process|GO:0010304|16157880|TAS go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS go_function metallopeptidase activity|GO:0008237||ISS go_function zinc ion binding|GO:0008270||ISS go_function ATPase activity|GO:0016887||ISS product FTSH protease 8 note FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). protein_id AT1G06430.1p transcript_id AT1G06430.1 protein_id AT1G06430.1p transcript_id AT1G06430.1
AT1G06430	chr1:001960214	0.0	C/1960214-1960564,1960655-1960895,1960970-1961283,1961374-1962525	AT1G06430.2 AT1G06430.2 CDS FTSH protease 8
AT1G06430	chr1:001960214	0.0	C/1960214-1960564,1960655-1960895,1960970-1961283,1961374-1962525	AT1G06430.3 AT1G06430.3 CDS FTSH protease 8
At1g06440	chr1:001963733	0.0	C/1963733-1964905	AT1G06440.1 CDS Ubiquitin carboxyl-terminal hydrolase family protein [TAIR10] CDS gene_syn F12K11.21, F12K11_21 go_component mitochondrion|GO:0005739||IEA product Ubiquitin carboxyl-terminal hydrolase family protein note Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, root; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G33495.1); Has 412 Blast hits to 405 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 411; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G06440.1p transcript_id AT1G06440.1 protein_id AT1G06440.1p transcript_id AT1G06440.1
At1g06450	chr1:001965924	0.0	W/1965924-1967006	AT1G06450.1 CDS Polynucleotidyl transferase, ribonuclease H-like superfamily protein [TAIR10] CDS gene_syn F12K11.20, F12K11_20 go_component nucleus|GO:0005634||IEA go_function nucleic acid binding|GO:0003676||IEA go_process RNA modification|GO:0009451||ISS go_function ribonuclease activity|GO:0004540||ISS product Polynucleotidyl transferase, ribonuclease H-like superfamily protein note Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G44240.1); Has 884 Blast hits to 883 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 148; Plants - 363; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). protein_id AT1G06450.1p transcript_id AT1G06450.1 protein_id AT1G06450.1p transcript_id AT1G06450.1
At1g06460	chr1:001967308	0.0	C/1967308-1967344,1967603-1967767,1967864-1967978,1968226-1968421,1968512-1968628,1968784-1968906,1969310-1969414	AT1G06460.1 CDS alpha-crystallin domain 32.1 [TAIR10] CDS gene_syn ACD31.2, ACD32.1, ALPHA-CRYSTALLIN DOMAIN 31.2, F12K11.19, F12K11_19, alpha-crystallin domain 32.1 gene ACD32.1 function ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins. go_component peroxisome|GO:0005777|17951448|IDA go_process response to heat|GO:0009408||ISS product alpha-crystallin domain 32.1 note alpha-crystallin domain 32.1 (ACD32.1); INVOLVED IN: response to heat; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein 17.6A (TAIR:AT5G12030.1); Has 3590 Blast hits to 3590 proteins in 1004 species: Archae - 36; Bacteria - 2284; Metazoa - 1; Fungi - 156; Plants - 751; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink). protein_id AT1G06460.1p transcript_id AT1G06460.1 protein_id AT1G06460.1p transcript_id AT1G06460.1
At1g06470	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.1 CDS Nucleotide/sugar transporter family protein [TAIR10] CDS gene_syn F12K11.18, F12K11_18 go_component membrane|GO:0016020|11152613|ISS product Nucleotide/sugar transporter family protein note Nucleotide/sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G25400.1); Has 2283 Blast hits to 2278 proteins in 296 species: Archae - 6; Bacteria - 116; Metazoa - 574; Fungi - 390; Plants - 969; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink). protein_id AT1G06470.1p transcript_id AT1G06470.1 protein_id AT1G06470.1p transcript_id AT1G06470.1
At1g06470	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.2 CDS Nucleotide/sugar transporter family protein [TAIR10] CDS gene_syn F12K11.18, F12K11_18 go_component membrane|GO:0016020|11152613|ISS product Nucleotide/sugar transporter family protein note Nucleotide/sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G25400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06470.2p transcript_id AT1G06470.2 protein_id AT1G06470.2p transcript_id AT1G06470.2
AT1G06470	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.3 AT1G06470.3 CDS Nucleotide/sugar transporter family protein
AT1G06470	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.4 AT1G06470.4 CDS Nucleotide/sugar transporter family protein
At1g06475	chr1:001973992	0.0	C/1973992-1974273	AT1G06475.1 CDS transmembrane protein, putative [TAIR10] CDS go_component membrane|GO:0016020|11152613|ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06475.1p transcript_id AT1G06475.1 protein_id AT1G06475.1p transcript_id AT1G06475.1
At1g06480	chr1:001978084	0.0	W/1978084-1978157	AT1G06480.1 [TAIR10] tRNA gene_syn 51438.TRNA-ILE-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ile (anticodon: AAT) transcript_id AT1G06480.1
At1g06490	chr1:001978762	0.0	W/1978762-1978996,1979085-1979185,1979322-1979434,1979531-1979618,1979708-1979818,1979898-1980050,1980146-1980235,1980312-1980403,1980528-1980651,1980812-1980946,1981033-1981109,1981190-1981280,1981454-1981576,1981659-1981776,1981858-1982242,1982478-1982538,1982763-1982844,1982926-1982975,1983046-1983132,1983257-1983361,1983454-1983548,1983648-1983729,1983814-1983977,1984079-1984202,1984307-1984407,1984559-1984670,1984750-1984901,1985074-1985183,1985260-1985379,1985459-1985527,1985689-1985878,1985959-1986070,1986231-1986353,1986428-1986546,1986644-1986727,1986914-1987026,1987105-1987334,1987436-1988233,1988320-1988370,1988525-1988710,1988801-1989045,1989220-1989295	AT1G06490.1 CDS glucan synthase-like 7 [TAIR10] CDS gene_syn ATGSL07, F12K11.17, F12K11_17, GSL07, atgsl7, glucan synthase-like 7, gsl07 gene GSL07 function encodes a gene similar to callose synthase go_component 1,3-beta-glucan synthase complex|GO:0000148||IEA go_component membrane|GO:0016020||IEA go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product glucan synthase-like 7 note glucan synthase-like 7 (GSL07); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: glucan synthase-like 11 (TAIR:AT3G59100.1); Has 1279 Blast hits to 924 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 711; Plants - 489; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT1G06490.1p transcript_id AT1G06490.1 protein_id AT1G06490.1p transcript_id AT1G06490.1
AT1G06490	chr1:001978762	0.0	W/1978762-1978996,1979085-1979185,1979322-1979434,1979531-1979618,1979708-1979818,1979898-1980050,1980146-1980235,1980312-1980403,1980528-1980651,1980812-1980946,1981033-1981109,1981190-1981280,1981454-1981576,1981659-1981776,1981858-1982242,1982478-1982538,1982763-1982844,1982926-1982975,1983046-1983132,1983257-1983361,1983454-1983548,1983648-1983729,1983814-1983977,1984079-1984202,1984307-1984407,1984559-1984670,1984750-1984901,1985074-1985183,1985260-1985379,1985459-1985527,1985689-1985878,1985959-1986070,1986231-1986353,1986428-1986546,1986644-1986727,1986914-1987026,1987105-1987334,1987436-1988233,1988320-1988370,1988525-1988710,1988801-1989046	AT1G06490.2 AT1G06490.2 CDS glucan synthase-like 7
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.1 CDS hypothetical protein [TAIR10] CDS gene_syn F12K11.25, F12K11_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06500.1p transcript_id AT1G06500.1 protein_id AT1G06500.1p transcript_id AT1G06500.1
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.2 CDS hypothetical protein [TAIR10] CDS gene_syn F12K11.25, F12K11_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06500.2p transcript_id AT1G06500.2 protein_id AT1G06500.2p transcript_id AT1G06500.2
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.3 CDS hypothetical protein [TAIR10] CDS gene_syn F12K11.25, F12K11_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06500.3p transcript_id AT1G06500.3 protein_id AT1G06500.3p transcript_id AT1G06500.3
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.4 CDS hypothetical protein [TAIR10] CDS gene_syn F12K11.25, F12K11_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06500.4p transcript_id AT1G06500.4 protein_id AT1G06500.4p transcript_id AT1G06500.4
At1g06515	chr1:001990951	0.0	C/1990951-1990963,1991443-1991515,1991884-1991968	AT1G06515.1 CDS transmembrane protein, putative (DUF3317) [TAIR10] CDS go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF3317) note Protein of unknown function (DUF3317); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3317) (TAIR:AT2G30942.1); Has 64 Blast hits to 64 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06515.1p transcript_id AT1G06515.1 protein_id AT1G06515.1p transcript_id AT1G06515.1
At1g06515	chr1:001990951	0.0	C/1990951-1990963,1991443-1991515,1991884-1991968	AT1G06515.2 CDS transmembrane protein, putative (DUF3317) [TAIR10] CDS go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF3317) note Protein of unknown function (DUF3317); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3317) (TAIR:AT2G30942.1). protein_id AT1G06515.2p transcript_id AT1G06515.2 protein_id AT1G06515.2p transcript_id AT1G06515.2
At1g06510	chr1:001992389	0.0	W/1992389-1992545,1992707-1992906,1993024-1993460,1993544-1993583	AT1G06510.1 CDS forkhead-associated domain protein, putative [TAIR10] CDS gene_syn F12K11.16, F12K11_16 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). protein_id AT1G06510.1p transcript_id AT1G06510.1 protein_id AT1G06510.1p transcript_id AT1G06510.1
AT1G06510	chr1:001992389	0.0	W/1992389-1992545,1992707-1992906,1993024-1993460,1993544-1993583	AT1G06510.2 AT1G06510.2 CDS forkhead-associated domain protein, putative
AT1G06510	chr1:001992389	0.0	W/1992389-1992545,1992707-1992906,1993024-1993460,1993544-1993583	AT1G06510.3 AT1G06510.3 CDS forkhead-associated domain protein, putative
At1g06520	chr1:001994170	0.0	C/1994170-1995039,1995180-1996067	AT1G06520.1 CDS glycerol-3-phosphate acyltransferase 1 [TAIR10] CDS gene_syn ATGPAT1, F12K11.15, F12K11_15, GPAT1, glycerol-3-phosphate acyltransferase 1 gene GPAT1 function Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels. go_component mitochondrion|GO:0005739|12897259|IDA go_component membrane|GO:0016020|12897259|IDA go_process metabolic process|GO:0008152||ISS go_process pollen sperm cell differentiation|GO:0048235|12897259|IMP go_process response to karrikin|GO:0080167|20351290|IEP go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|12897259|IGI go_function acyltransferase activity|GO:0008415||ISS product glycerol-3-phosphate acyltransferase 1 note glycerol-3-phosphate acyltransferase 1 (GPAT1); CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 2 (TAIR:AT1G02390.1); Has 381 Blast hits to 368 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 0; Plants - 362; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G06520.1p transcript_id AT1G06520.1 protein_id AT1G06520.1p transcript_id AT1G06520.1
At1g06530	chr1:002001625	0.0	W/2001625-2002596	AT1G06530.1 CDS Tropomyosin-related [TAIR10] CDS gene_syn F12K11.14, F12K11_14 go_component plasma membrane|GO:0005886|17151019|IDA go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrion|GO:0005739|16618929|IDA go_component plastid|GO:0009536|16618929|IDA product Tropomyosin-related note Tropomyosin-related; LOCATED IN: mitochondrion, plasma membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tropomyosin-related (TAIR:AT3G58840.2); Has 146608 Blast hits to 68961 proteins in 3334 species: Archae - 2609; Bacteria - 25073; Metazoa - 65463; Fungi - 13367; Plants - 8726; Viruses - 553; Other Eukaryotes - 30817 (source: NCBI BLink). protein_id AT1G06530.1p transcript_id AT1G06530.1 protein_id AT1G06530.1p transcript_id AT1G06530.1
At1g06540	chr1:002002908	0.0	C/2002908-2003003,2003112-2003393	AT1G06540.1 CDS hypothetical protein [TAIR10] CDS gene_syn F12K11.13, F12K11_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30930.1); Has 16 Blast hits to 16 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06540.1p transcript_id AT1G06540.1 protein_id AT1G06540.1p transcript_id AT1G06540.1
At1g06550	chr1:002003834	0.0	C/2003834-2003882,2003988-2004097,2004193-2004234,2004350-2004451,2004688-2004786,2004867-2004927,2005049-2005170,2005386-2005471,2005550-2005634,2005724-2005807,2005887-2005960,2006053-2006116,2006196-2006264,2006351-2006434,2006532-2006564	AT1G06550.1 CDS ATP-dependent caseinolytic (Clp) protease/crotonase family protein [TAIR10] CDS gene_syn F12K11.12, F12K11_12 go_function catalytic activity|GO:0003824||IEA go_component cellular_component|GO:0005575||ND go_process fatty acid beta-oxidation|GO:0006635||ISS go_process response to karrikin|GO:0080167|20351290|IEP go_function 3-hydroxyisobutyryl-CoA hydrolase activity|GO:0003860||ISS product ATP-dependent caseinolytic (Clp) protease/crotonase family protein note ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: response to karrikin, fatty acid beta-oxidation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1); Has 26566 Blast hits to 26556 proteins in 2155 species: Archae - 406; Bacteria - 18031; Metazoa - 1157; Fungi - 686; Plants - 463; Viruses - 0; Other Eukaryotes - 5823 (source: NCBI BLink). protein_id AT1G06550.1p transcript_id AT1G06550.1 protein_id AT1G06550.1p transcript_id AT1G06550.1
At1g06560	chr1:002007660	0.0	W/2007660-2007898,2008186-2008474,2008723-2008870,2009261-2009398,2009497-2009559,2009726-2009847,2010017-2010248,2010559-2010770,2011087-2011187,2011354-2011435,2011539-2011600,2011713-2011824	AT1G06560.1 CDS NOL1/NOP2/sun family protein [TAIR10] CDS gene_syn F12K11.10, F12K11_10 go_function RNA binding|GO:0003723||IEA go_function methyltransferase activity|GO:0008168||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product NOL1/NOP2/sun family protein note NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink). protein_id AT1G06560.1p transcript_id AT1G06560.1 protein_id AT1G06560.1p transcript_id AT1G06560.1
At1g06570	chr1:002012018	0.0	C/2012018-2012189,2012297-2013459	AT1G06570.1 CDS 4-hydroxyphenylpyruvate dioxygenase [TAIR10] CDS gene_syn 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE, F12K11.9, F12K11_9, HPD, P-HYDROXYPHENYLPYRUVATE DIOXYGENASE, PDS1, phytoene desaturation 1 gene PDS1 function Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. go_component mitochondrion|GO:0005739|14671022|IDA go_component cytosol|GO:0005829|10198110|IDA go_component chloroplast|GO:0009507|8718624|NAS go_process vitamin E biosynthetic process|GO:0010189|8718624|IMP go_process plastoquinone biosynthetic process|GO:0010236|8718624|IMP go_process carotenoid biosynthetic process|GO:0016117|8718624|IMP go_function 4-hydroxyphenylpyruvate dioxygenase activity|GO:0003868|9701587|IDA product phytoene desaturation 1 note phytoene desaturation 1 (PDS1); CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 2414 Blast hits to 2412 proteins in 817 species: Archae - 3; Bacteria - 1671; Metazoa - 206; Fungi - 158; Plants - 88; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink). protein_id AT1G06570.1p transcript_id AT1G06570.1 protein_id AT1G06570.1p transcript_id AT1G06570.1
At1g06570	chr1:002012173	0.0	C/2012173-2012189,2012304-2013543	AT1G06570.2 CDS 4-hydroxyphenylpyruvate dioxygenase [TAIR10] CDS gene_syn 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE, F12K11.9, F12K11_9, HPD, P-HYDROXYPHENYLPYRUVATE DIOXYGENASE, PDS1, phytoene desaturation 1 gene PDS1 function Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. go_component mitochondrion|GO:0005739|14671022|IDA go_component cytosol|GO:0005829|10198110|IDA go_component chloroplast|GO:0009507|8718624|NAS go_process vitamin E biosynthetic process|GO:0010189|8718624|IMP go_process plastoquinone biosynthetic process|GO:0010236|8718624|IMP go_process carotenoid biosynthetic process|GO:0016117|8718624|IMP go_function 4-hydroxyphenylpyruvate dioxygenase activity|GO:0003868|9701587|IDA product phytoene desaturation 1 note phytoene desaturation 1 (PDS1); CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 2393 Blast hits to 2392 proteins in 824 species: Archae - 3; Bacteria - 1672; Metazoa - 205; Fungi - 157; Plants - 91; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink). protein_id AT1G06570.2p transcript_id AT1G06570.2 protein_id AT1G06570.2p transcript_id AT1G06570.2
AT1G06580	chr1:002014440	0.0	C/2014440-2015624	AT1G06580.2 AT1G06580.2 CDS Pentatricopeptide repeat (PPR) superfamily protein
AT1G06580	chr1:002014440	0.0	C/2014440-2015624	AT1G06580.3 AT1G06580.3 CDS Pentatricopeptide repeat (PPR) superfamily protein
At1g06580	chr1:002014440	0.0	C/2014440-2015942	AT1G06580.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F12K11.8, F12K11_8 go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G64580.1); Has 57463 Blast hits to 14556 proteins in 285 species: Archae - 4; Bacteria - 52; Metazoa - 759; Fungi - 693; Plants - 54152; Viruses - 0; Other Eukaryotes - 1803 (source: NCBI BLink). protein_id AT1G06580.1p transcript_id AT1G06580.1 protein_id AT1G06580.1p transcript_id AT1G06580.1
At1g06590	chr1:002016504	0.0	C/2016504-2016656,2016929-2016996,2017124-2017388,2017690-2017788,2017911-2018052,2018241-2018346,2018652-2018719,2018871-2018930,2019683-2019945,2020029-2020106,2020749-2020997,2021373-2021405,2021777-2021906,2022094-2022179,2022278-2022362,2022453-2022630,2023050-2023284,2023656-2023777,2023863-2024022,2024335-2024505	AT1G06590.1 CDS anaphase-promoting complex subunit [TAIR10] CDS gene_syn F12K11.7, F12K11_7 go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; Has 380 Blast hits to 268 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 73; Plants - 49; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). protein_id AT1G06590.1p transcript_id AT1G06590.1 protein_id AT1G06590.1p transcript_id AT1G06590.1
At1g06610	chr1:002025356	0.0	W/2025356-2025428	AT1G06610.1 [TAIR10] tRNA gene_syn 51438.TRNA-ALA-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ala (anticodon: AGC) transcript_id AT1G06610.1
At1g06620	chr1:002025618	0.0	W/2025618-2026141,2026434-2026755,2026843-2027094	AT1G06620.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F12K11.24, F12K11_24 function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G61400.1); Has 8339 Blast hits to 8299 proteins in 1003 species: Archae - 0; Bacteria - 1128; Metazoa - 122; Fungi - 867; Plants - 4923; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink). protein_id AT1G06620.1p transcript_id AT1G06620.1 protein_id AT1G06620.1p transcript_id AT1G06620.1
AT1G06620	chr1:002025618	0.0	W/2025618-2026141,2026434-2026764	AT1G06620.2 AT1G06620.2 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
AT1G06630	chr1:002028044	0.0	W/2028044-2028976,2029050-2029199,2029287-2029442	AT1G06630.9 AT1G06630.9 CDS F-box/RNI-like superfamily protein
At1g06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029376,2030003-2030207,2031091-2031173	AT1G06630.1 CDS F-box/RNI-like superfamily protein [TAIR10] CDS gene_syn F12K11.23, F12K11_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like superfamily protein note F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G06630.1p transcript_id AT1G06630.1 protein_id AT1G06630.1p transcript_id AT1G06630.1
At1g06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.2 CDS F-box/RNI-like superfamily protein [TAIR10] CDS gene_syn F12K11.23, F12K11_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like superfamily protein note F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1816 Blast hits to 1777 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1813; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G06630.2p transcript_id AT1G06630.2 protein_id AT1G06630.2p transcript_id AT1G06630.2
At1g06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.3 CDS F-box/RNI-like superfamily protein [TAIR10] CDS gene_syn F12K11.23, F12K11_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like superfamily protein note F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1830 Blast hits to 1791 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1827; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G06630.3p transcript_id AT1G06630.3 protein_id AT1G06630.3p transcript_id AT1G06630.3
AT1G06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.4 AT1G06630.4 CDS F-box/RNI-like superfamily protein
AT1G06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.6 AT1G06630.6 CDS F-box/RNI-like superfamily protein
AT1G06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029214	AT1G06630.5 AT1G06630.5 CDS F-box/RNI-like superfamily protein
AT1G06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029214	AT1G06630.8 AT1G06630.8 CDS F-box/RNI-like superfamily protein
AT1G06630	chr1:002028071	0.0	W/2028071-2028985	AT1G06630.7 AT1G06630.7 CDS F-box/RNI-like superfamily protein
At1g06640	chr1:002032366	0.0	W/2032366-2032898,2033070-2033385,2033516-2033527	AT1G06640.3 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F12K11.27, F12K11_27 function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06650.2); Has 6708 Blast hits to 6677 proteins in 886 species: Archae - 0; Bacteria - 901; Metazoa - 66; Fungi - 436; Plants - 4637; Viruses - 0; Other Eukaryotes - 668 (source: NCBI BLink). protein_id AT1G06640.3p transcript_id AT1G06640.3 protein_id AT1G06640.3p transcript_id AT1G06640.3
At1g06640	chr1:002032366	0.0	W/2032366-2032898,2033070-2033391,2033521-2033775	AT1G06640.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F12K11.27, F12K11_27 function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06650.2); Has 8123 Blast hits to 8085 proteins in 990 species: Archae - 0; Bacteria - 1087; Metazoa - 116; Fungi - 743; Plants - 4881; Viruses - 0; Other Eukaryotes - 1296 (source: NCBI BLink). protein_id AT1G06640.1p transcript_id AT1G06640.1 protein_id AT1G06640.1p transcript_id AT1G06640.1
At1g06640	chr1:002032366	0.0	W/2032366-2032898,2033070-2033505	AT1G06640.2 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F12K11.27, F12K11_27 function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06640.2p transcript_id AT1G06640.2 protein_id AT1G06640.2p transcript_id AT1G06640.2
At1g06645	chr1:002034190	0.0	W/2034190-2034752,2034824-2035145,2035245-2035499	AT1G06645.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F12K11.6 go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06650.2); Has 8054 Blast hits to 8023 proteins in 983 species: Archae - 0; Bacteria - 1064; Metazoa - 113; Fungi - 730; Plants - 4890; Viruses - 0; Other Eukaryotes - 1257 (source: NCBI BLink). protein_id AT1G06645.1p transcript_id AT1G06645.1 protein_id AT1G06645.1p transcript_id AT1G06645.1
At1g06650	chr1:002035909	0.0	W/2035909-2036441,2036520-2036841,2036932-2037186	AT1G06650.2 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F12K11.26, F12K11_26 function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06640.1); Has 8180 Blast hits to 8149 proteins in 985 species: Archae - 0; Bacteria - 1067; Metazoa - 118; Fungi - 802; Plants - 4889; Viruses - 0; Other Eukaryotes - 1304 (source: NCBI BLink). protein_id AT1G06650.2p transcript_id AT1G06650.2 protein_id AT1G06650.2p transcript_id AT1G06650.2
At1g06650	chr1:002035909	0.0	W/2035909-2036441,2036520-2036841,2036958-2037047	AT1G06650.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F12K11.26, F12K11_26 function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06640.1); Has 7290 Blast hits to 7263 proteins in 928 species: Archae - 0; Bacteria - 977; Metazoa - 84; Fungi - 531; Plants - 4672; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink). protein_id AT1G06650.1p transcript_id AT1G06650.1 protein_id AT1G06650.1p transcript_id AT1G06650.1
At1g06660	chr1:002037461	0.0	C/2037461-2037554,2037639-2037730,2037809-2038544,2038723-2038943,2039500-2039582,2039687-2039735,2039978-2040148	AT1G06660.1 CDS aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit, putative [TAIR10] CDS gene_syn F12K11.5, F12K11_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G06660.1p transcript_id AT1G06660.1 protein_id AT1G06660.1p transcript_id AT1G06660.1
AT1G06670	chr1:002040567	0.0	W/2040567-2040669,2040881-2040971,2041075-2041507,2041630-2041704,2041838-2041882,2042220-2042313,2042424-2042482,2042581-2042706,2042962-2043014,2043280-2043313,2043396-2043485,2043590-2044576,2044707-2045786,2045873-2046391,2046476-2047333	AT1G06670.2 AT1G06670.2 CDS nuclear DEIH-boxhelicase
At1g06670	chr1:002040567	0.0	W/2040567-2040669,2040881-2040971,2041075-2041507,2041630-2041704,2041838-2041882,2042220-2042313,2042424-2042482,2042581-2042706,2042962-2043014,2043280-2043313,2043396-2043485,2043590-2044576,2044707-2045786,2045873-2047333	AT1G06670.1 CDS nuclear DEIH-boxhelicase [TAIR10] CDS gene_syn DEIH-BOX RNA/DNA HELICASE, F12K11.4, F12K11_4, NIH, nuclear DEIH-boxhelicase gene NIH function nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins go_component nucleus|GO:0005634|10471743|IDA go_process DNA metabolic process|GO:0006259|10471743|ISS go_function DNA binding|GO:0003677|10471743|IDA go_function DNA helicase activity|GO:0003678|10471743|ISS product nuclear DEIH-boxhelicase note nuclear DEIH-boxhelicase (NIH); CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Ankyrin repeat-containing domain (InterPro:IPR020683), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase in vascular tissue and tapetum (TAIR:AT2G30800.1); Has 26020 Blast hits to 16191 proteins in 1841 species: Archae - 22; Bacteria - 7563; Metazoa - 5966; Fungi - 2932; Plants - 1417; Viruses - 339; Other Eukaryotes - 7781 (source: NCBI BLink). protein_id AT1G06670.1p transcript_id AT1G06670.1 protein_id AT1G06670.1p transcript_id AT1G06670.1
At1g06680	chr1:002047940	0.0	W/2047940-2048186,2048297-2048529,2048620-2048670,2048926-2049186	AT1G06680.1 CDS photosystem II subunit P-1 [TAIR10] CDS gene_syn F12K11.3, F12K11_3, OE23, OEE2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, OXYGEN-EVOLVING ENHANCER PROTEIN 2, PHOTOSYSTEM II SUBUNIT P, PSBP-1, PSII-P, photosystem II subunit P-1 gene PSBP-1 function Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component thylakoid|GO:0009579|14729914|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component thylakoid|GO:0009579|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component thylakoid lumen|GO:0031977|11719511|IDA go_component apoplast|GO:0048046|18538804|IDA go_process defense response to bacterium|GO:0042742|17028151|IEP go_component chloroplast thylakoid|GO:0009534|11526245|IDA go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA go_component chloroplast thylakoid lumen|GO:0009543||ISS go_component oxygen evolving complex|GO:0009654||ISS go_component extrinsic to membrane|GO:0019898|11719511|TAS go_component chloroplast photosystem II|GO:0030095||ISS go_process response to light intensity|GO:0009642|16282331|IEP go_process photosynthesis, light reaction|GO:0019684|9039496|TAS go_function poly(U) RNA binding|GO:0008266|17511964|IDA product photosystem II subunit P-1 note photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 12 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 287 Blast hits to 286 proteins in 81 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G06680.1p transcript_id AT1G06680.1 protein_id AT1G06680.1p transcript_id AT1G06680.1
At1g06680	chr1:002048076	0.0	W/2048076-2048190,2048297-2048529,2048620-2048670,2048926-2049186	AT1G06680.2 CDS photosystem II subunit P-1 [TAIR10] CDS gene_syn F12K11.3, F12K11_3, OE23, OEE2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, OXYGEN-EVOLVING ENHANCER PROTEIN 2, PHOTOSYSTEM II SUBUNIT P, PSBP-1, PSII-P, photosystem II subunit P-1 gene PSBP-1 function Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. go_component chloroplast|GO:0009507|18431481|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component apoplast|GO:0048046|18538804|IDA go_process defense response to bacterium|GO:0042742|17028151|IEP go_component chloroplast thylakoid|GO:0009534|11526245|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA go_component chloroplast thylakoid lumen|GO:0009543||ISS go_component oxygen evolving complex|GO:0009654||ISS go_component extrinsic to membrane|GO:0019898|11719511|TAS go_component chloroplast photosystem II|GO:0030095||ISS go_process response to light intensity|GO:0009642|16282331|IEP go_process photosynthesis, light reaction|GO:0019684|9039496|TAS go_function poly(U) RNA binding|GO:0008266|17511964|IDA product photosystem II subunit P-1 note photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G06680.2p transcript_id AT1G06680.2 protein_id AT1G06680.2p transcript_id AT1G06680.2
At1g06690	chr1:002049742	0.0	C/2049742-2049927,2050096-2050158,2050474-2050556,2050703-2050870,2050960-2051031,2051132-2051154,2051232-2051396,2051484-2051524,2051602-2051693,2051799-2052039	AT1G06690.1 CDS NAD(P)-linked oxidoreductase superfamily protein [TAIR10] CDS gene_syn F12K11.2, F12K11_2 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component plastoglobule|GO:0010287|16414959|IDA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function aldo-keto reductase activity|GO:0004033||ISS product NAD(P)-linked oxidoreductase superfamily protein note NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT5G53580.1); Has 30017 Blast hits to 30001 proteins in 2563 species: Archae - 570; Bacteria - 19734; Metazoa - 1881; Fungi - 2197; Plants - 1331; Viruses - 0; Other Eukaryotes - 4304 (source: NCBI BLink). protein_id AT1G06690.1p transcript_id AT1G06690.1 protein_id AT1G06690.1p transcript_id AT1G06690.1
At1g06700	chr1:002052750	0.0	C/2052750-2052875,2052986-2053072,2053158-2053290,2053375-2053648,2053786-2053912,2053995-2054248,2054468-2054552	AT1G06700.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F4H5.21, F4H5_21 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein tyrosine kinase activity|GO:0004713||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G30740.1); Has 112305 Blast hits to 111003 proteins in 4429 species: Archae - 103; Bacteria - 13312; Metazoa - 41447; Fungi - 9236; Plants - 31753; Viruses - 344; Other Eukaryotes - 16110 (source: NCBI BLink). protein_id AT1G06700.1p transcript_id AT1G06700.1 protein_id AT1G06700.1p transcript_id AT1G06700.1
At1g06700	chr1:002052750	0.0	C/2052750-2052875,2052986-2053072,2053158-2053290,2053375-2053648,2053786-2053912,2053995-2054248,2054468-2054552	AT1G06700.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F4H5.21, F4H5_21 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein tyrosine kinase activity|GO:0004713||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G30740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06700.2p transcript_id AT1G06700.2 protein_id AT1G06700.2p transcript_id AT1G06700.2
AT1G06700	chr1:002052750	0.0	C/2052750-2052875,2052986-2053072,2053158-2053290,2053375-2053648,2053786-2053912,2053995-2054248,2054468-2054552	AT1G06700.3 AT1G06700.3 CDS Protein kinase superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.12 AT1G06710.12 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.13 AT1G06710.13 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.19 AT1G06710.19 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F4H5.20, F4H5_20 go_component mitochondrion|GO:0005739||IEA product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6; Bacteria - 56; Metazoa - 772; Fungi - 1057; Plants - 62952; Viruses - 0; Other Eukaryotes - 2380 (source: NCBI BLink). protein_id AT1G06710.1p transcript_id AT1G06710.1 protein_id AT1G06710.1p transcript_id AT1G06710.1
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.2 AT1G06710.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.3 AT1G06710.3 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.4 AT1G06710.4 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.5 AT1G06710.5 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.6 AT1G06710.6 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.7 AT1G06710.7 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.8 AT1G06710.8 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.9 AT1G06710.9 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.10 AT1G06710.10 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.11 AT1G06710.11 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.14 AT1G06710.14 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.15 AT1G06710.15 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.16 AT1G06710.16 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.17 AT1G06710.17 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G06710	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.18 AT1G06710.18 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g06720	chr1:002060615	0.0	C/2060615-2060776,2060872-2061075,2061197-2061445,2061528-2061737,2062196-2062435,2062603-2062821,2062892-2062944,2063365-2063671,2063760-2063956,2064119-2064299,2064636-2064925,2065132-2065372,2065833-2066043,2066132-2066322,2066496-2066614,2066733-2066823,2066902-2067048,2067150-2067281	AT1G06720.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F4H5.19, F4H5_19 go_component nucleus|GO:0005634||IEA go_process ribosome biogenesis|GO:0042254||IEA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49; Bacteria - 737; Metazoa - 2493; Fungi - 1253; Plants - 549; Viruses - 77; Other Eukaryotes - 3171 (source: NCBI BLink). protein_id AT1G06720.1p transcript_id AT1G06720.1 protein_id AT1G06720.1p transcript_id AT1G06720.1
AT1G06720	chr1:002060615	0.0	C/2060615-2060776,2060872-2061075,2061197-2061445,2061528-2061737,2062196-2062435,2062603-2062821,2062892-2062985,2063322-2063671,2063760-2063956,2064119-2064299,2064636-2064925,2065132-2065372,2065833-2066043,2066132-2066322,2066496-2066614,2066733-2066823,2066902-2067048,2067150-2067281	AT1G06720.2 AT1G06720.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G06720	chr1:002061837	0.0	C/2061837-2061932,2062196-2062435,2062603-2062821,2062892-2062985,2063322-2063671,2063760-2063956,2064119-2064299,2064636-2064925,2065132-2065372,2065833-2066043,2066132-2066322,2066496-2066614,2066733-2066823,2066902-2067048,2067150-2067281	AT1G06720.3 AT1G06720.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g06730	chr1:002067633	0.0	W/2067633-2068010,2068249-2068496,2068985-2069276,2069358-2069510,2069654-2070049	AT1G06730.1 CDS pfkB-like carbohydrate kinase family protein [TAIR10] CDS gene_syn F4H5.18, F4H5_18 go_process D-ribose catabolic process|GO:0019303||IEA go_component nucleus|GO:0005634|15610358|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_function kinase activity|GO:0016301||ISS product pfkB-like carbohydrate kinase family protein note pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT3G59480.1); Has 14630 Blast hits to 14623 proteins in 2218 species: Archae - 286; Bacteria - 12051; Metazoa - 104; Fungi - 33; Plants - 346; Viruses - 0; Other Eukaryotes - 1810 (source: NCBI BLink). protein_id AT1G06730.1p transcript_id AT1G06730.1 protein_id AT1G06730.1p transcript_id AT1G06730.1
At1g06740	chr1:002071194	0.0	W/2071194-2073374	AT1G06740.1 CDS MuDR family transposase [TAIR10] mRNA
At1g06750	chr1:002073882	0.0	W/2073882-2073891,2073968-2074153,2074247-2074470,2074555-2074616,2074722-2074943,2075058-2075178,2075268-2075590,2075680-2075824,2076084-2076350	AT1G06750.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F4H5.16, F4H5_16 go_process cell killing|GO:0001906||IEA go_function ATP binding|GO:0005524||IEA product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cell killing; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G30630.1); Has 186 Blast hits to 185 proteins in 43 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 3; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G06750.1p transcript_id AT1G06750.1 protein_id AT1G06750.1p transcript_id AT1G06750.1
AT1G06750	chr1:002073882	0.0	W/2073882-2073891,2073968-2074153,2074247-2074470,2074555-2074616,2074722-2074943,2075058-2075178,2075268-2075590,2075680-2075824,2076084-2076350	AT1G06750.3 AT1G06750.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g06750	chr1:002073882	0.0	W/2073882-2073912,2073968-2074153,2074247-2074470,2074555-2074616,2074722-2074943,2075058-2075178,2075268-2075590,2075680-2075824,2076084-2076350	AT1G06750.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F4H5.16, F4H5_16 go_process cell killing|GO:0001906||IEA go_function ATP binding|GO:0005524||IEA product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cell killing; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G30630.1). protein_id AT1G06750.2p transcript_id AT1G06750.2 protein_id AT1G06750.2p transcript_id AT1G06750.2
At1g06760	chr1:002076687	0.0	C/2076687-2077310,2077416-2077616	AT1G06760.1 CDS winged-helix DNA-binding transcription factor family protein [TAIR10] CDS gene_syn F4H5.15, F4H5_15 go_component nucleosome|GO:0000786||IEA go_component nucleus|GO:0005634||IEA go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_component nucleosome|GO:0000786||ISS go_process nucleosome assembly|GO:0006334||ISS go_function DNA binding|GO:0003677||ISS product winged-helix DNA-binding transcription factor family protein note winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 20265 Blast hits to 10904 proteins in 1494 species: Archae - 37; Bacteria - 8386; Metazoa - 4718; Fungi - 1128; Plants - 980; Viruses - 120; Other Eukaryotes - 4896 (source: NCBI BLink). protein_id AT1G06760.1p transcript_id AT1G06760.1 protein_id AT1G06760.1p transcript_id AT1G06760.1
At1g06770	chr1:002079222	0.0	C/2079222-2079401,2079512-2079584,2079717-2079767,2079877-2080307,2080470-2080658	AT1G06770.2 CDS DREB2A-interacting protein 1 [TAIR10] CDS gene_syn DREB2A-interacting protein 1, DRIP1, F4H5.14, F4H5_14 gene DRIP1 function Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. go_component nucleus|GO:0005634|18552202|IDA go_process response to water deprivation|GO:0009414|18552202|IGI go_function ubiquitin-protein ligase activity|GO:0004842|18552202|IDA go_function zinc ion binding|GO:0008270||ISS product DREB2A-interacting protein 1 note DREB2A-interacting protein 1 (DRIP1); BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06770.2p transcript_id AT1G06770.2 protein_id AT1G06770.2p transcript_id AT1G06770.2
At1g06770	chr1:002079222	0.0	C/2079222-2079401,2079512-2079584,2079717-2079767,2079877-2080307,2080470-2080794,2081107-2081206,2081602-2081707	AT1G06770.1 CDS DREB2A-interacting protein 1 [TAIR10] CDS gene_syn DREB2A-interacting protein 1, DRIP1, F4H5.14, F4H5_14 gene DRIP1 function Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. go_component nucleus|GO:0005634|18552202|IDA go_process response to water deprivation|GO:0009414|18552202|IGI go_function ubiquitin-protein ligase activity|GO:0004842|18552202|IDA go_function zinc ion binding|GO:0008270||ISS product DREB2A-interacting protein 1 note DREB2A-interacting protein 1 (DRIP1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1); Has 2055 Blast hits to 2008 proteins in 210 species: Archae - 0; Bacteria - 27; Metazoa - 1318; Fungi - 145; Plants - 309; Viruses - 2; Other Eukaryotes - 254 (source: NCBI BLink). protein_id AT1G06770.1p transcript_id AT1G06770.1 protein_id AT1G06770.1p transcript_id AT1G06770.1
AT1G06770	chr1:002079398	0.0	C/2079398-2079584,2079717-2079767,2079877-2080307,2080470-2080794,2081107-2081206,2081602-2081707	AT1G06770.3 AT1G06770.3 CDS DREB2A-interacting protein 1
At1g06780	chr1:002083689	0.0	W/2083689-2083800,2083991-2084025,2084186-2084227,2084318-2084399,2084487-2084557,2084808-2085079,2085225-2085582,2085716-2086237,2086578-2086853	AT1G06780.1 CDS galacturonosyltransferase 6 [TAIR10] CDS gene_syn F4H5.13, F4H5_13, GAUT6, galacturonosyltransferase 6 gene GAUT6 function Encodes a protein with putative galacturonosyltransferase activity. go_component endomembrane system|GO:0012505||IEA go_process carbohydrate biosynthetic process|GO:0016051||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS product galacturonosyltransferase 6 note galacturonosyltransferase 6 (GAUT6); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: los glycosyltransferase 5 (TAIR:AT2G30575.1); Has 1389 Blast hits to 1379 proteins in 238 species: Archae - 0; Bacteria - 400; Metazoa - 143; Fungi - 0; Plants - 830; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT1G06780.1p transcript_id AT1G06780.1 protein_id AT1G06780.1p transcript_id AT1G06780.1
At1g06780	chr1:002083689	0.0	W/2083689-2083839,2083991-2084025,2084186-2084227,2084318-2084399,2084487-2084557,2084808-2085079,2085225-2085582,2085716-2086237,2086578-2086853	AT1G06780.2 CDS galacturonosyltransferase 6 [TAIR10] CDS gene_syn F4H5.13, F4H5_13, GAUT6, galacturonosyltransferase 6 gene GAUT6 function Encodes a protein with putative galacturonosyltransferase activity. go_component endomembrane system|GO:0012505||IEA go_process carbohydrate biosynthetic process|GO:0016051||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS product galacturonosyltransferase 6 note galacturonosyltransferase 6 (GAUT6); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: los glycosyltransferase 5 (TAIR:AT2G30575.1). protein_id AT1G06780.2p transcript_id AT1G06780.2 protein_id AT1G06780.2p transcript_id AT1G06780.2
At1g06790	chr1:002087645	0.0	W/2087645-2087755,2087859-2087954,2088302-2088389,2088561-2088645,2088766-2088835,2088920-2089009,2089213-2089287	AT1G06790.1 CDS RNA polymerase Rpb7 N-terminal domain-containing protein [TAIR10] CDS gene_syn F4H5.12, F4H5_12 go_process transcription|GO:0006350||IEA go_function DNA-directed RNA polymerase activity|GO:0003899||IEA go_component cellular_component|GO:0005575||ND go_process transcription|GO:0006350||ISS go_function DNA-directed RNA polymerase activity|GO:0003899||ISS product RNA polymerase Rpb7 N-terminal domain-containing protein note RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 892 Blast hits to 892 proteins in 299 species: Archae - 169; Bacteria - 0; Metazoa - 273; Fungi - 266; Plants - 84; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink). protein_id AT1G06790.1p transcript_id AT1G06790.1 protein_id AT1G06790.1p transcript_id AT1G06790.1
At1g06790	chr1:002087645	0.0	W/2087645-2087755,2087859-2087954,2088302-2088389,2088561-2088645,2088766-2088835,2088920-2089039	AT1G06790.2 CDS RNA polymerase Rpb7 N-terminal domain-containing protein [TAIR10] CDS gene_syn F4H5.12, F4H5_12 go_process transcription|GO:0006350||IEA go_function DNA-directed RNA polymerase activity|GO:0003899||IEA go_component cellular_component|GO:0005575||ND go_process transcription|GO:0006350||ISS go_function DNA-directed RNA polymerase activity|GO:0003899||ISS product RNA polymerase Rpb7 N-terminal domain-containing protein note RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06790.2p transcript_id AT1G06790.2 protein_id AT1G06790.2p transcript_id AT1G06790.2
At1g06800	chr1:002089538	0.0	C/2089538-2089787,2090146-2091443	AT1G06800.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F4H5.11, F4H5_11, PLA-I{gamma}1, phospholipase A I gamma 1 gene PLA-I{gamma}1 function Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. go_process lipid metabolic process|GO:0006629||IEA go_component chloroplast|GO:0009507|19527719|IDA go_process lipid metabolic process|GO:0006629||ISS go_function triglyceride lipase activity|GO:0004806|19527719|IDA go_function triglyceride lipase activity|GO:0004806||ISS go_function phospholipase A1 activity|GO:0008970|19527719|IDA go_function galactolipase activity|GO:0047714|19527719|IDA product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G30550.2); Has 1444 Blast hits to 1435 proteins in 292 species: Archae - 0; Bacteria - 280; Metazoa - 45; Fungi - 276; Plants - 599; Viruses - 3; Other Eukaryotes - 241 (source: NCBI BLink). protein_id AT1G06800.1p transcript_id AT1G06800.1 protein_id AT1G06800.1p transcript_id AT1G06800.1
At1g06800	chr1:002090109	0.0	C/2090109-2091443	AT1G06800.2 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F4H5.11, F4H5_11, PLA-I{gamma}1, phospholipase A I gamma 1 gene PLA-I{gamma}1 function Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. go_process lipid metabolic process|GO:0006629||IEA go_component chloroplast|GO:0009507|19527719|IDA go_process lipid metabolic process|GO:0006629||ISS go_function triglyceride lipase activity|GO:0004806|19527719|IDA go_function triglyceride lipase activity|GO:0004806||ISS go_function phospholipase A1 activity|GO:0008970|19527719|IDA go_function galactolipase activity|GO:0047714|19527719|IDA product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G30550.1); Has 1442 Blast hits to 1434 proteins in 292 species: Archae - 0; Bacteria - 280; Metazoa - 45; Fungi - 278; Plants - 597; Viruses - 3; Other Eukaryotes - 239 (source: NCBI BLink). protein_id AT1G06800.2p transcript_id AT1G06800.2 protein_id AT1G06800.2p transcript_id AT1G06800.2
AT1G06800	chr1:002090109	0.0	C/2090109-2091443	AT1G06800.3 AT1G06800.3 CDS alpha/beta-Hydrolases superfamily protein
At1g06810	chr1:002091738	0.0	C/2091738-2091830,2091930-2092309,2092393-2092528	AT1G06810.1 CDS endonuclease/glycosyl hydrolase, putative [TAIR10] CDS gene_syn F4H5.25, F4H5_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G06810.1p transcript_id AT1G06810.1 protein_id AT1G06810.1p transcript_id AT1G06810.1
At1g06820	chr1:002093145	0.0	C/2093145-2093218,2093312-2093420,2093521-2093631,2093793-2093906,2094016-2094150,2094234-2094382,2094496-2094574,2094681-2094833,2094911-2094967,2095069-2095151,2095309-2095408,2095485-2095691,2095804-2096220	AT1G06820.1 CDS carotenoid isomerase [TAIR10] CDS gene_syn CAROTENOID AND CHLOROPLAST REGULATION 2, CAROTENOID ISOMERASE, CCR2, CRTISO, F4H5.10, F4H5_10, carotenoid isomerase gene CRTISO function Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene. go_component chloroplast|GO:0009507||TAS go_process etioplast organization|GO:0009662|11884677|IMP go_process carotenoid biosynthetic process|GO:0016117|11884677|IGI go_process carotenoid biosynthetic process|GO:0016117|11884677|TAS go_process carotenoid biosynthetic process|GO:0016117|11884678|TAS go_function carotenoid isomerase activity|GO:0046608|11884677|IGI go_function carotenoid isomerase activity|GO:0046608|11884677|IMP product carotenoid isomerase note carotenoid isomerase (CRTISO); CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Carotene isomerase (InterPro:IPR014101); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G57770.1); Has 6522 Blast hits to 6439 proteins in 939 species: Archae - 207; Bacteria - 2788; Metazoa - 150; Fungi - 77; Plants - 203; Viruses - 0; Other Eukaryotes - 3097 (source: NCBI BLink). protein_id AT1G06820.1p transcript_id AT1G06820.1 protein_id AT1G06820.1p transcript_id AT1G06820.1
AT1G06820	chr1:002093145	0.0	C/2093145-2093218,2093312-2093420,2093521-2093631,2093793-2093906,2094016-2094150,2094234-2094382,2094496-2094574,2094681-2094833,2094911-2094967,2095069-2095151,2095309-2095408,2095485-2095698,2095804-2095856	AT1G06820.4 AT1G06820.4 CDS carotenoid isomerase
AT1G06820	chr1:002093265	0.0	C/2093265-2093420,2093521-2093631,2093793-2093906,2094016-2094150,2094234-2094382,2094496-2094574,2094681-2094833,2094911-2094967,2095069-2095151,2095309-2095408,2095485-2095691,2095804-2096220	AT1G06820.3 AT1G06820.3 CDS carotenoid isomerase
AT1G06820	chr1:002093721	0.0	C/2093721-2093906,2094016-2094150,2094234-2094382,2094496-2094574,2094681-2094833,2094911-2094967,2095069-2095151,2095309-2095408,2095485-2095691,2095804-2096220	AT1G06820.2 AT1G06820.2 CDS carotenoid isomerase
At1g06830	chr1:002097189	0.0	W/2097189-2097488	AT1G06830.1 CDS Glutaredoxin family protein [TAIR10] CDS gene_syn F4H5.9, F4H5_9 go_component endomembrane system|GO:0012505||IEA go_process cell redox homeostasis|GO:0045454||IEA go_function electron carrier activity|GO:0009055||IEA go_function protein disulfide oxidoreductase activity|GO:0015035||IEA product Glutaredoxin family protein note Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G30540.1); Has 1028 Blast hits to 1026 proteins in 139 species: Archae - 0; Bacteria - 4; Metazoa - 195; Fungi - 77; Plants - 717; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G06830.1p transcript_id AT1G06830.1 protein_id AT1G06830.1p transcript_id AT1G06830.1
At1g06840	chr1:002097854	0.0	C/2097854-2098195,2098276-2098410,2098489-2098739,2098943-2098994,2099077-2099360,2099468-2099626,2099851-2100353,2100553-2100621,2100730-2100816,2100934-2101005,2101138-2101206,2101310-2101378,2101661-2101735,2101853-2101924,2102078-2102149,2102266-2102409,2102484-2102555,2102653-2102724,2102808-2102958,2103097-2103208	AT1G06840.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn F4H5.8, F4H5_8 go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component plasma membrane|GO:0005886|16618929|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G01950.1); Has 194453 Blast hits to 138780 proteins in 4845 species: Archae - 155; Bacteria - 17954; Metazoa - 60073; Fungi - 10970; Plants - 82493; Viruses - 385; Other Eukaryotes - 22423 (source: NCBI BLink). protein_id AT1G06840.1p transcript_id AT1G06840.1 protein_id AT1G06840.1p transcript_id AT1G06840.1
At1g06850	chr1:002105233	0.0	W/2105233-2105693,2105774-2105906,2106018-2106102,2106184-2106518	AT1G06850.1 CDS basic leucine-zipper 52 [TAIR10] CDS gene_syn AtbZIP52, F4H5.7, F4H5_7, bZIP52, basic leucine-zipper 52 gene bZIP52 go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS product basic leucine-zipper 52 note basic leucine-zipper 52 (bZIP52); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G40620.1); Has 1688 Blast hits to 1688 proteins in 185 species: Archae - 0; Bacteria - 22; Metazoa - 232; Fungi - 142; Plants - 1216; Viruses - 2; Other Eukaryotes - 74 (source: NCBI BLink). protein_id AT1G06850.1p transcript_id AT1G06850.1 protein_id AT1G06850.1p transcript_id AT1G06850.1
At1g06850	chr1:002105233	0.0	W/2105233-2105693,2105774-2106008	AT1G06850.2 CDS basic leucine-zipper 52 [TAIR10] CDS gene_syn AtbZIP52, F4H5.7, F4H5_7, bZIP52, basic leucine-zipper 52 gene bZIP52 go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS product basic leucine-zipper 52 note basic leucine-zipper 52 (bZIP52); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G40620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06850.2p transcript_id AT1G06850.2 protein_id AT1G06850.2p transcript_id AT1G06850.2
At1g06860	chr1:002107398	0.0	C/2107398-2107468	AT1G06860.1 [TAIR10] tRNA gene_syn 52131.TRNA-GLY-2 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Gly (anticodon: GCC) transcript_id AT1G06860.1
At1g06870	chr1:002108832	0.0	W/2108832-2109518,2109763-2109831,2109918-2109986,2110170-2110256,2110358-2110425,2110519-2110642	AT1G06870.1 CDS Peptidase S24/S26A/S26B/S26C family protein [TAIR10] CDS gene_syn F4H5.6, F4H5_6 go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process proteolysis|GO:0006508||IEA go_function serine-type peptidase activity|GO:0008236||IEA go_component membrane|GO:0016020||ISS go_process proteolysis|GO:0006508||ISS go_function peptidase activity|GO:0008233||ISS product Peptidase S24/S26A/S26B/S26C family protein note Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756); BEST Arabidopsis thaliana protein match is: thylakoid processing peptide (TAIR:AT2G30440.1); Has 9578 Blast hits to 9341 proteins in 2371 species: Archae - 0; Bacteria - 7160; Metazoa - 214; Fungi - 105; Plants - 244; Viruses - 0; Other Eukaryotes - 1855 (source: NCBI BLink). protein_id AT1G06870.1p transcript_id AT1G06870.1 protein_id AT1G06870.1p transcript_id AT1G06870.1
At1g06880	chr1:002111148	0.0	C/2111148-2111218	AT1G06880.1 [TAIR10] tRNA gene_syn 52131.TRNA-GLY-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Gly (anticodon: GCC) transcript_id AT1G06880.1
AT1G06890	chr1:002111585	0.0	C/2111585-2111602,2111761-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.4 AT1G06890.4 CDS nodulin MtN21 /EamA-like transporter family protein
At1g06890	chr1:002111585	0.0	C/2111585-2111605,2111761-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.3 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn F4H5.5, F4H5_5 go_component Golgi apparatus|GO:0005794|16618929|IDA go_component membrane|GO:0016020|11152613|ISS product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2). protein_id AT1G06890.3p transcript_id AT1G06890.3 protein_id AT1G06890.3p transcript_id AT1G06890.3
At1g06890	chr1:002111728	0.0	C/2111728-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.1 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn F4H5.5, F4H5_5 go_component Golgi apparatus|GO:0005794|16618929|IDA go_component membrane|GO:0016020|11152613|ISS product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink). protein_id AT1G06890.1p transcript_id AT1G06890.1 protein_id AT1G06890.1p transcript_id AT1G06890.1
At1g06890	chr1:002111728	0.0	C/2111728-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.2 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn F4H5.5, F4H5_5 go_component Golgi apparatus|GO:0005794|16618929|IDA go_component membrane|GO:0016020|11152613|ISS product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink). protein_id AT1G06890.2p transcript_id AT1G06890.2 protein_id AT1G06890.2p transcript_id AT1G06890.2
At1g06900	chr1:002115155	0.0	C/2115155-2115398,2115521-2115642,2115730-2115883,2115974-2116077,2116193-2116396,2116512-2116694,2116824-2116973,2117051-2117430,2117517-2117666,2117822-2117978,2118235-2118383,2118485-2118718,2118846-2118965,2119055-2119150,2119284-2119357,2119666-2119778,2120011-2120057,2120156-2120231,2120318-2120635	AT1G06900.1 CDS Insulinase (Peptidase family M16) family protein [TAIR10] CDS gene_syn F4H5.4, F4H5_4 go_process proteolysis|GO:0006508||IEA go_function catalytic activity|GO:0003824||IEA go_function metalloendopeptidase activity|GO:0004222||IEA go_function zinc ion binding|GO:0008270||IEA go_function metal ion binding|GO:0046872||IEA go_component cellular_component|GO:0005575||ND go_process proteolysis|GO:0006508||ISS go_function metalloendopeptidase activity|GO:0004222||ISS product Insulinase (Peptidase family M16) family protein note Insulinase (Peptidase family M16) family protein; FUNCTIONS IN: metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: Insulinase (Peptidase family M16) family protein (TAIR:AT2G41790.1); Has 36039 Blast hits to 19499 proteins in 2240 species: Archae - 83; Bacteria - 7236; Metazoa - 10750; Fungi - 4343; Plants - 1987; Viruses - 664; Other Eukaryotes - 10976 (source: NCBI BLink). protein_id AT1G06900.1p transcript_id AT1G06900.1 protein_id AT1G06900.1p transcript_id AT1G06900.1
At1g06910	chr1:002121099	0.0	W/2121099-2121681,2121788-2122074,2122437-2122621,2122708-2122768,2122858-2122914	AT1G06910.1 CDS TRF-like 7 [TAIR10] CDS gene_syn TRF-like 7, TRFL7 gene TRFL7 function Arabidopsis thaliana myb family transcription factor (At1g06910) go_function DNA binding|GO:0003677||IEA go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product TRF-like 7 note TRF-like 7 (TRFL7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to jasmonic acid stimulus, response to salicylic acid stimulus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G58340.2); Has 82 Blast hits to 80 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 66; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G06910.1p transcript_id AT1G06910.1 protein_id AT1G06910.1p transcript_id AT1G06910.1
At1g06920	chr1:002124854	0.0	C/2124854-2125801	AT1G06920.1 CDS ovate family protein 4 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ATOFP4, F4H5.2, F4H5_2, OFP4, ovate family protein 4 gene OFP4 go_process biological_process|GO:0008150||ND product ovate family protein 4 note ovate family protein 4 (OFP4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 2 (TAIR:AT2G30400.1); Has 524 Blast hits to 514 proteins in 51 species: Archae - 0; Bacteria - 6; Metazoa - 52; Fungi - 2; Plants - 429; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G06920.1p transcript_id AT1G06920.1 protein_id AT1G06920.1p transcript_id AT1G06920.1
At1g06923	chr1:002126802	0.0	W/2126802-2127000,2127085-2127398	AT1G06923.1 CDS transcription repressor OFP17-like protein [TAIR10] CDS product unknown protein note BEST Arabidopsis thaliana protein match is: ovate family protein 17 (TAIR:AT2G30395.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G06923.1p transcript_id AT1G06923.1 protein_id AT1G06923.1p transcript_id AT1G06923.1
At1g06925	chr1:002127704	0.0	C/2127704-2128037,2128151-2128216,2128580-2128611	AT1G06925.1 CDS endonuclease/glycosyl hydrolase, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT4G20480.1); Has 152 Blast hits to 136 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06925.1p transcript_id AT1G06925.1 protein_id AT1G06925.1p transcript_id AT1G06925.1
At1g06930	chr1:002129163	0.0	W/2129163-2129672	AT1G06930.1 CDS TPRXL, putative [TAIR10] CDS gene_syn F4H5.24, F4H5_24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). protein_id AT1G06930.1p transcript_id AT1G06930.1 protein_id AT1G06930.1p transcript_id AT1G06930.1
At1g06950	chr1:002130303	0.0	C/2130303-2130551,2130660-2131631,2131738-2131863,2132018-2132172,2132479-2132695,2132837-2132937,2133011-2133138,2133569-2133663,2133741-2133805,2134124-2134190,2134320-2134418,2134513-2134581,2134688-2134811,2134897-2134956,2135040-2135563	AT1G06950.1 CDS translocon at the inner envelope membrane of chloroplasts 110 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, ATTIC110, TIC110, translocon at the inner envelope membrane of chloroplasts 110 gene TIC110 function Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_component chloroplast|GO:0009507|15659100|IDA go_component Tic complex|GO:0031897|15659100|TAS go_process chloroplast organization|GO:0009658|15659100|IMP go_process protein import into chloroplast stroma|GO:0045037|15659100|IMP product translocon at the inner envelope membrane of chloroplasts 110 note translocon at the inner envelope membrane of chloroplasts 110 (TIC110); INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: chloroplast, membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 131 Blast hits to 118 proteins in 52 species: Archae - 4; Bacteria - 6; Metazoa - 16; Fungi - 9; Plants - 66; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). protein_id AT1G06950.1p transcript_id AT1G06950.1 protein_id AT1G06950.1p transcript_id AT1G06950.1
At1g06960	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F10K1.32, F10K1_32 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 815; Fungi - 369; Plants - 285; Viruses - 1; Other Eukaryotes - 192 (source: NCBI BLink). protein_id AT1G06960.1p transcript_id AT1G06960.1 protein_id AT1G06960.1p transcript_id AT1G06960.1
At1g06960	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2136964,2137067-2137218	AT1G06960.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F10K1.32, F10K1_32 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 1642 Blast hits to 1628 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 797; Fungi - 381; Plants - 271; Viruses - 1; Other Eukaryotes - 190 (source: NCBI BLink). protein_id AT1G06960.2p transcript_id AT1G06960.2 protein_id AT1G06960.2p transcript_id AT1G06960.2
AT1G06960	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2137044	AT1G06960.5 AT1G06960.5 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g06960	chr1:002135982	0.0	W/2135982-2136002,2136450-2136587,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.3 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F10K1.32, F10K1_32 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 1065 Blast hits to 1057 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 436; Fungi - 293; Plants - 198; Viruses - 1; Other Eukaryotes - 137 (source: NCBI BLink). protein_id AT1G06960.3p transcript_id AT1G06960.3 protein_id AT1G06960.3p transcript_id AT1G06960.3
AT1G06960	chr1:002135982	0.0	W/2135982-2136002,2136450-2136587,2136871-2136964,2137067-2137218	AT1G06960.6 AT1G06960.6 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
AT1G06960	chr1:002136765	0.0	W/2136765-2136773,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.4 AT1G06960.4 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g06970	chr1:002138109	0.0	W/2138109-2138360,2138485-2139480,2139577-2140818	AT1G06970.1 CDS cation/hydrogen exchanger 14 [TAIR10] CDS gene_syn ATCHX14, CHX14, F10K1.31, F10K1_31, cation/hydrogen exchanger 14 gene CHX14 function member of Putative Na+/H+ antiporter family go_component integral to membrane|GO:0016021||IEA go_process cation transport|GO:0006812|11500563|IC go_function monovalent cation:hydrogen antiporter activity|GO:0005451|11500563|NAS go_function sodium:hydrogen antiporter activity|GO:0015385||ISS product cation/hydrogen exchanger 14 note cation/hydrogen exchanger 14 (CHX14); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT2G30240.1); Has 4532 Blast hits to 4506 proteins in 1259 species: Archae - 234; Bacteria - 3237; Metazoa - 0; Fungi - 116; Plants - 574; Viruses - 0; Other Eukaryotes - 371 (source: NCBI BLink). protein_id AT1G06970.1p transcript_id AT1G06970.1 protein_id AT1G06970.1p transcript_id AT1G06970.1
At1g06980	chr1:002143248	0.0	C/2143248-2143757	AT1G06980.1 CDS 6,7-dimethyl-8-ribityllumazine synthase, putative [TAIR10] CDS gene_syn F10K1.30, F10K1_30 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G06980.1p transcript_id AT1G06980.1 protein_id AT1G06980.1p transcript_id AT1G06980.1
At1g06990	chr1:002148393	0.0	W/2148393-2149022,2149150-2149411,2149819-2150009	AT1G06990.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F10K1.29, F10K1_29 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase family protein (TAIR:AT2G24560.1); Has 3486 Blast hits to 3444 proteins in 207 species: Archae - 0; Bacteria - 314; Metazoa - 0; Fungi - 25; Plants - 3124; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). protein_id AT1G06990.1p transcript_id AT1G06990.1 protein_id AT1G06990.1p transcript_id AT1G06990.1
At1g07000	chr1:002150398	0.0	C/2150398-2151705,2151814-2152305	AT1G07000.1 CDS exocyst subunit exo70 family protein B2 [TAIR10] CDS gene_syn ATEXO70B2, EXO70B2, F10K1.28, F10K1_28, exocyst subunit exo70 family protein B2 gene EXO70B2 function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. go_component plasma membrane|GO:0005886|17644812|IDA go_process exocytosis|GO:0006887||IEA go_component exocyst|GO:0000145||ISS go_component nucleus|GO:0005634|19895414|IDA go_component cytosol|GO:0005829|19895414|IDA go_process vesicle docking involved in exocytosis|GO:0006904||ISS product exocyst subunit exo70 family protein B2 note exocyst subunit exo70 family protein B2 (EXO70B2); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, plasma membrane, exocyst; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein B1 (TAIR:AT5G58430.1); Has 788 Blast hits to 778 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 10; Plants - 642; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G07000.1p transcript_id AT1G07000.1 protein_id AT1G07000.1p transcript_id AT1G07000.1
At1g07010	chr1:002152949	0.0	W/2152949-2153132,2153196-2153308,2153391-2153423,2153504-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.3 CDS Calcineurin-like metallo-phosphoesterase superfamily protein [TAIR10] CDS gene_syn F10K1.27, F10K1_27 go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Calcineurin-like metallo-phosphoesterase superfamily protein note Calcineurin-like metallo-phosphoesterase superfamily protein; BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G18480.1); Has 109 Blast hits to 109 proteins in 48 species: Archae - 0; Bacteria - 77; Metazoa - 0; Fungi - 8; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G07010.3p transcript_id AT1G07010.3 protein_id AT1G07010.3p transcript_id AT1G07010.3
At1g07010	chr1:002152949	0.0	W/2152949-2153132,2153223-2153323,2153492-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.1 CDS Calcineurin-like metallo-phosphoesterase superfamily protein [TAIR10] CDS gene_syn F10K1.27, F10K1_27 go_component peroxisome|GO:0005777|12154131|IDA go_function hydrolase activity|GO:0016787||IEA go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Calcineurin-like metallo-phosphoesterase superfamily protein note Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G18480.1); Has 774 Blast hits to 772 proteins in 270 species: Archae - 8; Bacteria - 399; Metazoa - 0; Fungi - 31; Plants - 105; Viruses - 3; Other Eukaryotes - 228 (source: NCBI BLink). protein_id AT1G07010.1p transcript_id AT1G07010.1 protein_id AT1G07010.1p transcript_id AT1G07010.1
At1g07010	chr1:002152949	0.0	W/2152949-2153132,2153223-2153323,2153504-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.2 CDS Calcineurin-like metallo-phosphoesterase superfamily protein [TAIR10] CDS gene_syn F10K1.27, F10K1_27 go_function hydrolase activity|GO:0016787||IEA go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Calcineurin-like metallo-phosphoesterase superfamily protein note Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G18480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G07010.2p transcript_id AT1G07010.2 protein_id AT1G07010.2p transcript_id AT1G07010.2
At1g07020	chr1:002155319	0.0	C/2155319-2155755,2155878-2155884	AT1G07020.1 CDS hypothetical protein [TAIR10] CDS gene_syn F10K1.34, F10K1_34 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 39 Blast hits to 39 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 3; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G07020.1p transcript_id AT1G07020.1 protein_id AT1G07020.1p transcript_id AT1G07020.1
At1g07025	chr1:002157658	0.0	C/2157658-2158158	AT1G07025.1 CDS Mitochondrial substrate carrier family protein [TAIR10] CDS go_component membrane|GO:0016020||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function binding|GO:0005488||IEA go_component mitochondrial inner membrane|GO:0005743||ISS go_process transport|GO:0006810||ISS go_process mitochondrial transport|GO:0006839||ISS go_function binding|GO:0005488||ISS product Mitochondrial substrate carrier family protein note Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G07030.1); Has 2535 Blast hits to 2317 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 1486; Fungi - 476; Plants - 406; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink). protein_id AT1G07025.1p transcript_id AT1G07025.1 protein_id AT1G07025.1p transcript_id AT1G07025.1
At1g07030	chr1:002158631	0.0	C/2158631-2158837,2159751-2160524	AT1G07030.1 CDS Mitochondrial substrate carrier family protein [TAIR10] CDS gene_syn F10K1.26, F10K1_26 go_component mitochondrial inner membrane|GO:0005743||IEA go_component membrane|GO:0016020||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function binding|GO:0005488||IEA go_component mitochondrial inner membrane|GO:0005743||ISS go_process transport|GO:0006810||ISS go_process mitochondrial transport|GO:0006839||ISS go_function binding|GO:0005488||ISS product Mitochondrial substrate carrier family protein note Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G30160.1); Has 27351 Blast hits to 14015 proteins in 457 species: Archae - 0; Bacteria - 6; Metazoa - 11451; Fungi - 7735; Plants - 5292; Viruses - 0; Other Eukaryotes - 2867 (source: NCBI BLink). protein_id AT1G07030.1p transcript_id AT1G07030.1 protein_id AT1G07030.1p transcript_id AT1G07030.1
At1g07040	chr1:002161225	0.0	C/2161225-2161323,2161490-2161644,2161722-2161885,2161975-2162096,2162171-2162386,2162477-2162629,2162829-2163035	AT1G07040.1 CDS plant/protein [TAIR10] CDS gene_syn F10K1.25, F10K1_25 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). protein_id AT1G07040.1p transcript_id AT1G07040.1 protein_id AT1G07040.1p transcript_id AT1G07040.1
At1g07050	chr1:002164327	0.0	C/2164327-2164353,2164482-2164634,2164726-2165133	AT1G07050.1 CDS CCT motif family protein [TAIR10] CDS gene_syn F10K1.24, F10K1_24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product CCT motif family protein note CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 1772 Blast hits to 1772 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1711; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). protein_id AT1G07050.1p transcript_id AT1G07050.1 protein_id AT1G07050.1p transcript_id AT1G07050.1
AT1G07050	chr1:002164446	0.0	C/2164446-2164634,2164726-2165133	AT1G07050.2 AT1G07050.2 CDS CCT motif family protein
At1g07051	chr1:002165517	0.0	W/2165517-2165746	AT1G07051.1 [TAIR10] miRNA gene_syn MIR847A, microRNA847A gene MIR847A function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCACUCCUCUUCUUCUUGAUG go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MIR847A (microRNA847A); miRNA transcript_id AT1G07051.1
AT1G07060	chr1:002166655	0.0	C/2166655-2166842,2167206-2167347,2167671-2167814,2167965-2168172,2168258-2168397	AT1G07060.3 AT1G07060.3 CDS hypothetical protein
AT1G07060	chr1:002166655	0.0	C/2166655-2166854,2167206-2167347,2167671-2167814,2167965-2168172,2168258-2168397	AT1G07060.2 AT1G07060.2 CDS hypothetical protein
AT1G07060	chr1:002167138	0.0	C/2167138-2167347,2167671-2167814,2167965-2168126	AT1G07060.4 AT1G07060.4 CDS hypothetical protein
At1g07060	chr1:002167138	0.0	C/2167138-2167347,2167671-2167814,2167965-2168172,2168258-2168397	AT1G07060.1 CDS hypothetical protein [TAIR10] CDS gene_syn F10K1.23, F10K1_23 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07060.1p transcript_id AT1G07060.1 protein_id AT1G07060.1p transcript_id AT1G07060.1
At1g07070	chr1:002168652	0.0	W/2168652-2168683,2168909-2168944,2169341-2169569,2169662-2169703	AT1G07070.1 CDS Ribosomal protein L35Ae family protein [TAIR10] CDS gene_syn F10K1.22, F10K1_22 go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_process ribosome biogenesis|GO:0042254||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L35Ae family protein note Ribosomal protein L35Ae family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: Ribosomal protein L35Ae family protein (TAIR:AT1G74270.1); Has 767 Blast hits to 767 proteins in 257 species: Archae - 25; Bacteria - 0; Metazoa - 324; Fungi - 146; Plants - 149; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G07070.1p transcript_id AT1G07070.1 protein_id AT1G07070.1p transcript_id AT1G07070.1
At1g07080	chr1:002170069	0.0	W/2170069-2170350,2170524-2170589,2170702-2170842,2171065-2171157,2171646-2171861	AT1G07080.1 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn F10K1.21, F10K1_21 go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND go_function catalytic activity|GO:0003824||ISS product Thioredoxin superfamily protein note Thioredoxin superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol (GILT) reductase family protein (TAIR:AT5G01580.1); Has 470 Blast hits to 463 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). protein_id AT1G07080.1p transcript_id AT1G07080.1 protein_id AT1G07080.1p transcript_id AT1G07080.1
At1g07090	chr1:002174202	0.0	C/2174202-2174792	AT1G07090.1 CDS LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [TAIR10] CDS gene_syn F10K1.20, F10K1_20, LIGHT SENSITIVE HYPOCOTYLS 6, LSH6 gene LSH6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF640) note LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G58500.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07090.1p transcript_id AT1G07090.1 protein_id AT1G07090.1p transcript_id AT1G07090.1
At1g07100	chr1:002177885	0.0	W/2177885-2177958	AT1G07100.1 [TAIR10] tRNA gene_syn 61269.TRNA-ILE-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ile (anticodon: TAT) transcript_id AT1G07100.1
At1g07110	chr1:002178363	0.0	C/2178363-2178440,2178555-2178620,2178771-2178834,2178915-2178983,2179108-2179199,2179293-2179355,2179942-2180017,2180254-2180351,2180577-2180624,2180751-2180825,2180954-2181011,2181086-2181177,2181379-2181456,2181529-2181582,2181761-2181814,2181903-2181932,2182038-2182136,2182325-2182420,2182516-2182716,2182811-2183026,2183217-2183509,2183630-2183693,2183810-2183980	AT1G07110.1 CDS fructose-2,6-bisphosphatase [TAIR10] CDS gene_syn fructose-2,6-bisphosphatase, ATF2KP, F10K1.19, F10K1_19, F2KP, FKFBP, FRUCTOSE-2,6-BISPHOSPHATASE, FRUCTOSE-6-PHOSPHATE 2-KINASE gene F2KP function Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase. go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosol|GO:0005829|18433157|IDA go_process fructose metabolic process|GO:0006000|10899575|IMP go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_function fructose-2,6-bisphosphate 2-phosphatase activity|GO:0004331|10899575|IMP product fructose-2,6-bisphosphatase note fructose-2,6-bisphosphatase (F2KP); FUNCTIONS IN: fructose-2,6-bisphosphate 2-phosphatase activity; INVOLVED IN: N-terminal protein myristoylation, fructose metabolic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase (InterPro:IPR016260), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345), Fructose-2,6-bisphosphatase (InterPro:IPR003094), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), 6-phosphofructo-2-kinase (InterPro:IPR013079); BEST Arabidopsis thaliana protein match is: Plant transposase (Ptta/En/Spm family) (TAIR:AT3G30200.1); Has 5078 Blast hits to 4946 proteins in 1364 species: Archae - 8; Bacteria - 3312; Metazoa - 533; Fungi - 529; Plants - 140; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink). protein_id AT1G07110.1p transcript_id AT1G07110.1 protein_id AT1G07110.1p transcript_id AT1G07110.1
At1g07119	chr1:002184347	0.0	W/2184347-2184508,2184718-2184798,2185050-2185175,2186103-2186349,2186500-2186539	AT1G07119.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G07120 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G07119.1
At1g07120	chr1:002184874	0.0	C/2184874-2184954,2185034-2185165,2185399-2185510,2185600-2185916,2186044-2186580	AT1G07120.1 CDS CHUP1-like protein [TAIR10] CDS gene_syn F10K1.18, F10K1_18 go_component chloroplast envelope|GO:0009941|12938931|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). protein_id AT1G07120.1p transcript_id AT1G07120.1 protein_id AT1G07120.1p transcript_id AT1G07120.1
AT1G07120	chr1:002185387	0.0	C/2185387-2185510,2185600-2185916,2186044-2186580	AT1G07120.2 AT1G07120.2 CDS CHUP1-like protein
At1g07128	chr1:002187621	0.0	C/2187621-2188417	AT1G07128.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G07130 product other RNA transcript_id AT1G07128.1
At1g07130	chr1:002187928	0.0	W/2187928-2188410	AT1G07130.1 CDS Nucleic acid-binding, OB-fold-like protein [TAIR10] CDS gene_syn ATSTN1, F10K1.17, F10K1_17, STN1 gene STN1 function Encodes a protein with similarity to yeast STN1, an OB fold protein involved in protecting yeast telomeres. In Arabidopsis, loss of STN1 function mutations exhibit gross morphological abnormalities and defects in telomere architecture and maintenance. STN1 likely plays a role in telomere end capping. go_function nucleic acid binding|GO:0003676||IEA go_component nuclear chromosome, telomeric region|GO:0000784|19064932|IDA go_process telomere capping|GO:0016233|19064932|IMP product Nucleic acid-binding, OB-fold-like protein note STN1; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: telomere capping; LOCATED IN: nuclear chromosome, telomeric region; EXPRESSED IN: root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); Has 110 Blast hits to 110 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 2; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G07130.1p transcript_id AT1G07130.1 protein_id AT1G07130.1p transcript_id AT1G07130.1
AT1G07130	chr1:002187928	0.0	W/2187928-2188410	AT1G07130.2 AT1G07130.2 CDS Nucleic acid-binding, OB-fold-like protein
At1g07135	chr1:002190157	0.0	C/2190157-2190624	AT1G07135.1 CDS glycine-rich protein [TAIR10] CDS go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product glycine-rich protein note glycine-rich protein; Has 22251 Blast hits to 8348 proteins in 789 species: Archae - 21; Bacteria - 7328; Metazoa - 6126; Fungi - 1280; Plants - 3980; Viruses - 524; Other Eukaryotes - 2992 (source: NCBI BLink). protein_id AT1G07135.1p transcript_id AT1G07135.1 protein_id AT1G07135.1p transcript_id AT1G07135.1
At1g07140	chr1:002192360	0.0	C/2192360-2192613,2193030-2193155,2193262-2193413,2193534-2193688	AT1G07140.1 CDS Pleckstrin homology (PH) domain superfamily protein [TAIR10] CDS gene_syn F10K1.15, F10K1_15, RAN-BINDING PROTEIN SIRANBP, SIRANBP gene SIRANBP function Encodes a putative Ran-binding protein (siRanBP). go_process intracellular transport|GO:0046907||IEA go_component cellular_component|GO:0005575||ND go_process protein import into nucleus, translocation|GO:0000060||ISS go_function Ran GTPase binding|GO:0008536||ISS product Pleckstrin homology (PH) domain superfamily protein note SIRANBP; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1); Has 2132 Blast hits to 1580 proteins in 275 species: Archae - 9; Bacteria - 76; Metazoa - 1014; Fungi - 369; Plants - 163; Viruses - 39; Other Eukaryotes - 462 (source: NCBI BLink). protein_id AT1G07140.1p transcript_id AT1G07140.1 protein_id AT1G07140.1p transcript_id AT1G07140.1
At1g07150	chr1:002193983	0.0	C/2193983-2194089,2194362-2195736	AT1G07150.2 CDS mitogen-activated protein kinase kinase kinase 13 [TAIR10] CDS gene_syn F10K1.14, F10K1_14, MAPKKK13, mitogen-activated protein kinase kinase kinase 13 gene MAPKKK13 function member of MEKK subfamily go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product mitogen-activated protein kinase kinase kinase 13 note mitogen-activated protein kinase kinase kinase 13 (MAPKKK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 14 (TAIR:AT2G30040.1). protein_id AT1G07150.2p transcript_id AT1G07150.2 protein_id AT1G07150.2p transcript_id AT1G07150.2
At1g07150	chr1:002194279	0.0	C/2194279-2195778	AT1G07150.1 CDS mitogen-activated protein kinase kinase kinase 13 [TAIR10] CDS gene_syn F10K1.14, F10K1_14, MAPKKK13, mitogen-activated protein kinase kinase kinase 13 gene MAPKKK13 function member of MEKK subfamily go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product mitogen-activated protein kinase kinase kinase 13 note mitogen-activated protein kinase kinase kinase 13 (MAPKKK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 14 (TAIR:AT2G30040.1); Has 115480 Blast hits to 114239 proteins in 3527 species: Archae - 169; Bacteria - 12227; Metazoa - 43932; Fungi - 11802; Plants - 28183; Viruses - 583; Other Eukaryotes - 18584 (source: NCBI BLink). protein_id AT1G07150.1p transcript_id AT1G07150.1 protein_id AT1G07150.1p transcript_id AT1G07150.1
At1g07160	chr1:002198155	0.0	C/2198155-2198499,2198575-2198919,2199226-2199678	AT1G07160.1 CDS Protein phosphatase 2C family protein [TAIR10] CDS gene_syn F10K1.13, F10K1_13 go_component protein serine/threonine phosphatase complex|GO:0008287||IEA go_component chloroplast|GO:0009507||IEA go_process protein amino acid dephosphorylation|GO:0006470||IEA go_function catalytic activity|GO:0003824||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Protein phosphatase 2C family protein note Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast, protein serine/threonine phosphatase complex; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G30020.1); Has 7376 Blast hits to 7203 proteins in 674 species: Archae - 10; Bacteria - 746; Metazoa - 1767; Fungi - 814; Plants - 2696; Viruses - 11; Other Eukaryotes - 1332 (source: NCBI BLink). protein_id AT1G07160.1p transcript_id AT1G07160.1 protein_id AT1G07160.1p transcript_id AT1G07160.1
At1g07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.1 CDS PHF5-like protein [TAIR10] CDS gene_syn F10K1.35 go_component cellular_component|GO:0005575||ND product PHF5-like protein note PHF5-like protein; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1); Has 420 Blast hits to 420 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 128; Plants - 86; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). protein_id AT1G07170.1p transcript_id AT1G07170.1 protein_id AT1G07170.1p transcript_id AT1G07170.1
At1g07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.2 CDS PHF5-like protein [TAIR10] CDS gene_syn F10K1.35 go_component cellular_component|GO:0005575||ND product PHF5-like protein note PHF5-like protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1); Has 421 Blast hits to 421 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 129; Plants - 86; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). protein_id AT1G07170.2p transcript_id AT1G07170.2 protein_id AT1G07170.2p transcript_id AT1G07170.2
At1g07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.3 CDS PHF5-like protein [TAIR10] CDS gene_syn F10K1.35 go_component cellular_component|GO:0005575||ND product PHF5-like protein note PHF5-like protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1). protein_id AT1G07170.3p transcript_id AT1G07170.3 protein_id AT1G07170.3p transcript_id AT1G07170.3
AT1G07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.4 AT1G07170.4 CDS PHF5-like protein
AT1G07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.5 AT1G07170.5 CDS PHF5-like protein
AT1G07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.6 AT1G07170.6 CDS PHF5-like protein
At1g07175	chr1:002202382	0.0	W/2202382-2202472,2202650-2202770,2203071-2203122	AT1G07175.1 CDS alternative NAD(P)H dehydrogenase, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29995.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G07175.1p transcript_id AT1G07175.1 protein_id AT1G07175.1p transcript_id AT1G07175.1
AT1G07175	chr1:002202382	0.0	W/2202382-2202472,2202650-2202774	AT1G07175.2 AT1G07175.2 CDS alternative NAD(P)H dehydrogenase, putative
At1g07180	chr1:002204414	0.0	W/2204414-2204893,2205179-2205392,2205483-2205643,2205734-2205799,2205886-2206049,2206143-2206257,2206339-2206518,2206621-2206773	AT1G07180.1 CDS alternative NAD(P)H dehydrogenase 1 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, ATNDI1, F10K1.11, F10K1_11, NADH-DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 gene NDA1 function Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. go_process oxidation reduction|GO:0055114||IEA go_component mitochondrion|GO:0005739|14630960|IDA go_component intrinsic to mitochondrial inner membrane|GO:0031304|16258072|IDA go_function NADH dehydrogenase activity|GO:0003954|14630960|IMP go_function NADH dehydrogenase activity|GO:0003954||ISS product alternative NAD(P)H dehydrogenase 1 note alternative NAD(P)H dehydrogenase 1 (NDA1); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: intrinsic to mitochondrial inner membrane, mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 2 (TAIR:AT2G29990.1); Has 9792 Blast hits to 9601 proteins in 2135 species: Archae - 248; Bacteria - 7524; Metazoa - 53; Fungi - 647; Plants - 379; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink). protein_id AT1G07180.1p transcript_id AT1G07180.1 protein_id AT1G07180.1p transcript_id AT1G07180.1
At1g07190	chr1:002208013	0.0	W/2208013-2208177	AT1G07190.1 CDS Lon protease, putative [TAIR10] CDS gene_syn F10K1.10, F10K1_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: lon protease 1 (TAIR:AT5G26860.1); Has 106 Blast hits to 106 proteins in 47 species: Archae - 0; Bacteria - 34; Metazoa - 0; Fungi - 11; Plants - 56; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G07190.1p transcript_id AT1G07190.1 protein_id AT1G07190.1p transcript_id AT1G07190.1
At1g07200	chr1:002209033	0.0	C/2209033-2210301	AT1G07200.1 CDS Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F10K1.9, F10K1_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function ATP binding|GO:0005524||ISS product Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein note Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 14609 Blast hits to 14609 proteins in 2753 species: Archae - 17; Bacteria - 11747; Metazoa - 78; Fungi - 268; Plants - 440; Viruses - 0; Other Eukaryotes - 2059 (source: NCBI BLink). protein_id AT1G07200.1p transcript_id AT1G07200.1 protein_id AT1G07200.1p transcript_id AT1G07200.1
At1g07200	chr1:002209033	0.0	C/2209033-2210523,2210607-2210859,2211121-2212316	AT1G07200.2 CDS Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F10K1.9, F10K1_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function ATP binding|GO:0005524||ISS product Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein note Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 14612 Blast hits to 14412 proteins in 2715 species: Archae - 17; Bacteria - 11575; Metazoa - 78; Fungi - 306; Plants - 572; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink). protein_id AT1G07200.2p transcript_id AT1G07200.2 protein_id AT1G07200.2p transcript_id AT1G07200.2
At1g07210	chr1:002215320	0.0	W/2215320-2215422,2215513-2215856,2216155-2216241,2216327-2216386,2216477-2216668	AT1G07210.1 CDS Ribosomal protein S18 [TAIR10] CDS gene_syn F10K1.8, F10K1_8 go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein S18 note Ribosomal protein S18; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S18 (InterPro:IPR001648); Has 5527 Blast hits to 5527 proteins in 2078 species: Archae - 0; Bacteria - 4261; Metazoa - 44; Fungi - 19; Plants - 203; Viruses - 0; Other Eukaryotes - 1000 (source: NCBI BLink). protein_id AT1G07210.1p transcript_id AT1G07210.1 protein_id AT1G07210.1p transcript_id AT1G07210.1
At1g07220	chr1:002217073	0.0	C/2217073-2217420,2217499-2217709,2217795-2217859,2217936-2218125,2218202-2218552,2218669-2218907,2219260-2219379	AT1G07220.1 CDS O-glucosyltransferase rumi-like protein (DUF821) [TAIR10] CDS gene_syn F10K1.7, F10K1_7 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Arabidopsis thaliana protein of unknown function (DUF821) note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT5G23850.1); Has 670 Blast hits to 661 proteins in 130 species: Archae - 0; Bacteria - 41; Metazoa - 224; Fungi - 131; Plants - 246; Viruses - 2; Other Eukaryotes - 26 (source: NCBI BLink). protein_id AT1G07220.1p transcript_id AT1G07220.1 protein_id AT1G07220.1p transcript_id AT1G07220.1
At1g07230	chr1:002220509	0.0	C/2220509-2220834,2221206-2221382,2221680-2222778	AT1G07230.1 CDS non-specific phospholipase C1 [TAIR10] CDS gene_syn F10K1.6, F10K1_6, NPC1, non-specific phospholipase C1 gene NPC1 go_component endomembrane system|GO:0012505||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS product non-specific phospholipase C1 note non-specific phospholipase C1 (NPC1); FUNCTIONS IN: hydrolase activity, acting on ester bonds; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C2 (TAIR:AT2G26870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G07230.1p transcript_id AT1G07230.1 protein_id AT1G07230.1p transcript_id AT1G07230.1
At1g07240	chr1:002223889	0.0	W/2223889-2225331	AT1G07240.1 CDS UDP-glucosyl transferase 71C5 [TAIR10] CDS gene_syn F10K1.5, F10K1_5, UDP-glucosyl transferase 71C5, UGT71C5 gene UGT71C5 go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA product UDP-glucosyl transferase 71C5 note UDP-glucosyl transferase 71C5 (UGT71C5); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71C4 (TAIR:AT1G07250.1); Has 7681 Blast hits to 7623 proteins in 421 species: Archae - 0; Bacteria - 405; Metazoa - 2298; Fungi - 25; Plants - 4881; Viruses - 12; Other Eukaryotes - 60 (source: NCBI BLink). protein_id AT1G07240.1p transcript_id AT1G07240.1 protein_id AT1G07240.1p transcript_id AT1G07240.1
At1g07250	chr1:002225963	0.0	W/2225963-2227402	AT1G07250.1 CDS UDP-glucosyl transferase 71C4 [TAIR10] CDS gene_syn F10K1.4, F10K1_4, UDP-glucosyl transferase 71C4, UGT71C4 gene UGT71C4 go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function UDP-glucosyltransferase activity|GO:0035251|11641410|IDA go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA product UDP-glucosyl transferase 71C4 note UDP-glucosyl transferase 71C4 (UGT71C4); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71C3 (TAIR:AT1G07260.1); Has 7587 Blast hits to 7548 proteins in 444 species: Archae - 0; Bacteria - 410; Metazoa - 2119; Fungi - 25; Plants - 4933; Viruses - 39; Other Eukaryotes - 61 (source: NCBI BLink). protein_id AT1G07250.1p transcript_id AT1G07250.1 protein_id AT1G07250.1p transcript_id AT1G07250.1
At1g07260	chr1:002227748	0.0	C/2227748-2229178	AT1G07260.1 CDS UDP-glucosyl transferase 71C3 [TAIR10] CDS gene_syn F10K1.3, F10K1_3, UDP-glucosyl transferase 71C3, UGT71C3 gene UGT71C3 go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA product UDP-glucosyl transferase 71C3 note UDP-glucosyl transferase 71C3 (UGT71C3); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71C2 (TAIR:AT2G29740.1); Has 7762 Blast hits to 7715 proteins in 456 species: Archae - 0; Bacteria - 482; Metazoa - 2213; Fungi - 22; Plants - 4940; Viruses - 44; Other Eukaryotes - 61 (source: NCBI BLink). protein_id AT1G07260.1p transcript_id AT1G07260.1 protein_id AT1G07260.1p transcript_id AT1G07260.1
At1g07270	chr1:002229757	0.0	C/2229757-2229789,2229887-2229976,2230109-2230204,2230326-2230388,2230516-2230605,2230708-2230789,2230978-2231027,2231144-2231194,2231320-2231393,2231509-2231568,2231661-2231767,2231846-2231955,2232027-2232101,2232189-2232409,2232490-2232583,2232676-2232897	AT1G07270.1 CDS Cell division control, Cdc6 [TAIR10] CDS gene_syn F10K1.2, F10K1_2 go_function ATP binding|GO:0005524||IEA go_process DNA replication|GO:0006260||ISS go_process regulation of cell cycle|GO:0051726||ISS product Cell division control, Cdc6 note Cell division control, Cdc6; FUNCTIONS IN: ATP binding; INVOLVED IN: regulation of cell cycle, DNA replication; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: cell division control 6 (TAIR:AT2G29680.2); Has 1458 Blast hits to 1448 proteins in 345 species: Archae - 437; Bacteria - 0; Metazoa - 359; Fungi - 295; Plants - 123; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink). protein_id AT1G07270.1p transcript_id AT1G07270.1 protein_id AT1G07270.1p transcript_id AT1G07270.1
AT1G07270	chr1:002229967	0.0	C/2229967-2229990,2230109-2230204,2230326-2230388,2230516-2230605,2230708-2230789,2230978-2231027,2231144-2231194,2231320-2231393,2231509-2231568,2231661-2231767,2231846-2231955,2232027-2232101,2232189-2232409,2232490-2232583,2232676-2232897	AT1G07270.2 AT1G07270.2 CDS Cell division control, Cdc6
AT1G07280	chr1:002238505	0.0	W/2238505-2239910,2240026-2240107	AT1G07280.4 AT1G07280.4 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g07280	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F22G5.38, F22G5_38 go_component chloroplast|GO:0009507||IEA go_function binding|GO:0005488||IEA go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1); Has 604 Blast hits to 369 proteins in 73 species: Archae - 4; Bacteria - 161; Metazoa - 2; Fungi - 2; Plants - 383; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). protein_id AT1G07280.1p transcript_id AT1G07280.1 protein_id AT1G07280.1p transcript_id AT1G07280.1
At1g07280	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F22G5.38, F22G5_38 go_component chloroplast|GO:0009507||IEA go_function binding|GO:0005488||IEA go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07280.2p transcript_id AT1G07280.2 protein_id AT1G07280.2p transcript_id AT1G07280.2
At1g07280	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.3 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F22G5.38, F22G5_38 go_component chloroplast|GO:0009507||IEA go_function binding|GO:0005488||IEA go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G07280.3p transcript_id AT1G07280.3 protein_id AT1G07280.3p transcript_id AT1G07280.3
At1g07290	chr1:002242284	0.0	C/2242284-2242327,2242461-2242558,2242654-2242770,2243107-2243261,2243345-2243442,2243535-2243602,2243745-2243884,2243968-2244160,2244277-2244428	AT1G07290.1 CDS golgi nucleotide sugar transporter 2 [TAIR10] CDS gene_syn F22G5.37, F22G5_37, GONST2, golgi nucleotide sugar transporter 2 gene GONST2 function Encodes a GDP-mannose transporter. go_component cellular_component|GO:0005575||ND go_process nucleotide-sugar transport|GO:0015780|15480787|IGI go_process GDP-mannose transport|GO:0015784|15480787|IGI go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS product golgi nucleotide sugar transporter 2 note golgi nucleotide sugar transporter 2 (GONST2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 1 (TAIR:AT2G13650.3); Has 1672 Blast hits to 1666 proteins in 234 species: Archae - 0; Bacteria - 5; Metazoa - 480; Fungi - 272; Plants - 768; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). protein_id AT1G07290.1p transcript_id AT1G07290.1 protein_id AT1G07290.1p transcript_id AT1G07290.1
AT1G07300	chr1:002245914	0.0	C/2245914-2246293,2246816-2246840	AT1G07300.2 AT1G07300.2 CDS josephin protein-related
AT1G07300	chr1:002245914	0.0	C/2245914-2246293,2246816-2247005	AT1G07300.3 AT1G07300.3 CDS josephin protein-related
At1g07300	chr1:002245914	0.0	C/2245914-2246300	AT1G07300.1 CDS josephin protein-related [TAIR10] CDS gene_syn F22G5.36, F22G5_36 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product josephin protein-related note josephin protein-related; BEST Arabidopsis thaliana protein match is: JOSEPHIN-like protein (TAIR:AT2G29640.1); Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07300.1p transcript_id AT1G07300.1 protein_id AT1G07300.1p transcript_id AT1G07300.1
At1g07310	chr1:002247775	0.0	C/2247775-2248833	AT1G07310.1 CDS Calcium-dependent lipid-binding (CaLB domain) family protein [TAIR10] CDS gene_syn F22G5.35, F22G5_35 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Calcium-dependent lipid-binding (CaLB domain) family protein note Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G23950.1); Has 16203 Blast hits to 11144 proteins in 837 species: Archae - 8; Bacteria - 1073; Metazoa - 6146; Fungi - 3149; Plants - 3752; Viruses - 463; Other Eukaryotes - 1612 (source: NCBI BLink). protein_id AT1G07310.1p transcript_id AT1G07310.1 protein_id AT1G07310.1p transcript_id AT1G07310.1
At1g07320	chr1:002249190	0.0	W/2249190-2250021,2250173-2250189	AT1G07320.1 CDS ribosomal protein L4 [TAIR10] CDS gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4, ribosomal protein L4 gene RPL4 function encodes a plastid ribosomal protein L4 go_component nucleus|GO:0005634|14617066|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS go_component ribosome|GO:0005840||ISS go_component plastid ribosome|GO:0009547|9461586|IPI go_process translation|GO:0006412|9461586|TAS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735|9461586|ISS go_function structural constituent of ribosome|GO:0003735||ISS go_function poly(U) RNA binding|GO:0008266|17511964|IDA product ribosomal protein L4 note ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 10 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 8127 Blast hits to 8127 proteins in 2686 species: Archae - 3; Bacteria - 5615; Metazoa - 117; Fungi - 103; Plants - 95; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink). protein_id AT1G07320.1p transcript_id AT1G07320.1 protein_id AT1G07320.1p transcript_id AT1G07320.1
At1g07320	chr1:002249190	0.0	W/2249190-2250021,2250179-2250189	AT1G07320.2 CDS ribosomal protein L4 [TAIR10] CDS gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4, ribosomal protein L4 gene RPL4 function encodes a plastid ribosomal protein L4 go_component nucleus|GO:0005634|14617066|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS go_component ribosome|GO:0005840||ISS go_component plastid ribosome|GO:0009547|9461586|IPI go_process translation|GO:0006412|9461586|TAS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735|9461586|ISS go_function structural constituent of ribosome|GO:0003735||ISS go_function poly(U) RNA binding|GO:0008266|17511964|IDA product ribosomal protein L4 note ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 8071 Blast hits to 8071 proteins in 2657 species: Archae - 3; Bacteria - 5559; Metazoa - 117; Fungi - 103; Plants - 95; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink). protein_id AT1G07320.2p transcript_id AT1G07320.2 protein_id AT1G07320.2p transcript_id AT1G07320.2
At1g07320	chr1:002249190	0.0	W/2249190-2250025,2250173-2250173	AT1G07320.4 CDS ribosomal protein L4 [TAIR10] CDS gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4, ribosomal protein L4 gene RPL4 function encodes a plastid ribosomal protein L4 go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS go_component ribosome|GO:0005840||ISS go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component plastid ribosome|GO:0009547|9461586|IPI go_process translation|GO:0006412|9461586|TAS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735|9461586|ISS go_function structural constituent of ribosome|GO:0003735||ISS go_function poly(U) RNA binding|GO:0008266|17511964|IDA product ribosomal protein L4 note ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07320.4p transcript_id AT1G07320.4 protein_id AT1G07320.4p transcript_id AT1G07320.4
At1g07320	chr1:002249190	0.0	W/2249190-2250026	AT1G07320.3 CDS ribosomal protein L4 [TAIR10] CDS gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4, ribosomal protein L4 gene RPL4 function encodes a plastid ribosomal protein L4 go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS go_component ribosome|GO:0005840||ISS go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component plastid ribosome|GO:0009547|9461586|IPI go_process translation|GO:0006412|9461586|TAS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735|9461586|ISS go_function structural constituent of ribosome|GO:0003735||ISS go_function poly(U) RNA binding|GO:0008266|17511964|IDA product ribosomal protein L4 note ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07320.3p transcript_id AT1G07320.3 protein_id AT1G07320.3p transcript_id AT1G07320.3
At1g07330	chr1:002251131	0.0	W/2251131-2251208,2251413-2252268,2252355-2253115,2253223-2253585	AT1G07330.1 CDS dentin sialophosphoprotein [TAIR10] CDS gene_syn F22G5.33, F22G5_33 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 597 Blast hits to 536 proteins in 121 species: Archae - 2; Bacteria - 47; Metazoa - 170; Fungi - 43; Plants - 98; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). protein_id AT1G07330.1p transcript_id AT1G07330.1 protein_id AT1G07330.1p transcript_id AT1G07330.1
AT1G07330	chr1:002251131	0.0	W/2251131-2252268,2252355-2253115,2253223-2253585	AT1G07330.2 AT1G07330.2 CDS dentin sialophosphoprotein
At1g07340	chr1:002254873	0.0	W/2254873-2255005,2255088-2255407,2255570-2256196,2256296-2256712	AT1G07340.1 CDS sugar transporter 2 [TAIR10] CDS gene_syn ATSTP2, F22G5.32, F22G5_32, STP2, sugar transporter 2 gene STP2 go_component integral to plasma membrane|GO:0005887|10074716|ISS go_component membrane|GO:0016020||ISS go_process pollen development|GO:0009555|10074716|TAS go_process monosaccharide transport|GO:0015749|10074716|TAS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS go_function monosaccharide transmembrane transporter activity|GO:0015145|10074716|IDA product sugar transporter 2 note sugar transporter 2 (STP2); CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26250.1); Has 22673 Blast hits to 22229 proteins in 1760 species: Archae - 425; Bacteria - 7839; Metazoa - 4193; Fungi - 6598; Plants - 2480; Viruses - 0; Other Eukaryotes - 1138 (source: NCBI BLink). protein_id AT1G07340.1p transcript_id AT1G07340.1 protein_id AT1G07340.1p transcript_id AT1G07340.1
At1g07350	chr1:002257732	0.0	C/2257732-2257906,2257988-2258447,2258539-2258602,2259003-2259152,2259277-2259385,2259486-2259586,2260012-2260101	AT1G07350.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F22G5.31, F22G5_31 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1); Has 998067 Blast hits to 992400 proteins in 35925 species: Archae - 21556; Bacteria - 596698; Metazoa - 207042; Fungi - 24534; Plants - 55970; Viruses - 68919; Other Eukaryotes - 23348 (source: NCBI BLink). protein_id AT1G07350.1p transcript_id AT1G07350.1 protein_id AT1G07350.1p transcript_id AT1G07350.1
AT1G07350	chr1:002258751	0.0	C/2258751-2259152,2259277-2259385,2259486-2259586,2260012-2260101	AT1G07350.4 AT1G07350.4 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
AT1G07350	chr1:002258751	0.0	C/2258751-2259152,2259277-2259385,2259486-2259586	AT1G07350.6 AT1G07350.6 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
AT1G07350	chr1:002258816	0.0	C/2258816-2258845,2259003-2259152,2259277-2259385,2259486-2259586,2260012-2260101	AT1G07350.5 AT1G07350.5 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g07350	chr1:002258816	0.0	C/2258816-2258845,2259003-2259152,2259277-2259385,2259486-2259586	AT1G07350.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F22G5.31, F22G5_31 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.3); Has 999351 Blast hits to 998918 proteins in 36088 species: Archae - 21775; Bacteria - 603314; Metazoa - 202027; Fungi - 24253; Plants - 55487; Viruses - 69473; Other Eukaryotes - 23022 (source: NCBI BLink). protein_id AT1G07350.2p transcript_id AT1G07350.2 protein_id AT1G07350.2p transcript_id AT1G07350.2
AT1G07350	chr1:002258816	0.0	C/2258816-2258845,2259003-2259152,2259277-2259385,2259486-2259586	AT1G07350.3 AT1G07350.3 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g07360	chr1:002260562	0.0	C/2260562-2261408,2261740-2261963,2262085-2262354,2262691-2262795	AT1G07360.1 CDS CCCH-type zinc fingerfamily protein with RNA-binding domain [TAIR10] CDS gene_syn F22G5.30, F22G5_30 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product CCCH-type zinc fingerfamily protein with RNA-binding domain note CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G29580.1); Has 18250 Blast hits to 13471 proteins in 794 species: Archae - 12; Bacteria - 1319; Metazoa - 6997; Fungi - 3518; Plants - 3570; Viruses - 267; Other Eukaryotes - 2567 (source: NCBI BLink). protein_id AT1G07360.1p transcript_id AT1G07360.1 protein_id AT1G07360.1p transcript_id AT1G07360.1
At1g07370	chr1:002263204	0.0	W/2263204-2263522,2263715-2263867,2263951-2264048,2264161-2264382	AT1G07370.1 CDS proliferating cellular nuclear antigen 1 [TAIR10] CDS gene_syn ATPCNA1, F22G5.29, F22G5_29, PCNA1, PROLIFERATING CELLULAR NUCLEAR ANTIGEN, PROLIFERATING CELLULAR NUCLEAR ANTIGEN 1, proliferating cellular nuclear antigen 1 gene PCNA1 function Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. go_component nucleus|GO:0005634|15610358|IDA go_component nucleus|GO:0005634||ISS go_component nucleolus|GO:0005730|15610358|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_process regulation of DNA replication|GO:0006275||ISS go_process regulation of cell cycle|GO:0051726|12631321|ISS go_function DNA binding|GO:0003677||ISS go_function protein binding|GO:0005515|16771839|IPI go_function DNA polymerase processivity factor activity|GO:0030337||ISS product proliferating cellular nuclear antigen 1 note proliferating cellular nuclear antigen 1 (PCNA1); CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730), Proliferating cell nuclear antigen, PCNA, C-terminal (InterPro:IPR022649), Proliferating cell nuclear antigen, PCNA, conserved site (InterPro:IPR022659), Proliferating cell nuclear antigen, PCNA, N-terminal (InterPro:IPR022648); BEST Arabidopsis thaliana protein match is: proliferating cell nuclear antigen 2 (TAIR:AT2G29570.1); Has 1857 Blast hits to 1845 proteins in 456 species: Archae - 391; Bacteria - 0; Metazoa - 315; Fungi - 169; Plants - 159; Viruses - 71; Other Eukaryotes - 752 (source: NCBI BLink). protein_id AT1G07370.1p transcript_id AT1G07370.1 protein_id AT1G07370.1p transcript_id AT1G07370.1
At1g07380	chr1:002264829	0.0	C/2264829-2265088,2265474-2265768,2265858-2266027,2266113-2266176,2266258-2266383,2266473-2266743,2266855-2267119,2267209-2267553,2267655-2267863,2267972-2268306	AT1G07380.1 CDS Neutral/alkaline non-lysosomal ceramidase [TAIR10] CDS gene_syn F22G5.28, F22G5_28 go_component plasma membrane|GO:0005886|17151019|IDA go_process biological_process|GO:0008150||ND go_function ceramidase activity|GO:0017040||ISS product Neutral/alkaline non-lysosomal ceramidase note Neutral/alkaline non-lysosomal ceramidase; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: Neutral/alkaline non-lysosomal ceramidase (TAIR:AT5G58980.1); Has 713 Blast hits to 570 proteins in 199 species: Archae - 0; Bacteria - 295; Metazoa - 184; Fungi - 101; Plants - 78; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). protein_id AT1G07380.1p transcript_id AT1G07380.1 protein_id AT1G07380.1p transcript_id AT1G07380.1
AT1G07380	chr1:002264829	0.0	C/2264829-2265088,2265474-2265768,2265858-2266027,2266113-2266176,2266258-2266383,2266473-2266743,2266855-2267119,2267209-2267553,2267655-2267863,2267972-2268309	AT1G07380.2 AT1G07380.2 CDS Neutral/alkaline non-lysosomal ceramidase
AT1G07390	chr1:002269764	0.0	W/2269764-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2272534,2272622-2274654	AT1G07390.5 AT1G07390.5 CDS receptor like protein 1
AT1G07390	chr1:002269764	0.0	W/2269764-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.4 AT1G07390.4 CDS receptor like protein 1
At1g07390	chr1:002269893	0.0	W/2269893-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2271675-2271736,2271808-2271879,2272022-2272034,2272123-2272191,2272451-2274654	AT1G07390.3 CDS receptor like protein 1 [TAIR10] CDS gene_syn AtRLP1, F22G5.26, F22G5_26, RLP1, receptor like protein 1 gene RLP1 go_component cellular_component|GO:0005575||ND go_process signal transduction|GO:0007165|11751054|IC product receptor like protein 1 note receptor like protein 1 (RLP1); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 15 (TAIR:AT1G74190.1); Has 131801 Blast hits to 32287 proteins in 1280 species: Archae - 68; Bacteria - 10618; Metazoa - 36270; Fungi - 1824; Plants - 73532; Viruses - 22; Other Eukaryotes - 9467 (source: NCBI BLink). protein_id AT1G07390.3p transcript_id AT1G07390.3 protein_id AT1G07390.3p transcript_id AT1G07390.3
At1g07390	chr1:002269893	0.0	W/2269893-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.1 CDS receptor like protein 1 [TAIR10] CDS gene_syn AtRLP1, F22G5.26, F22G5_26, RLP1, receptor like protein 1 gene RLP1 go_component cellular_component|GO:0005575||ND go_process signal transduction|GO:0007165|11751054|IC product receptor like protein 1 note receptor like protein 1 (RLP1); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 9 (TAIR:AT1G58190.2); Has 135653 Blast hits to 34187 proteins in 1325 species: Archae - 66; Bacteria - 11060; Metazoa - 39671; Fungi - 1897; Plants - 72882; Viruses - 44; Other Eukaryotes - 10033 (source: NCBI BLink). protein_id AT1G07390.1p transcript_id AT1G07390.1 protein_id AT1G07390.1p transcript_id AT1G07390.1
At1g07390	chr1:002270633	0.0	W/2270633-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.2 CDS receptor like protein 1 [TAIR10] CDS gene_syn AtRLP1, F22G5.26, F22G5_26, RLP1, receptor like protein 1 gene RLP1 go_component cellular_component|GO:0005575||ND go_process signal transduction|GO:0007165|11751054|IC product receptor like protein 1 note receptor like protein 1 (RLP1); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 15 (TAIR:AT1G74190.1); Has 131424 Blast hits to 33577 proteins in 1318 species: Archae - 64; Bacteria - 10691; Metazoa - 37239; Fungi - 1778; Plants - 72173; Viruses - 36; Other Eukaryotes - 9443 (source: NCBI BLink). protein_id AT1G07390.2p transcript_id AT1G07390.2 protein_id AT1G07390.2p transcript_id AT1G07390.2
At1g07400	chr1:002275148	0.0	W/2275148-2275621	AT1G07400.1 CDS HSP20-like chaperones superfamily protein [TAIR10] CDS gene_syn F22G5.25, F22G5_25 go_process response to oxidative stress|GO:0006979|15634198|IEP go_process response to heat|GO:0009408||ISS product HSP20-like chaperones superfamily protein note HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G59860.1); Has 7238 Blast hits to 7237 proteins in 1623 species: Archae - 225; Bacteria - 4290; Metazoa - 129; Fungi - 318; Plants - 1626; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink). protein_id AT1G07400.1p transcript_id AT1G07400.1 protein_id AT1G07400.1p transcript_id AT1G07400.1
At1g07410	chr1:002276270	0.0	W/2276270-2276434,2276675-2277154	AT1G07410.1 CDS RAB GTPase homolog A2B [TAIR10] CDS gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A2B, ATRAB-A2B, ATRABA2B, F22G5.24, F22G5_24, RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B, RAB-A2B, RABA2b gene RABA2b go_component plasma membrane|GO:0005886|17644812|IDA go_process intracellular protein transport|GO:0006886||IEA go_process nucleocytoplasmic transport|GO:0006913||IEA go_process signal transduction|GO:0007165||IEA go_process small GTPase mediated signal transduction|GO:0007264||IEA go_process protein transport|GO:0015031||IEA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_component endosome|GO:0005768|18239134|IDA go_component cell plate|GO:0009504|18239134|IDA go_function GTP binding|GO:0005525||ISS product RAB GTPase homolog A2B note RAB GTPase homolog A2B (RABA2b); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), ADP-ribosylation factor (InterPro:IPR006688), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1); Has 28965 Blast hits to 28914 proteins in 772 species: Archae - 29; Bacteria - 152; Metazoa - 15139; Fungi - 4328; Plants - 3313; Viruses - 20; Other Eukaryotes - 5984 (source: NCBI BLink). protein_id AT1G07410.1p transcript_id AT1G07410.1 protein_id AT1G07410.1p transcript_id AT1G07410.1
At1g07420	chr1:002277910	0.0	W/2277910-2277939,2278587-2278724,2278972-2279117,2279258-2279377,2279466-2279678,2279777-2279857,2279961-2280033	AT1G07420.1 CDS sterol 4-alpha-methyl-oxidase 2-1 [TAIR10] CDS gene_syn ATSMO2, F22G5.23, F22G5_23, SMO2-1, STEROL 4-ALPHA-METHYL-OXIDASE 2, sterol 4-alpha-methyl-oxidase 2-1 gene SMO2-1 function Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process fatty acid biosynthetic process|GO:0006633||IEA go_process oxidation reduction|GO:0055114||IEA go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI product sterol 4-alpha-methyl-oxidase 2-1 note sterol 4-alpha-methyl-oxidase 2-1 (SMO2-1); FUNCTIONS IN: C-4 methylsterol oxidase activity, 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol 4-alpha-methyl-oxidase 2-2 (TAIR:AT2G29390.2); Has 2893 Blast hits to 2888 proteins in 513 species: Archae - 0; Bacteria - 699; Metazoa - 429; Fungi - 685; Plants - 484; Viruses - 3; Other Eukaryotes - 593 (source: NCBI BLink). protein_id AT1G07420.1p transcript_id AT1G07420.1 protein_id AT1G07420.1p transcript_id AT1G07420.1
At1g07420	chr1:002278918	0.0	W/2278918-2279117,2279258-2279377,2279466-2279678,2279777-2279857,2279961-2280033	AT1G07420.2 CDS sterol 4-alpha-methyl-oxidase 2-1 [TAIR10] CDS gene_syn ATSMO2, F22G5.23, F22G5_23, SMO2-1, STEROL 4-ALPHA-METHYL-OXIDASE 2, sterol 4-alpha-methyl-oxidase 2-1 gene SMO2-1 function Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA go_process fatty acid biosynthetic process|GO:0006633||IEA go_process oxidation reduction|GO:0055114||IEA go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI product sterol 4-alpha-methyl-oxidase 2-1 note sterol 4-alpha-methyl-oxidase 2-1 (SMO2-1); FUNCTIONS IN: C-4 methylsterol oxidase activity, 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol 4-alpha-methyl-oxidase 2-2 (TAIR:AT2G29390.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07420.2p transcript_id AT1G07420.2 protein_id AT1G07420.2p transcript_id AT1G07420.2
At1g07430	chr1:002281151	0.0	C/2281151-2281663,2281748-2282059,2282153-2282656	AT1G07430.1 CDS highly ABA-induced PP2C gene 2 [TAIR10] CDS gene_syn F22G5.22, F22G5_22, HAI2, highly ABA-induced PP2C gene 2 gene HAI2 go_component protein serine/threonine phosphatase complex|GO:0008287||IEA go_process protein amino acid dephosphorylation|GO:0006470||IEA go_function catalytic activity|GO:0003824||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product highly ABA-induced PP2C gene 2 note highly ABA-induced PP2C gene 2 (HAI2); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 3 (TAIR:AT2G29380.1); Has 6753 Blast hits to 6737 proteins in 407 species: Archae - 6; Bacteria - 193; Metazoa - 1700; Fungi - 794; Plants - 2782; Viruses - 7; Other Eukaryotes - 1271 (source: NCBI BLink). protein_id AT1G07430.1p transcript_id AT1G07430.1 protein_id AT1G07430.1p transcript_id AT1G07430.1
At1g07440	chr1:002286436	0.0	C/2286436-2286624,2286712-2286818,2287011-2287227,2287300-2287507,2287586-2287665	AT1G07440.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F22G5.39, F22G5_39 go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND go_process response to cadmium ion|GO:0046686|20005002|IEP go_process response to karrikin|GO:0080167|20351290|IEP go_function oxidoreductase activity|GO:0016491||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: response to cadmium ion, response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT2G29340.1); Has 123507 Blast hits to 123216 proteins in 3599 species: Archae - 988; Bacteria - 81523; Metazoa - 5145; Fungi - 6175; Plants - 2670; Viruses - 5; Other Eukaryotes - 27001 (source: NCBI BLink). protein_id AT1G07440.1p transcript_id AT1G07440.1 protein_id AT1G07440.1p transcript_id AT1G07440.1
At1g07440	chr1:002286991	0.0	C/2286991-2287227,2287300-2287507,2287586-2287665	AT1G07440.2 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F22G5.39, F22G5_39 go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND go_process response to cadmium ion|GO:0046686|20005002|IEP go_process response to karrikin|GO:0080167|20351290|IEP go_function oxidoreductase activity|GO:0016491||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: response to cadmium ion, response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT2G29340.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07440.2p transcript_id AT1G07440.2 protein_id AT1G07440.2p transcript_id AT1G07440.2
At1g07450	chr1:002288038	0.0	C/2288038-2288223,2288309-2288415,2288500-2288713,2288849-2289056,2289189-2289256	AT1G07450.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F22G5.20, F22G5_20 go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity|GO:0016491||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase (TAIR:AT2G29330.1); Has 110061 Blast hits to 109928 proteins in 3503 species: Archae - 928; Bacteria - 73032; Metazoa - 4466; Fungi - 5399; Plants - 2523; Viruses - 2; Other Eukaryotes - 23711 (source: NCBI BLink). protein_id AT1G07450.1p transcript_id AT1G07450.1 protein_id AT1G07450.1p transcript_id AT1G07450.1
AT1G07460	chr1:002290009	0.0	W/2290009-2290977	AT1G07460.2 AT1G07460.2 CDS Concanavalin A-like lectin family protein
At1g07460	chr1:002290201	0.0	W/2290201-2290977	AT1G07460.1 CDS Concanavalin A-like lectin family protein [TAIR10] CDS gene_syn F22G5.19, F22G5_19 go_function binding|GO:0005488||IEA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND go_function carbohydrate binding|GO:0030246||ISS product Concanavalin A-like lectin family protein note Concanavalin A-like lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT2G29220.1); Has 2091 Blast hits to 2069 proteins in 128 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 2059; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G07460.1p transcript_id AT1G07460.1 protein_id AT1G07460.1p transcript_id AT1G07460.1
At1g07470	chr1:002291723	0.0	W/2291723-2291848,2292027-2292191,2292305-2292457,2292540-2292585,2292659-2292717,2292896-2293006,2293336-2293479,2293777-2293837,2293926-2294080,2294171-2294254,2294327-2294350	AT1G07470.1 CDS Transcription factor IIA, alpha/beta subunit [TAIR10] CDS gene_syn F22G5.18, F22G5_18 go_component transcription factor TFIIA complex|GO:0005672||IEA go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA go_function RNA polymerase II transcription factor activity|GO:0003702||IEA go_process transcription|GO:0006350||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Transcription factor IIA, alpha/beta subunit note Transcription factor IIA, alpha/beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: Transcription factor IIA, alpha/beta subunit (TAIR:AT1G07480.2); Has 705 Blast hits to 589 proteins in 189 species: Archae - 0; Bacteria - 16; Metazoa - 386; Fungi - 167; Plants - 79; Viruses - 7; Other Eukaryotes - 50 (source: NCBI BLink). protein_id AT1G07470.1p transcript_id AT1G07470.1 protein_id AT1G07470.1p transcript_id AT1G07470.1
AT1G07470	chr1:002291723	0.0	W/2291723-2291848,2292027-2292191,2292305-2292457,2292540-2292585,2292659-2292717,2292896-2293006,2293336-2293479,2293777-2293837,2293926-2294080,2294171-2294254,2294327-2294350	AT1G07470.2 AT1G07470.2 CDS Transcription factor IIA, alpha/beta subunit
At1g07473	chr1:002294728	0.0	C/2294728-2295105	AT1G07473.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07473.1p transcript_id AT1G07473.1 protein_id AT1G07473.1p transcript_id AT1G07473.1
At1g07476	chr1:002295805	0.0	W/2295805-2296353	AT1G07476.1 CDS transmembrane protein, putative [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07473.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07476.1p transcript_id AT1G07476.1 protein_id AT1G07476.1p transcript_id AT1G07476.1
At1g07480	chr1:002296706	0.0	C/2296706-2296729,2296810-2296893,2296983-2297137,2297225-2297285,2297530-2297673,2297826-2297936,2298128-2298186,2298280-2298325,2298481-2298633,2298747-2298911,2299090-2299215	AT1G07480.1 CDS Transcription factor IIA, alpha/beta subunit [TAIR10] CDS gene_syn F22G5.14, F22G5_14 go_component transcription factor TFIIA complex|GO:0005672||IEA go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA go_function RNA polymerase II transcription factor activity|GO:0003702||IEA go_process transcription|GO:0006350||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Transcription factor IIA, alpha/beta subunit note Transcription factor IIA, alpha/beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: Transcription factor IIA, alpha/beta subunit (TAIR:AT1G07470.1); Has 733 Blast hits to 623 proteins in 191 species: Archae - 0; Bacteria - 29; Metazoa - 394; Fungi - 169; Plants - 77; Viruses - 10; Other Eukaryotes - 54 (source: NCBI BLink). protein_id AT1G07480.1p transcript_id AT1G07480.1 protein_id AT1G07480.1p transcript_id AT1G07480.1
At1g07480	chr1:002296706	0.0	C/2296706-2296729,2296810-2296893,2296983-2297137,2297225-2297285,2297530-2297673,2297826-2297936,2298128-2298186,2298280-2298325,2298481-2298633,2298747-2298911,2299090-2299215	AT1G07480.2 CDS Transcription factor IIA, alpha/beta subunit [TAIR10] CDS gene_syn F22G5.14, F22G5_14 go_component transcription factor TFIIA complex|GO:0005672||IEA go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA go_function RNA polymerase II transcription factor activity|GO:0003702||IEA go_process transcription|GO:0006350||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Transcription factor IIA, alpha/beta subunit note Transcription factor IIA, alpha/beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: Transcription factor IIA, alpha/beta subunit (TAIR:AT1G07470.1); Has 733 Blast hits to 623 proteins in 191 species: Archae - 0; Bacteria - 29; Metazoa - 394; Fungi - 169; Plants - 77; Viruses - 10; Other Eukaryotes - 54 (source: NCBI BLink). protein_id AT1G07480.2p transcript_id AT1G07480.2 protein_id AT1G07480.2p transcript_id AT1G07480.2
AT1G07480	chr1:002296768	0.0	C/2296768-2296893,2296983-2297137,2297225-2297285,2297530-2297673,2297826-2297936,2298128-2298186,2298280-2298325,2298481-2298633,2298747-2298911,2299090-2299215	AT1G07480.3 AT1G07480.3 CDS Transcription factor IIA, alpha/beta subunit
At1g07485	chr1:002301505	0.0	W/2301505-2301579,2301665-2301892	AT1G07485.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07485.1p transcript_id AT1G07485.1 protein_id AT1G07485.1p transcript_id AT1G07485.1
At1g07490	chr1:002301526	0.0	C/2301526-2301849	AT1G07490.1 CDS ROTUNDIFOLIA like 3 [TAIR10] CDS gene_syn DEVIL 9, DVL9, F22G5.13, F22G5_13, ROTUNDIFOLIA like 3, RTFL3 gene RTFL3 go_component chloroplast|GO:0009507||IEA go_process shoot development|GO:0048367|14871303|ISS go_function molecular_function|GO:0003674||ND product ROTUNDIFOLIA like 3 note ROTUNDIFOLIA like 3 (RTFL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 5 (TAIR:AT5G59510.1); Has 4671 Blast hits to 722 proteins in 119 species: Archae - 0; Bacteria - 250; Metazoa - 1223; Fungi - 536; Plants - 223; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink). protein_id AT1G07490.1p transcript_id AT1G07490.1 protein_id AT1G07490.1p transcript_id AT1G07490.1
At1g07500	chr1:002304766	0.0	C/2304766-2304867,2304909-2305031	AT1G07500.1 CDS hypothetical protein [TAIR10] CDS gene_syn F22G5.11, F22G5_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07500.1p transcript_id AT1G07500.1 protein_id AT1G07500.1p transcript_id AT1G07500.1
At1g07510	chr1:002305689	0.0	W/2305689-2305739,2305826-2306057,2306153-2306221,2306458-2306591,2306698-2307180,2307281-2308048,2308284-2308511,2308904-2309380	AT1G07510.1 CDS FTSH protease 10 [TAIR10] CDS gene_syn F22G5.10, F22G5_10, FTSH protease 10, ftsh10 gene ftsh10 function encodes an FtsH protease that is localized to the mitochondrion go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_process proteolysis|GO:0006508||IEA go_process protein catabolic process|GO:0030163||IEA go_function nucleotide binding|GO:0000166||IEA go_function metalloendopeptidase activity|GO:0004222||IEA go_function ATP binding|GO:0005524||IEA go_function zinc ion binding|GO:0008270||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_component mitochondrion|GO:0005739|14630971|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrion|GO:0005739|16618929|IDA go_component plastid|GO:0009536|16618929|IDA go_function ATPase activity|GO:0016887||ISS product FTSH protease 10 note FTSH protease 10 (ftsh10); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 3 (TAIR:AT2G29080.1); Has 37747 Blast hits to 35440 proteins in 3262 species: Archae - 1533; Bacteria - 14237; Metazoa - 4767; Fungi - 3643; Plants - 3223; Viruses - 27; Other Eukaryotes - 10317 (source: NCBI BLink). protein_id AT1G07510.1p transcript_id AT1G07510.1 protein_id AT1G07510.1p transcript_id AT1G07510.1
AT1G07520	chr1:002309718	0.0	C/2309718-2311313	AT1G07520.2 AT1G07520.2 CDS GRAS family transcription factor
AT1G07520	chr1:002309718	0.0	C/2309718-2311313	AT1G07520.4 AT1G07520.4 CDS GRAS family transcription factor
At1g07520	chr1:002309718	0.0	C/2309718-2311805	AT1G07520.1 CDS GRAS family transcription factor [TAIR10] CDS gene_syn F22G5.41, F22G5_41 go_component cellular_component|GO:0005575||ND go_process response to chitin|GO:0010200|17722694|IEP go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product GRAS family transcription factor note GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29065.1); Has 2426 Blast hits to 2385 proteins in 289 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 2411; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G07520.1p transcript_id AT1G07520.1 protein_id AT1G07520.1p transcript_id AT1G07520.1
AT1G07520	chr1:002309718	0.0	C/2309718-2311808	AT1G07520.3 AT1G07520.3 CDS GRAS family transcription factor
At1g07530	chr1:002313828	0.0	C/2313828-2316137	AT1G07530.1 CDS SCARECROW-like 14 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA GRAS (GAI, RGA, SCR) 2, ATGRAS2, F22G5.9, F22G5_9, GRAS (GAI, RGA, SCR) 2, GRAS2, SCARECROW-like 14, SCL14 gene SCL14 function Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm. go_component nucleus|GO:0005634|18984675|IDA go_component cytosol|GO:0005829|18984675|IDA go_process response to xenobiotic stimulus|GO:0009410|18984675|IMP go_process positive regulation of gene-specific transcription|GO:0043193|18984675|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product SCARECROW-like 14 note SCARECROW-like 14 (SCL14); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29060.1); Has 2535 Blast hits to 2449 proteins in 301 species: Archae - 0; Bacteria - 12; Metazoa - 27; Fungi - 4; Plants - 2483; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G07530.1p transcript_id AT1G07530.1 protein_id AT1G07530.1p transcript_id AT1G07530.1
At1g07540	chr1:002318433	0.0	C/2318433-2318612,2318692-2318755,2318854-2319120,2319220-2319461,2319550-2319629,2319715-2319789,2319874-2320038,2320129-2320867,2320968-2321048	AT1G07540.1 CDS TRF-like 2 [TAIR10] CDS gene_syn F22G5.8, F22G5_8, TRF-like 2, TRFL2 gene TRFL2 function Arabidopsis thaliana telomere-binding protein, putative (At1g07540) go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product TRF-like 2 note TRF-like 2 (TRFL2); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 1 (TAIR:AT3G46590.2); Has 350 Blast hits to 338 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 309; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). protein_id AT1G07540.1p transcript_id AT1G07540.1 protein_id AT1G07540.1p transcript_id AT1G07540.1
At1g07550	chr1:002322709	0.0	C/2322709-2323114,2323229-2323415,2323523-2323588,2323671-2323797,2323904-2324100,2324185-2324330,2324417-2324494,2324588-2324659,2324727-2324798,2324888-2325032,2325108-2325586,2325768-2326305,2326431-2326512	AT1G07550.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn F22G5.7, F22G5_7 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G14510.1); Has 160053 Blast hits to 116886 proteins in 4275 species: Archae - 103; Bacteria - 12717; Metazoa - 42496; Fungi - 9017; Plants - 77350; Viruses - 370; Other Eukaryotes - 18000 (source: NCBI BLink). protein_id AT1G07550.1p transcript_id AT1G07550.1 protein_id AT1G07550.1p transcript_id AT1G07550.1
At1g07560	chr1:002327320	0.0	W/2327320-2327404,2327546-2328083,2328172-2328653,2328731-2328875,2328981-2329052,2329190-2329261,2329343-2329420,2329534-2329694,2329784-2329992,2330076-2330202,2330290-2330346,2330429-2330618,2330697-2331096	AT1G07560.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn F22G5.6, F22G5_6 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G51820.1); Has 156630 Blast hits to 118524 proteins in 4343 species: Archae - 91; Bacteria - 13045; Metazoa - 42701; Fungi - 9322; Plants - 73192; Viruses - 348; Other Eukaryotes - 17931 (source: NCBI BLink). protein_id AT1G07560.1p transcript_id AT1G07560.1 protein_id AT1G07560.1p transcript_id AT1G07560.1
At1g07570	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333074-2333149	AT1G07570.3 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn APK1, APK1A, F22G5.5, F22G5_5 gene APK1A function Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein serine/threonine kinase activity|GO:0004674|1450380|IDA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note APK1A; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: protein kinase 1B (TAIR:AT2G28930.3). protein_id AT1G07570.3p transcript_id AT1G07570.3 protein_id AT1G07570.3p transcript_id AT1G07570.3
At1g07570	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333168-2333210	AT1G07570.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn APK1, APK1A, F22G5.5, F22G5_5 gene APK1A function Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function protein serine/threonine kinase activity|GO:0004674|1450380|IDA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note APK1A; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase 1B (TAIR:AT2G28930.2); Has 112484 Blast hits to 111280 proteins in 3934 species: Archae - 89; Bacteria - 12638; Metazoa - 42028; Fungi - 9086; Plants - 32321; Viruses - 355; Other Eukaryotes - 15967 (source: NCBI BLink). protein_id AT1G07570.1p transcript_id AT1G07570.1 protein_id AT1G07570.1p transcript_id AT1G07570.1
At1g07570	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333168-2333210	AT1G07570.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn APK1, APK1A, F22G5.5, F22G5_5 gene APK1A function Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein serine/threonine kinase activity|GO:0004674|1450380|IDA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note APK1A; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase 1B (TAIR:AT2G28930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07570.2p transcript_id AT1G07570.2 protein_id AT1G07570.2p transcript_id AT1G07570.2
AT1G07570	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333168-2333210	AT1G07570.5 AT1G07570.5 CDS Protein kinase superfamily protein
AT1G07570	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332544	AT1G07570.4 AT1G07570.4 CDS Protein kinase superfamily protein
At1g07580	chr1:002334822	0.0	W/2334822-2334894	AT1G07580.1 [TAIR10] tRNA gene_syn 51945.TRNA-ALA-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ala (anticodon: AGC) transcript_id AT1G07580.1
At1g07590	chr1:002336649	0.0	C/2336649-2337899,2338128-2338481	AT1G07590.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F22G5.3, F22G5_3 go_component mitochondrion|GO:0005739||IEA go_process response to cadmium ion|GO:0046686|16502469|IEP product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PENTATRICOPEPTIDE REPEAT 596 (TAIR:AT1G80270.3); Has 14416 Blast hits to 6927 proteins in 166 species: Archae - 0; Bacteria - 10; Metazoa - 31; Fungi - 36; Plants - 14001; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink). protein_id AT1G07590.1p transcript_id AT1G07590.1 protein_id AT1G07590.1p transcript_id AT1G07590.1
At1g07600	chr1:002338904	0.0	C/2338904-2338985,2339266-2339321	AT1G07600.1 CDS metallothionein 1A [TAIR10] CDS gene_syn ARABIDOPSIS METALLOTHIONEIN 1, ATMT-2, ATMT-Q, ATMT1, F22G5.2, LIGHT STRESS-REGULATED 4, LSR4, METALLOTHIONEIN 1, METALLOTHIONEIN 2, METALLOTHIONEIN Q, MT-Q, MT1, MT1A, metallothionein 1A gene MT1A function metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage. go_component cellular_component|GO:0005575||ND go_process response to high light intensity|GO:0009644|11683875|IEP go_process response to copper ion|GO:0046688|8061521|IEP go_process response to copper ion|GO:0046688|8061521|IGI go_function copper ion binding|GO:0005507|9112777|IDA go_function metal ion binding|GO:0046872|7612924|TAS product metallothionein 1A note metallothionein 1A (MT1A); BEST Arabidopsis thaliana protein match is: metallothionein 1C (TAIR:AT1G07610.1); Has 370 Blast hits to 296 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 99; Fungi - 13; Plants - 182; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). protein_id AT1G07600.1p transcript_id AT1G07600.1 protein_id AT1G07600.1p transcript_id AT1G07600.1
At1g07610	chr1:002341603	0.0	W/2341603-2341658,2341784-2341865	AT1G07610.1 CDS metallothionein 1C [TAIR10] CDS gene_syn F22G5.40, MT1C, metallothionein 1C gene MT1C function one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance. go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process response to copper ion|GO:0046688|7565594|ISS go_function copper ion binding|GO:0005507|7565594|ISS product metallothionein 1C note metallothionein 1C (MT1C); FUNCTIONS IN: copper ion binding; INVOLVED IN: response to copper ion; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: metallothionein 1A (TAIR:AT1G07600.1); Has 443 Blast hits to 367 proteins in 121 species: Archae - 0; Bacteria - 4; Metazoa - 106; Fungi - 13; Plants - 241; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). protein_id AT1G07610.1p transcript_id AT1G07610.1 protein_id AT1G07610.1p transcript_id AT1G07610.1
At1g07615	chr1:002342277	0.0	C/2342277-2343365,2343459-2343521,2343610-2343692,2343855-2343963,2344063-2344200	AT1G07615.1 CDS GTP-binding protein Obg/CgtA [TAIR10] CDS go_component intracellular|GO:0005622||IEA go_function magnesium ion binding|GO:0000287||IEA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA product GTP-binding protein Obg/CgtA note GTP-binding protein Obg/CgtA; FUNCTIONS IN: magnesium ion binding, GTP binding, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP1/OBG family protein (TAIR:AT5G18570.1); Has 28571 Blast hits to 22114 proteins in 2954 species: Archae - 681; Bacteria - 18882; Metazoa - 872; Fungi - 715; Plants - 429; Viruses - 2; Other Eukaryotes - 6990 (source: NCBI BLink). protein_id AT1G07615.1p transcript_id AT1G07615.1 protein_id AT1G07615.1p transcript_id AT1G07615.1
At1g07620	chr1:002344556	0.0	C/2344556-2345067,2345146-2346162,2346245-2346374	AT1G07620.1 CDS GTP-binding protein Obg/CgtA [TAIR10] CDS gene_syn ATOBGM, F24B9.32, F24B9_32 gene ATOBGM go_function magnesium ion binding|GO:0000287||IEA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product GTP-binding protein Obg/CgtA note ATOBGM; FUNCTIONS IN: magnesium ion binding, GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT5G02390.1); Has 561 Blast hits to 511 proteins in 87 species: Archae - 0; Bacteria - 20; Metazoa - 47; Fungi - 31; Plants - 219; Viruses - 2; Other Eukaryotes - 242 (source: NCBI BLink). protein_id AT1G07620.1p transcript_id AT1G07620.1 protein_id AT1G07620.1p transcript_id AT1G07620.1
AT1G07620	chr1:002344556	0.0	C/2344556-2345067,2345146-2346162,2346245-2346374	AT1G07620.3 AT1G07620.3 CDS GTP-binding protein Obg/CgtA
AT1G07620	chr1:002344556	0.0	C/2344556-2345067,2345146-2346162,2346245-2346374	AT1G07620.4 AT1G07620.4 CDS GTP-binding protein Obg/CgtA
AT1G07620	chr1:002344556	0.0	C/2344556-2346162,2346245-2346374	AT1G07620.2 AT1G07620.2 CDS GTP-binding protein Obg/CgtA
At1g07630	chr1:002349189	0.0	W/2349189-2350682,2350772-2350885,2350973-2351237,2351322-2351437	AT1G07630.1 CDS pol-like 5 [TAIR10] CDS gene_syn F24B9.31, F24B9_31, PLL5, pol-like 5 gene PLL5 function Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves. go_component plasma membrane|GO:0005886|17317660|IDA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function catalytic activity|GO:0003824||IEA go_process leaf development|GO:0048366|16112663|IMP go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product pol-like 5 note pol-like 5 (PLL5); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, leaf development; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: poltergeist like 4 (TAIR:AT2G28890.1); Has 2889 Blast hits to 2855 proteins in 251 species: Archae - 0; Bacteria - 18; Metazoa - 486; Fungi - 220; Plants - 1762; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink). protein_id AT1G07630.1p transcript_id AT1G07630.1 protein_id AT1G07630.1p transcript_id AT1G07630.1
At1g07640	chr1:002354707	0.0	C/2354707-2355534	AT1G07640.1 CDS Dof-type zinc finger DNA-binding family protein [TAIR10] CDS gene_syn F24B9.30, F24B9_30, OBP2, ZINC FINGER PROTEIN OBP2 gene OBP2 function A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. go_component nucleus|GO:0005634|16581911|IDA go_process response to wounding|GO:0009611|16740150|IEP go_process response to insect|GO:0009625|16740150|IEP go_process response to jasmonic acid stimulus|GO:0009753|16740150|IEP go_process regulation of glucosinolate biosynthetic process|GO:0010439|16740150|IEP go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12475498|ISS product Dof-type zinc finger DNA-binding family protein note OBP2; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G28810.2); Has 1592 Blast hits to 1530 proteins in 87 species: Archae - 0; Bacteria - 4; Metazoa - 20; Fungi - 15; Plants - 1085; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink). protein_id AT1G07640.1p transcript_id AT1G07640.1 protein_id AT1G07640.1p transcript_id AT1G07640.1
At1g07640	chr1:002354707	0.0	C/2354707-2355699,2355796-2355798	AT1G07640.2 CDS Dof-type zinc finger DNA-binding family protein [TAIR10] CDS gene_syn F24B9.30, F24B9_30, OBP2, ZINC FINGER PROTEIN OBP2 gene OBP2 function A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. go_component nucleus|GO:0005634|16581911|IDA go_process response to wounding|GO:0009611|16740150|IEP go_process response to insect|GO:0009625|16740150|IEP go_process response to jasmonic acid stimulus|GO:0009753|16740150|IEP go_process regulation of glucosinolate biosynthetic process|GO:0010439|16740150|IEP go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12475498|ISS product Dof-type zinc finger DNA-binding family protein note OBP2; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G28810.2); Has 1614 Blast hits to 1549 proteins in 88 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 20; Plants - 1085; Viruses - 0; Other Eukaryotes - 477 (source: NCBI BLink). protein_id AT1G07640.2p transcript_id AT1G07640.2 protein_id AT1G07640.2p transcript_id AT1G07640.2
At1g07640	chr1:002354707	0.0	C/2354707-2355699,2355986-2356012	AT1G07640.3 CDS Dof-type zinc finger DNA-binding family protein [TAIR10] CDS gene_syn F24B9.30, F24B9_30, OBP2, ZINC FINGER PROTEIN OBP2 gene OBP2 function A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. go_component nucleus|GO:0005634|16581911|IDA go_process response to wounding|GO:0009611|16740150|IEP go_process response to insect|GO:0009625|16740150|IEP go_process response to jasmonic acid stimulus|GO:0009753|16740150|IEP go_process regulation of glucosinolate biosynthetic process|GO:0010439|16740150|IEP go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12475498|ISS product Dof-type zinc finger DNA-binding family protein note OBP2; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G28810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07640.3p transcript_id AT1G07640.3 protein_id AT1G07640.3p transcript_id AT1G07640.3
AT1G07650	chr1:002359817	0.0	C/2359817-2360176,2360270-2360420,2360512-2360752,2360841-2361051,2361161-2361279,2361382-2361522,2361617-2361682,2361761-2361812,2361904-2362298,2362415-2362473,2362630-2362665,2362752-2362820,2362905-2362970,2363039-2363110,2363214-2363285,2363365-2363436,2363541-2363612,2363691-2363762,2363858-2363929,2364093-2364164,2364296-2364367,2364454-2364522,2364620-2364691,2366005-2366185,2366321-2366423	AT1G07650.3 AT1G07650.3 CDS Leucine-rich repeat transmembrane protein kinase
AT1G07650	chr1:002359817	0.0	C/2359817-2360176,2360270-2360420,2360512-2360752,2360841-2361051,2361161-2361279,2361382-2361522,2361617-2361812,2361904-2362298,2362415-2362473,2362630-2362665,2362752-2362820,2362905-2362970,2363039-2363110,2363214-2363285,2363365-2363436,2363541-2363612,2363691-2363762,2363858-2363859	AT1G07650.4 AT1G07650.4 CDS Leucine-rich repeat transmembrane protein kinase
At1g07650	chr1:002359817	0.0	C/2359817-2360176,2360270-2360420,2360512-2360752,2360841-2361051,2361161-2361279,2361382-2361522,2361617-2361812,2361904-2362298,2362415-2362473,2362630-2362665,2362752-2362820,2362905-2362970,2363039-2363110,2363214-2363285,2363365-2363436,2363541-2363612,2363691-2363762,2363858-2363929,2364093-2364164,2364296-2364367,2364454-2364522,2364620-2364691,2366005-2366185,2366321-2366423	AT1G07650.1 CDS Leucine-rich repeat transmembrane protein kinase [TAIR10] CDS gene_syn F24B9.29, F24B9_29 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product Leucine-rich repeat transmembrane protein kinase note Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1); Has 190432 Blast hits to 138472 proteins in 4783 species: Archae - 131; Bacteria - 16225; Metazoa - 53388; Fungi - 11706; Plants - 85318; Viruses - 481; Other Eukaryotes - 23183 (source: NCBI BLink). protein_id AT1G07650.1p transcript_id AT1G07650.1 protein_id AT1G07650.1p transcript_id AT1G07650.1
At1g07650	chr1:002359817	0.0	C/2359817-2360176,2360270-2360420,2360512-2360752,2360841-2361051,2361161-2361279,2361382-2361522,2361617-2361812,2361904-2362298,2362415-2362473,2362630-2362665,2362752-2362820,2362905-2362970,2363039-2363110,2363214-2363285,2363365-2363436,2363541-2363612,2363691-2363762,2363858-2363929,2364093-2364164,2364296-2364367,2364454-2364522,2364620-2364709,2366005-2366185,2366321-2366423	AT1G07650.2 CDS Leucine-rich repeat transmembrane protein kinase [TAIR10] CDS gene_syn F24B9.29, F24B9_29 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product Leucine-rich repeat transmembrane protein kinase note Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1). protein_id AT1G07650.2p transcript_id AT1G07650.2 protein_id AT1G07650.2p transcript_id AT1G07650.2
At1g07645	chr1:002367612	0.0	C/2367612-2367734,2367829-2367991,2368222-2368349	AT1G07645.1 CDS dessication-induced 1VOC superfamily protein [TAIR10] CDS gene_syn ATDSI-1VOC, DSI-1VOC, dessication-induced 1VOC superfamily protein gene DSI-1VOC go_component endomembrane system|GO:0012505||IEA go_function catalytic activity|GO:0003824||ISS product dessication-induced 1VOC superfamily protein note dessication-induced 1VOC superfamily protein (DSI-1VOC); FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07645.1p transcript_id AT1G07645.1 protein_id AT1G07645.1p transcript_id AT1G07645.1
At1g07660	chr1:002369212	0.0	W/2369212-2369256,2369308-2369523	AT1G07660.2 CDS Histone superfamily protein [TAIR10] CDS gene_syn F24B9.25 go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3260 Blast hits to 3260 proteins in 518 species: Archae - 0; Bacteria - 0; Metazoa - 1876; Fungi - 357; Plants - 492; Viruses - 4; Other Eukaryotes - 531 (source: NCBI BLink). protein_id AT1G07660.2p transcript_id AT1G07660.2 protein_id AT1G07660.2p transcript_id AT1G07660.2
At1g07660	chr1:002369212	0.0	W/2369212-2369523	AT1G07660.1 CDS Histone superfamily protein [TAIR10] CDS gene_syn F24B9.25 go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1790; Fungi - 358; Plants - 490; Viruses - 6; Other Eukaryotes - 534 (source: NCBI BLink). protein_id AT1G07660.1p transcript_id AT1G07660.1 protein_id AT1G07660.1p transcript_id AT1G07660.1
At1g07670	chr1:002370305	0.0	C/2370305-2370889,2370968-2371196,2371291-2371400,2371482-2371859,2371947-2372228,2372383-2372504,2372596-2372662,2372784-2374196	AT1G07670.1 CDS endomembrane-type CA-ATPase 4 [TAIR10] CDS gene_syn ATECA4, ECA4, F24B9.24, F24B9_24, endomembrane-type CA-ATPase 4 gene ECA4 go_component plasma membrane|GO:0005886|17317660|IDA go_process ATP biosynthetic process|GO:0006754||IEA go_process cation transport|GO:0006812||IEA go_process calcium ion transport|GO:0006816||IEA go_process metabolic process|GO:0008152||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS go_function calcium-transporting ATPase activity|GO:0005388||ISS product endomembrane-type CA-ATPase 4 note endomembrane-type CA-ATPase 4 (ECA4); FUNCTIONS IN: calcium-transporting ATPase activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: guard cell, callus, cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ER-type Ca2+-ATPase 1 (TAIR:AT1G07810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G07670.1p transcript_id AT1G07670.1 protein_id AT1G07670.1p transcript_id AT1G07670.1
AT1G07670	chr1:002370305	0.0	C/2370305-2370889,2370968-2371196,2371291-2371400,2371482-2371859,2371947-2372228,2372383-2372504,2372596-2372662,2372784-2374196	AT1G07670.2 AT1G07670.2 CDS endomembrane-type CA-ATPase 4
At1g07680	chr1:002376062	0.0	W/2376062-2376131,2376268-2376543,2376881-2376993	AT1G07680.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F24B9.23, F24B9_23 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23903.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07680.1p transcript_id AT1G07680.1 protein_id AT1G07680.1p transcript_id AT1G07680.1
AT1G07690	chr1:002377983	0.0	W/2377983-2378170,2378267-2378421,2378543-2378587,2378678-2378842,2378933-2379000	AT1G07690.3 AT1G07690.3 CDS transmembrane protein, putative
AT1G07690	chr1:002377983	0.0	W/2377983-2378170,2378267-2378433,2378543-2378587,2378678-2378842,2378933-2379000	AT1G07690.2 AT1G07690.2 CDS transmembrane protein, putative
At1g07690	chr1:002378076	0.0	W/2378076-2378170,2378267-2378421,2378543-2378587,2378678-2378854,2378933-2379000	AT1G07690.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F24B9.22, F24B9_22 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Orthoreovirus membrane fusion p10 (InterPro:IPR009854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G07690.1p transcript_id AT1G07690.1 protein_id AT1G07690.1p transcript_id AT1G07690.1
AT1G07690	chr1:002378076	0.0	W/2378076-2378170,2378267-2378433,2378543-2378587,2378678-2378842,2378933-2379000	AT1G07690.5 AT1G07690.5 CDS transmembrane protein, putative
AT1G07690	chr1:002378076	0.0	W/2378076-2378170,2378267-2378433,2378543-2378587,2378678-2378854,2378933-2379000	AT1G07690.4 AT1G07690.4 CDS transmembrane protein, putative
At1g07700	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380924,2381014-2381127	AT1G07700.1 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn F24B9.21, F24B9_21 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_process cell redox homeostasis|GO:0045454||IEA product Thioredoxin superfamily protein note Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1); Has 1987 Blast hits to 1985 proteins in 408 species: Archae - 6; Bacteria - 244; Metazoa - 551; Fungi - 299; Plants - 574; Viruses - 3; Other Eukaryotes - 310 (source: NCBI BLink). protein_id AT1G07700.1p transcript_id AT1G07700.1 protein_id AT1G07700.1p transcript_id AT1G07700.1
At1g07700	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380924,2381014-2381127	AT1G07700.2 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn F24B9.21, F24B9_21 go_component chloroplast|GO:0009507|18431481|IDA go_process cell redox homeostasis|GO:0045454||IEA product Thioredoxin superfamily protein note Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07700.2p transcript_id AT1G07700.2 protein_id AT1G07700.2p transcript_id AT1G07700.2
AT1G07700	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380924,2381014-2381127	AT1G07700.4 AT1G07700.4 CDS Thioredoxin superfamily protein
At1g07700	chr1:002380297	0.0	W/2380297-2380782,2380871-2380924,2381014-2381127	AT1G07700.3 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn F24B9.21, F24B9_21 go_component chloroplast|GO:0009507|18431481|IDA go_process cell redox homeostasis|GO:0045454||IEA product Thioredoxin superfamily protein note Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07700.3p transcript_id AT1G07700.3 protein_id AT1G07700.3p transcript_id AT1G07700.3
At1g07705	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385278,2385570-2385708,2385788-2385856	AT1G07705.2 CDS NOT2 / NOT3 / NOT5 family [TAIR10] CDS go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_process regulation of transcription|GO:0045449||IEA go_function transcription regulator activity|GO:0030528||IEA go_function transcription regulator activity|GO:0030528||ISS product NOT2 / NOT3 / NOT5 family note NOT2 / NOT3 / NOT5 family; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1); Has 3259 Blast hits to 2610 proteins in 429 species: Archae - 0; Bacteria - 983; Metazoa - 821; Fungi - 441; Plants - 185; Viruses - 8; Other Eukaryotes - 821 (source: NCBI BLink). protein_id AT1G07705.2p transcript_id AT1G07705.2 protein_id AT1G07705.2p transcript_id AT1G07705.2
AT1G07705	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385278,2385570-2385708,2385788-2385856	AT1G07705.3 AT1G07705.3 CDS NOT2 / NOT3 / NOT5 family
AT1G07705	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385278,2385570-2385708,2385788-2385856	AT1G07705.4 AT1G07705.4 CDS NOT2 / NOT3 / NOT5 family
At1g07705	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385282	AT1G07705.1 CDS NOT2 / NOT3 / NOT5 family [TAIR10] CDS go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_process regulation of transcription|GO:0045449||IEA go_function transcription regulator activity|GO:0030528||IEA go_function transcription regulator activity|GO:0030528||ISS product NOT2 / NOT3 / NOT5 family note NOT2 / NOT3 / NOT5 family; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1); Has 2858 Blast hits to 2245 proteins in 417 species: Archae - 0; Bacteria - 989; Metazoa - 670; Fungi - 343; Plants - 147; Viruses - 8; Other Eukaryotes - 701 (source: NCBI BLink). protein_id AT1G07705.1p transcript_id AT1G07705.1 protein_id AT1G07705.1p transcript_id AT1G07705.1
At1g07702	chr1:002382251	0.0	C/2382251-2382331	AT1G07702.1 [TAIR10] snoRNA gene_syn 51805.SNORNA00001 go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G07702.1
At1g07710	chr1:002386275	0.0	C/2386275-2387563,2387644-2387986	AT1G07710.1 CDS Ankyrin repeat family protein [TAIR10] CDS gene_syn F24B9.19, F24B9_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Ankyrin repeat family protein note Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G60070.1); Has 71061 Blast hits to 30444 proteins in 1217 species: Archae - 72; Bacteria - 7320; Metazoa - 31750; Fungi - 7301; Plants - 5738; Viruses - 586; Other Eukaryotes - 18294 (source: NCBI BLink). protein_id AT1G07710.1p transcript_id AT1G07710.1 protein_id AT1G07710.1p transcript_id AT1G07710.1
AT1G07710	chr1:002386275	0.0	C/2386275-2387563,2387644-2387986	AT1G07710.2 AT1G07710.2 CDS Ankyrin repeat family protein
At1g07720	chr1:002390970	0.0	C/2390970-2392406	AT1G07720.1 CDS 3-ketoacyl-CoA synthase 3 [TAIR10] CDS gene_syn 3-ketoacyl-CoA synthase 3, F24B9.18, F24B9_18, KCS3 gene KCS3 function Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). go_function catalytic activity|GO:0003824||IEA go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_component endoplasmic reticulum|GO:0005783|18465198|IDA go_process response to osmotic stress|GO:0006970|18465198|IEP go_process response to cold|GO:0009409|18465198|IEP go_process response to light stimulus|GO:0009416|18465198|IEP go_function acyltransferase activity|GO:0008415||ISS product 3-ketoacyl-CoA synthase 3 note 3-ketoacyl-CoA synthase 3 (KCS3); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: response to cold, response to light stimulus, response to osmotic stress; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 12 (TAIR:AT2G28630.1); Has 2897 Blast hits to 2863 proteins in 795 species: Archae - 0; Bacteria - 1421; Metazoa - 0; Fungi - 2; Plants - 1311; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink). protein_id AT1G07720.1p transcript_id AT1G07720.1 protein_id AT1G07720.1p transcript_id AT1G07720.1
AT1G07720	chr1:002390970	0.0	C/2390970-2392535	AT1G07720.2 AT1G07720.2 CDS 3-ketoacyl-CoA synthase 3
At1g07725	chr1:002395249	0.0	C/2395249-2397096	AT1G07725.1 CDS exocyst subunit exo70 family protein H6 [TAIR10] CDS gene_syn ATEXO70H6, EXO70H6, exocyst subunit exo70 family protein H6 gene EXO70H6 function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. go_component exocyst|GO:0000145||IEA go_process exocytosis|GO:0006887||IEA go_component exocyst|GO:0000145||ISS go_process vesicle docking involved in exocytosis|GO:0006904||ISS product exocyst subunit exo70 family protein H6 note exocyst subunit exo70 family protein H6 (EXO70H6); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H5 (TAIR:AT2G28640.1); Has 846 Blast hits to 838 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 47; Plants - 645; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G07725.1p transcript_id AT1G07725.1 protein_id AT1G07725.1p transcript_id AT1G07725.1
At1g07728	chr1:002395451	0.0	W/2395451-2397341	AT1G07728.2 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G07725 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G07728.2
At1g07728	chr1:002395461	0.0	W/2395461-2396434,2396529-2397345	AT1G07728.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G07725 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G07728.1
At1g07730	chr1:002397527	0.0	C/2397527-2398696	AT1G07730.2 CDS Disease resistance-responsive (dirigent-like protein) family protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Disease resistance-responsive (dirigent-like protein) family protein note Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT2G28670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07730.2p transcript_id AT1G07730.2 protein_id AT1G07730.2p transcript_id AT1G07730.2
At1g07740	chr1:002399117	0.0	C/2399117-2400496	AT1G07740.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn AT1G07730, F24B9.15, F24B9_15 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT5G16420.1); Has 40211 Blast hits to 12438 proteins in 276 species: Archae - 2; Bacteria - 44; Metazoa - 539; Fungi - 492; Plants - 37971; Viruses - 0; Other Eukaryotes - 1163 (source: NCBI BLink). protein_id AT1G07740.1p transcript_id AT1G07740.1 protein_id AT1G07740.1p transcript_id AT1G07740.1
At1g07745	chr1:002400797	0.0	C/2400797-2400853,2400948-2401103,2401188-2401258,2401356-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402458,2402755-2402842	AT1G07745.1 CDS homolog of RAD51 D [TAIR10] CDS gene_syn ATRAD51D, F24B9.14, F24B9_14, RAD51D, SSN1, SUPPRESOR OF SNI1, homolog of RAD51 D gene RAD51D function Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination. go_function DNA binding|GO:0003677||IEA go_function ATP binding|GO:0005524||IEA go_function DNA-dependent ATPase activity|GO:0008094||IEA go_process regulation of response to biotic stimulus|GO:0002831|17360504|IMP go_process DNA repair|GO:0006281|17360504|IMP go_process DNA repair|GO:0006281||ISS go_process somatic cell DNA recombination|GO:0016444|17360504|IMP go_function DNA binding|GO:0003677||ISS product homolog of RAD51 D note homolog of RAD51 D (RAD51D); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, somatic cell DNA recombination, regulation of response to biotic stimulus; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT2G28560.1); Has 4147 Blast hits to 4147 proteins in 1269 species: Archae - 448; Bacteria - 1641; Metazoa - 721; Fungi - 410; Plants - 391; Viruses - 2; Other Eukaryotes - 534 (source: NCBI BLink). protein_id AT1G07745.1p transcript_id AT1G07745.1 protein_id AT1G07745.1p transcript_id AT1G07745.1
At1g07745	chr1:002400797	0.0	C/2400797-2400853,2400948-2401103,2401188-2401258,2401356-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402492	AT1G07745.2 CDS homolog of RAD51 D [TAIR10] CDS gene_syn ATRAD51D, F24B9.14, F24B9_14, RAD51D, SSN1, SUPPRESOR OF SNI1, homolog of RAD51 D gene RAD51D function Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination. go_component endomembrane system|GO:0012505||IEA go_function nucleotide binding|GO:0000166||IEA go_function DNA binding|GO:0003677||IEA go_function ATP binding|GO:0005524||IEA go_function DNA-dependent ATPase activity|GO:0008094||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_process regulation of response to biotic stimulus|GO:0002831|17360504|IMP go_process DNA repair|GO:0006281|17360504|IMP go_process DNA repair|GO:0006281||ISS go_process somatic cell DNA recombination|GO:0016444|17360504|IMP go_function DNA binding|GO:0003677||ISS product homolog of RAD51 D note homolog of RAD51 D (RAD51D); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA repair, somatic cell DNA recombination, regulation of response to biotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT2G28560.1); Has 4124 Blast hits to 4124 proteins in 1258 species: Archae - 446; Bacteria - 1629; Metazoa - 719; Fungi - 404; Plants - 385; Viruses - 2; Other Eukaryotes - 539 (source: NCBI BLink). protein_id AT1G07745.2p transcript_id AT1G07745.2 protein_id AT1G07745.2p transcript_id AT1G07745.2
AT1G07745	chr1:002401257	0.0	C/2401257-2401258,2401344-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402458,2402755-2402842	AT1G07745.4 AT1G07745.4 CDS homolog of RAD51 D
AT1G07745	chr1:002401257	0.0	C/2401257-2401258,2401344-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402458,2402755-2402842	AT1G07745.5 AT1G07745.5 CDS homolog of RAD51 D
AT1G07745	chr1:002401257	0.0	C/2401257-2401258,2401344-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402492	AT1G07745.3 AT1G07745.3 CDS homolog of RAD51 D
At1g07747	chr1:002403558	0.0	W/2403558-2403845	AT1G07747.1 CDS Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [TAIR10] CDS function Encodes a Protease inhibitor/seed storage/LTP family protein go_component endomembrane system|GO:0012505||IEA go_process lipid transport|GO:0006869||IEA product Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein note Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G43667.1); Has 285 Blast hits to 284 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 285; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07747.1p transcript_id AT1G07747.1 protein_id AT1G07747.1p transcript_id AT1G07747.1
At1g07750	chr1:002404300	0.0	C/2404300-2404453,2404542-2405262,2405668-2405863	AT1G07750.1 CDS RmlC-like cupins superfamily protein [TAIR10] CDS gene_syn F24B9.13, F24B9_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function copper ion binding|GO:0005507|20018591|IDA go_function zinc ion binding|GO:0008270|20018591|IDA go_function nutrient reservoir activity|GO:0045735||ISS product RmlC-like cupins superfamily protein note RmlC-like cupins superfamily protein; FUNCTIONS IN: copper ion binding, zinc ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G28680.1); Has 920 Blast hits to 832 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 914; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G07750.1p transcript_id AT1G07750.1 protein_id AT1G07750.1p transcript_id AT1G07750.1
At1g07760	chr1:002406834	0.0	C/2406834-2406905	AT1G07760.1 [TAIR10] tRNA gene_syn 51805.TRNA-HIS-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-His (anticodon: GTG) transcript_id AT1G07760.1
At1g07770	chr1:002408413	0.0	C/2408413-2408511,2408681-2408841,2408933-2409065	AT1G07770.1 CDS ribosomal protein S15A [TAIR10] CDS gene_syn CYTOPLASMIC RIBOSOMAL PROTEIN S15A, F24B9.12, F24B9_12, RPS15A, ribosomal protein S15A gene RPS15A function Encodes cytoplasmic ribosomal protein S15a. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component cytosolic ribosome|GO:0022626|7972526|ISS go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS go_process translation|GO:0006412|11598216|ISS go_function structural constituent of ribosome|GO:0003735|11598216|ISS product ribosomal protein S15A note ribosomal protein S15A (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 3677 Blast hits to 3677 proteins in 1417 species: Archae - 277; Bacteria - 1997; Metazoa - 434; Fungi - 223; Plants - 257; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink). protein_id AT1G07770.1p transcript_id AT1G07770.1 protein_id AT1G07770.1p transcript_id AT1G07770.1
At1g07770	chr1:002408413	0.0	C/2408413-2408511,2408681-2408841,2408933-2409065	AT1G07770.2 CDS ribosomal protein S15A [TAIR10] CDS gene_syn CYTOPLASMIC RIBOSOMAL PROTEIN S15A, F24B9.12, F24B9_12, RPS15A, ribosomal protein S15A gene RPS15A function Encodes cytoplasmic ribosomal protein S15a. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component cytosolic ribosome|GO:0022626|7972526|ISS go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS go_process translation|GO:0006412|11598216|ISS go_function structural constituent of ribosome|GO:0003735|11598216|ISS product ribosomal protein S15A note ribosomal protein S15A (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07770.2p transcript_id AT1G07770.2 protein_id AT1G07770.2p transcript_id AT1G07770.2
AT1G07770	chr1:002408413	0.0	C/2408413-2408511,2408681-2408841,2408933-2409065	AT1G07770.3 AT1G07770.3 CDS ribosomal protein S15A
AT1G07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411217	AT1G07780.7 AT1G07780.7 CDS phosphoribosylanthranilate isomerase 1
AT1G07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.10 AT1G07780.10 CDS phosphoribosylanthranilate isomerase 1
AT1G07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.12 AT1G07780.12 CDS phosphoribosylanthranilate isomerase 1
AT1G07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.13 AT1G07780.13 CDS phosphoribosylanthranilate isomerase 1
At1g07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.1 CDS phosphoribosylanthranilate isomerase 1 [TAIR10] CDS gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, TRANSIENT RECEPTOR POTENTIAL 6, TRP6, phosphoribosylanthranilate isomerase 1 gene PAI1 function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. go_component chloroplast|GO:0009507|7890741|IDA go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP product phosphoribosylanthranilate isomerase 1 note phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1); Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168; Bacteria - 3853; Metazoa - 4; Fungi - 235; Plants - 77; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink). protein_id AT1G07780.1p transcript_id AT1G07780.1 protein_id AT1G07780.1p transcript_id AT1G07780.1
At1g07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.2 CDS phosphoribosylanthranilate isomerase 1 [TAIR10] CDS gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, TRANSIENT RECEPTOR POTENTIAL 6, TRP6, phosphoribosylanthranilate isomerase 1 gene PAI1 function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. go_component chloroplast|GO:0009507|7890741|IDA go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP product phosphoribosylanthranilate isomerase 1 note phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1); Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168; Bacteria - 3853; Metazoa - 4; Fungi - 235; Plants - 77; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink). protein_id AT1G07780.2p transcript_id AT1G07780.2 protein_id AT1G07780.2p transcript_id AT1G07780.2
At1g07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.3 CDS phosphoribosylanthranilate isomerase 1 [TAIR10] CDS gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, TRANSIENT RECEPTOR POTENTIAL 6, TRP6, phosphoribosylanthranilate isomerase 1 gene PAI1 function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. go_component chloroplast|GO:0009507|7890741|IDA go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP product phosphoribosylanthranilate isomerase 1 note phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1); Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168; Bacteria - 3853; Metazoa - 4; Fungi - 235; Plants - 77; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink). protein_id AT1G07780.3p transcript_id AT1G07780.3 protein_id AT1G07780.3p transcript_id AT1G07780.3
At1g07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.5 CDS phosphoribosylanthranilate isomerase 1 [TAIR10] CDS gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, TRANSIENT RECEPTOR POTENTIAL 6, TRP6, phosphoribosylanthranilate isomerase 1 gene PAI1 function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. go_component chloroplast|GO:0009507|7890741|IDA go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP product phosphoribosylanthranilate isomerase 1 note phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1). protein_id AT1G07780.5p transcript_id AT1G07780.5 protein_id AT1G07780.5p transcript_id AT1G07780.5
AT1G07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.9 AT1G07780.9 CDS phosphoribosylanthranilate isomerase 1
AT1G07780	chr1:002410563	0.0	C/2410563-2410602,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.11 AT1G07780.11 CDS phosphoribosylanthranilate isomerase 1
At1g07780	chr1:002410563	0.0	C/2410563-2410602,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.4 CDS phosphoribosylanthranilate isomerase 1 [TAIR10] CDS gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, TRANSIENT RECEPTOR POTENTIAL 6, TRP6, phosphoribosylanthranilate isomerase 1 gene PAI1 function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family. go_component chloroplast|GO:0009507|7890741|IDA go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP product phosphoribosylanthranilate isomerase 1 note phosphoribosylanthranilate isomerase 1 (PAI1); CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G07780.4p transcript_id AT1G07780.4 protein_id AT1G07780.4p transcript_id AT1G07780.4
AT1G07780	chr1:002410657	0.0	C/2410657-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.6 AT1G07780.6 CDS phosphoribosylanthranilate isomerase 1
AT1G07780	chr1:002410657	0.0	C/2410657-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.8 AT1G07780.8 CDS phosphoribosylanthranilate isomerase 1
At1g07790	chr1:002413049	0.0	W/2413049-2413495	AT1G07790.1 CDS Histone superfamily protein [TAIR10] CDS gene_syn F24B9.10, F24B9_10, HTB1 gene HTB1 function Encodes a histone 2B (H2B) protein. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note HTB1; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 3418 Blast hits to 3391 proteins in 380 species: Archae - 0; Bacteria - 96; Metazoa - 2240; Fungi - 204; Plants - 476; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink). protein_id AT1G07790.1p transcript_id AT1G07790.1 protein_id AT1G07790.1p transcript_id AT1G07790.1
At1g07795	chr1:002414438	0.0	W/2414438-2414794	AT1G07795.1 CDS forkhead box protein G1, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07795.1p transcript_id AT1G07795.1 protein_id AT1G07795.1p transcript_id AT1G07795.1
At1g07800	chr1:002415041	0.0	W/2415041-2415970	AT1G07800.1 [TAIR10] mRNA
At1g07800	chr1:002415041	0.0	W/2415041-2415970	AT1G07800 [TAIR10] TE pseudo gene_syn F24B9.35 note Transposable element gene, pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}
At1g07810	chr1:002416681	0.0	W/2416681-2418093,2418215-2418281,2418374-2418495,2418647-2418928,2419010-2419387,2419467-2419576,2419677-2419905,2419988-2420572	AT1G07810.1 CDS ER-type Ca2+-ATPase 1 [TAIR10] CDS gene_syn ACA3, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ATECA1, ECA1, ER-TYPE CA2+-ATPASE, ER-type Ca2+-ATPase 1, F24B9.9, F24B9_9 gene ECA1 function Encodes an ER-type Ca2+-pumping ATPase. go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_component endoplasmic reticulum|GO:0005783|9238019|IDA go_component endoplasmic reticulum membrane|GO:0005789|9238019|IDA go_process calcium ion transport|GO:0006816|9238019|IGI go_process manganese ion transport|GO:0006828|9238019|IGI go_process response to manganese ion|GO:0010042|12226493|IMP go_process response to manganese ion|GO:0010042|9238019|IMP go_process cellular manganese ion homeostasis|GO:0030026|9238019|IGI go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS go_function calcium-transporting ATPase activity|GO:0005388|9238019|IDA go_function calcium-transporting ATPase activity|GO:0005388|9238019|IGI go_function calcium-transporting ATPase activity|GO:0005388||ISS product ER-type Ca2+-ATPase 1 note ER-type Ca2+-ATPase 1 (ECA1); FUNCTIONS IN: calcium-transporting ATPase activity; INVOLVED IN: manganese ion transport, response to cadmium ion, cellular manganese ion homeostasis, calcium ion transport, response to manganese ion; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: guard cell, callus, cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: endomembrane-type CA-ATPase 4 (TAIR:AT1G07670.1); Has 52947 Blast hits to 34771 proteins in 3297 species: Archae - 1117; Bacteria - 37251; Metazoa - 4506; Fungi - 2912; Plants - 2416; Viruses - 3; Other Eukaryotes - 4742 (source: NCBI BLink). protein_id AT1G07810.1p transcript_id AT1G07810.1 protein_id AT1G07810.1p transcript_id AT1G07810.1
At1g07820	chr1:002421435	0.0	C/2421435-2421746	AT1G07820.1 CDS Histone superfamily protein [TAIR10] CDS gene_syn F24B9.8 go_component nucleosome|GO:0000786||IEA go_component nucleus|GO:0005634||IEA go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone H4, conserved site (InterPro:IPR019809), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3184 Blast hits to 3184 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1794; Fungi - 359; Plants - 490; Viruses - 6; Other Eukaryotes - 535 (source: NCBI BLink). protein_id AT1G07820.1p transcript_id AT1G07820.1 protein_id AT1G07820.1p transcript_id AT1G07820.1
At1g07820	chr1:002421435	0.0	C/2421435-2421746	AT1G07820.2 CDS Histone superfamily protein [TAIR10] CDS gene_syn F24B9.8 go_component nucleosome|GO:0000786||IEA go_component nucleus|GO:0005634||IEA go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1790; Fungi - 358; Plants - 490; Viruses - 6; Other Eukaryotes - 534 (source: NCBI BLink). protein_id AT1G07820.2p transcript_id AT1G07820.2 protein_id AT1G07820.2p transcript_id AT1G07820.2
At1g07830	chr1:002422549	0.0	W/2422549-2422717,2422949-2423106,2423285-2423392	AT1G07830.1 CDS ribosomal protein L29 family protein [TAIR10] CDS gene_syn F24B9.7, F24B9_7 go_component intracellular|GO:0005622||IEA go_component mitochondrion|GO:0005739||IEA go_component mitochondrial ribosome|GO:0005761||IEA go_component ribosome|GO:0005840||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product ribosomal protein L29 family protein note ribosomal protein L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, mitochondrial ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L47, mitochondrial (InterPro:IPR010729), Ribosomal protein L29 (InterPro:IPR001854); Has 365 Blast hits to 365 proteins in 201 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 146; Plants - 47; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). protein_id AT1G07830.1p transcript_id AT1G07830.1 protein_id AT1G07830.1p transcript_id AT1G07830.1
At1g07840	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426103,2426192-2426306,2426414-2426425	AT1G07840.1 CDS Sas10/Utp3/C1D family [TAIR10] CDS gene_syn F24B9.6, F24B9_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Sas10/Utp3/C1D family note Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 652 Blast hits to 650 proteins in 205 species: Archae - 2; Bacteria - 28; Metazoa - 259; Fungi - 134; Plants - 81; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink). protein_id AT1G07840.1p transcript_id AT1G07840.1 protein_id AT1G07840.1p transcript_id AT1G07840.1
At1g07840	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426103,2426192-2426306,2426414-2426425	AT1G07840.2 CDS Sas10/Utp3/C1D family [TAIR10] CDS gene_syn F24B9.6, F24B9_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Sas10/Utp3/C1D family note Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07840.2p transcript_id AT1G07840.2 protein_id AT1G07840.2p transcript_id AT1G07840.2
At1g07840	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426131	AT1G07840.3 CDS Sas10/Utp3/C1D family [TAIR10] CDS gene_syn F24B9.6, F24B9_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Sas10/Utp3/C1D family note Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07840.3p transcript_id AT1G07840.3 protein_id AT1G07840.3p transcript_id AT1G07840.3
At1g07850	chr1:002426745	0.0	W/2426745-2427301,2427377-2427779,2427893-2428438,2428600-2428719	AT1G07850.1 CDS transferring glycosyl group transferase (DUF604) [TAIR10] CDS gene_syn F24B9.5, F24B9_5 go_component chloroplast|GO:0009507||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Protein of unknown function (DUF604) note Protein of unknown function (DUF604); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 101 Blast hits to 95 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 16; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07850.1p transcript_id AT1G07850.1 protein_id AT1G07850.1p transcript_id AT1G07850.1
At1g07860	chr1:002428942	0.0	C/2428942-2429183,2429266-2429431	AT1G07860.1 CDS Serine/Threonine-kinase RLCKVII protein, putative [TAIR10] CDS gene_syn F24B9.36, F24B9_36 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G07870.2); Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07860.1p transcript_id AT1G07860.1 protein_id AT1G07860.1p transcript_id AT1G07860.1
At1g07870	chr1:002428942	0.0	C/2428942-2429183,2429266-2429378,2429943-2430241,2430321-2430712,2430818-2431007,2431105-2431343,2431702-2431843	AT1G07870.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F24B9.4, F24B9_4 go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_process response to salt stress|GO:0009651|11351099|IEP go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G28590.1). protein_id AT1G07870.2p transcript_id AT1G07870.2 protein_id AT1G07870.2p transcript_id AT1G07870.2
At1g07870	chr1:002429933	0.0	C/2429933-2430241,2430321-2430712,2430818-2431007,2431105-2431343,2431702-2431843	AT1G07870.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F24B9.4, F24B9_4 go_component plasma membrane|GO:0005886|17644812|IDA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_process response to salt stress|GO:0009651|11351099|IEP go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G28590.1); Has 114203 Blast hits to 112857 proteins in 4234 species: Archae - 113; Bacteria - 13468; Metazoa - 41680; Fungi - 9329; Plants - 32811; Viruses - 406; Other Eukaryotes - 16396 (source: NCBI BLink). protein_id AT1G07870.1p transcript_id AT1G07870.1 protein_id AT1G07870.1p transcript_id AT1G07870.1
At1g07880	chr1:002434193	0.0	C/2434193-2434356,2434438-2434621,2434727-2435059,2435152-2435289,2435359-2435488,2435570-2435712	AT1G07880.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn ATMPK13, F24B9.3, F24B9_3 gene ATMPK13 function member of MAP Kinase go_process signal transduction|GO:0007165|12119167|IC go_function MAP kinase activity|GO:0004707|11544109|ISS go_function MAP kinase activity|GO:0004707|12119167|ISS go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note ATMPK13; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), JNK MAP kinase (InterPro:IPR008351), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07880.2p transcript_id AT1G07880.2 protein_id AT1G07880.2p transcript_id AT1G07880.2
At1g07880	chr1:002434706	0.0	C/2434706-2435059,2435152-2435289,2435359-2435488,2435570-2435712	AT1G07880.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn ATMPK13, F24B9.3, F24B9_3 gene ATMPK13 function member of MAP Kinase go_process signal transduction|GO:0007165|12119167|IC go_function MAP kinase activity|GO:0004707|11544109|ISS go_function MAP kinase activity|GO:0004707|12119167|ISS go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note ATMPK13; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 5 (TAIR:AT4G11330.1); Has 121340 Blast hits to 120172 proteins in 4531 species: Archae - 84; Bacteria - 12928; Metazoa - 46067; Fungi - 12050; Plants - 29427; Viruses - 570; Other Eukaryotes - 20214 (source: NCBI BLink). protein_id AT1G07880.1p transcript_id AT1G07880.1 protein_id AT1G07880.1p transcript_id AT1G07880.1
At1g07885	chr1:002436663	0.0	C/2436663-2436827	AT1G07885.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G07885.1p transcript_id AT1G07885.1 protein_id AT1G07885.1p transcript_id AT1G07885.1
AT1G07885	chr1:002436663	0.0	C/2436663-2436827	AT1G07885.2 AT1G07885.2 CDS hypothetical protein
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.1 CDS ascorbate peroxidase 1 [TAIR10] CDS gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX01, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6 gene APX1 function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosol|GO:0005829|8422923|TAS go_process response to reactive oxygen species|GO:0000302|15608336|IMP go_process response to heat|GO:0009408|9808745|IEP go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process hydrogen peroxide catabolic process|GO:0042744|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS go_function L-ascorbate peroxidase activity|GO:0016688||ISS product ascorbate peroxidase 1 note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane, chloroplast stroma; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75; Bacteria - 2912; Metazoa - 21; Fungi - 794; Plants - 3291; Viruses - 0; Other Eukaryotes - 1718 (source: NCBI BLink). protein_id AT1G07890.1p transcript_id AT1G07890.1 protein_id AT1G07890.1p transcript_id AT1G07890.1
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.2 CDS ascorbate peroxidase 1 [TAIR10] CDS gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX01, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6 gene APX1 function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosol|GO:0005829|8422923|TAS go_process response to reactive oxygen species|GO:0000302|15608336|IMP go_process response to heat|GO:0009408|9808745|IEP go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process hydrogen peroxide catabolic process|GO:0042744|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS go_function L-ascorbate peroxidase activity|GO:0016688||ISS product ascorbate peroxidase 1 note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 8837 Blast hits to 8083 proteins in 1272 species: Archae - 75; Bacteria - 2918; Metazoa - 21; Fungi - 814; Plants - 3291; Viruses - 0; Other Eukaryotes - 1718 (source: NCBI BLink). protein_id AT1G07890.2p transcript_id AT1G07890.2 protein_id AT1G07890.2p transcript_id AT1G07890.2
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.3 CDS ascorbate peroxidase 1 [TAIR10] CDS gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX01, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6 gene APX1 function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosol|GO:0005829|8422923|TAS go_process response to reactive oxygen species|GO:0000302|15608336|IMP go_process response to heat|GO:0009408|9808745|IEP go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process hydrogen peroxide catabolic process|GO:0042744|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS go_function L-ascorbate peroxidase activity|GO:0016688||ISS product ascorbate peroxidase 1 note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07890.3p transcript_id AT1G07890.3 protein_id AT1G07890.3p transcript_id AT1G07890.3
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.4 CDS ascorbate peroxidase 1 [TAIR10] CDS gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX01, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6 gene APX1 function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosol|GO:0005829|8422923|TAS go_process response to reactive oxygen species|GO:0000302|15608336|IMP go_process response to heat|GO:0009408|9808745|IEP go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process hydrogen peroxide catabolic process|GO:0042744|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS go_function L-ascorbate peroxidase activity|GO:0016688||ISS product ascorbate peroxidase 1 note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75; Bacteria - 2912; Metazoa - 21; Fungi - 794; Plants - 3291; Viruses - 0; Other Eukaryotes - 1718 (source: NCBI BLink). protein_id AT1G07890.4p transcript_id AT1G07890.4 protein_id AT1G07890.4p transcript_id AT1G07890.4
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.5 CDS ascorbate peroxidase 1 [TAIR10] CDS gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX01, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6 gene APX1 function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosol|GO:0005829|8422923|TAS go_process response to reactive oxygen species|GO:0000302|15608336|IMP go_process response to heat|GO:0009408|9808745|IEP go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process hydrogen peroxide catabolic process|GO:0042744|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS go_function L-ascorbate peroxidase activity|GO:0016688||ISS product ascorbate peroxidase 1 note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75; Bacteria - 2912; Metazoa - 21; Fungi - 794; Plants - 3291; Viruses - 0; Other Eukaryotes - 1718 (source: NCBI BLink). protein_id AT1G07890.5p transcript_id AT1G07890.5 protein_id AT1G07890.5p transcript_id AT1G07890.5
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.7 CDS ascorbate peroxidase 1 [TAIR10] CDS gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX01, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6 gene APX1 function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_component cytosol|GO:0005829|8422923|TAS go_process response to reactive oxygen species|GO:0000302|15608336|IMP go_process response to heat|GO:0009408|9808745|IEP go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process hydrogen peroxide catabolic process|GO:0042744|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS go_function L-ascorbate peroxidase activity|GO:0016688||ISS product ascorbate peroxidase 1 note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to reactive oxygen species, response to salt stress, response to heat, hydrogen peroxide catabolic process, embryo development ending in seed dormancy; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75; Bacteria - 2912; Metazoa - 21; Fungi - 794; Plants - 3291; Viruses - 0; Other Eukaryotes - 1718 (source: NCBI BLink). protein_id AT1G07890.7p transcript_id AT1G07890.7 protein_id AT1G07890.7p transcript_id AT1G07890.7
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.8 CDS ascorbate peroxidase 1 [TAIR10] CDS gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX01, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6 gene APX1 function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_component cytosol|GO:0005829|8422923|TAS go_process response to reactive oxygen species|GO:0000302|15608336|IMP go_process response to heat|GO:0009408|9808745|IEP go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process hydrogen peroxide catabolic process|GO:0042744|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS go_function L-ascorbate peroxidase activity|GO:0016688||ISS product ascorbate peroxidase 1 note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to reactive oxygen species, response to salt stress, response to heat, hydrogen peroxide catabolic process, embryo development ending in seed dormancy; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G07890.8p transcript_id AT1G07890.8 protein_id AT1G07890.8p transcript_id AT1G07890.8
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439349	AT1G07890.6 CDS ascorbate peroxidase 1 [TAIR10] CDS gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX01, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6 gene APX1 function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_component cytosol|GO:0005829|8422923|TAS go_process response to reactive oxygen species|GO:0000302|15608336|IMP go_process response to heat|GO:0009408|9808745|IEP go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process hydrogen peroxide catabolic process|GO:0042744|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|15608336|IMP go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS go_function L-ascorbate peroxidase activity|GO:0016688||ISS product ascorbate peroxidase 1 note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to reactive oxygen species, response to salt stress, response to heat, hydrogen peroxide catabolic process, embryo development ending in seed dormancy; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 8882 Blast hits to 8124 proteins in 1284 species: Archae - 75; Bacteria - 2940; Metazoa - 21; Fungi - 800; Plants - 3322; Viruses - 0; Other Eukaryotes - 1724 (source: NCBI BLink). protein_id AT1G07890.6p transcript_id AT1G07890.6 protein_id AT1G07890.6p transcript_id AT1G07890.6
At1g07900	chr1:002442624	0.0	W/2442624-2442860,2443296-2443631	AT1G07900.1 CDS LOB domain-containing protein 1 [TAIR10] CDS gene_syn F24B9.1, F24B9_1, LBD1, LOB domain-containing protein 1 gene LBD1 go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_process biological_process|GO:0008150||ND product LOB domain-containing protein 1 note LOB domain-containing protein 1 (LBD1); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1); Has 1035 Blast hits to 1030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1035; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G07900.1p transcript_id AT1G07900.1 protein_id AT1G07900.1p transcript_id AT1G07900.1
AT1G07902	chr1:002443918	0.0	W/2443918-2444010,2444643-2444664,2444679-2444774,2444873-2444883	AT1G07902.1 AT1G07902.1 CDS hypothetical protein
At1g07901	chr1:002443971	0.0	C/2443971-2444123	AT1G07901.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G07901.1p transcript_id AT1G07901.1 protein_id AT1G07901.1p transcript_id AT1G07901.1
At1g07910	chr1:002446185	0.0	W/2446185-2446358,2446667-2447104,2447201-2447251,2447345-2447427,2447844-2447943,2448048-2448126,2448228-2448351,2448702-2448808,2448929-2449057,2449163-2449227,2449344-2449499,2449654-2449814,2449917-2449948,2450208-2450371,2450487-2450566,2450763-2450828,2450986-2451275,2451568-2451675,2451768-2451865,2452044-2452104,2452469-2452545,2452657-2452728,2452807-2452883,2453003-2453083,2453442-2453544,2453698-2453856,2453988-2454386	AT1G07910.2 CDS RNAligase [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA RNA LIGASE, ATRNL, RNAligase, RNL, T6D22.1, T6D22_1, TRNA LIGASE gene RNL function Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase (CPD) component that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo. go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|15653639|IDA go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|16428247|TAS go_function RNA ligase (ATP) activity|GO:0003972|16428247|IGI go_function 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity|GO:0004113|16428247|IGI go_function polynucleotide kinase activity|GO:0051731|16428247|IGI product RNAligase note RNAligase (RNL); CONTAINS InterPro DOMAIN/s: tRNA ligase, phosphodiesterase, fungi (InterPro:IPR015965); Has 209 Blast hits to 196 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G07910.2p transcript_id AT1G07910.2 protein_id AT1G07910.2p transcript_id AT1G07910.2
At1g07910	chr1:002446712	0.0	W/2446712-2447104,2447201-2447251,2447345-2447427,2447844-2447943,2448048-2448126,2448228-2448351,2448702-2448808,2448929-2449057,2449163-2449227,2449344-2449499,2449654-2449814,2449917-2449948,2450208-2450371,2450487-2450566,2450763-2450828,2450986-2451275,2451568-2451675,2451768-2451865,2452044-2452104,2452469-2452545,2452657-2452728,2452807-2452883,2453003-2453083,2453442-2453544,2453698-2453856,2453988-2454386	AT1G07910.1 CDS RNAligase [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA RNA LIGASE, ATRNL, RNAligase, RNL, T6D22.1, T6D22_1, TRNA LIGASE gene RNL function Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase (CPD) component that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo. go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|15653639|IDA go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|16428247|TAS go_function RNA ligase (ATP) activity|GO:0003972|16428247|IGI go_function 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity|GO:0004113|16428247|IGI go_function polynucleotide kinase activity|GO:0051731|16428247|IGI product RNAligase note RNAligase (RNL); CONTAINS InterPro DOMAIN/s: tRNA ligase, phosphodiesterase, fungi (InterPro:IPR015965); Has 209 Blast hits to 196 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G07910.1p transcript_id AT1G07910.1 protein_id AT1G07910.1p transcript_id AT1G07910.1
At1g07920	chr1:002455559	0.0	W/2455559-2456020,2456114-2457001	AT1G07920.1 CDS GTP binding Elongation factor Tu family protein [TAIR10] CDS gene_syn T6D22.2, T6D22_2 go_component nucleolus|GO:0005730|15496452|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component mitochondrion|GO:0005739|14671022|IDA go_function translation elongation factor activity|GO:0003746||ISS go_function calmodulin binding|GO:0005516|11782485|ISS product GTP binding Elongation factor Tu family protein note GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, nucleolus, plasma membrane, chloroplast, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink). protein_id AT1G07920.1p transcript_id AT1G07920.1 protein_id AT1G07920.1p transcript_id AT1G07920.1
At1g07930	chr1:002459014	0.0	W/2459014-2459475,2459571-2459870,2460102-2460458	AT1G07930.2 CDS GTP binding Elongation factor Tu family protein [TAIR10] CDS gene_syn T6D22.31 go_process translational elongation|GO:0006414||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_function translation elongation factor activity|GO:0003746||ISS go_function calmodulin binding|GO:0005516|11782485|ISS product GTP binding Elongation factor Tu family protein note GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: cotyledon, male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 94933 Blast hits to 81944 proteins in 18755 species: Archae - 1142; Bacteria - 33318; Metazoa - 29343; Fungi - 15688; Plants - 2287; Viruses - 5; Other Eukaryotes - 13150 (source: NCBI BLink). protein_id AT1G07930.2p transcript_id AT1G07930.2 protein_id AT1G07930.2p transcript_id AT1G07930.2
At1g07930	chr1:002459014	0.0	W/2459014-2459475,2459571-2460458	AT1G07930.1 CDS GTP binding Elongation factor Tu family protein [TAIR10] CDS gene_syn T6D22.31 go_component vacuole|GO:0005773|14760709|IDA go_process translational elongation|GO:0006414||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_function translation elongation factor activity|GO:0003746||ISS go_function calmodulin binding|GO:0005516|11782485|ISS product GTP binding Elongation factor Tu family protein note GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink). protein_id AT1G07930.1p transcript_id AT1G07930.1 protein_id AT1G07930.1p transcript_id AT1G07930.1
At1g07940	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.1 CDS GTP binding Elongation factor Tu family protein [TAIR10] CDS gene_syn T6D22.3 go_component plasma membrane|GO:0005886|15060130|IDA go_process translational elongation|GO:0006414||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_function translation elongation factor activity|GO:0003746||ISS go_function calmodulin binding|GO:0005516|11782485|ISS product GTP binding Elongation factor Tu family protein note GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink). protein_id AT1G07940.1p transcript_id AT1G07940.1 protein_id AT1G07940.1p transcript_id AT1G07940.1
At1g07940	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.2 CDS GTP binding Elongation factor Tu family protein [TAIR10] CDS gene_syn T6D22.3 go_process translational elongation|GO:0006414||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_function translation elongation factor activity|GO:0003746||ISS go_function calmodulin binding|GO:0005516|11782485|ISS product GTP binding Elongation factor Tu family protein note GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07940.2p transcript_id AT1G07940.2 protein_id AT1G07940.2p transcript_id AT1G07940.2
AT1G07940	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.3 AT1G07940.3 CDS GTP binding Elongation factor Tu family protein
AT1G07940	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.4 AT1G07940.4 CDS GTP binding Elongation factor Tu family protein
At1g07950	chr1:002466061	0.0	C/2466061-2466294,2466640-2466705,2466818-2466982	AT1G07950.1 CDS Surfeit locus protein 5 subunit 22 of Mediator complex [TAIR10] CDS gene_syn MED22B, T6D22.4, T6D22_4 gene MED22B go_component mediator complex|GO:0016592||IEA go_process regulation of transcription from RNA polymerase II promoter|GO:0006357||IEA go_function RNA polymerase II transcription mediator activity|GO:0016455||IEA product Surfeit locus protein 5 subunit 22 of Mediator complex note MED22B; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med22 (InterPro:IPR009332); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 5 subunit 22 of Mediator complex (TAIR:AT1G16430.1); Has 245 Blast hits to 245 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 15; Plants - 53; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). protein_id AT1G07950.1p transcript_id AT1G07950.1 protein_id AT1G07950.1p transcript_id AT1G07950.1
AT1G07950	chr1:002466061	0.0	C/2466061-2466294,2466640-2466705,2466818-2467072	AT1G07950.2 AT1G07950.2 CDS Surfeit locus protein 5 subunit 22 of Mediator complex
At1g07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.1 CDS PDI-like 5-1 [TAIR10] CDS gene_syn ATPDIL5-1, PDI-like 5-1, PDIL5-1, T6D22.5, T6D22_5 gene PDIL5-1 function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. go_component endomembrane system|GO:0012505||IEA go_process cell redox homeostasis|GO:0045454||IEA product PDI-like 5-1 note PDI-like 5-1 (PDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1); Has 11046 Blast hits to 9080 proteins in 1903 species: Archae - 38; Bacteria - 4054; Metazoa - 3042; Fungi - 886; Plants - 964; Viruses - 4; Other Eukaryotes - 2058 (source: NCBI BLink). protein_id AT1G07960.1p transcript_id AT1G07960.1 protein_id AT1G07960.1p transcript_id AT1G07960.1
At1g07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.2 CDS PDI-like 5-1 [TAIR10] CDS gene_syn ATPDIL5-1, PDI-like 5-1, PDIL5-1, T6D22.5, T6D22_5 gene PDIL5-1 function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. go_component endomembrane system|GO:0012505||IEA go_process cell redox homeostasis|GO:0045454||IEA product PDI-like 5-1 note PDI-like 5-1 (PDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07960.2p transcript_id AT1G07960.2 protein_id AT1G07960.2p transcript_id AT1G07960.2
At1g07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.3 CDS PDI-like 5-1 [TAIR10] CDS gene_syn ATPDIL5-1, PDI-like 5-1, PDIL5-1, T6D22.5, T6D22_5 gene PDIL5-1 function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. go_component endomembrane system|GO:0012505||IEA go_process cell redox homeostasis|GO:0045454||IEA product PDI-like 5-1 note PDI-like 5-1 (PDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07960.3p transcript_id AT1G07960.3 protein_id AT1G07960.3p transcript_id AT1G07960.3
AT1G07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.4 AT1G07960.4 CDS PDI-like 5-1
At1g07970	chr1:002469528	0.0	C/2469528-2469668,2469780-2470153,2470232-2470435,2470690-2470888,2471046-2471947,2472041-2472096,2472313-2472518	AT1G07970.1 CDS cytochrome B561, amino-terminal protein [TAIR10] CDS gene_syn T6D22.6, T6D22_6 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G07970.1p transcript_id AT1G07970.1 protein_id AT1G07970.1p transcript_id AT1G07970.1
At1g07980	chr1:002473523	0.0	C/2473523-2473596,2473684-2473725,2473963-2474047,2474491-2474910	AT1G07980.1 CDS nuclear factor Y, subunit C10 [TAIR10] CDS gene_syn nuclear factor Y, subunit C10, NF-YC10, T6D22.7, T6D22_7 gene NF-YC10 go_component intracellular|GO:0005622||IEA go_component chloroplast|GO:0009507||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product nuclear factor Y, subunit C10 note nuclear factor Y, subunit C10 (NF-YC10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); Has 1154 Blast hits to 1151 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 432; Fungi - 306; Plants - 324; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). protein_id AT1G07980.1p transcript_id AT1G07980.1 protein_id AT1G07980.1p transcript_id AT1G07980.1
AT1G07980	chr1:002473952	0.0	C/2473952-2474047,2474491-2474910	AT1G07980.2 AT1G07980.2 CDS nuclear factor Y, subunit C10
At1g07985	chr1:002475508	0.0	W/2475508-2475942	AT1G07985.1 CDS Expressed protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Expressed protein note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G07985.1p transcript_id AT1G07985.1 protein_id AT1G07985.1p transcript_id AT1G07985.1
At1g07990	chr1:002477413	0.0	W/2477413-2477451,2477676-2477779,2477966-2478052,2478186-2478261,2478388-2478462,2478599-2478652,2478979-2479038,2479123-2479239,2479400-2479494,2479590-2479798,2480178-2480275,2480406-2480509,2480597-2480759,2480920-2481042,2481215-2481297,2481580-2481712,2481796-2481825,2481972-2482042,2482211-2482898	AT1G07990.1 CDS SIT4 phosphatase-associated family protein [TAIR10] CDS gene_syn T6D22.8, T6D22_8 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND product SIT4 phosphatase-associated family protein note SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT2G28360.1); Has 1048 Blast hits to 891 proteins in 200 species: Archae - 0; Bacteria - 31; Metazoa - 354; Fungi - 329; Plants - 109; Viruses - 3; Other Eukaryotes - 222 (source: NCBI BLink). protein_id AT1G07990.1p transcript_id AT1G07990.1 protein_id AT1G07990.1p transcript_id AT1G07990.1
AT1G07990	chr1:002477413	0.0	W/2477413-2477451,2477676-2477779,2477966-2478052,2478186-2478261,2478388-2478462,2478599-2478652,2478979-2479038,2479123-2479239,2479400-2479494,2479590-2479798,2480178-2480275,2480406-2480509,2480597-2480759,2480920-2481042,2481215-2481297,2481580-2481712,2481796-2481942	AT1G07990.2 AT1G07990.2 CDS SIT4 phosphatase-associated family protein
At1g08000	chr1:002483460	0.0	C/2483460-2484125,2484304-2484564	AT1G08000.1 CDS GATA transcription factor 10 [TAIR10] CDS gene_syn GATA transcription factor 10, GATA10, T6D22.9, T6D22_9 gene GATA10 function Encodes a member of the GATA factor family of zinc finger transcription factors. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product GATA transcription factor 10 note GATA transcription factor 10 (GATA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2); Has 1492 Blast hits to 1460 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 625; Plants - 786; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). protein_id AT1G08000.1p transcript_id AT1G08000.1 protein_id AT1G08000.1p transcript_id AT1G08000.1
At1g08000	chr1:002483460	0.0	C/2483460-2484125,2484304-2484564	AT1G08000.2 CDS GATA transcription factor 10 [TAIR10] CDS gene_syn GATA transcription factor 10, GATA10, T6D22.9, T6D22_9 gene GATA10 function Encodes a member of the GATA factor family of zinc finger transcription factors. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product GATA transcription factor 10 note GATA transcription factor 10 (GATA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08000.2p transcript_id AT1G08000.2 protein_id AT1G08000.2p transcript_id AT1G08000.2
At1g08005	chr1:002485344	0.0	W/2485344-2485511	AT1G08005.1 CDS serine/threonine-protein phosphatase 6 regulatory subunit [TAIR10] CDS product unknown protein note BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G08005.1p transcript_id AT1G08005.1 protein_id AT1G08005.1p transcript_id AT1G08005.1
At1g08010	chr1:002486202	0.0	C/2486202-2486846,2487136-2487402	AT1G08010.1 CDS GATA transcription factor 11 [TAIR10] CDS gene_syn GATA transcription factor 11, GATA11, T6D22.28, T6D22_28 gene GATA11 function Encodes a member of the GATA factor family of zinc finger transcription factors. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product GATA transcription factor 11 note GATA transcription factor 11 (GATA11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 10 (TAIR:AT1G08000.2); Has 1564 Blast hits to 1518 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 649; Plants - 800; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). protein_id AT1G08010.1p transcript_id AT1G08010.1 protein_id AT1G08010.1p transcript_id AT1G08010.1
At1g08010	chr1:002486202	0.0	C/2486202-2486846,2487136-2487402	AT1G08010.2 CDS GATA transcription factor 11 [TAIR10] CDS gene_syn GATA transcription factor 11, GATA11, T6D22.28, T6D22_28 gene GATA11 function Encodes a member of the GATA factor family of zinc finger transcription factors. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product GATA transcription factor 11 note GATA transcription factor 11 (GATA11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 10 (TAIR:AT1G08000.2); Has 1564 Blast hits to 1518 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 649; Plants - 800; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). protein_id AT1G08010.2p transcript_id AT1G08010.2 protein_id AT1G08010.2p transcript_id AT1G08010.2
AT1G08010	chr1:002486202	0.0	C/2486202-2486846,2487136-2487402	AT1G08010.3 AT1G08010.3 CDS GATA transcription factor 11
At1g08030	chr1:002489575	0.0	C/2489575-2489745,2489824-2489958,2490047-2490166,2490239-2490289,2490377-2490426,2491013-2491157,2491250-2491354,2491434-2491574,2491683-2491968,2492262-2492333,2492419-2492590,2492687-2492741	AT1G08030.1 CDS tyrosylprotein sulfotransferase [TAIR10] CDS gene_syn T6D22.29, T6D22_29, TPST, tyrosylprotein sulfotransferase gene TPST function Encodes a tyrosylprotein sulfotransferase (TPST). This protein is a 500-aa type I transmembrane protein that shows no sequence similarity to animal TPSTs. Activity confirmed by protein expression in yeast. TPST is expressed throughout the plant body, and the highest levels of expression are in the root apical meristem. A loss-of-function mutant TPST displayed a marked dwarf phenotype accompanied by stunted roots, pale green leaves, reduction in higher order veins, early senescence, and a reduced number of flowers and siliques. go_process carbohydrate biosynthetic process|GO:0016051||IEA go_component Golgi apparatus|GO:0005794|19666544|IDA go_function protein-tyrosine sulfotransferase activity|GO:0008476|19666544|IDA product tyrosylprotein sulfotransferase note tyrosylprotein sulfotransferase (TPST); FUNCTIONS IN: protein-tyrosine sulfotransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR005331), Heparan sulphate 6-sulfotransferase (InterPro:IPR010635); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G08030.1p transcript_id AT1G08030.1 protein_id AT1G08030.1p transcript_id AT1G08030.1
AT1G08030	chr1:002489575	0.0	C/2489575-2489745,2489824-2489958,2490047-2490166,2490239-2490289,2490377-2490426,2491013-2491157,2491250-2491354,2491434-2491574,2491683-2491968,2492262-2492333,2492419-2492590,2492687-2492741	AT1G08030.2 AT1G08030.2 CDS tyrosylprotein sulfotransferase
At1g08032	chr1:002494123	0.0	W/2494123-2494126,2494209-2494315	AT1G08032.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G08032.1p transcript_id AT1G08032.1 protein_id AT1G08032.1p transcript_id AT1G08032.1
At1g08035	chr1:002494772	0.0	W/2494772-2495149	AT1G08035.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28330.1); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G08035.1p transcript_id AT1G08035.1 protein_id AT1G08035.1p transcript_id AT1G08035.1
AT1G08035	chr1:002494814	0.0	W/2494814-2495149	AT1G08035.2 AT1G08035.2 CDS hypothetical protein
AT1G08035	chr1:002494814	0.0	W/2494814-2495149	AT1G08035.3 AT1G08035.3 CDS hypothetical protein
AT1G08040	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497853,2497954-2497973	AT1G08040.3 AT1G08040.3 CDS trimethylguanosine synthase (DUF707)
At1g08040	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497865,2497954-2497973	AT1G08040.1 CDS trimethylguanosine synthase (DUF707) [TAIR10] CDS gene_syn T6D22.12, T6D22_12 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF707) note Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3); Has 328 Blast hits to 327 proteins in 28 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G08040.1p transcript_id AT1G08040.1 protein_id AT1G08040.1p transcript_id AT1G08040.1
At1g08040	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497865,2497954-2497973	AT1G08040.2 CDS trimethylguanosine synthase (DUF707) [TAIR10] CDS gene_syn T6D22.12, T6D22_12 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF707) note Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08040.2p transcript_id AT1G08040.2 protein_id AT1G08040.2p transcript_id AT1G08040.2
AT1G08040	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497865,2497954-2497973	AT1G08040.4 AT1G08040.4 CDS trimethylguanosine synthase (DUF707)
At1g08050	chr1:002499088	0.0	C/2499088-2500815,2501114-2501311	AT1G08050.1 CDS Zinc finger (C3HC4-type RING finger) family protein [TAIR10] CDS gene_syn T6D22.13, T6D22_13 go_component plasma membrane|GO:0005886|17317660|IDA go_function zinc ion binding|GO:0008270||IEA go_function ubiquitin-protein ligase activity|GO:0004842||ISS go_function zinc ion binding|GO:0008270||ISS product Zinc finger (C3HC4-type RING finger) family protein note Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60710.1); Has 3591 Blast hits to 3577 proteins in 633 species: Archae - 55; Bacteria - 1268; Metazoa - 812; Fungi - 224; Plants - 715; Viruses - 5; Other Eukaryotes - 512 (source: NCBI BLink). protein_id AT1G08050.1p transcript_id AT1G08050.1 protein_id AT1G08050.1p transcript_id AT1G08050.1
At1g08060	chr1:002501981	0.0	C/2501981-2502504,2502578-2502788,2502871-2503070,2503160-2503337,2503471-2503635,2503719-2503874,2504018-2504173,2504309-2505706,2505907-2506011,2506572-2506813,2506894-2507815,2508109-2508282,2508676-2508921,2509037-2509115,2509239-2510488	AT1G08060.1 CDS ATP-dependent helicase family protein [TAIR10] CDS gene_syn MAINTENANCE OF METHYLATION, MOM, MOM1, MORPHEUS MOLECULE, MORPHEUS MOLECULE 1, T6D22.14, T6D22_14 gene MOM go_component nucleus|GO:0005634|10821279|IDA go_process chromatin silencing|GO:0006342|10821279|IMP product ATP-dependent helicase family protein note MORPHEUS MOLECULE (MOM); INVOLVED IN: chromatin silencing; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: chromatin remodeling 4 (TAIR:AT5G44800.1); Has 8505 Blast hits to 7857 proteins in 726 species: Archae - 6; Bacteria - 999; Metazoa - 3217; Fungi - 2019; Plants - 785; Viruses - 95; Other Eukaryotes - 1384 (source: NCBI BLink). protein_id AT1G08060.1p transcript_id AT1G08060.1 protein_id AT1G08060.1p transcript_id AT1G08060.1
At1g08060	chr1:002501981	0.0	C/2501981-2502504,2502578-2502788,2502871-2503070,2503160-2503337,2503471-2503635,2503719-2503874,2504018-2504173,2504309-2505706,2505907-2506011,2506572-2506813,2506894-2507815,2508109-2508282,2508676-2508921,2509037-2509115,2509239-2510488	AT1G08060.2 CDS ATP-dependent helicase family protein [TAIR10] CDS gene_syn MAINTENANCE OF METHYLATION, MOM, MOM1, MORPHEUS MOLECULE, MORPHEUS MOLECULE 1, T6D22.14, T6D22_14 gene MOM go_component nucleus|GO:0005634|10821279|IDA go_process chromatin silencing|GO:0006342|10821279|IMP product ATP-dependent helicase family protein note MORPHEUS MOLECULE (MOM); INVOLVED IN: chromatin silencing; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: chromatin remodeling 4 (TAIR:AT5G44800.1); Has 8505 Blast hits to 7857 proteins in 726 species: Archae - 6; Bacteria - 999; Metazoa - 3217; Fungi - 2019; Plants - 785; Viruses - 95; Other Eukaryotes - 1384 (source: NCBI BLink). protein_id AT1G08060.2p transcript_id AT1G08060.2 protein_id AT1G08060.2p transcript_id AT1G08060.2
AT1G08060	chr1:002501981	0.0	C/2501981-2502504,2502578-2502788,2502871-2503070,2503160-2503337,2503471-2503635,2503719-2503874,2504018-2504173,2504309-2505706,2505907-2506011,2506572-2506813,2506894-2507818,2508109-2508282,2508676-2508921,2509037-2509115,2509239-2510488	AT1G08060.3 AT1G08060.3 CDS ATP-dependent helicase family protein
At1g08065	chr1:002511788	0.0	C/2511788-2511877,2512004-2512057,2512151-2512318,2512432-2512534,2512690-2512802,2512889-2513106,2513254-2513341	AT1G08065.1 CDS alpha carbonic anhydrase 5 [TAIR10] CDS gene_syn ACA5, ALPHA CARBONIC ANHYDRASE 5, ATACA5, T6D22.30, T6D22_30, alpha carbonic anhydrase 5 gene ACA5 go_component endomembrane system|GO:0012505||IEA go_process one-carbon metabolic process|GO:0006730||IEA go_function carbonate dehydratase activity|GO:0004089||IEA go_function zinc ion binding|GO:0008270||IEA go_process one-carbon metabolic process|GO:0006730||ISS go_function carbonate dehydratase activity|GO:0004089||ISS go_function zinc ion binding|GO:0008270||ISS product alpha carbonic anhydrase 5 note alpha carbonic anhydrase 5 (ACA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 7 (TAIR:AT1G08080.1); Has 3351 Blast hits to 3338 proteins in 543 species: Archae - 0; Bacteria - 710; Metazoa - 2051; Fungi - 82; Plants - 328; Viruses - 7; Other Eukaryotes - 173 (source: NCBI BLink). protein_id AT1G08065.1p transcript_id AT1G08065.1 protein_id AT1G08065.1p transcript_id AT1G08065.1
AT1G08070	chr1:002514374	0.0	C/2514374-2516287	AT1G08070.2 AT1G08070.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g08070	chr1:002514374	0.0	C/2514374-2516599	AT1G08070.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn ORGANELLE TRANSCRIPT PROCESSING 82, OTP82, T6D22.15, T6D22_15 gene OTP82 function Encodes a chloroplast RNA editing factor. go_component cellular_component|GO:0005575||ND go_process chloroplast RNA processing|GO:0031425|19934379|IMP go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note ORGANELLE TRANSCRIPT PROCESSING 82 (OTP82); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 45065 Blast hits to 15003 proteins in 296 species: Archae - 0; Bacteria - 12; Metazoa - 221; Fungi - 219; Plants - 43815; Viruses - 0; Other Eukaryotes - 798 (source: NCBI BLink). protein_id AT1G08070.1p transcript_id AT1G08070.1 protein_id AT1G08070.1p transcript_id AT1G08070.1
At1g08080	chr1:002517022	0.0	C/2517022-2517096,2517214-2517267,2517351-2517518,2517628-2517730,2517826-2517932,2518154-2518371,2518444-2518546	AT1G08080.1 CDS alpha carbonic anhydrase 7 [TAIR10] CDS gene_syn A. THALIANA ALPHA CARBONIC ANHYDRASE 7, ACA7, ATACA7, T6D22.16, T6D22_16, alpha carbonic anhydrase 7 gene ACA7 go_component endomembrane system|GO:0012505||IEA go_process one-carbon metabolic process|GO:0006730||IEA go_function carbonate dehydratase activity|GO:0004089||IEA go_function zinc ion binding|GO:0008270||IEA go_process one-carbon metabolic process|GO:0006730||ISS go_function carbonate dehydratase activity|GO:0004089||ISS go_function zinc ion binding|GO:0008270||ISS product alpha carbonic anhydrase 7 note alpha carbonic anhydrase 7 (ACA7); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338); BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 5 (TAIR:AT1G08065.1); Has 3434 Blast hits to 3405 proteins in 557 species: Archae - 0; Bacteria - 714; Metazoa - 2114; Fungi - 83; Plants - 330; Viruses - 6; Other Eukaryotes - 187 (source: NCBI BLink). protein_id AT1G08080.1p transcript_id AT1G08080.1 protein_id AT1G08080.1p transcript_id AT1G08080.1
At1g08090	chr1:002524139	0.0	W/2524139-2524948,2525049-2525164,2525254-2525920	AT1G08090.1 CDS nitrate transporter 2:1 [TAIR10] CDS gene_syn ACH1, ATNRT2.1, ATNRT2:1, LATERAL ROOT INITIATION 1, LIN1, NITRATE TRANSPORTER 1, NITRATE TRANSPORTER 2, NITRATE TRANSPORTER 2.1, NRT2, NRT2.1, NRT2:1, NRT2;1AT, T6D22.17, T6D22_17, TRANS-MEMBRANE NITRATE TRANSPORTER PROTEIN ATNRT2:1, nitrate transporter 2:1 gene NRT2:1 function High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. go_component membrane|GO:0016020|16157886|ISS go_process response to nitrate|GO:0010167|16415212|IEP go_process nitrate transport|GO:0015706|11165253|IMP go_process nitrate transport|GO:0015706|16415211|IMP go_process lateral root development|GO:0048527|16157886|IMP go_process lateral root development|GO:0048527|16415211|IMP go_function nitrate transmembrane transporter activity|GO:0015112|16157886|TAS go_function nitrate transmembrane transporter activity|GO:0015112||ISS product nitrate transporter 2:1 note nitrate transporter 2:1 (NRT2:1); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 2.2 (TAIR:AT1G08100.1); Has 5150 Blast hits to 5022 proteins in 1376 species: Archae - 45; Bacteria - 4402; Metazoa - 22; Fungi - 274; Plants - 247; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). protein_id AT1G08090.1p transcript_id AT1G08090.1 protein_id AT1G08090.1p transcript_id AT1G08090.1
At1g08100	chr1:002527268	0.0	C/2527268-2527916,2528055-2528170,2528275-2529078	AT1G08100.1 CDS nitrate transporter 2.2 [TAIR10] CDS gene_syn ACH2, ATNRT2.2, NITRATE TRANSPORTER 2, NITRATE TRANSPORTER 2.2, NRT2.2, NRT2;2AT, T6D22.18, T6D22_18, nitrate transporter 2.2 gene NRT2.2 function Encodes a high-affinity nitrate transporter. go_process nitrate transport|GO:0015706|10205909|TAS go_process nitrate transport|GO:0015706|16415211|IMP go_process lateral root development|GO:0048527|16415211|IMP go_function nitrate transmembrane transporter activity|GO:0015112||ISS product nitrate transporter 2.2 note nitrate transporter 2.2 (NRT2.2); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 2:1 (TAIR:AT1G08090.1); Has 5331 Blast hits to 5172 proteins in 1398 species: Archae - 41; Bacteria - 4556; Metazoa - 25; Fungi - 295; Plants - 255; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink). protein_id AT1G08100.1p transcript_id AT1G08100.1 protein_id AT1G08100.1p transcript_id AT1G08100.1
At1g08105	chr1:002531695	0.0	C/2531695-2534786	AT1G08105.1 [TAIR10] mRNA
At1g08105	chr1:002531695	0.0	C/2531695-2534786	AT1G08105 [TAIR10] TE pseudo gene_syn T6D22.19, T6D22_19 note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.0e-298 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)
At1g08110	chr1:002535463	0.0	W/2535463-2535585,2535675-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.4 CDS lactoylglutathione lyase family protein / glyoxalase I family protein [TAIR10] CDS gene_syn T6D22.20, T6D22_20 go_component chloroplast|GO:0009507|18431481|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS go_function calmodulin binding|GO:0005516|11782485|ISS product lactoylglutathione lyase family protein / glyoxalase I family protein note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08110.4p transcript_id AT1G08110.4 protein_id AT1G08110.4p transcript_id AT1G08110.4
At1g08110	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.1 CDS lactoylglutathione lyase family protein / glyoxalase I family protein [TAIR10] CDS gene_syn T6D22.20, T6D22_20 go_component chloroplast|GO:0009507|18431481|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS go_function calmodulin binding|GO:0005516|11782485|ISS product lactoylglutathione lyase family protein / glyoxalase I family protein note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 4789 Blast hits to 4500 proteins in 1507 species: Archae - 34; Bacteria - 2875; Metazoa - 164; Fungi - 363; Plants - 266; Viruses - 0; Other Eukaryotes - 1087 (source: NCBI BLink). protein_id AT1G08110.1p transcript_id AT1G08110.1 protein_id AT1G08110.1p transcript_id AT1G08110.1
At1g08110	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.2 CDS lactoylglutathione lyase family protein / glyoxalase I family protein [TAIR10] CDS gene_syn T6D22.20, T6D22_20 go_component chloroplast|GO:0009507|18431481|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS go_function calmodulin binding|GO:0005516|11782485|ISS product lactoylglutathione lyase family protein / glyoxalase I family protein note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 4789 Blast hits to 4500 proteins in 1507 species: Archae - 34; Bacteria - 2875; Metazoa - 164; Fungi - 363; Plants - 266; Viruses - 0; Other Eukaryotes - 1087 (source: NCBI BLink). protein_id AT1G08110.2p transcript_id AT1G08110.2 protein_id AT1G08110.2p transcript_id AT1G08110.2
At1g08110	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.3 CDS lactoylglutathione lyase family protein / glyoxalase I family protein [TAIR10] CDS gene_syn T6D22.20, T6D22_20 go_component chloroplast|GO:0009507|18431481|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS go_function calmodulin binding|GO:0005516|11782485|ISS product lactoylglutathione lyase family protein / glyoxalase I family protein note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08110.3p transcript_id AT1G08110.3 protein_id AT1G08110.3p transcript_id AT1G08110.3
At1g08115	chr1:002538076	0.0	C/2538076-2538237	AT1G08115.1 [TAIR10] snRNA gene_syn 52201.SNRNA00001 function U1A small nuclear RNA go_component U1 snRNP|GO:0005685||TAS go_process nuclear mRNA splicing, via spliceosome|GO:0000398||TAS product snRNA note gi|22293581|emb|AJ505685.1|ATH505685 Arabidopsis putative U1a snRNA (U1asnRNA gene), 5' end incomplete, At5g05684 transcript_id AT1G08115.1
At1g08120	chr1:002538678	0.0	W/2538678-2538941	AT1G08120.1 CDS TP53-regulating kinase-like protein [TAIR10] CDS gene_syn T6D22.21, T6D22_21 go_component cellular_component|GO:0005575||ND product unknown protein note BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G26110.1); Has 235 Blast hits to 235 proteins in 96 species: Archae - 21; Bacteria - 0; Metazoa - 117; Fungi - 8; Plants - 47; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT1G08120.1p transcript_id AT1G08120.1 protein_id AT1G08120.1p transcript_id AT1G08120.1
At1g08125	chr1:002539748	0.0	C/2539748-2539759,2539852-2540163,2540237-2540329,2540410-2540484,2540588-2540685,2540881-2540997,2541116-2541209,2541656-2541721,2541796-2541862,2542013-2542038,2542124-2542132	AT1G08125.2 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Methyltransferase-16, putative (InterPro:IPR019410); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73320.1). protein_id AT1G08125.2p transcript_id AT1G08125.2 protein_id AT1G08125.2p transcript_id AT1G08125.2
At1g08125	chr1:002539748	0.0	C/2539748-2539759,2539852-2540163,2540237-2540329,2540410-2540484,2540588-2540685,2540881-2540997,2541116-2541209,2541656-2541721,2541796-2541862,2542217-2542230	AT1G08125.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Methyltransferase-16, putative (InterPro:IPR019410); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08125.1p transcript_id AT1G08125.1 protein_id AT1G08125.1p transcript_id AT1G08125.1
AT1G08125	chr1:002539748	0.0	C/2539748-2539759,2539852-2540163,2540237-2540329,2540410-2540484,2540972-2540997,2541116-2541209,2541656-2541676	AT1G08125.4 AT1G08125.4 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
At1g08125	chr1:002539748	0.0	C/2539748-2539759,2539852-2540163,2540237-2540329,2540410-2540484,2540972-2540997,2541116-2541209,2541656-2541721,2541796-2541862,2542013-2542038,2542124-2542183	AT1G08125.3 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Methyltransferase-16, putative (InterPro:IPR019410); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73320.1). protein_id AT1G08125.3p transcript_id AT1G08125.3 protein_id AT1G08125.3p transcript_id AT1G08125.3
At1g08130	chr1:002542913	0.0	C/2542913-2542981,2543097-2543174,2543277-2543354,2543460-2543516,2543595-2543668,2543769-2543840,2543920-2543981,2544060-2544161,2544745-2544857,2544964-2545095,2545554-2545641,2545720-2545814,2545909-2546139,2546370-2546486,2546563-2546664,2546793-2546909,2547030-2547815	AT1G08130.1 CDS DNA ligase 1 [TAIR10] CDS gene_syn ATLIG1, DNA ligase 1, LIG1, T6D22.23 gene LIG1 function Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. go_process DNA replication|GO:0006260||IEA go_process DNA repair|GO:0006281||IEA go_process DNA recombination|GO:0006310||IEA go_function DNA binding|GO:0003677||IEA go_function DNA ligase (ATP) activity|GO:0003910||IEA go_function ATP binding|GO:0005524||IEA go_component nucleus|GO:0005634|16790030|IDA go_component mitochondrion|GO:0005739|16790030|IDA go_function DNA ligase (ATP) activity|GO:0003910||ISS go_function ATP binding|GO:0005524||ISS product DNA ligase 1 note DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). protein_id AT1G08130.1p transcript_id AT1G08130.1 protein_id AT1G08130.1p transcript_id AT1G08130.1
At1g08135	chr1:002548819	0.0	C/2548819-2549250,2549338-2549991,2550085-2551101,2551186-2551473	AT1G08135.1 CDS cation/H+ exchanger 6B [TAIR10] CDS gene_syn ATCHX6B, CHX6B, cation/H+ exchanger 6B gene CHX6B go_component integral to membrane|GO:0016021||IEA go_process cation transport|GO:0006812|11500563|IC go_function monovalent cation:hydrogen antiporter activity|GO:0005451|11500563|NAS product cation/H+ exchanger 6B note cation/H+ exchanger 6B (CHX6B); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT2G28170.1); Has 1422 Blast hits to 1406 proteins in 439 species: Archae - 64; Bacteria - 709; Metazoa - 0; Fungi - 111; Plants - 510; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). protein_id AT1G08135.1p transcript_id AT1G08135.1 protein_id AT1G08135.1p transcript_id AT1G08135.1
At1g08140	chr1:002552206	0.0	C/2552206-2552700,2552924-2553586,2553681-2554700,2554796-2555074	AT1G08140.1 CDS cation/H+ exchanger 6A [TAIR10] CDS gene_syn ATCHX6A, CHX6A, cation/H+ exchanger 6A gene CHX6A function member of Putative Na+/H+ antiporter family go_component integral to membrane|GO:0016021||IEA go_process cation transport|GO:0006812|11500563|IC go_function monovalent cation:hydrogen antiporter activity|GO:0005451|11500563|NAS go_function sodium:hydrogen antiporter activity|GO:0015385||ISS product cation/H+ exchanger 6A note cation/H+ exchanger 6A (CHX6A); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT2G28170.1); Has 1486 Blast hits to 1465 proteins in 477 species: Archae - 56; Bacteria - 742; Metazoa - 0; Fungi - 110; Plants - 524; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). protein_id AT1G08140.1p transcript_id AT1G08140.1 protein_id AT1G08140.1p transcript_id AT1G08140.1
At1g08150	chr1:002556343	0.0	C/2556343-2556807,2556907-2557566,2557671-2558690,2558772-2559074	AT1G08150.1 CDS Cation/hydrogen exchanger family protein [TAIR10] CDS gene_syn ATCHX5, CATION/H+ EXCHANGER 5, CHX5, T6D22.24 gene ATCHX5 function member of Putative Na+/H+ antiporter family go_component integral to membrane|GO:0016021||IEA go_process cation transport|GO:0006812|11500563|IC go_function monovalent cation:hydrogen antiporter activity|GO:0005451|11500563|NAS go_function sodium:hydrogen antiporter activity|GO:0015385||ISS product Cation/hydrogen exchanger family protein note ATCHX5; FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 6A (TAIR:AT1G08140.1); Has 2700 Blast hits to 2678 proteins in 819 species: Archae - 128; Bacteria - 1881; Metazoa - 0; Fungi - 113; Plants - 529; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). protein_id AT1G08150.1p transcript_id AT1G08150.1 protein_id AT1G08150.1p transcript_id AT1G08150.1
At1g08160	chr1:002559672	0.0	C/2559672-2560337	AT1G08160.1 CDS Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family note Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT5G22870.1); Has 611 Blast hits to 611 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 611; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G08160.1p transcript_id AT1G08160.1 protein_id AT1G08160.1p transcript_id AT1G08160.1
At1g08165	chr1:002561913	0.0	C/2561913-2561963,2562056-2562148	AT1G08165.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G08165.1p transcript_id AT1G08165.1 protein_id AT1G08165.1p transcript_id AT1G08165.1
At1g08170	chr1:002562941	0.0	C/2562941-2563672	AT1G08170.1 CDS Histone superfamily protein [TAIR10] CDS gene_syn T6D22.26 go_component nucleosome|GO:0000786||IEA go_component nucleus|GO:0005634||IEA go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT2G28720.1); Has 3412 Blast hits to 3396 proteins in 350 species: Archae - 0; Bacteria - 51; Metazoa - 2306; Fungi - 230; Plants - 467; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink). protein_id AT1G08170.1p transcript_id AT1G08170.1 protein_id AT1G08170.1p transcript_id AT1G08170.1
At1g08180	chr1:002564741	0.0	C/2564741-2565076	AT1G08180.1 CDS cyclin-dependent kinase inhibitor [TAIR10] CDS gene_syn T23G18.4, T23G18_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G08180.1p transcript_id AT1G08180.1 protein_id AT1G08180.1p transcript_id AT1G08180.1
At1g08190	chr1:002567652	0.0	W/2567652-2567921,2568161-2568433,2568512-2568691,2568788-2569045,2569148-2569280,2569369-2569459,2569556-2569658,2570019-2570122,2570208-2570301,2570473-2570628,2570708-2570770,2570878-2570943,2571265-2571492,2571584-2571661,2571750-2571869,2571998-2572078,2572192-2572277,2572496-2572577,2572666-2573142	AT1G08190.1 CDS vacuolar protein sorting 41 [TAIR10] CDS gene_syn ATVAM2, ATVPS41, T23G18.5, T23G18_5, VACUOLAR PROTEIN SORTING 41, VAM2, VPS41, ZIGZAG SUPPRESSOR 2, ZIP2, vacuolar protein sorting 41 gene VPS41 function Might be involved in protein sorting to the vacuole. go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_process protein targeting to vacuole|GO:0006623|19884248|TAS go_process gravitropism|GO:0009630|19884248|IMP go_function nucleotide binding|GO:0000166||ISS product vacuolar protein sorting 41 note vacuolar protein sorting 41 (VPS41); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding; INVOLVED IN: gravitropism, protein targeting to vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), Vacuolar protein sorting-associated protein 41 (InterPro:IPR016902), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); Has 13288 Blast hits to 4251 proteins in 360 species: Archae - 4; Bacteria - 340; Metazoa - 7814; Fungi - 1141; Plants - 584; Viruses - 346; Other Eukaryotes - 3059 (source: NCBI BLink). protein_id AT1G08190.1p transcript_id AT1G08190.1 protein_id AT1G08190.1p transcript_id AT1G08190.1
At1g08200	chr1:002574259	0.0	C/2574259-2574371,2574458-2574593,2574687-2574779,2574876-2574977,2575067-2575200,2575282-2575396,2575862-2575969,2576094-2576186,2576334-2576609	AT1G08200.1 CDS UDP-D-apiose/UDP-D-xylose synthase 2 [TAIR10] CDS gene_syn AXS2, T23G18.6, T23G18_6, UDP-D-apiose/UDP-D-xylose synthase 2 gene AXS2 function Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase. go_component apoplast|GO:0048046|18538804|IDA go_component cytoplasm|GO:0005737|12969423|NAS go_process nucleotide-sugar biosynthetic process|GO:0009226|12969423|ISS go_function UDP-glucuronate decarboxylase activity|GO:0048040|12969423|ISS product UDP-D-apiose/UDP-D-xylose synthase 2 note UDP-D-apiose/UDP-D-xylose synthase 2 (AXS2); FUNCTIONS IN: UDP-glucuronate decarboxylase activity; INVOLVED IN: nucleotide-sugar biosynthetic process; LOCATED IN: apoplast, cytoplasm; EXPRESSED IN: fruit, guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-D-apiose/UDP-D-xylose synthase 1 (TAIR:AT2G27860.1); Has 18414 Blast hits to 18403 proteins in 2616 species: Archae - 518; Bacteria - 11662; Metazoa - 253; Fungi - 80; Plants - 1043; Viruses - 12; Other Eukaryotes - 4846 (source: NCBI BLink). protein_id AT1G08200.1p transcript_id AT1G08200.1 protein_id AT1G08200.1p transcript_id AT1G08200.1
At1g08210	chr1:002577119	0.0	C/2577119-2577279,2577357-2577428,2577510-2577576,2577864-2577957,2578040-2578113,2578315-2578477,2578865-2579092,2579434-2579678,2579819-2579948,2580337-2580581	AT1G08210.1 CDS Eukaryotic aspartyl protease family protein [TAIR10] CDS go_process proteolysis|GO:0006508||IEA go_function aspartic-type endopeptidase activity|GO:0004190||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process proteolysis|GO:0006508||ISS product Eukaryotic aspartyl protease family protein note Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G22850.1); Has 5025 Blast hits to 5004 proteins in 412 species: Archae - 0; Bacteria - 0; Metazoa - 1724; Fungi - 965; Plants - 2068; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink). protein_id AT1G08210.1p transcript_id AT1G08210.1 protein_id AT1G08210.1p transcript_id AT1G08210.1
AT1G08210	chr1:002577119	0.0	C/2577119-2577279,2577357-2577428,2577510-2577576,2577864-2577957,2578040-2578113,2578315-2578477,2578865-2579092,2579434-2579678,2579819-2579948,2580337-2580683	AT1G08210.4 AT1G08210.4 CDS Eukaryotic aspartyl protease family protein
AT1G08210	chr1:002577119	0.0	C/2577119-2577279,2577357-2577428,2577510-2577576,2577864-2577957,2578040-2578113,2578315-2578477,2578865-2579092,2579434-2579678,2579819-2579948,2580337-2580725	AT1G08210.3 AT1G08210.3 CDS Eukaryotic aspartyl protease family protein
AT1G08210	chr1:002577119	0.0	C/2577119-2577279,2577357-2577576,2577864-2577957,2578040-2578113,2578315-2578477,2578865-2579092,2579434-2579678,2579819-2579948,2580337-2580581	AT1G08210.2 AT1G08210.2 CDS Eukaryotic aspartyl protease family protein
At1g08220	chr1:002581574	0.0	C/2581574-2581691,2581788-2581963,2582087-2582158,2582370-2582558,2582797-2582850	AT1G08220.2 CDS ATPase complex subunit [TAIR10] CDS gene_syn T23G18.8, T23G18_8 go_component mitochondrial inner membrane|GO:0005743||IEA go_process mitochondrial proton-transporting ATP synthase complex assembly|GO:0033615||IEA go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 152 Blast hits to 152 proteins in 76 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 92; Plants - 30; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). protein_id AT1G08220.2p transcript_id AT1G08220.2 protein_id AT1G08220.2p transcript_id AT1G08220.2
At1g08220	chr1:002581574	0.0	C/2581574-2581691,2581788-2581963,2582087-2582158,2582370-2582558,2582797-2582860,2582998-2583038,2583124-2583288	AT1G08220.1 CDS ATPase complex subunit [TAIR10] CDS gene_syn T23G18.8, T23G18_8 go_component mitochondrial inner membrane|GO:0005743||IEA go_process mitochondrial proton-transporting ATP synthase complex assembly|GO:0033615||IEA go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 168 Blast hits to 168 proteins in 86 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). protein_id AT1G08220.1p transcript_id AT1G08220.1 protein_id AT1G08220.1p transcript_id AT1G08220.1
AT1G08230	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585046	AT1G08230.4 AT1G08230.4 CDS Transmembrane amino acid transporter family protein
AT1G08230	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585046	AT1G08230.5 AT1G08230.5 CDS Transmembrane amino acid transporter family protein
AT1G08230	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585046	AT1G08230.6 AT1G08230.6 CDS Transmembrane amino acid transporter family protein
AT1G08230	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585084,2586289-2586307	AT1G08230.3 AT1G08230.3 CDS Transmembrane amino acid transporter family protein
At1g08230	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585084,2586289-2586519,2586613-2586700	AT1G08230.2 CDS Transmembrane amino acid transporter family protein [TAIR10] CDS product Transmembrane amino acid transporter family protein note Transmembrane amino acid transporter family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G41800.1); Has 2686 Blast hits to 2681 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 558; Fungi - 296; Plants - 1464; Viruses - 0; Other Eukaryotes - 368 (source: NCBI BLink). protein_id AT1G08230.2p transcript_id AT1G08230.2 protein_id AT1G08230.2p transcript_id AT1G08230.2
At1g08240	chr1:002588525	0.0	W/2588525-2588596	AT1G08240.1 [TAIR10] tRNA gene_syn 51687.TRNA-GLY-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Gly (anticodon: TCC) transcript_id AT1G08240.1
At1g08250	chr1:002588994	0.0	C/2588994-2590235	AT1G08250.1 CDS arogenate dehydratase 6 [TAIR10] CDS gene_syn ADT6, T23G18.10, T23G18_10, arogenate dehydratase 6 gene ADT6 function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Although this enzyme has sequence similarity to prephenate dehydratases, it is 98 times more active with arogenate than prephenate in enzymatic assays. go_process L-phenylalanine biosynthetic process|GO:0009094||IEA go_component chloroplast|GO:0009507|19136569|IDA go_process L-phenylalanine biosynthetic process|GO:0009094||ISS go_function prephenate dehydratase activity|GO:0004664||ISS go_function arogenate dehydratase activity|GO:0047769|17726025|IDA product arogenate dehydratase 6 note arogenate dehydratase 6 (ADT6); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: prephenate dehydratase 1 (TAIR:AT2G27820.1); Has 7065 Blast hits to 7063 proteins in 2215 species: Archae - 179; Bacteria - 3948; Metazoa - 2; Fungi - 121; Plants - 264; Viruses - 0; Other Eukaryotes - 2551 (source: NCBI BLink). protein_id AT1G08250.1p transcript_id AT1G08250.1 protein_id AT1G08250.1p transcript_id AT1G08250.1
At1g08260	chr1:002590944	0.0	W/2590944-2591102,2591317-2591382,2591505-2591564,2591661-2591756,2592182-2592342,2592499-2592587,2592665-2592882,2593253-2593339,2593423-2593557,2594093-2594215,2594326-2594409,2594744-2594908,2594993-2595169,2595430-2595543,2595966-2596070,2596267-2596385,2596475-2596619,2596694-2596788,2596944-2597049,2597132-2597211,2597308-2597484,2597689-2597773,2597919-2597999,2598083-2598226,2598769-2598864,2599010-2599210,2599631-2599685,2599765-2599907,2599997-2600394,2600538-2600667,2600749-2600946,2601023-2601097,2601605-2601795,2602097-2602277,2602358-2602422,2602759-2602891,2602993-2603094,2603180-2603263,2603515-2603589,2603718-2603777,2603849-2604111,2604186-2604234,2604533-2604693,2604792-2604858,2605178-2605279,2605394-2605513,2605601-2605789,2606079-2606185,2606523-2606892	AT1G08260.1 CDS DNA polymerase epsilon catalytic subunit [TAIR10] CDS gene_syn ABA OVERLY SENSITIVE 4, ABO4, EARLY IN SHORT DAYS 7, EMB142, EMB2284, EMB529, EMBRYO DEFECTIVE 142, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 529, ESD7, POL2A, T23G18.21, T23G18_21, TIL1, TILTED 1 gene TIL1 function Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. go_component apoplast|GO:0048046|18538804|IDA go_process embryo development ending in seed dormancy|GO:0009793||IMP go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function DNA-directed DNA polymerase activity|GO:0003887||IEA go_function zinc ion binding|GO:0008270||IEA go_component epsilon DNA polymerase complex|GO:0008622|16212602|IPI go_process embryo development ending in seed dormancy|GO:0009793||NAS go_process positive regulation of S phase of mitotic cell cycle|GO:0045750|16278345|IMP go_process negative regulation of long-day photoperiodism, flowering|GO:0048579|19947980|IMP go_function DNA-directed DNA polymerase activity|GO:0003887||ISS product DNA polymerase epsilon catalytic subunit note TILTED 1 (TIL1); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of S phase of mitotic cell cycle, negative regulation of long-day photoperiodism, flowering, embryo development ending in seed dormancy; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Domain of unknown function DUF1744 (InterPro:IPR013697), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT2G27120.1); Has 2011 Blast hits to 1700 proteins in 652 species: Archae - 331; Bacteria - 603; Metazoa - 305; Fungi - 291; Plants - 83; Viruses - 58; Other Eukaryotes - 340 (source: NCBI BLink). protein_id AT1G08260.1p transcript_id AT1G08260.1 protein_id AT1G08260.1p transcript_id AT1G08260.1
AT1G08260	chr1:002590944	0.0	W/2590944-2591102,2591317-2591382,2591505-2591564,2591661-2591756,2592182-2592342,2592499-2592587,2592665-2592882,2593253-2593339,2593423-2593557,2594093-2594215,2594326-2594409,2594744-2594908,2594993-2595169,2595430-2595543,2595966-2596070,2596267-2596385,2596475-2596619,2596694-2596788,2596944-2597049,2597132-2597211,2597308-2597484,2597689-2597773,2597919-2597999,2598083-2598226,2598769-2598864,2599010-2599210,2599631-2599685,2599765-2599907,2599997-2600394,2600538-2600667,2600749-2600946,2601023-2601097,2601605-2601795,2602097-2602277,2602358-2602422,2602759-2602891,2602993-2603094,2603180-2603263,2603515-2603589,2603718-2603777,2603849-2604111,2604186-2604234,2604533-2604693,2604792-2604858,2605178-2605279,2605394-2605513,2605601-2605789,2606079-2606414	AT1G08260.2 AT1G08260.2 CDS DNA polymerase epsilon catalytic subunit
At1g08270	chr1:002606848	0.0	C/2606848-2606885,2606977-2607337	AT1G08270.2 CDS vacuolar protein sorting-associated protein [TAIR10] CDS gene_syn T23G18.12, T23G18_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08270.2p transcript_id AT1G08270.2 protein_id AT1G08270.2p transcript_id AT1G08270.2
At1g08270	chr1:002606957	0.0	C/2606957-2607337	AT1G08270.1 CDS vacuolar protein sorting-associated protein [TAIR10] CDS gene_syn T23G18.12, T23G18_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1); Has 1133 Blast hits to 1133 proteins in 252 species: Archae - 47; Bacteria - 0; Metazoa - 540; Fungi - 145; Plants - 223; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). protein_id AT1G08270.1p transcript_id AT1G08270.1 protein_id AT1G08270.1p transcript_id AT1G08270.1
At1g08280	chr1:002608408	0.0	W/2608408-2609604	AT1G08280.1 CDS Glycosyltransferase family 29 (sialyltransferase) family protein [TAIR10] CDS gene_syn T23G18.14, T23G18_14 go_component endomembrane system|GO:0012505||IEA go_component integral to Golgi membrane|GO:0030173||IEA go_process protein amino acid glycosylation|GO:0006486||IEA go_function sialyltransferase activity|GO:0008373||IEA go_component membrane|GO:0016020||ISS go_function sialyltransferase activity|GO:0008373||ISS product Glycosyltransferase family 29 (sialyltransferase) family protein note Glycosyltransferase family 29 (sialyltransferase) family protein; FUNCTIONS IN: sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, integral to Golgi membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Sialyltransferase (InterPro:IPR012163), Glycosyl transferase, family 29 (InterPro:IPR001675); Has 2035 Blast hits to 2021 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 1803; Fungi - 0; Plants - 152; Viruses - 18; Other Eukaryotes - 62 (source: NCBI BLink). protein_id AT1G08280.1p transcript_id AT1G08280.1 protein_id AT1G08280.1p transcript_id AT1G08280.1
At1g08290	chr1:002610680	0.0	C/2610680-2611105,2612593-2613180	AT1G08290.1 CDS WIP domain protein 3 [TAIR10] CDS gene_syn T23G18.15, T23G18_15, WIP domain protein 3, WIP3 gene WIP3 go_component nucleus|GO:0005634|20541552|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product WIP domain protein 3 note WIP domain protein 3 (WIP3); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 40394 Blast hits to 17903 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 38493; Fungi - 119; Plants - 685; Viruses - 0; Other Eukaryotes - 1097 (source: NCBI BLink). protein_id AT1G08290.1p transcript_id AT1G08290.1 protein_id AT1G08290.1p transcript_id AT1G08290.1
At1g08300	chr1:002614774	0.0	W/2614774-2614904,2615003-2615426,2615518-2615855,2616035-2616548,2616699-2616812,2617757-2618350,2618615-2618652,2618736-2618823	AT1G08300.1 CDS no vein-like [TAIR10] CDS gene_syn NO VEIN-LIKE, NVL, T23G18.16, T23G18_16 gene NVL go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product no vein-like note NO VEIN-LIKE (NVL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (TAIR:AT4G13750.1); Has 169 Blast hits to 140 proteins in 57 species: Archae - 2; Bacteria - 5; Metazoa - 24; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). protein_id AT1G08300.1p transcript_id AT1G08300.1 protein_id AT1G08300.1p transcript_id AT1G08300.1
AT1G08300	chr1:002615034	0.0	W/2615034-2615426,2615518-2615855,2616035-2616548,2616699-2616812,2617757-2618368	AT1G08300.2 AT1G08300.2 CDS no vein-like
AT1G08300	chr1:002615034	0.0	W/2615034-2615426,2615518-2615855,2616035-2616548,2617757-2618368	AT1G08300.3 AT1G08300.3 CDS no vein-like
At1g08310	chr1:002619134	0.0	W/2619134-2619292,2619397-2619617,2619691-2619955,2620027-2620338	AT1G08310.2 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T23G18.18, T23G18_18 go_process biological_process|GO:0008150||ND go_function catalytic activity|GO:0003824||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G44510.2); Has 1176 Blast hits to 1175 proteins in 318 species: Archae - 2; Bacteria - 667; Metazoa - 58; Fungi - 41; Plants - 314; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G08310.2p transcript_id AT1G08310.2 protein_id AT1G08310.2p transcript_id AT1G08310.2
AT1G08310	chr1:002619134	0.0	W/2619134-2619292,2619406-2619617,2619691-2619935,2620027-2620157	AT1G08310.3 AT1G08310.3 CDS alpha/beta-Hydrolases superfamily protein
At1g08310	chr1:002619134	0.0	W/2619134-2619292,2619406-2619617,2619691-2619955,2620027-2620338	AT1G08310.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T23G18.18, T23G18_18 go_process biological_process|GO:0008150||ND go_function catalytic activity|GO:0003824||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G44510.2); Has 1160 Blast hits to 1159 proteins in 335 species: Archae - 4; Bacteria - 652; Metazoa - 57; Fungi - 49; Plants - 320; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). protein_id AT1G08310.1p transcript_id AT1G08310.1 protein_id AT1G08310.1p transcript_id AT1G08310.1
At1g08315	chr1:002620500	0.0	C/2620500-2621477	AT1G08315.1 CDS ARM repeat superfamily protein [TAIR10] CDS go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 1129 Blast hits to 1121 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 8; Plants - 1079; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). protein_id AT1G08315.1p transcript_id AT1G08315.1 protein_id AT1G08315.1p transcript_id AT1G08315.1
At1g08320	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625725	AT1G08320.2 CDS bZIP transcription factor family protein [TAIR10] CDS gene_syn T23G18.22 go_component chloroplast|GO:0009507||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS product bZIP transcription factor family protein note bZIP transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08320.2p transcript_id AT1G08320.2 protein_id AT1G08320.2p transcript_id AT1G08320.2
AT1G08320	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625725	AT1G08320.5 AT1G08320.5 CDS bZIP transcription factor family protein
At1g08320	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625812,2626190-2626272,2626774-2626868,2627345-2627451	AT1G08320.1 CDS bZIP transcription factor family protein [TAIR10] CDS gene_syn T23G18.22 go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS product bZIP transcription factor family protein note bZIP transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.3); Has 1141 Blast hits to 1141 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 49; Plants - 915; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). protein_id AT1G08320.1p transcript_id AT1G08320.1 protein_id AT1G08320.1p transcript_id AT1G08320.1
At1g08320	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625812,2626190-2626272,2626774-2626868,2627345-2627451	AT1G08320.3 CDS bZIP transcription factor family protein [TAIR10] CDS gene_syn T23G18.22 go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS product bZIP transcription factor family protein note bZIP transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08320.3p transcript_id AT1G08320.3 protein_id AT1G08320.3p transcript_id AT1G08320.3
AT1G08320	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625812,2626190-2626272,2626774-2626868,2627345-2627451	AT1G08320.4 AT1G08320.4 CDS bZIP transcription factor family protein
At1g08340	chr1:002631308	0.0	W/2631308-2631432,2631530-2631770,2631857-2632087,2632271-2632669	AT1G08340.1 CDS Rho GTPase activating protein with PAK-box/P21-Rho-binding domain [TAIR10] CDS gene_syn T23G18.20, T23G18_20 go_component intracellular|GO:0005622||IEA go_process signal transduction|GO:0007165||IEA go_function Rac GTPase activator activity|GO:0030675||ISS product Rho GTPase activating protein with PAK-box/P21-Rho-binding domain note Rho GTPase activating protein with PAK-box/P21-Rho-binding domain; FUNCTIONS IN: Rac GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (TAIR:AT5G22400.1); Has 26346 Blast hits to 14360 proteins in 544 species: Archae - 23; Bacteria - 479; Metazoa - 13985; Fungi - 2813; Plants - 1188; Viruses - 517; Other Eukaryotes - 7341 (source: NCBI BLink). protein_id AT1G08340.1p transcript_id AT1G08340.1 protein_id AT1G08340.1p transcript_id AT1G08340.1
At1g08350	chr1:002632970	0.0	C/2632970-2633186,2633412-2633899,2633995-2634151,2634288-2634419,2634523-2635055	AT1G08350.1 CDS Endomembrane protein 70 protein family [TAIR10] CDS gene_syn T27G7.5, T27G7_5 go_component phragmoplast|GO:0009524|11115874|TAS go_component integral to membrane|GO:0016021||ISS go_process cellular membrane fusion|GO:0006944|11591731|IMP go_function SNAP receptor activity|GO:0005484|11591731|IPI product Endomembrane protein 70 protein family note Endomembrane protein 70 protein family; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1520 Blast hits to 1507 proteins in 318 species: Archae - 0; Bacteria - 3; Metazoa - 602; Fungi - 224; Plants - 440; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink). protein_id AT1G08350.1p transcript_id AT1G08350.1 protein_id AT1G08350.1p transcript_id AT1G08350.1
At1g08350	chr1:002632970	0.0	C/2632970-2633186,2633412-2633899,2633995-2634151,2634288-2634419,2634523-2635111,2635209-2635249,2635460-2635605	AT1G08350.2 CDS Endomembrane protein 70 protein family [TAIR10] CDS gene_syn T27G7.5, T27G7_5 go_component phragmoplast|GO:0009524|11115874|TAS go_component integral to membrane|GO:0016021||ISS go_process cellular membrane fusion|GO:0006944|11591731|IMP go_function SNAP receptor activity|GO:0005484|11591731|IPI product Endomembrane protein 70 protein family note Endomembrane protein 70 protein family; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1602 Blast hits to 1535 proteins in 321 species: Archae - 0; Bacteria - 3; Metazoa - 611; Fungi - 269; Plants - 455; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). protein_id AT1G08350.2p transcript_id AT1G08350.2 protein_id AT1G08350.2p transcript_id AT1G08350.2
AT1G08350	chr1:002632970	0.0	C/2632970-2633186,2633412-2633899,2633995-2634151,2634288-2634419,2634523-2635111,2635209-2635249,2635460-2635605	AT1G08350.3 AT1G08350.3 CDS Endomembrane protein 70 protein family
AT1G08350	chr1:002633354	0.0	C/2633354-2633899,2633995-2634151,2634288-2634419,2634523-2635111,2635209-2635249,2635460-2635605	AT1G08350.4 AT1G08350.4 CDS Endomembrane protein 70 protein family
At1g08360	chr1:002636231	0.0	W/2636231-2636235,2636648-2636867,2637087-2637252,2637435-2637694	AT1G08360.1 CDS Ribosomal protein L1p/L10e family [TAIR10] CDS gene_syn T27G7.6, T27G7_6 go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process RNA processing|GO:0006396||IEA go_process translation|GO:0006412||IEA go_function RNA binding|GO:0003723||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L1p/L10e family note Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G27530.2); Has 3821 Blast hits to 3820 proteins in 1247 species: Archae - 280; Bacteria - 1757; Metazoa - 462; Fungi - 186; Plants - 511; Viruses - 0; Other Eukaryotes - 625 (source: NCBI BLink). protein_id AT1G08360.1p transcript_id AT1G08360.1 protein_id AT1G08360.1p transcript_id AT1G08360.1
At1g08370	chr1:002638355	0.0	W/2638355-2638513,2638594-2638634,2638722-2638771,2638907-2639051,2639253-2639309,2639461-2639575,2639766-2640245,2640311-2640367	AT1G08370.1 CDS decapping 1 [TAIR10] CDS gene_syn ATDCP1, DCP1, decapping 1 gene DCP1 function Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2. go_component cytoplasmic mRNA processing body|GO:0000932|17158604|IDA go_component cytoplasmic mRNA processing body|GO:0000932|17485080|NAS go_component cytoplasm|GO:0005737|17485080|IDA go_process deadenylation-independent decapping of nuclear-transcribed mRNA|GO:0031087|17158604|IDA go_function protein homodimerization activity|GO:0042803|17485080|IPI product decapping 1 note decapping 1 (DCP1); CONTAINS InterPro DOMAIN/s: Dcp1-like decapping (InterPro:IPR010334); Has 3561 Blast hits to 2917 proteins in 377 species: Archae - 4; Bacteria - 239; Metazoa - 1310; Fungi - 561; Plants - 741; Viruses - 142; Other Eukaryotes - 564 (source: NCBI BLink). protein_id AT1G08370.1p transcript_id AT1G08370.1 protein_id AT1G08370.1p transcript_id AT1G08370.1
At1g08380	chr1:002641004	0.0	C/2641004-2641274,2641492-2641564,2641661-2641739	AT1G08380.1 CDS photosystem I subunit O [TAIR10] CDS gene_syn PSAO, PSI-O, T27G7.25, T27G7_25, photosystem I subunit O gene PSAO function Encodes subunit O of photosystem I. go_component chloroplast|GO:0009507|18431481|IDA go_component thylakoid|GO:0009579|18633119|IDA go_component photosystem I|GO:0009522|11801243|IDA go_component thylakoid|GO:0009579|11801243|IDA go_process response to salt stress|GO:0009651|11351099|IEP go_process photosynthesis, light harvesting in photosystem I|GO:0009768|11801243|IC go_function molecular_function|GO:0003674||ND product photosystem I subunit O note photosystem I subunit O (PSAO); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, photosynthesis, light harvesting in photosystem I; LOCATED IN: thylakoid, photosystem I, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I PsaO (InterPro:IPR017498); Has 161 Blast hits to 161 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G08380.1p transcript_id AT1G08380.1 protein_id AT1G08380.1p transcript_id AT1G08380.1
AT1G08390	chr1:002642220	0.0	W/2642220-2642339,2642420-2642541,2642990-2643017	AT1G08390.2 AT1G08390.2 CDS recQ-mediated genome instability-like protein
At1g08390	chr1:002642220	0.0	W/2642220-2642339,2642420-2642599,2642990-2643103	AT1G08390.1 CDS recQ-mediated genome instability-like protein [TAIR10] CDS gene_syn T27G7.27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G08390.1p transcript_id AT1G08390.1 protein_id AT1G08390.1p transcript_id AT1G08390.1
At1g08400	chr1:002643348	0.0	C/2643348-2645288,2645378-2645466,2645539-2645628,2645711-2646005	AT1G08400.1 CDS RINT-1 / TIP-1 family [TAIR10] CDS gene_syn T27G7.8, T27G7_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product RINT-1 / TIP-1 family note RINT-1 / TIP-1 family; CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: RINT-1 / TIP-1 family (TAIR:AT3G47700.1); Has 146 Blast hits to 144 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 34; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G08400.1p transcript_id AT1G08400.1 protein_id AT1G08400.1p transcript_id AT1G08400.1
At1g08410	chr1:002646307	0.0	W/2646307-2646533,2646701-2646802,2646891-2646977,2647483-2647576,2647681-2647737,2647821-2647900,2647984-2649106	AT1G08410.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn T27G7.9, T27G7_9 go_component intracellular|GO:0005622||IEA go_function GTP binding|GO:0005525||IEA go_process biological_process|GO:0008150||ND go_function GTP binding|GO:0005525||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1); Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109; Bacteria - 4700; Metazoa - 622; Fungi - 502; Plants - 285; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink). protein_id AT1G08410.1p transcript_id AT1G08410.1 protein_id AT1G08410.1p transcript_id AT1G08410.1
At1g08420	chr1:002649959	0.0	W/2649959-2650427,2650967-2651027,2651142-2651220,2651332-2651411,2651495-2651589,2651689-2651788,2651866-2651935,2652483-2652584,2652661-2652742,2652966-2653145,2653459-2653726,2653819-2654056,2654207-2654377,2654716-2654954,2655045-2655129,2655226-2655324,2655393-2655592,2655672-2655747,2656019-2656154,2656249-2656388,2656478-2656564	AT1G08420.1 CDS BRI1 suppressor 1 (BSU1)-like 2 [TAIR10] CDS gene_syn BRI1 suppressor 1 (BSU1)-like 2, BSL2, T27G7.10, T27G7_10 gene BSL2 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function phosphoprotein phosphatase activity|GO:0004721||IEA go_function iron ion binding|GO:0005506||IEA go_function hydrolase activity|GO:0016787||IEA go_function manganese ion binding|GO:0030145||IEA go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product BRI1 suppressor 1 (BSU1)-like 2 note BRI1 suppressor 1 (BSU1)-like 2 (BSL2); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Serine/threonine protein phosphatase, BSU1 (InterPro:IPR012391), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Metallophosphoesterase (InterPro:IPR004843), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: BRI1 suppressor 1 (BSU1)-like 3 (TAIR:AT2G27210.1); Has 11513 Blast hits to 9221 proteins in 570 species: Archae - 78; Bacteria - 393; Metazoa - 3912; Fungi - 1870; Plants - 2741; Viruses - 9; Other Eukaryotes - 2510 (source: NCBI BLink). protein_id AT1G08420.1p transcript_id AT1G08420.1 protein_id AT1G08420.1p transcript_id AT1G08420.1
At1g08420	chr1:002649959	0.0	W/2649959-2650427,2650967-2651027,2651142-2651220,2651332-2651411,2651495-2651589,2651689-2651788,2651866-2651935,2652483-2652584,2652661-2652742,2652981-2653145,2653459-2653726,2653819-2654056,2654207-2654377,2654716-2654954,2655045-2655129,2655226-2655324,2655393-2655592,2655672-2655747,2656019-2656154,2656249-2656388,2656478-2656564	AT1G08420.2 CDS BRI1 suppressor 1 (BSU1)-like 2 [TAIR10] CDS gene_syn BRI1 suppressor 1 (BSU1)-like 2, BSL2, T27G7.10, T27G7_10 gene BSL2 go_function phosphoprotein phosphatase activity|GO:0004721||IEA go_function iron ion binding|GO:0005506||IEA go_function hydrolase activity|GO:0016787||IEA go_function manganese ion binding|GO:0030145||IEA go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product BRI1 suppressor 1 (BSU1)-like 2 note BRI1 suppressor 1 (BSU1)-like 2 (BSL2); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, iron ion binding, phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Serine/threonine protein phosphatase, BSU1 (InterPro:IPR012391), Metallophosphoesterase (InterPro:IPR004843), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: BRI1 suppressor 1 (BSU1)-like 3 (TAIR:AT2G27210.2). protein_id AT1G08420.2p transcript_id AT1G08420.2 protein_id AT1G08420.2p transcript_id AT1G08420.2
At1g08430	chr1:002658800	0.0	W/2658800-2659010,2659133-2659273,2659407-2659679,2659774-2659895,2659983-2660126,2660439-2661029	AT1G08430.1 CDS aluminum-activated malate transporter 1 [TAIR10] CDS gene_syn ALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, ATALMT1, T27G7.11, T27G7_11, aluminum-activated malate transporter 1 gene ALMT1 function Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited). go_component cellular_component|GO:0005575||ND go_process response to aluminum ion|GO:0010044|16740662|IMP go_process response to aluminum ion|GO:0010044|17885092|IEP go_function malate transmembrane transporter activity|GO:0015140|16740662|IDA product aluminum-activated malate transporter 1 note aluminum-activated malate transporter 1 (ALMT1); CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G08440.1); Has 520 Blast hits to 518 proteins in 110 species: Archae - 0; Bacteria - 144; Metazoa - 0; Fungi - 10; Plants - 351; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). protein_id AT1G08430.1p transcript_id AT1G08430.1 protein_id AT1G08430.1p transcript_id AT1G08430.1
At1g08440	chr1:002663027	0.0	W/2663027-2663228,2663370-2663510,2663684-2663956,2664158-2664279,2664395-2664538,2664720-2665343	AT1G08440.1 CDS Aluminium activated malate transporter family protein [TAIR10] CDS gene_syn T27G7.12, T27G7_12 go_process response to aluminum ion|GO:0010044||IEA product Aluminium activated malate transporter family protein note Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 1 (TAIR:AT1G08430.1); Has 610 Blast hits to 608 proteins in 146 species: Archae - 0; Bacteria - 224; Metazoa - 0; Fungi - 10; Plants - 352; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G08440.1p transcript_id AT1G08440.1 protein_id AT1G08440.1p transcript_id AT1G08440.1
At1g08450	chr1:002668008	0.0	C/2668008-2668019,2668135-2668167,2668288-2668374,2668468-2668524,2668696-2668791,2669066-2669133,2669226-2669283,2669374-2669460,2669648-2669695,2669822-2669878,2670159-2670255,2670607-2670799,2671289-2671396,2671689-2671800	AT1G08450.2 CDS calreticulin 3 [TAIR10] CDS gene_syn A. thaliana calreticulin 3, AtCRT3, CALRETICULIN 3, CRT3, EBS2, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, PRIORITY IN SWEET LIFE 1, PSL1, T27G7.13, T27G7_13, calreticulin 3 gene CRT3 function Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the presence of elf18, and EFR accumulation and signalling. go_function calcium ion binding|GO:0005509||IEA go_function unfolded protein binding|GO:0051082||IEA go_component endoplasmic reticulum|GO:0005783|19717464|IDA go_component endoplasmic reticulum membrane|GO:0005789|19763087|IDA go_process protein folding|GO:0006457|19763087|IGI go_process plant-type hypersensitive response|GO:0009626|19763087|IMP go_process defense response signaling pathway, resistance gene-independent|GO:0010204|19717464|IMP go_process defense response to bacterium|GO:0042742|19717464|IMP go_process anthocyanin metabolic process|GO:0046283|19763087|IMP go_process calcium ion homeostasis|GO:0055074|20596537|IGI go_function calcium ion binding|GO:0005509||ISS product calreticulin 3 note calreticulin 3 (CRT3); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1a (TAIR:AT1G56340.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08450.2p transcript_id AT1G08450.2 protein_id AT1G08450.2p transcript_id AT1G08450.2
At1g08450	chr1:002668008	0.0	C/2668008-2668019,2668135-2668167,2668288-2668374,2668468-2668524,2668696-2668791,2669066-2669133,2669226-2669283,2669374-2669460,2669648-2669695,2669822-2669878,2670159-2670417,2670607-2670799,2671289-2671396,2671689-2671800	AT1G08450.1 CDS calreticulin 3 [TAIR10] CDS gene_syn A. thaliana calreticulin 3, AtCRT3, CALRETICULIN 3, CRT3, EBS2, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, PRIORITY IN SWEET LIFE 1, PSL1, T27G7.13, T27G7_13, calreticulin 3 gene CRT3 function Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the presence of elf18, and EFR accumulation and signalling. go_function calcium ion binding|GO:0005509||IEA go_function unfolded protein binding|GO:0051082||IEA go_component endoplasmic reticulum|GO:0005783|19717464|IDA go_component endoplasmic reticulum membrane|GO:0005789|19763087|IDA go_process protein folding|GO:0006457|19763087|IGI go_process plant-type hypersensitive response|GO:0009626|19763087|IMP go_process defense response signaling pathway, resistance gene-independent|GO:0010204|19717464|IMP go_process defense response to bacterium|GO:0042742|19717464|IMP go_process anthocyanin metabolic process|GO:0046283|19763087|IMP go_process calcium ion homeostasis|GO:0055074|20596537|IGI go_function calcium ion binding|GO:0005509||ISS product calreticulin 3 note calreticulin 3 (CRT3); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1b (TAIR:AT1G09210.1); Has 1183 Blast hits to 1180 proteins in 302 species: Archae - 0; Bacteria - 0; Metazoa - 620; Fungi - 150; Plants - 256; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink). protein_id AT1G08450.1p transcript_id AT1G08450.1 protein_id AT1G08450.1p transcript_id AT1G08450.1
At1g08450	chr1:002668008	0.0	C/2668008-2668019,2668135-2668167,2668288-2668374,2668468-2668524,2668696-2668791,2669066-2669133,2669391-2669460,2669648-2669695,2669822-2669878,2670159-2670417,2670607-2670799,2671289-2671396,2671689-2671800	AT1G08450.3 CDS calreticulin 3 [TAIR10] CDS gene_syn A. thaliana calreticulin 3, AtCRT3, CALRETICULIN 3, CRT3, EBS2, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, PRIORITY IN SWEET LIFE 1, PSL1, T27G7.13, T27G7_13, calreticulin 3 gene CRT3 function Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the presence of elf18, and EFR accumulation and signalling. go_function calcium ion binding|GO:0005509||IEA go_function unfolded protein binding|GO:0051082||IEA go_component endoplasmic reticulum|GO:0005783|19717464|IDA go_component endoplasmic reticulum membrane|GO:0005789|19763087|IDA go_process protein folding|GO:0006457|19763087|IGI go_process plant-type hypersensitive response|GO:0009626|19763087|IMP go_process defense response signaling pathway, resistance gene-independent|GO:0010204|19717464|IMP go_process defense response to bacterium|GO:0042742|19717464|IMP go_process anthocyanin metabolic process|GO:0046283|19763087|IMP go_process calcium ion homeostasis|GO:0055074|20596537|IGI go_function calcium ion binding|GO:0005509||ISS product calreticulin 3 note calreticulin 3 (CRT3); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1a (TAIR:AT1G56340.2). protein_id AT1G08450.3p transcript_id AT1G08450.3 protein_id AT1G08450.3p transcript_id AT1G08450.3
At1g08460	chr1:002672527	0.0	W/2672527-2672770,2672921-2673507,2674167-2674469	AT1G08460.1 CDS histone deacetylase 8 [TAIR10] CDS gene_syn ATHDA8, HDA08, HDA8, HISTONE DEACETYLASE 8, T27G7.14, T27G7_14, histone deacetylase 8 gene HDA08 go_component cellular_component|GO:0005575||ND go_process histone deacetylation|GO:0016575||ISS go_function histone deacetylase activity|GO:0004407|12466527|ISS go_function histone deacetylase activity|GO:0004407||ISS product histone deacetylase 8 note histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink). protein_id AT1G08460.1p transcript_id AT1G08460.1 protein_id AT1G08460.1p transcript_id AT1G08460.1
AT1G08460	chr1:002672527	0.0	W/2672527-2672770,2672921-2673651	AT1G08460.2 AT1G08460.2 CDS histone deacetylase 8
At1g08465	chr1:002676033	0.0	W/2676033-2676101,2678103-2678234,2678320-2678440,2678554-2678602,2678679-2678754,2679275-2679382	AT1G08465.1 CDS Plant-specific transcription factor YABBY family protein [TAIR10] CDS gene_syn T27G7.15, YAB2, YABBY2 gene YAB2 function Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs go_component cellular_component|GO:0005575||ND go_process abaxial cell fate specification|GO:0010158|10457020|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Plant-specific transcription factor YABBY family protein note YABBY2 (YAB2); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: plant-specific transcription factor YABBY family protein (TAIR:AT2G26580.2); Has 446 Blast hits to 444 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 433; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G08465.1p transcript_id AT1G08465.1 protein_id AT1G08465.1p transcript_id AT1G08465.1
At1g08470	chr1:002682262	0.0	C/2682262-2682664,2682869-2683036,2683299-2683574,2683652-2683977	AT1G08470.1 CDS strictosidine synthase-like 3 [TAIR10] CDS gene_syn SSL3, T27G7.16, T27G7_16, strictosidine synthase-like 3 gene SSL3 function Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity. go_component plasma membrane|GO:0005886|17151019|IDA go_process biosynthetic process|GO:0009058||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process alkaloid biosynthetic process|GO:0009821||ISS go_function strictosidine synthase activity|GO:0016844||ISS product strictosidine synthase-like 3 note strictosidine synthase-like 3 (SSL3); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 1252 Blast hits to 1238 proteins in 269 species: Archae - 3; Bacteria - 366; Metazoa - 225; Fungi - 17; Plants - 480; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). protein_id AT1G08470.1p transcript_id AT1G08470.1 protein_id AT1G08470.1p transcript_id AT1G08470.1
At1g08480	chr1:002684340	0.0	W/2684340-2684519,2684881-2684983,2685250-2685395	AT1G08480.1 CDS succinate dehydrogenase subunit [TAIR10] CDS gene_syn T27G7.26 go_component mitochondrion|GO:0005739|15276431|IDA go_component mitochondrion|GO:0005739|18385124|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrion|GO:0005739|16618929|IDA go_component plastid|GO:0009536|16618929|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G08480.1p transcript_id AT1G08480.1 protein_id AT1G08480.1p transcript_id AT1G08480.1
At1g08490	chr1:002685980	0.0	C/2685980-2686150,2686673-2686831,2686936-2687035,2687115-2687178,2687295-2687367,2687449-2687594,2687704-2687890,2687966-2688259,2688350-2688547	AT1G08490.1 CDS chloroplastic NIFS-like cysteine desulfurase [TAIR10] CDS gene_syn ATCPNIFS, ATNFS2, ATSUFS, CPNIFS, CYSTEINE DESULFURASE, SUFS, T27G7.17, T27G7_17, chloroplastic NIFS-like cysteine desulfurase gene CPNIFS function Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast|GO:0009507|12427997|IDA go_process selenium metabolic process|GO:0001887|12427997|IDA go_process sulfur metabolic process|GO:0006790|12427997|IDA go_process response to selenium ion|GO:0010269|16244144|IMP go_process iron incorporation into metallo-sulfur cluster|GO:0018283|15480755|IDA go_function transaminase activity|GO:0008483||ISS go_function selenocysteine lyase activity|GO:0009000|12427997|IDA go_function cysteine desulfurase activity|GO:0031071|12427997|IDA product chloroplastic NIFS-like cysteine desulfurase note chloroplastic NIFS-like cysteine desulfurase (CPNIFS); FUNCTIONS IN: transaminase activity, selenocysteine lyase activity, cysteine desulfurase activity; INVOLVED IN: iron incorporation into metallo-sulfur cluster, response to selenium ion, sulfur metabolic process, selenium metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Cysteine desulfurase, SufS (InterPro:IPR010970), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: nitrogen fixation S (NIFS)-like 1 (TAIR:AT5G65720.1); Has 22660 Blast hits to 22653 proteins in 2897 species: Archae - 350; Bacteria - 15408; Metazoa - 379; Fungi - 404; Plants - 268; Viruses - 1; Other Eukaryotes - 5850 (source: NCBI BLink). protein_id AT1G08490.1p transcript_id AT1G08490.1 protein_id AT1G08490.1p transcript_id AT1G08490.1
At1g08500	chr1:002689110	0.0	W/2689110-2689302,2689388-2689881	AT1G08500.1 CDS early nodulin-like protein 18 [TAIR10] CDS gene_syn AtENODL18, ENODL18, T27G7.18, T27G7_18, early nodulin-like protein 18 gene ENODL18 go_function copper ion binding|GO:0005507||IEA go_function electron carrier activity|GO:0009055||IEA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_function copper ion binding|GO:0005507||ISS product early nodulin-like protein 18 note early nodulin-like protein 18 (ENODL18); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT2G31050.1); Has 799 Blast hits to 788 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 799; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G08500.1p transcript_id AT1G08500.1 protein_id AT1G08500.1p transcript_id AT1G08500.1
At1g08510	chr1:002691546	0.0	C/2691546-2691866,2691957-2692128,2692356-2692469,2692697-2692830,2692912-2693409	AT1G08510.1 CDS fatty acyl-ACP thioesterases B [TAIR10] CDS gene_syn FATB, T27G7.19, T27G7_19, fatty acyl-ACP thioesterases B gene FATB function Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded, plastid-targeted globular protein that is functional as dimer. go_component plastid|GO:0009536|15531590|TAS go_process fatty acid biosynthetic process|GO:0006633|12671095|IMP go_process fatty acid biosynthetic process|GO:0006633||ISS go_function acyl carrier activity|GO:0000036|12061798|IDA go_function acyl carrier activity|GO:0000036||ISS go_function acyl-[acyl-carrier-protein] hydrolase activity|GO:0016297|12061798|IDA product fatty acyl-ACP thioesterases B note fatty acyl-ACP thioesterases B (FATB); CONTAINS InterPro DOMAIN/s: Acyl-ACP-thioesterase, N-terminal domain (InterPro:IPR021113), Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: fatA acyl-ACP thioesterase (TAIR:AT3G25110.1); Has 1275 Blast hits to 1274 proteins in 533 species: Archae - 0; Bacteria - 944; Metazoa - 0; Fungi - 0; Plants - 322; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G08510.1p transcript_id AT1G08510.1 protein_id AT1G08510.1p transcript_id AT1G08510.1
At1g08520	chr1:002696538	0.0	W/2696538-2696810,2697015-2697193,2697283-2697367,2697453-2697769,2697872-2697995,2698111-2698203,2698627-2698722,2698971-2699114,2699194-2699400,2699467-2699622,2699813-2699920,2700021-2700155,2700255-2700413,2700518-2700638,2700734-2700819	AT1G08520.1 CDS ALBINA 1 [TAIR10] CDS gene_syn ALB-1V, ALB1, ALBINA 1, CHLD, PDE166, PIGMENT DEFECTIVE EMBRYO 166, T27G7.20, T27G7_20, V157 gene ALB1 function Encodes the CHLD subunit of the Mg-chelatase enzyme involved in chlorophyll biosynthesis. Lines carrying recessive mutations of this locus are white and seedling lethal. go_component chloroplast|GO:0009507|18431481|IDA go_function nucleotide binding|GO:0000166||IEA go_function ATP binding|GO:0005524||IEA go_function magnesium chelatase activity|GO:0016851||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_component magnesium chelatase complex|GO:0010007|15815918|TAS go_process chlorophyll biosynthetic process|GO:0015995|9418040|TAS product ALBINA 1 note ALBINA 1 (ALB1); FUNCTIONS IN: magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: magnesium chelatase complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Magnesium chelatase, ChlI subunit (InterPro:IPR000523), Magnesium chelatase, ATPase subunit D (InterPro:IPR011776), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G18480.1); Has 11508 Blast hits to 8193 proteins in 1580 species: Archae - 212; Bacteria - 4110; Metazoa - 3314; Fungi - 479; Plants - 476; Viruses - 191; Other Eukaryotes - 2726 (source: NCBI BLink). protein_id AT1G08520.1p transcript_id AT1G08520.1 protein_id AT1G08520.1p transcript_id AT1G08520.1
At1g08530	chr1:002701252	0.0	W/2701252-2701593,2701692-2701742,2702262-2702395,2702581-2702681,2702807-2702952	AT1G08530.1 CDS chitinase-like protein, putative [TAIR10] CDS gene_syn T27G7.21 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G08530.1p transcript_id AT1G08530.1 protein_id AT1G08530.1p transcript_id AT1G08530.1
AT1G08530	chr1:002701252	0.0	W/2701252-2701593,2701692-2701742,2702262-2702395,2702581-2702776	AT1G08530.3 AT1G08530.3 CDS chitinase-like protein, putative
AT1G08530	chr1:002701252	0.0	W/2701252-2701593,2701692-2701742,2702262-2702441	AT1G08530.2 AT1G08530.2 CDS chitinase-like protein, putative
At1g08540	chr1:002703461	0.0	W/2703461-2703539,2704080-2704261,2704495-2705091,2705537-2705767,2705879-2706019,2706106-2706306,2706409-2706696	AT1G08540.1 CDS RNApolymerase sigma subunit 2 [TAIR10] CDS gene_syn ABC1, ATSIG1, ATSIG2, PUTATIVE PLASTID RNA POLYMERASE SIGMA-SUBUNIT, RNA POLYMERASE SIGMA SUBUNIT 1, RNApolymerase sigma subunit 2, SIG1, SIG2, SIGA, SIGB, SIGMA FACTOR 1, SIGMA FACTOR 2, SIGMA FACTOR B, T27G7.22 gene SIG2 function Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light. go_component chloroplast|GO:0009507|10555304|IDA go_process transcription initiation|GO:0006352|9280303|TAS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to blue light|GO:0009637|18532976|IGI go_process response to red light|GO:0010114|18532976|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function DNA-directed RNA polymerase activity|GO:0003899||ISS go_function sigma factor activity|GO:0016987|9280303|ISS product RNApolymerase sigma subunit 2 note RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). protein_id AT1G08540.1p transcript_id AT1G08540.1 protein_id AT1G08540.1p transcript_id AT1G08540.1
At1g08550	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.1 CDS non-photochemical quenching 1 [TAIR10] CDS gene_syn ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, AVDE1, F22O13.3, F22O13_3, NPQ1, VIOLAXANTHIN DE-EPOXIDASE PRECURSOR, non-photochemical quenching 1 gene NPQ1 function Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex go_component chloroplast|GO:0009507|18431481|IDA go_component thylakoid lumen|GO:0031977|11719511|IDA go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS go_component chloroplast photosystem II|GO:0030095|11058750|TAS go_process fatty acid metabolic process|GO:0006631|16258032|IGI go_process response to heat|GO:0009408|15923322|IMP go_process xanthophyll cycle|GO:0010028|10588066|IMP go_process chlorophyll metabolic process|GO:0015994|16258032|IGI go_process xanthophyll metabolic process|GO:0016122|11058750|TAS go_function violaxanthin de-epoxidase activity|GO:0046422|10588066|IMP product non-photochemical quenching 1 note non-photochemical quenching 1 (NPQ1); FUNCTIONS IN: violaxanthin de-epoxidase activity; INVOLVED IN: fatty acid metabolic process, response to heat, chlorophyll metabolic process, xanthophyll metabolic process, xanthophyll cycle; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast photosystem II, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin conserved site (InterPro:IPR022272), Calycin (InterPro:IPR012674), Violaxanthin de-epoxidase (InterPro:IPR010788), Calycin-like (InterPro:IPR011038); BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1); Has 258 Blast hits to 254 proteins in 55 species: Archae - 0; Bacteria - 9; Metazoa - 2; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G08550.1p transcript_id AT1G08550.1 protein_id AT1G08550.1p transcript_id AT1G08550.1
At1g08550	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.2 CDS non-photochemical quenching 1 [TAIR10] CDS gene_syn ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, AVDE1, F22O13.3, F22O13_3, NPQ1, VIOLAXANTHIN DE-EPOXIDASE PRECURSOR, non-photochemical quenching 1 gene NPQ1 function Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS go_component chloroplast photosystem II|GO:0030095|11058750|TAS go_process fatty acid metabolic process|GO:0006631|16258032|IGI go_process response to heat|GO:0009408|15923322|IMP go_process xanthophyll cycle|GO:0010028|10588066|IMP go_process chlorophyll metabolic process|GO:0015994|16258032|IGI go_process xanthophyll metabolic process|GO:0016122|11058750|TAS go_function violaxanthin de-epoxidase activity|GO:0046422|10588066|IMP product non-photochemical quenching 1 note non-photochemical quenching 1 (NPQ1); FUNCTIONS IN: violaxanthin de-epoxidase activity; INVOLVED IN: fatty acid metabolic process, response to heat, chlorophyll metabolic process, xanthophyll metabolic process, xanthophyll cycle; LOCATED IN: chloroplast thylakoid lumen, chloroplast photosystem II, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin conserved site (InterPro:IPR022272), Calycin (InterPro:IPR012674), Violaxanthin de-epoxidase (InterPro:IPR010788), Calycin-like (InterPro:IPR011038); BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08550.2p transcript_id AT1G08550.2 protein_id AT1G08550.2p transcript_id AT1G08550.2
AT1G08550	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.3 AT1G08550.3 CDS non-photochemical quenching 1
At1g08560	chr1:002709778	0.0	C/2709778-2710710	AT1G08560.1 CDS syntaxin of plants 111 [TAIR10] CDS gene_syn ATSYP111, F22O13.4, F22O13_4, KN, KNOLLE, SYP111, syntaxin of plants 111 gene SYP111 function member of SYP11 syntaxin Gene Family go_component plasma membrane|GO:0005886|17644812|IDA go_component cell plate|GO:0009504|19959995|IDA go_component phragmoplast|GO:0009524|8548827|IDA go_component phragmoplast|GO:0009524|9396754|IDA go_component endomembrane system|GO:0012505|19959995|IDA go_process intracellular protein transport|GO:0006886|11115874|TAS go_process cellular membrane fusion|GO:0006944|11115874|TAS go_process response to cyclopentenone|GO:0010583|18334669|IEP go_function SNAP receptor activity|GO:0005484|11115874|TAS product syntaxin of plants 111 note syntaxin of plants 111 (SYP111); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, response to cyclopentenone, cellular membrane fusion; LOCATED IN: endomembrane system, plasma membrane, phragmoplast, cell plate; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2504 Blast hits to 2496 proteins in 285 species: Archae - 12; Bacteria - 41; Metazoa - 1133; Fungi - 466; Plants - 469; Viruses - 2; Other Eukaryotes - 381 (source: NCBI BLink). protein_id AT1G08560.1p transcript_id AT1G08560.1 protein_id AT1G08560.1p transcript_id AT1G08560.1
At1g08570	chr1:002713059	0.0	W/2713059-2713142,2713236-2713295,2713547-2713723,2713809-2713973,2714064-2714312	AT1G08570.2 CDS atypical CYS HIS rich thioredoxin 4 [TAIR10] CDS gene_syn ACHT4, atypical CYS HIS rich thioredoxin 4 gene ACHT4 function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase. go_process cell redox homeostasis|GO:0045454||IEA go_component chloroplast|GO:0009507|19109414|IDA go_component chloroplast stroma|GO:0009570|19109414|IDA go_component chloroplast membrane|GO:0031969|19109414|IDA go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA product atypical CYS HIS rich thioredoxin 4 note atypical CYS HIS rich thioredoxin 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1); Has 2537 Blast hits to 2529 proteins in 580 species: Archae - 19; Bacteria - 606; Metazoa - 627; Fungi - 356; Plants - 522; Viruses - 3; Other Eukaryotes - 404 (source: NCBI BLink). protein_id AT1G08570.2p transcript_id AT1G08570.2 protein_id AT1G08570.2p transcript_id AT1G08570.2
At1g08570	chr1:002713059	0.0	W/2713059-2713295,2713547-2713723,2713809-2713973,2714064-2714312	AT1G08570.1 CDS atypical CYS HIS rich thioredoxin 4 [TAIR10] CDS gene_syn ACHT4, atypical CYS HIS rich thioredoxin 4 gene ACHT4 function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase. go_process cell redox homeostasis|GO:0045454||IEA go_component chloroplast|GO:0009507|19109414|IDA go_component chloroplast stroma|GO:0009570|19109414|IDA go_component chloroplast membrane|GO:0031969|19109414|IDA go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA product atypical CYS HIS rich thioredoxin 4 note atypical CYS HIS rich thioredoxin 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1); Has 2532 Blast hits to 2524 proteins in 582 species: Archae - 19; Bacteria - 596; Metazoa - 625; Fungi - 365; Plants - 524; Viruses - 3; Other Eukaryotes - 400 (source: NCBI BLink). protein_id AT1G08570.1p transcript_id AT1G08570.1 protein_id AT1G08570.1p transcript_id AT1G08570.1
At1g08570	chr1:002713604	0.0	W/2713604-2713723,2713809-2713973,2714064-2714312	AT1G08570.3 CDS atypical CYS HIS rich thioredoxin 4 [TAIR10] CDS gene_syn ACHT4, atypical CYS HIS rich thioredoxin 4 gene ACHT4 function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase. go_process cell redox homeostasis|GO:0045454||IEA go_component chloroplast|GO:0009507|19109414|IDA go_component chloroplast stroma|GO:0009570|19109414|IDA go_component chloroplast membrane|GO:0031969|19109414|IDA go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA product atypical CYS HIS rich thioredoxin 4 note atypical CYS HIS rich thioredoxin 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G08570.3p transcript_id AT1G08570.3 protein_id AT1G08570.3p transcript_id AT1G08570.3
At1g08570	chr1:002713604	0.0	W/2713604-2713723,2713809-2713973,2714064-2714312	AT1G08570.4 CDS atypical CYS HIS rich thioredoxin 4 [TAIR10] CDS gene_syn ACHT4, atypical CYS HIS rich thioredoxin 4 gene ACHT4 function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase. go_process cell redox homeostasis|GO:0045454||IEA go_component chloroplast|GO:0009507|19109414|IDA go_component chloroplast stroma|GO:0009570|19109414|IDA go_component chloroplast membrane|GO:0031969|19109414|IDA go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA product atypical CYS HIS rich thioredoxin 4 note atypical CYS HIS rich thioredoxin 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G08570.4p transcript_id AT1G08570.4 protein_id AT1G08570.4p transcript_id AT1G08570.4
At1g08580	chr1:002715296	0.0	C/2715296-2715357,2715474-2715554,2715943-2716009,2716190-2716351	AT1G08580.1 CDS hypothetical protein [TAIR10] CDS gene_syn F22O13.6, F22O13_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G08580.1p transcript_id AT1G08580.1 protein_id AT1G08580.1p transcript_id AT1G08580.1
At1g08590	chr1:002718859	0.0	W/2718859-2721948	AT1G08590.1 CDS Leucine-rich receptor-like protein kinase family protein [TAIR10] CDS gene_syn F22O13.7, F22O13_7 function similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888) go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301||ISS product Leucine-rich receptor-like protein kinase family protein note Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT4G28650.1); Has 238620 Blast hits to 145276 proteins in 3605 species: Archae - 165; Bacteria - 22033; Metazoa - 74123; Fungi - 11983; Plants - 100762; Viruses - 458; Other Eukaryotes - 29096 (source: NCBI BLink). protein_id AT1G08590.1p transcript_id AT1G08590.1 protein_id AT1G08590.1p transcript_id AT1G08590.1
At1g08592	chr1:002718875	0.0	C/2718875-2720202,2721391-2721676	AT1G08592.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G08590 product other RNA transcript_id AT1G08592.1
At1g08600	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729641,2730002-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn ATRX, CHR20, F22O13.8, F22O13_8 gene ATRX go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function DNA binding|GO:0003677||ISS go_function helicase activity|GO:0004386||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). protein_id AT1G08600.2p transcript_id AT1G08600.2 protein_id AT1G08600.2p transcript_id AT1G08600.2
At1g08600	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729641,2730002-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn ATRX, CHR20, F22O13.8, F22O13_8 gene ATRX go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function DNA binding|GO:0003677||ISS go_function helicase activity|GO:0004386||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note ATRX; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). protein_id AT1G08600.3p transcript_id AT1G08600.3 protein_id AT1G08600.3p transcript_id AT1G08600.3
At1g08600	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729641,2730002-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.4 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn ATRX, CHR20, F22O13.8, F22O13_8 gene ATRX go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function DNA binding|GO:0003677||ISS go_function helicase activity|GO:0004386||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). protein_id AT1G08600.4p transcript_id AT1G08600.4 protein_id AT1G08600.4p transcript_id AT1G08600.4
At1g08600	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729671,2730095-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn ATRX, CHR20, F22O13.8, F22O13_8 gene ATRX go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function DNA binding|GO:0003677||ISS go_function helicase activity|GO:0004386||ISS go_function ATP binding|GO:0005524||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note ATRX; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 31658 Blast hits to 23484 proteins in 2032 species: Archae - 346; Bacteria - 7271; Metazoa - 9089; Fungi - 4970; Plants - 2206; Viruses - 434; Other Eukaryotes - 7342 (source: NCBI BLink). protein_id AT1G08600.1p transcript_id AT1G08600.1 protein_id AT1G08600.1p transcript_id AT1G08600.1
At1g08610	chr1:002733788	0.0	C/2733788-2735467	AT1G08610.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F22O13.9, F22O13_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 46651 Blast hits to 12655 proteins in 271 species: Archae - 5; Bacteria - 25; Metazoa - 357; Fungi - 448; Plants - 44319; Viruses - 0; Other Eukaryotes - 1497 (source: NCBI BLink). protein_id AT1G08610.1p transcript_id AT1G08610.1 protein_id AT1G08610.1p transcript_id AT1G08610.1
AT1G08620	chr1:002737512	0.0	W/2737512-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.3 AT1G08620.3 CDS Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
At1g08620	chr1:002737554	0.0	W/2737554-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.1 CDS Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [TAIR10] CDS gene_syn F22O13.10, F22O13_10, PKDM7D gene PKDM7D go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein note PKDM7D; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2); Has 2173 Blast hits to 1649 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 1159; Fungi - 446; Plants - 392; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink). protein_id AT1G08620.1p transcript_id AT1G08620.1 protein_id AT1G08620.1p transcript_id AT1G08620.1
At1g08620	chr1:002737554	0.0	W/2737554-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.2 CDS Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [TAIR10] CDS gene_syn F22O13.10, F22O13_10, PKDM7D gene PKDM7D go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein note PKDM7D; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2). protein_id AT1G08620.2p transcript_id AT1G08620.2 protein_id AT1G08620.2p transcript_id AT1G08620.2
AT1G08620	chr1:002737554	0.0	W/2737554-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.4 AT1G08620.4 CDS Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744491,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.5 CDS threonine aldolase 1 [TAIR10] CDS gene_syn F22O13.11, F22O13_11, THA1, threonine aldolase 1 gene THA1 function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. go_component cellular_component|GO:0005575||ND go_process threonine catabolic process|GO:0006567|17172352|IMP go_function threonine aldolase activity|GO:0004793|17172352|IDA go_function aldehyde-lyase activity|GO:0016832||ISS product threonine aldolase 1 note threonine aldolase 1 (THA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.2); Has 3797 Blast hits to 3793 proteins in 1149 species: Archae - 25; Bacteria - 2286; Metazoa - 91; Fungi - 253; Plants - 87; Viruses - 0; Other Eukaryotes - 1055 (source: NCBI BLink). protein_id AT1G08630.5p transcript_id AT1G08630.5 protein_id AT1G08630.5p transcript_id AT1G08630.5
AT1G08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745628	AT1G08630.7 AT1G08630.7 CDS threonine aldolase 1
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.1 CDS threonine aldolase 1 [TAIR10] CDS gene_syn F22O13.11, F22O13_11, THA1, threonine aldolase 1 gene THA1 function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. go_component cellular_component|GO:0005575||ND go_process threonine catabolic process|GO:0006567|17172352|IMP go_function threonine aldolase activity|GO:0004793|17172352|IDA go_function aldehyde-lyase activity|GO:0016832||ISS product threonine aldolase 1 note threonine aldolase 1 (THA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1); Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29; Bacteria - 2521; Metazoa - 93; Fungi - 250; Plants - 87; Viruses - 0; Other Eukaryotes - 1127 (source: NCBI BLink). protein_id AT1G08630.1p transcript_id AT1G08630.1 protein_id AT1G08630.1p transcript_id AT1G08630.1
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.2 CDS threonine aldolase 1 [TAIR10] CDS gene_syn F22O13.11, F22O13_11, THA1, threonine aldolase 1 gene THA1 function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. go_component cellular_component|GO:0005575||ND go_process threonine catabolic process|GO:0006567|17172352|IMP go_function threonine aldolase activity|GO:0004793|17172352|IDA go_function aldehyde-lyase activity|GO:0016832||ISS product threonine aldolase 1 note threonine aldolase 1 (THA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1); Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29; Bacteria - 2521; Metazoa - 93; Fungi - 250; Plants - 87; Viruses - 0; Other Eukaryotes - 1127 (source: NCBI BLink). protein_id AT1G08630.2p transcript_id AT1G08630.2 protein_id AT1G08630.2p transcript_id AT1G08630.2
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.3 CDS threonine aldolase 1 [TAIR10] CDS gene_syn F22O13.11, F22O13_11, THA1, threonine aldolase 1 gene THA1 function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. go_component cellular_component|GO:0005575||ND go_process threonine catabolic process|GO:0006567|17172352|IMP go_function threonine aldolase activity|GO:0004793|17172352|IDA go_function aldehyde-lyase activity|GO:0016832||ISS product threonine aldolase 1 note threonine aldolase 1 (THA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1); Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29; Bacteria - 2521; Metazoa - 93; Fungi - 250; Plants - 87; Viruses - 0; Other Eukaryotes - 1127 (source: NCBI BLink). protein_id AT1G08630.3p transcript_id AT1G08630.3 protein_id AT1G08630.3p transcript_id AT1G08630.3
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.4 CDS threonine aldolase 1 [TAIR10] CDS gene_syn F22O13.11, F22O13_11, THA1, threonine aldolase 1 gene THA1 function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. go_component cellular_component|GO:0005575||ND go_process threonine catabolic process|GO:0006567|17172352|IMP go_function threonine aldolase activity|GO:0004793|17172352|IDA go_function aldehyde-lyase activity|GO:0016832||ISS product threonine aldolase 1 note threonine aldolase 1 (THA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1); Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29; Bacteria - 2521; Metazoa - 93; Fungi - 250; Plants - 87; Viruses - 0; Other Eukaryotes - 1127 (source: NCBI BLink). protein_id AT1G08630.4p transcript_id AT1G08630.4 protein_id AT1G08630.4p transcript_id AT1G08630.4
AT1G08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.6 AT1G08630.6 CDS threonine aldolase 1
At1g08640	chr1:002748714	0.0	C/2748714-2748776,2749191-2749262,2749482-2749577,2749676-2749801,2750019-2750076,2750170-2750225,2750315-2750392,2750489-2750593,2750679-2750778,2751079-2751209	AT1G08640.1 CDS Chloroplast J-like domain 1 [TAIR10] CDS gene_syn CJD1, Chloroplast J-like domain 1, F22O13.12, F22O13_12 gene CJD1 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA product Chloroplast J-like domain 1 note Chloroplast J-like domain 1 (CJD1); LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 82 Blast hits to 80 proteins in 30 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G08640.1p transcript_id AT1G08640.1 protein_id AT1G08640.1p transcript_id AT1G08640.1
AT1G08645	chr1:002751813	0.0	C/2751813-2751830,2751942-2752007,2752251-2752595	AT1G08645.1 AT1G08645.1 CDS hypothetical protein
At1g08650	chr1:002752206	0.0	W/2752206-2753010,2753125-2753150	AT1G08650.2 CDS phosphoenolpyruvate carboxylase kinase 1 [TAIR10] CDS gene_syn ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 gene PPCK1 function Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. go_process protein amino acid phosphorylation|GO:0006468||IEA go_component cellular_component|GO:0005575||ND go_function protein serine/threonine kinase activity|GO:0004674|10571893|IDA go_function kinase activity|GO:0016301||ISS product phosphoenolpyruvate carboxylase kinase 1 note phosphoenolpyruvate carboxylase kinase 1 (PPCK1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase kinase 2 (TAIR:AT3G04530.1). protein_id AT1G08650.2p transcript_id AT1G08650.2 protein_id AT1G08650.2p transcript_id AT1G08650.2
At1g08650	chr1:002752206	0.0	W/2752206-2753010,2753183-2753232	AT1G08650.1 CDS phosphoenolpyruvate carboxylase kinase 1 [TAIR10] CDS gene_syn ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 gene PPCK1 function Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. go_process protein amino acid phosphorylation|GO:0006468||IEA go_component cellular_component|GO:0005575||ND go_function protein serine/threonine kinase activity|GO:0004674|10571893|IDA go_function kinase activity|GO:0016301||ISS product phosphoenolpyruvate carboxylase kinase 1 note phosphoenolpyruvate carboxylase kinase 1 (PPCK1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase kinase 2 (TAIR:AT3G04530.1); Has 121330 Blast hits to 119354 proteins in 3292 species: Archae - 175; Bacteria - 14755; Metazoa - 43495; Fungi - 13131; Plants - 28233; Viruses - 522; Other Eukaryotes - 21019 (source: NCBI BLink). protein_id AT1G08650.1p transcript_id AT1G08650.1 protein_id AT1G08650.1p transcript_id AT1G08650.1
At1g08660	chr1:002757116	0.0	C/2757116-2757514,2757602-2757683,2757805-2757953,2758134-2758192,2758319-2758409,2758531-2758732,2758817-2758908,2758988-2759065,2759159-2759245,2759406-2759485,2759572-2759677	AT1G08660.1 CDS MALE GAMETOPHYTE DEFECTIVE 2 [TAIR10] CDS gene_syn F22O13.14, F22O13_14, MALE GAMETOPHYTE DEFECTIVE 2, MGP2 gene MGP2 go_process protein amino acid glycosylation|GO:0006486||IEA go_component Golgi apparatus|GO:0005794|16618929|IDA go_component membrane|GO:0016020||ISS go_function sialyltransferase activity|GO:0008373||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product MALE GAMETOPHYTE DEFECTIVE 2 note MALE GAMETOPHYTE DEFECTIVE 2 (MGP2); FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 29 (sialyltransferase) family protein (TAIR:AT3G48820.1); Has 1529 Blast hits to 1526 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 1325; Fungi - 0; Plants - 155; Viruses - 13; Other Eukaryotes - 36 (source: NCBI BLink). protein_id AT1G08660.1p transcript_id AT1G08660.1 protein_id AT1G08660.1p transcript_id AT1G08660.1
At1g08660	chr1:002757584	0.0	C/2757584-2757683,2757805-2757953,2758134-2758192,2758319-2758409,2758531-2758732,2758817-2758908,2758988-2759065,2759159-2759245,2759406-2759485,2759572-2759677	AT1G08660.2 CDS MALE GAMETOPHYTE DEFECTIVE 2 [TAIR10] CDS gene_syn F22O13.14, F22O13_14, MALE GAMETOPHYTE DEFECTIVE 2, MGP2 gene MGP2 go_process protein amino acid glycosylation|GO:0006486||IEA go_component Golgi apparatus|GO:0005794|16618929|IDA go_component membrane|GO:0016020||ISS go_function sialyltransferase activity|GO:0008373||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product MALE GAMETOPHYTE DEFECTIVE 2 note MALE GAMETOPHYTE DEFECTIVE 2 (MGP2); FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 29 (sialyltransferase) family protein (TAIR:AT3G48820.1); Has 1514 Blast hits to 1511 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 1320; Fungi - 0; Plants - 145; Viruses - 13; Other Eukaryotes - 36 (source: NCBI BLink). protein_id AT1G08660.2p transcript_id AT1G08660.2 protein_id AT1G08660.2p transcript_id AT1G08660.2
AT1G08660	chr1:002757584	0.0	C/2757584-2757683,2757805-2757953,2758134-2758192,2758319-2758409,2758531-2758732,2758817-2758908,2758988-2759065,2759159-2759278	AT1G08660.3 AT1G08660.3 CDS MALE GAMETOPHYTE DEFECTIVE 2
AT1G08670	chr1:002760419	0.0	C/2760419-2760872,2761127-2761197	AT1G08670.2 AT1G08670.2 CDS ENTH/VHS family protein
At1g08670	chr1:002760419	0.0	C/2760419-2760872,2761127-2761249,2761433-2761551	AT1G08670.1 CDS ENTH/VHS family protein [TAIR10] CDS gene_syn F22O13.15, F22O13_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function binding|GO:0005488||ISS product ENTH/VHS family protein note ENTH/VHS family protein; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G46540.1); Has 902 Blast hits to 902 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 217; Plants - 109; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). protein_id AT1G08670.1p transcript_id AT1G08670.1 protein_id AT1G08670.1p transcript_id AT1G08670.1
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765200,2765327-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.3 CDS ARF GAP-like zinc finger-containing protein ZIGA4 [TAIR10] CDS gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZIGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4 gene ZIGA4 function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15. go_component plasma membrane|GO:0005886|17317660|IDA go_process regulation of ARF GTPase activity|GO:0032312||IEA go_function ARF GTPase activator activity|GO:0008060||IEA go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634||ISS go_function DNA binding|GO:0003677||ISS product ARF GAP-like zinc finger-containing protein ZIGA4 note ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08680.3p transcript_id AT1G08680.3 protein_id AT1G08680.3p transcript_id AT1G08680.3
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766506-2766643,2766720-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.4 CDS ARF GAP-like zinc finger-containing protein ZIGA4 [TAIR10] CDS gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZIGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4 gene ZIGA4 function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15. go_process regulation of ARF GTPase activity|GO:0032312||IEA go_function ARF GTPase activator activity|GO:0008060||IEA go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634||ISS go_function DNA binding|GO:0003677||ISS product ARF GAP-like zinc finger-containing protein ZIGA4 note ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2). protein_id AT1G08680.4p transcript_id AT1G08680.4 protein_id AT1G08680.4p transcript_id AT1G08680.4
AT1G08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767404-2767421	AT1G08680.5 AT1G08680.5 CDS ARF GAP-like zinc finger-containing protein ZIGA4
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.1 CDS ARF GAP-like zinc finger-containing protein ZIGA4 [TAIR10] CDS gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZIGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4 gene ZIGA4 function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15. go_component plasma membrane|GO:0005886|17317660|IDA go_process regulation of ARF GTPase activity|GO:0032312||IEA go_function ARF GTPase activator activity|GO:0008060||IEA go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634||ISS go_function DNA binding|GO:0003677||ISS product ARF GAP-like zinc finger-containing protein ZIGA4 note ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0; Bacteria - 4; Metazoa - 1486; Fungi - 545; Plants - 477; Viruses - 2; Other Eukaryotes - 974 (source: NCBI BLink). protein_id AT1G08680.1p transcript_id AT1G08680.1 protein_id AT1G08680.1p transcript_id AT1G08680.1
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766509-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.2 CDS ARF GAP-like zinc finger-containing protein ZIGA4 [TAIR10] CDS gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZIGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4 gene ZIGA4 function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15. go_component plasma membrane|GO:0005886|17317660|IDA go_process regulation of ARF GTPase activity|GO:0032312||IEA go_function ARF GTPase activator activity|GO:0008060||IEA go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634||ISS go_function DNA binding|GO:0003677||ISS product ARF GAP-like zinc finger-containing protein ZIGA4 note ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 3491 Blast hits to 2950 proteins in 241 species: Archae - 0; Bacteria - 7; Metazoa - 1485; Fungi - 538; Plants - 477; Viruses - 2; Other Eukaryotes - 982 (source: NCBI BLink). protein_id AT1G08680.2p transcript_id AT1G08680.2 protein_id AT1G08680.2p transcript_id AT1G08680.2
At1g08695	chr1:002769056	0.0	C/2769056-2769252,2769414-2769483	AT1G08695.1 CDS SCR-like 3 [TAIR10] CDS gene_syn SCR-like 3, SCRL3 gene SCRL3 function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). go_component endomembrane system|GO:0012505||IEA go_process signal transduction|GO:0007165||IEA product SCR-like 3 note SCR-like 3 (SCRL3); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCR-like 1 (TAIR:AT4G10457.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08695.1p transcript_id AT1G08695.1 protein_id AT1G08695.1p transcript_id AT1G08695.1
At1g08700	chr1:002769885	0.0	C/2769885-2770924,2771027-2771348	AT1G08700.1 CDS Presenilin-1 [TAIR10] CDS gene_syn F22O13.18, F22O13_18, PS1, Presenilin-1 gene PS1 function Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation. go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process intracellular signaling pathway|GO:0023034||IEA go_component membrane|GO:0016020||ISS go_process intracellular signaling pathway|GO:0023034||ISS product Presenilin-1 note Presenilin-1 (PS1); INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22A, presenilin (InterPro:IPR001108); BEST Arabidopsis thaliana protein match is: Presenilin-2 (TAIR:AT2G29900.1); Has 596 Blast hits to 445 proteins in 109 species: Archae - 4; Bacteria - 0; Metazoa - 417; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). protein_id AT1G08700.1p transcript_id AT1G08700.1 protein_id AT1G08700.1p transcript_id AT1G08700.1
At1g08710	chr1:002771720	0.0	W/2771720-2771955,2772044-2772217,2772444-2772606,2772697-2772895,2773198-2773250	AT1G08710.1 CDS F-box family protein [TAIR10] CDS gene_syn F22O13.19, F22O13_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product F-box family protein note F-box family protein; Has 132 Blast hits to 132 proteins in 42 species: Archae - 3; Bacteria - 4; Metazoa - 68; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G08710.1p transcript_id AT1G08710.1 protein_id AT1G08710.1p transcript_id AT1G08710.1
At1g08710	chr1:002771720	0.0	W/2771720-2771955,2772044-2772217,2772444-2772606,2772697-2773011	AT1G08710.2 CDS F-box family protein [TAIR10] CDS gene_syn F22O13.19, F22O13_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product F-box family protein note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 110 Blast hits to 110 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 49; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G08710.2p transcript_id AT1G08710.2 protein_id AT1G08710.2p transcript_id AT1G08710.2
At1g08720	chr1:002774089	0.0	W/2774089-2774499,2774851-2775273,2775519-2775622,2775708-2776801,2777040-2777080,2777597-2777665,2777806-2777906,2777998-2778076,2778168-2778266,2778362-2778430,2778555-2778604,2778737-2778913,2778993-2779077	AT1G08720.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn ATEDR1, EDR1, ENHANCED DISEASE RESISTANCE 1, F22O13.20, F22O13_20, MAPKK KINASE EDR1 gene EDR1 function enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearum go_process MAPKKK cascade|GO:0000165|11114160|ISS go_process cell death|GO:0008219|15894742|IMP go_process response to water deprivation|GO:0009414|15894742|IMP go_process response to bacterium|GO:0009617|16565218|IMP go_process response to fungus|GO:0009620|11114160|IMP go_process response to ethylene stimulus|GO:0009723|15894742|IMP go_process protein amino acid autophosphorylation|GO:0046777|12492839|IDA go_function MAP kinase kinase kinase activity|GO:0004709|11114160|IMP go_function MAP kinase kinase kinase activity|GO:0004709|11114160|ISS go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS go_function kinase activity|GO:0016301|12492839|IDA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note ENHANCED DISEASE RESISTANCE 1 (EDR1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, MAP kinase kinase kinase activity, kinase activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1); Has 120792 Blast hits to 119043 proteins in 4682 species: Archae - 98; Bacteria - 12672; Metazoa - 46002; Fungi - 10646; Plants - 32815; Viruses - 475; Other Eukaryotes - 18084 (source: NCBI BLink). protein_id AT1G08720.1p transcript_id AT1G08720.1 protein_id AT1G08720.1p transcript_id AT1G08720.1
AT1G08720	chr1:002774089	0.0	W/2774089-2774499,2774851-2775273,2775519-2775622,2775708-2776801,2777040-2777080,2777597-2777665,2777806-2777906,2777998-2778076,2778168-2778266,2778362-2778430,2778555-2778604,2778737-2778917	AT1G08720.2 AT1G08720.2 CDS Protein kinase superfamily protein
AT1G08730	chr1:002779963	0.0	W/2779963-2779965,2780133-2780261,2780355-2780498,2780581-2780726,2780822-2780978,2781072-2781130,2781214-2781373,2781446-2781595,2781697-2781833,2781908-2782054,2782139-2782240,2782317-2782374,2782446-2782547,2782650-2782687,2782772-2782898,2782973-2783143,2783298-2783429,2783565-2783674,2783767-2783827,2783948-2784125,2784240-2784445,2784534-2784653,2784950-2785048,2785128-2785349,2785464-2785603,2785709-2785820,2785917-2785964,2786057-2786311,2786400-2786555,2786659-2786865,2786953-2787096,2787182-2787252,2787356-2787455,2787526-2787582,2787662-2787718,2787867-2787947,2788045-2788127,2788202-2788325	AT1G08730.2 AT1G08730.2 CDS Myosin family protein with Dil domain
At1g08730	chr1:002779963	0.0	W/2779963-2780014,2780158-2780261,2780355-2780498,2780581-2780726,2780822-2780978,2781072-2781130,2781214-2781373,2781446-2781595,2781697-2781833,2781908-2782054,2782139-2782240,2782317-2782374,2782446-2782547,2782650-2782687,2782772-2782898,2782973-2783143,2783298-2783429,2783565-2783674,2783767-2783827,2783948-2784125,2784240-2784445,2784534-2784653,2784950-2785048,2785128-2785349,2785464-2785603,2785709-2785820,2785917-2785964,2786057-2786311,2786400-2786555,2786659-2786865,2786953-2787096,2787182-2787252,2787356-2787455,2787526-2787582,2787662-2787718,2787867-2787947,2788045-2788127,2788202-2788325	AT1G08730.1 CDS Myosin family protein with Dil domain [TAIR10] CDS gene_syn ATXIC, F22O13.200, F22O13_200, MYOSIN XI C, XIC gene XIC function Class XI myosin gene go_component myosin complex|GO:0016459|7811972|ISS go_component myosin complex|GO:0016459||ISS go_process actin filament-based movement|GO:0030048|11516337|TAS go_function motor activity|GO:0003774|11516337|ISS go_function motor activity|GO:0003774||ISS product Myosin family protein with Dil domain note XIC; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 57567 Blast hits to 36765 proteins in 2556 species: Archae - 784; Bacteria - 7621; Metazoa - 29049; Fungi - 4176; Plants - 2435; Viruses - 163; Other Eukaryotes - 13339 (source: NCBI BLink). protein_id AT1G08730.1p transcript_id AT1G08730.1 protein_id AT1G08730.1p transcript_id AT1G08730.1
At1g08735	chr1:002790290	0.0	W/2790290-2793641	AT1G08735.1 [TAIR10] mRNA
At1g08735	chr1:002790290	0.0	W/2790290-2793641	AT1G08735 [TAIR10] TE pseudo gene_syn F22O13.21, F22O13_21 note Transposable element gene, Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)
At1g08740	chr1:002795643	0.0	C/2795643-2796251,2796349-2796433,2796511-2796617,2797033-2797113,2797192-2797305,2797387-2797914,2797996-2798661,2799227-2800081	AT1G08740.1 [TAIR10] mRNA
At1g08740	chr1:002795643	0.0	C/2795643-2800081	AT1G08740 [TAIR10] TE pseudo gene_syn F22O13.23, F22O13_23 note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
At1g08750	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.1 CDS Peptidase C13 family [TAIR10] CDS gene_syn F22O13.24, F22O13_24 go_component endomembrane system|GO:0012505||IEA go_process proteolysis|GO:0006508||IEA go_function cysteine-type endopeptidase activity|GO:0004197||IEA go_process proteolysis|GO:0006508||ISS go_function GPI-anchor transamidase activity|GO:0003923||ISS product Peptidase C13 family note Peptidase C13 family; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 779 Blast hits to 778 proteins in 243 species: Archae - 4; Bacteria - 12; Metazoa - 279; Fungi - 120; Plants - 231; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink). protein_id AT1G08750.1p transcript_id AT1G08750.1 protein_id AT1G08750.1p transcript_id AT1G08750.1
At1g08750	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.2 CDS Peptidase C13 family [TAIR10] CDS gene_syn F22O13.24, F22O13_24 go_component endomembrane system|GO:0012505||IEA go_process proteolysis|GO:0006508||IEA go_function cysteine-type endopeptidase activity|GO:0004197||IEA go_process proteolysis|GO:0006508||ISS go_function GPI-anchor transamidase activity|GO:0003923||ISS product Peptidase C13 family note Peptidase C13 family; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 779 Blast hits to 778 proteins in 243 species: Archae - 4; Bacteria - 12; Metazoa - 279; Fungi - 120; Plants - 231; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink). protein_id AT1G08750.2p transcript_id AT1G08750.2 protein_id AT1G08750.2p transcript_id AT1G08750.2
At1g08750	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.3 CDS Peptidase C13 family [TAIR10] CDS gene_syn F22O13.24, F22O13_24 go_component endomembrane system|GO:0012505||IEA go_process proteolysis|GO:0006508||IEA go_function cysteine-type endopeptidase activity|GO:0004197||IEA go_process proteolysis|GO:0006508||ISS go_function GPI-anchor transamidase activity|GO:0003923||ISS product Peptidase C13 family note Peptidase C13 family; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08750.3p transcript_id AT1G08750.3 protein_id AT1G08750.3p transcript_id AT1G08750.3
At1g08760	chr1:002805478	0.0	W/2805478-2806464,2806758-2807057,2807311-2807402,2807542-2808409	AT1G08760.1 CDS GPI-anchored adhesin-like protein, putative (DUF936) [TAIR10] CDS gene_syn F22O13.25, F22O13_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF936) note Plant protein of unknown function (DUF936); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF936) (TAIR:AT3G14170.1); Has 718 Blast hits to 418 proteins in 99 species: Archae - 0; Bacteria - 149; Metazoa - 50; Fungi - 25; Plants - 280; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink). protein_id AT1G08760.1p transcript_id AT1G08760.1 protein_id AT1G08760.1p transcript_id AT1G08760.1
At1g08770	chr1:002808933	0.0	W/2808933-2809562	AT1G08770.1 CDS prenylated RAB acceptor 1.E [TAIR10] CDS gene_syn F22O13.26, F22O13_26, PRA1.E, prenylated RAB acceptor 1.E gene PRA1.E go_component endoplasmic reticulum|GO:0005783|18583532|IDA go_process vesicle-mediated transport|GO:0016192|18583532|IDA go_function molecular_function|GO:0003674||ND product prenylated RAB acceptor 1.E note prenylated RAB acceptor 1.E (PRA1.E); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1); Has 522 Blast hits to 522 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 87; Plants - 296; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). protein_id AT1G08770.1p transcript_id AT1G08770.1 protein_id AT1G08770.1p transcript_id AT1G08770.1
At1g08780	chr1:002809925	0.0	C/2809925-2810185,2810910-2811026,2811115-2811126	AT1G08780.1 CDS ABI3-interacting protein 3 [TAIR10] CDS gene_syn ABI3-interacting protein 3, AIP3, F22O13.27, F22O13_27, PFD4, PREFOLDIN 4 gene AIP3 go_component prefoldin complex|GO:0016272||IEA go_process protein folding|GO:0006457||IEA go_function unfolded protein binding|GO:0051082||IEA go_process protein folding|GO:0006457||ISS product ABI3-interacting protein 3 note ABI3-interacting protein 3 (AIP3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin, subunit 4 (InterPro:IPR016661); Has 376 Blast hits to 375 proteins in 196 species: Archae - 2; Bacteria - 0; Metazoa - 120; Fungi - 130; Plants - 57; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). protein_id AT1G08780.1p transcript_id AT1G08780.1 protein_id AT1G08780.1p transcript_id AT1G08780.1
At1g08790	chr1:002811989	0.0	W/2811989-2812478,2812564-2812646	AT1G08790.1 CDS 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) [TAIR10] CDS gene_syn F22O13.28, F22O13_28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1685) note Protein of unknown function (DUF1685); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT5G28690.1); Has 235 Blast hits to 235 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G08790.1p transcript_id AT1G08790.1 protein_id AT1G08790.1p transcript_id AT1G08790.1
At1g08800	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.1 CDS myosin-binding protein (Protein of unknown function, DUF593) [TAIR10] CDS gene_syn F22O13.29, F22O13_29 go_component endomembrane system|GO:0012505||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_process response to salt stress|GO:0009651|11351099|IEP product Protein of unknown function, DUF593 note Protein of unknown function, DUF593; INVOLVED IN: response to salt stress, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT2G30690.1); Has 6872 Blast hits to 5400 proteins in 551 species: Archae - 62; Bacteria - 762; Metazoa - 3039; Fungi - 561; Plants - 730; Viruses - 11; Other Eukaryotes - 1707 (source: NCBI BLink). protein_id AT1G08800.1p transcript_id AT1G08800.1 protein_id AT1G08800.1p transcript_id AT1G08800.1
At1g08800	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.2 CDS myosin-binding protein (Protein of unknown function, DUF593) [TAIR10] CDS gene_syn F22O13.29, F22O13_29 go_component endomembrane system|GO:0012505||IEA go_process response to salt stress|GO:0009651|11351099|IEP product Protein of unknown function, DUF593 note Protein of unknown function, DUF593; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT2G30690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G08800.2p transcript_id AT1G08800.2 protein_id AT1G08800.2p transcript_id AT1G08800.2
AT1G08800	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.3 AT1G08800.3 CDS myosin-binding protein (Protein of unknown function, DUF593)
AT1G08800	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.4 AT1G08800.4 CDS myosin-binding protein (Protein of unknown function, DUF593)
At1g08810	chr1:002819279	0.0	C/2819279-2819858,2819970-2820099,2820197-2820329	AT1G08810.1 CDS myb domain protein 60 [TAIR10] CDS gene_syn AtMYB60, F22O13.30, F22O13_30, MYB60, myb domain protein 60 gene MYB60 function putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought. go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS go_process response to water deprivation|GO:0009414|16005291|IEP go_process response to light stimulus|GO:0009416|16005291|IEP go_process response to abscisic acid stimulus|GO:0009737|16005291|IMP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process stomatal movement|GO:0010118|16005291|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|16005291|TAS product myb domain protein 60 note myb domain protein 60 (MYB60); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2); Has 8826 Blast hits to 8217 proteins in 521 species: Archae - 0; Bacteria - 0; Metazoa - 784; Fungi - 468; Plants - 5803; Viruses - 7; Other Eukaryotes - 1764 (source: NCBI BLink). protein_id AT1G08810.1p transcript_id AT1G08810.1 protein_id AT1G08810.1p transcript_id AT1G08810.1
At1g08810	chr1:002819279	0.0	C/2819279-2819872	AT1G08810.2 CDS myb domain protein 60 [TAIR10] CDS gene_syn AtMYB60, F22O13.30, F22O13_30, MYB60, myb domain protein 60 gene MYB60 function putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought. go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS go_process response to water deprivation|GO:0009414|16005291|IEP go_process response to light stimulus|GO:0009416|16005291|IEP go_process response to abscisic acid stimulus|GO:0009737|16005291|IMP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process stomatal movement|GO:0010118|16005291|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|16005291|TAS product myb domain protein 60 note myb domain protein 60 (MYB60); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08810.2p transcript_id AT1G08810.2 protein_id AT1G08810.2p transcript_id AT1G08810.2
AT1G08810	chr1:002819279	0.0	C/2819279-2819872	AT1G08810.3 AT1G08810.3 CDS myb domain protein 60
At1g08820	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.1 CDS vamp/synaptobrevin-associated protein 27-2 [TAIR10] CDS gene_syn F22O13.31, F22O13_31, VAP27-2, vamp/synaptobrevin-associated protein 27-2 gene VAP27-2 function Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function structural molecule activity|GO:0005198||IEA go_component endoplasmic reticulum membrane|GO:0005789|11907339|IDA go_process intracellular transport|GO:0046907|11907339|TAS product vamp/synaptobrevin-associated protein 27-2 note vamp/synaptobrevin-associated protein 27-2 (VAP27-2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular transport; LOCATED IN: plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1156 Blast hits to 1101 proteins in 218 species: Archae - 0; Bacteria - 19; Metazoa - 465; Fungi - 159; Plants - 427; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink). protein_id AT1G08820.1p transcript_id AT1G08820.1 protein_id AT1G08820.1p transcript_id AT1G08820.1
At1g08820	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.2 CDS vamp/synaptobrevin-associated protein 27-2 [TAIR10] CDS gene_syn F22O13.31, F22O13_31, VAP27-2, vamp/synaptobrevin-associated protein 27-2 gene VAP27-2 function Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function structural molecule activity|GO:0005198||IEA go_component endoplasmic reticulum membrane|GO:0005789|11907339|IDA go_process intracellular transport|GO:0046907|11907339|TAS product vamp/synaptobrevin-associated protein 27-2 note vamp/synaptobrevin-associated protein 27-2 (VAP27-2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular transport; LOCATED IN: plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08820.2p transcript_id AT1G08820.2 protein_id AT1G08820.2p transcript_id AT1G08820.2
AT1G08820	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.3 AT1G08820.3 CDS vamp/synaptobrevin-associated protein 27-2
AT1G08820	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.4 AT1G08820.4 CDS vamp/synaptobrevin-associated protein 27-2
AT1G08820	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.5 AT1G08820.5 CDS vamp/synaptobrevin-associated protein 27-2
At1g08830	chr1:002827700	0.0	W/2827700-2827775,2827872-2827973,2828106-2828201,2828380-2828411,2828506-2828581,2828753-2828806,2829031-2829053	AT1G08830.1 CDS copper/zinc superoxide dismutase 1 [TAIR10] CDS gene_syn CSD1, F22O13.32, F22O13_32, copper/zinc superoxide dismutase 1 gene CSD1 function Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. go_component cytoplasm|GO:0005737|1731963|NAS go_component cytosol|GO:0005829|12028573|TAS go_process response to oxidative stress|GO:0006979|12028573|TAS go_process response to oxidative stress|GO:0006979|9765550|IEP go_process response to salt stress|GO:0009651|19148671|IEP go_process response to iron ion|GO:0010039|16861386|IEP go_process response to ozone|GO:0010193|19148671|IEP go_process removal of superoxide radicals|GO:0019430|9765550|IC go_process defense response to bacterium|GO:0042742|19148671|IEP go_process response to copper ion|GO:0046688|15772282|IEP go_function superoxide dismutase activity|GO:0004784|9765550|IDA go_function superoxide dismutase activity|GO:0004784|9765550|TAS product copper/zinc superoxide dismutase 1 note copper/zinc superoxide dismutase 1 (CSD1); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1); Has 4705 Blast hits to 4689 proteins in 1491 species: Archae - 6; Bacteria - 2000; Metazoa - 1249; Fungi - 303; Plants - 666; Viruses - 142; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT1G08830.1p transcript_id AT1G08830.1 protein_id AT1G08830.1p transcript_id AT1G08830.1
At1g08830	chr1:002827700	0.0	W/2827700-2827775,2827872-2827973,2828106-2828201,2828380-2828411,2828506-2828581,2828753-2828806,2829031-2829053	AT1G08830.2 CDS copper/zinc superoxide dismutase 1 [TAIR10] CDS gene_syn CSD1, F22O13.32, F22O13_32, copper/zinc superoxide dismutase 1 gene CSD1 function Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. go_component cytoplasm|GO:0005737|1731963|NAS go_component cytosol|GO:0005829|12028573|TAS go_process response to oxidative stress|GO:0006979|12028573|TAS go_process response to oxidative stress|GO:0006979|9765550|IEP go_process response to salt stress|GO:0009651|19148671|IEP go_process response to iron ion|GO:0010039|16861386|IEP go_process response to ozone|GO:0010193|19148671|IEP go_process removal of superoxide radicals|GO:0019430|9765550|IC go_process defense response to bacterium|GO:0042742|19148671|IEP go_process response to copper ion|GO:0046688|15772282|IEP go_function superoxide dismutase activity|GO:0004784|9765550|IDA go_function superoxide dismutase activity|GO:0004784|9765550|TAS product copper/zinc superoxide dismutase 1 note copper/zinc superoxide dismutase 1 (CSD1); CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1); Has 4705 Blast hits to 4689 proteins in 1491 species: Archae - 6; Bacteria - 2000; Metazoa - 1249; Fungi - 303; Plants - 666; Viruses - 142; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT1G08830.2p transcript_id AT1G08830.2 protein_id AT1G08830.2p transcript_id AT1G08830.2
AT1G08840	chr1:002829579	0.0	C/2829579-2829704,2829791-2829910,2830004-2830141,2830205-2830278,2830373-2830412,2830769-2830906,2830996-2831088,2831168-2831245,2831469-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834017-2834073,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837598,2837698-2837865,2838034-2838369	AT1G08840.4 AT1G08840.4 CDS DNA replication helicase, putative
At1g08840	chr1:002829579	0.0	C/2829579-2829704,2829791-2829910,2830004-2830141,2830205-2830278,2830373-2830412,2830769-2830906,2830996-2831088,2831168-2831245,2831469-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834017-2834073,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837598,2837737-2837865,2838034-2838369	AT1G08840.2 CDS DNA replication helicase, putative [TAIR10] CDS gene_syn emb2411, embryo defective 2411 gene emb2411 go_component chloroplast|GO:0009507||IEA go_function DNA binding|GO:0003677||IEA go_function ATP-dependent DNA helicase activity|GO:0004003||IEA go_function ATP binding|GO:0005524||IEA go_process DNA replication|GO:0006260||ISS go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function ATP-dependent DNA helicase activity|GO:0004003||ISS product DNA replication helicase, putative note embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD/REP type (InterPro:IPR000212), DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1). protein_id AT1G08840.2p transcript_id AT1G08840.2 protein_id AT1G08840.2p transcript_id AT1G08840.2
AT1G08840	chr1:002829579	0.0	C/2829579-2829704,2829791-2829910,2830004-2830141,2830205-2830278,2830373-2830412,2830769-2830906,2830996-2831088,2831168-2831245,2831469-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834017-2834073,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837607,2837698-2837865,2838034-2838369	AT1G08840.3 AT1G08840.3 CDS DNA replication helicase, putative
At1g08840	chr1:002829579	0.0	C/2829579-2829704,2829791-2829910,2830004-2830141,2830205-2830278,2830373-2830412,2830769-2830906,2830996-2831088,2831168-2831245,2831469-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837598,2837737-2837865,2838034-2838369	AT1G08840.1 CDS DNA replication helicase, putative [TAIR10] CDS gene_syn emb2411, embryo defective 2411 gene emb2411 go_component chloroplast|GO:0009507||IEA go_function DNA binding|GO:0003677||IEA go_function ATP-dependent DNA helicase activity|GO:0004003||IEA go_function ATP binding|GO:0005524||IEA go_process DNA replication|GO:0006260||ISS go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function ATP-dependent DNA helicase activity|GO:0004003||ISS product DNA replication helicase, putative note embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD/REP type (InterPro:IPR000212), DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6121 Blast hits to 5421 proteins in 1016 species: Archae - 240; Bacteria - 1986; Metazoa - 1238; Fungi - 1140; Plants - 545; Viruses - 30; Other Eukaryotes - 942 (source: NCBI BLink). protein_id AT1G08840.1p transcript_id AT1G08840.1 protein_id AT1G08840.1p transcript_id AT1G08840.1
AT1G08840	chr1:002831463	0.0	C/2831463-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834017-2834073,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837598,2837737-2837865,2838034-2838369	AT1G08840.5 AT1G08840.5 CDS DNA replication helicase, putative
At1g08845	chr1:002838789	0.0	W/2838789-2838815,2839212-2839304,2839840-2839971,2840503-2840955	AT1G08845.2 CDS Ribosomal L18p/L5e family protein [TAIR10] CDS go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_component endomembrane system|GO:0012505||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA product Ribosomal L18p/L5e family protein note Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: endomembrane system, ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1); Has 251 Blast hits to 251 proteins in 55 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G08845.2p transcript_id AT1G08845.2 protein_id AT1G08845.2p transcript_id AT1G08845.2
At1g08845	chr1:002839855	0.0	W/2839855-2839971,2840503-2840955	AT1G08845.1 CDS Ribosomal L18p/L5e family protein [TAIR10] CDS go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA product Ribosomal L18p/L5e family protein note Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1); Has 242 Blast hits to 242 proteins in 53 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G08845.1p transcript_id AT1G08845.1 protein_id AT1G08845.1p transcript_id AT1G08845.1
AT1G08845	chr1:002839855	0.0	W/2839855-2839971,2840503-2840955	AT1G08845.3 AT1G08845.3 CDS Ribosomal L18p/L5e family protein
At1g08860	chr1:002842153	0.0	W/2842153-2842317,2843005-2843052,2843179-2843327,2843412-2843460,2843557-2843613,2843746-2843925,2844020-2844154,2844235-2844296,2844377-2844473,2844556-2844670,2844753-2844829,2845069-2845206,2845360-2845524,2845639-2845752,2845842-2845938,2846032-2846138	AT1G08860.1 CDS Calcium-dependent phospholipid-binding Copine family protein [TAIR10] CDS gene_syn BON3, BONZAI 3, F7G19.25, F7G19_25 gene BON3 function Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death. go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_process positive regulation of cellular defense response|GO:0010186||NAS go_process cellular homeostasis|GO:0019725||NAS go_process negative regulation of cell death|GO:0060548|19522566|IMP go_function calcium-dependent phospholipid binding|GO:0005544||NAS product Calcium-dependent phospholipid-binding Copine family protein note BONZAI 3 (BON3); FUNCTIONS IN: calcium-dependent phospholipid binding; INVOLVED IN: N-terminal protein myristoylation, cellular homeostasis, positive regulation of cellular defense response, negative regulation of cell death; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Copine (InterPro:IPR010734), C2 calcium-dependent membrane targeting (InterPro:IPR000008), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G61910.4); Has 1559 Blast hits to 1479 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 903; Fungi - 12; Plants - 319; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink). protein_id AT1G08860.1p transcript_id AT1G08860.1 protein_id AT1G08860.1p transcript_id AT1G08860.1
At1g08870	chr1:002846536	0.0	C/2846536-2846608	AT1G08870.1 [TAIR10] tRNA gene_syn 50888.TRNA-ALA-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ala (anticodon: TGC) transcript_id AT1G08870.1
At1g08880	chr1:002847144	0.0	C/2847144-2847365,2847470-2847676	AT1G08880.1 CDS Histone superfamily protein [TAIR10] CDS gene_syn F7G19.24, F7G19_24, G-H2AX, GAMMA H2AX, GAMMA-H2AX, H2AXA, HTA5, gamma histone variant H2AX, histone H2A 5 gene H2AXA function Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10 20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_component nucleus|GO:0005634|17785529|IDA go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note H2AXA; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: gamma histone variant H2AX (TAIR:AT1G54690.1); Has 3916 Blast hits to 3911 proteins in 363 species: Archae - 0; Bacteria - 0; Metazoa - 2550; Fungi - 318; Plants - 612; Viruses - 4; Other Eukaryotes - 432 (source: NCBI BLink). protein_id AT1G08880.1p transcript_id AT1G08880.1 protein_id AT1G08880.1p transcript_id AT1G08880.1
At1g08890	chr1:002848374	0.0	W/2848374-2848505,2848737-2848799,2848911-2849000,2849130-2849189,2849288-2849353,2849460-2849525,2849610-2849685,2849796-2849860,2849952-2850044,2850137-2850217,2850477-2850561,2850679-2850722,2850815-2850877,2850969-2851028,2851117-2851170,2851278-2851337,2851437-2851551,2851895-2852016	AT1G08890.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn F7G19.23, F7G19_23 go_component chloroplast|GO:0009507|15028209|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08900.2); Has 22268 Blast hits to 21798 proteins in 1696 species: Archae - 379; Bacteria - 7327; Metazoa - 4739; Fungi - 6227; Plants - 2471; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink). protein_id AT1G08890.1p transcript_id AT1G08890.1 protein_id AT1G08890.1p transcript_id AT1G08890.1
At1g08900	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn F7G19.22, F7G19_22 go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1); Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437; Bacteria - 7818; Metazoa - 5011; Fungi - 6239; Plants - 2470; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink). protein_id AT1G08900.1p transcript_id AT1G08900.1 protein_id AT1G08900.1p transcript_id AT1G08900.1
At1g08900	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.2 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn F7G19.22, F7G19_22 go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1); Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437; Bacteria - 7818; Metazoa - 5011; Fungi - 6239; Plants - 2470; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink). protein_id AT1G08900.2p transcript_id AT1G08900.2 protein_id AT1G08900.2p transcript_id AT1G08900.2
AT1G08900	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855436	AT1G08900.4 AT1G08900.4 CDS Major facilitator superfamily protein
At1g08900	chr1:002852478	0.0	W/2852478-2852603,2852740-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.3 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn F7G19.22, F7G19_22 go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1); Has 22743 Blast hits to 22256 proteins in 1748 species: Archae - 444; Bacteria - 7522; Metazoa - 5012; Fungi - 6093; Plants - 2466; Viruses - 0; Other Eukaryotes - 1206 (source: NCBI BLink). protein_id AT1G08900.3p transcript_id AT1G08900.3 protein_id AT1G08900.3p transcript_id AT1G08900.3
AT1G08900	chr1:002852716	0.0	W/2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.5 AT1G08900.5 CDS Major facilitator superfamily protein
At1g08910	chr1:002856227	0.0	W/2856227-2856249,2856421-2856483,2856606-2856678,2856776-2856844,2856941-2857006,2857087-2857169,2857301-2857352,2857431-2857502,2857779-2857846,2857936-2857984,2858076-2858160,2858237-2858338,2858503-2858554,2858653-2858704,2858995-2859057,2859193-2859846,2859953-2860816	AT1G08910.1 CDS zinc ion binding protein [TAIR10] CDS gene_syn EMB3001, F7G19.21, F7G19_21, embryo defective 3001 gene EMB3001 go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function zinc ion binding|GO:0008270||ISS product zinc ion binding;zinc ion binding note embryo defective 3001 (EMB3001); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 1002 Blast hits to 979 proteins in 199 species: Archae - 0; Bacteria - 25; Metazoa - 593; Fungi - 182; Plants - 101; Viruses - 6; Other Eukaryotes - 95 (source: NCBI BLink). protein_id AT1G08910.1p transcript_id AT1G08910.1 protein_id AT1G08910.1p transcript_id AT1G08910.1
At1g08920	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869515-2869595,2869714-2869767,2869860-2869919,2870014-2870128,2870236-2870360	AT1G08920.2 CDS ERD (early response to dehydration) six-like 1 [TAIR10] CDS gene_syn ERD (early response to dehydration) six-like 1, ESL1, F7G19.20, F7G19_20 gene ESL1 function Encodes ESL1, a transporter for monosaccharides. go_component plant-type vacuole membrane|GO:0009705|19901034|IDA go_component membrane|GO:0016020||ISS go_process response to water deprivation|GO:0009414|19901034|IEP go_process response to salt stress|GO:0009651|19901034|IEP go_process response to abscisic acid stimulus|GO:0009737|19901034|IEP go_process monosaccharide transport|GO:0015749|19901034|IDA go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS go_function monosaccharide transmembrane transporter activity|GO:0015145|19901034|IDA product ERD (early response to dehydration) six-like 1 note ERD (early response to dehydration) six-like 1 (ESL1); CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08930.2); Has 22673 Blast hits to 22189 proteins in 1824 species: Archae - 355; Bacteria - 8744; Metazoa - 4150; Fungi - 6023; Plants - 2283; Viruses - 0; Other Eukaryotes - 1118 (source: NCBI BLink). protein_id AT1G08920.2p transcript_id AT1G08920.2 protein_id AT1G08920.2p transcript_id AT1G08920.2
At1g08920	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869536-2869595,2869714-2869767,2869860-2869919,2870014-2870128,2870236-2870360	AT1G08920.1 CDS ERD (early response to dehydration) six-like 1 [TAIR10] CDS gene_syn ERD (early response to dehydration) six-like 1, ESL1, F7G19.20, F7G19_20 gene ESL1 function Encodes ESL1, a transporter for monosaccharides. go_component plant-type vacuole membrane|GO:0009705|19901034|IDA go_component membrane|GO:0016020||ISS go_process response to water deprivation|GO:0009414|19901034|IEP go_process response to salt stress|GO:0009651|19901034|IEP go_process response to abscisic acid stimulus|GO:0009737|19901034|IEP go_process monosaccharide transport|GO:0015749|19901034|IDA go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS go_function monosaccharide transmembrane transporter activity|GO:0015145|19901034|IDA product ERD (early response to dehydration) six-like 1 note ERD (early response to dehydration) six-like 1 (ESL1); CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08930.2); Has 23660 Blast hits to 23155 proteins in 1879 species: Archae - 378; Bacteria - 9422; Metazoa - 4252; Fungi - 6142; Plants - 2335; Viruses - 0; Other Eukaryotes - 1131 (source: NCBI BLink). protein_id AT1G08920.1p transcript_id AT1G08920.1 protein_id AT1G08920.1p transcript_id AT1G08920.1
At1g08920	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869536-2869595,2869714-2869767,2869860-2869919,2870014-2870190	AT1G08920.3 CDS ERD (early response to dehydration) six-like 1 [TAIR10] CDS gene_syn ERD (early response to dehydration) six-like 1, ESL1, F7G19.20, F7G19_20 gene ESL1 function Encodes ESL1, a transporter for monosaccharides. go_component plant-type vacuole membrane|GO:0009705|19901034|IDA go_component membrane|GO:0016020||ISS go_process response to water deprivation|GO:0009414|19901034|IEP go_process response to salt stress|GO:0009651|19901034|IEP go_process response to abscisic acid stimulus|GO:0009737|19901034|IEP go_process monosaccharide transport|GO:0015749|19901034|IDA go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS go_function monosaccharide transmembrane transporter activity|GO:0015145|19901034|IDA product ERD (early response to dehydration) six-like 1 note ERD (early response to dehydration) six-like 1 (ESL1); CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08920.3p transcript_id AT1G08920.3 protein_id AT1G08920.3p transcript_id AT1G08920.3
At1g08930	chr1:002873604	0.0	W/2873604-2873828,2873958-2874020,2874096-2874185,2874311-2874370,2874492-2874557,2874648-2874713,2874816-2874891,2874996-2875060,2875210-2875302,2875415-2875495,2875635-2875719,2875824-2875867,2875961-2876023,2876121-2876180,2876326-2876439,2876639-2876753,2876855-2876979	AT1G08930.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn EARLY RESPONSE TO DEHYDRATION 6, ERD6, F7G19.19, F7G19_19 gene ERD6 function encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_component membrane|GO:0016020||ISS go_process response to cold|GO:0009409|9545564|IEP go_process response to water deprivation|GO:0009414|19901034|IEP go_process response to water deprivation|GO:0009414|8075396|IEP go_process response to salt stress|GO:0009651|19901034|IEP go_process response to abscisic acid stimulus|GO:0009737|19901034|IEP go_process response to chitin|GO:0010200|17722694|IEP go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS go_function sugar transmembrane transporter activity|GO:0051119|9545564|ISS product Major facilitator superfamily protein note EARLY RESPONSE TO DEHYDRATION 6 (ERD6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sugar transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, response to cold, response to chitin, response to abscisic acid stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD (early response to dehydration) six-like 1 (TAIR:AT1G08920.1); Has 27777 Blast hits to 27182 proteins in 2058 species: Archae - 500; Bacteria - 11725; Metazoa - 4936; Fungi - 6599; Plants - 2746; Viruses - 0; Other Eukaryotes - 1271 (source: NCBI BLink). protein_id AT1G08930.1p transcript_id AT1G08930.1 protein_id AT1G08930.1p transcript_id AT1G08930.1
At1g08930	chr1:002873604	0.0	W/2873604-2873828,2873958-2874020,2874096-2874185,2874311-2874370,2874492-2874557,2874648-2874713,2874816-2874891,2874996-2875060,2875210-2875302,2875415-2875495,2875635-2875719,2875824-2875867,2875961-2876023,2876121-2876180,2876326-2876439,2876639-2876753,2876855-2876979	AT1G08930.2 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn EARLY RESPONSE TO DEHYDRATION 6, ERD6, F7G19.19, F7G19_19 gene ERD6 function encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_component membrane|GO:0016020||ISS go_process response to cold|GO:0009409|9545564|IEP go_process response to water deprivation|GO:0009414|19901034|IEP go_process response to water deprivation|GO:0009414|8075396|IEP go_process response to salt stress|GO:0009651|19901034|IEP go_process response to abscisic acid stimulus|GO:0009737|19901034|IEP go_process response to chitin|GO:0010200|17722694|IEP go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS go_function sugar transmembrane transporter activity|GO:0051119|9545564|ISS product Major facilitator superfamily protein note EARLY RESPONSE TO DEHYDRATION 6 (ERD6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sugar transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, response to cold, response to chitin, response to abscisic acid stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD (early response to dehydration) six-like 1 (TAIR:AT1G08920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08930.2p transcript_id AT1G08930.2 protein_id AT1G08930.2p transcript_id AT1G08930.2
At1g08940	chr1:002877694	0.0	W/2877694-2878150,2878716-2879104	AT1G08940.1 CDS Phosphoglycerate mutase family protein [TAIR10] CDS gene_syn F7G19.18, F7G19_18 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_component cellular_component|GO:0005575||ND go_process metabolic process|GO:0008152||ISS go_function catalytic activity|GO:0003824||ISS product Phosphoglycerate mutase family protein note Phosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G05170.1); Has 1152 Blast hits to 1140 proteins in 473 species: Archae - 9; Bacteria - 736; Metazoa - 2; Fungi - 189; Plants - 85; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink). protein_id AT1G08940.1p transcript_id AT1G08940.1 protein_id AT1G08940.1p transcript_id AT1G08940.1
At1g08950	chr1:002879303	0.0	W/2879303-2879374	AT1G08950.1 [TAIR10] tRNA gene_syn 50888.TRNA-PRO-1 go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Pro (anticodon: AGG) transcript_id AT1G08950.1
At1g08960	chr1:002879698	0.0	W/2879698-2880573,2881113-2881877	AT1G08960.1 CDS cation exchanger 11 [TAIR10] CDS gene_syn ATCAX11, CATION EXCHANGER 11, CAX11, F7G19.17, F7G19_17, cation exchanger 11 gene CAX11 function member of Potassium-dependent sodium-calcium exchanger like-family go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process transmembrane transport|GO:0055085||IEA go_process cation transport|GO:0006812||ISS go_function calcium:sodium antiporter activity|GO:0005432||ISS go_function cation:cation antiporter activity|GO:0015491|11500563|NAS go_function cation:cation antiporter activity|GO:0015491||ISS product cation exchanger 11 note cation exchanger 11 (CAX11); FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: calcium exchanger 7 (TAIR:AT5G17860.1); Has 4219 Blast hits to 2943 proteins in 815 species: Archae - 83; Bacteria - 1788; Metazoa - 1182; Fungi - 291; Plants - 224; Viruses - 0; Other Eukaryotes - 651 (source: NCBI BLink). protein_id AT1G08960.1p transcript_id AT1G08960.1 protein_id AT1G08960.1p transcript_id AT1G08960.1
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.1 CDS nuclear factor Y, subunit C9 [TAIR10] CDS gene_syn nuclear factor Y, subunit C9, F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9 gene NF-YC9 function heme activated protein (HAP5c) go_component nucleus|GO:0005634|15610358|IDA go_component nucleus|GO:0005634||ISS go_component cytoplasm|GO:0005737|15610358|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product nuclear factor Y, subunit C9 note nuclear factor Y, subunit C9 (NF-YC9); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 1343 Blast hits to 1343 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 349; Plants - 427; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). protein_id AT1G08970.1p transcript_id AT1G08970.1 protein_id AT1G08970.1p transcript_id AT1G08970.1
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.2 CDS nuclear factor Y, subunit C9 [TAIR10] CDS gene_syn nuclear factor Y, subunit C9, F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9 gene NF-YC9 function heme activated protein (HAP5c) go_component nucleus|GO:0005634|15610358|IDA go_component nucleus|GO:0005634||ISS go_component cytoplasm|GO:0005737|15610358|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product nuclear factor Y, subunit C9 note nuclear factor Y, subunit C9 (NF-YC9); CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 1345 Blast hits to 1345 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 351; Plants - 427; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). protein_id AT1G08970.2p transcript_id AT1G08970.2 protein_id AT1G08970.2p transcript_id AT1G08970.2
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.3 CDS nuclear factor Y, subunit C9 [TAIR10] CDS gene_syn nuclear factor Y, subunit C9, F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9 gene NF-YC9 function heme activated protein (HAP5c) go_component nucleus|GO:0005634|15610358|IDA go_component nucleus|GO:0005634||ISS go_component cytoplasm|GO:0005737|15610358|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product nuclear factor Y, subunit C9 note nuclear factor Y, subunit C9 (NF-YC9); CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08970.3p transcript_id AT1G08970.3 protein_id AT1G08970.3p transcript_id AT1G08970.3
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.4 CDS nuclear factor Y, subunit C9 [TAIR10] CDS gene_syn nuclear factor Y, subunit C9, F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9 gene NF-YC9 function heme activated protein (HAP5c) go_component nucleus|GO:0005634|15610358|IDA go_component nucleus|GO:0005634||ISS go_component cytoplasm|GO:0005737|15610358|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product nuclear factor Y, subunit C9 note nuclear factor Y, subunit C9 (NF-YC9); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G08970.4p transcript_id AT1G08970.4 protein_id AT1G08970.4p transcript_id AT1G08970.4
At1g08980	chr1:002884455	0.0	W/2884455-2884567,2884649-2884801,2884934-2885058,2885150-2885275,2885351-2885533,2885614-2885770,2885840-2886008,2886099-2886233,2886314-2886430	AT1G08980.1 CDS amidase 1 [TAIR10] CDS gene_syn AMI1, AMIDASE-LIKE PROTEIN 1, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, ATAMI1, ATTOC64-I, TOC64-I, TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, amidase 1 gene AMI1 function Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. It appears to exist as a monomer. go_component cytoplasm|GO:0005737|16738862|IDA go_process indoleacetic acid biosynthetic process|GO:0009684|12620340|IDA go_function amidase activity|GO:0004040|17555521|IDA go_function amidase activity|GO:0004040||ISS go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810|12620340|IDA go_function indoleacetamide hydrolase activity|GO:0043864|12620340|IDA product amidase 1 note amidase 1 (AMI1); FUNCTIONS IN: amidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, indoleacetamide hydrolase activity; INVOLVED IN: indoleacetic acid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase, conserved site (InterPro:IPR020556), Amidase (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-V (TAIR:AT5G09420.1); Has 18462 Blast hits to 18443 proteins in 2488 species: Archae - 262; Bacteria - 10888; Metazoa - 543; Fungi - 1390; Plants - 376; Viruses - 0; Other Eukaryotes - 5003 (source: NCBI BLink). protein_id AT1G08980.1p transcript_id AT1G08980.1 protein_id AT1G08980.1p transcript_id AT1G08980.1
At1g08985	chr1:002887329	0.0	W/2887329-2887634	AT1G08985.1 CDS AP2/B3-like transcriptional factor family protein [TAIR10] CDS go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||IEA go_component cellular_component|GO:0005575||ND product AP2/B3-like transcriptional factor family protein note AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT2G21920.1); Has 35 Blast hits to 35 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G08985.1p transcript_id AT1G08985.1 protein_id AT1G08985.1p transcript_id AT1G08985.1
At1g08990	chr1:002888753	0.0	W/2888753-2889500,2889638-2890104,2890268-2890753	AT1G08990.1 CDS plant glycogenin-like starch initiation protein 5 [TAIR10] CDS gene_syn F7G19.14, F7G19_14, PGSIP5, plant glycogenin-like starch initiation protein 5 gene PGSIP5 go_component endomembrane system|GO:0012505||IEA go_process biosynthetic process|GO:0009058||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product plant glycogenin-like starch initiation protein 5 note plant glycogenin-like starch initiation protein 5 (PGSIP5); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 4 (TAIR:AT1G54940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G08990.1p transcript_id AT1G08990.1 protein_id AT1G08990.1p transcript_id AT1G08990.1
At1g09000	chr1:002891111	0.0	W/2891111-2891407,2891524-2891565,2891662-2891727,2891828-2891938,2892018-2892098,2892182-2892259,2892400-2892482,2892624-2892705,2892787-2892887,2892999-2893038,2893123-2893182,2893267-2893316,2893415-2893634,2893751-2893921,2894015-2894367,2894630-2894700,2894893-2894987	AT1G09000.1 CDS NPK1-related protein kinase 1 [TAIR10] CDS gene_syn ANP1, F7G19.13, F7G19_13, MAP KINASE KINASE KINASE 1, MAPKKK1, NP1, NPK1-related protein kinase 1 gene NP1 function NPK1-related protein kinase 1S go_component cellular_component|GO:0005575||ND go_process response to oxidative stress|GO:0006979|10717008|IDA go_process flower development|GO:0009908|12034900|IGI go_function MAP kinase kinase kinase activity|GO:0004709|9263451|ISS go_function kinase activity|GO:0016301||ISS product NPK1-related protein kinase 1 note NPK1-related protein kinase 1 (NP1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: NPK1-related protein kinase 2 (TAIR:AT1G54960.1); Has 134800 Blast hits to 132536 proteins in 4716 species: Archae - 154; Bacteria - 14967; Metazoa - 50642; Fungi - 13331; Plants - 33399; Viruses - 553; Other Eukaryotes - 21754 (source: NCBI BLink). protein_id AT1G09000.1p transcript_id AT1G09000.1 protein_id AT1G09000.1p transcript_id AT1G09000.1
AT1G09000	chr1:002891111	0.0	W/2891111-2891407,2891524-2891565,2891662-2891727,2891828-2891938,2892018-2892098,2892182-2892259,2892400-2892482,2892624-2892705,2892787-2892887,2892999-2893038,2893123-2893182,2893267-2893316,2893415-2893634,2893751-2893921,2894015-2894395	AT1G09000.2 AT1G09000.2 CDS NPK1-related protein kinase 1
At1g09010	chr1:002895259	0.0	C/2895259-2895993,2896146-2896373,2896541-2897185,2897266-2897470,2897557-2897726,2897840-2898070,2898181-2898229,2898305-2898363,2898448-2898672,2898762-2898900,2899139-2899287	AT1G09010.1 CDS glycoside hydrolase family 2 protein [TAIR10] CDS gene_syn F7G19.12, F7G19_12 go_component vacuole|GO:0005773|15539469|IDA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product glycoside hydrolase family 2 protein note glycoside hydrolase family 2 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 5072 Blast hits to 5044 proteins in 1162 species: Archae - 18; Bacteria - 3983; Metazoa - 234; Fungi - 319; Plants - 43; Viruses - 2; Other Eukaryotes - 473 (source: NCBI BLink). protein_id AT1G09010.1p transcript_id AT1G09010.1 protein_id AT1G09010.1p transcript_id AT1G09010.1
At1g09020	chr1:002900149	0.0	C/2900149-2900243,2900348-2900465,2900658-2900727,2900815-2900878,2901266-2901439,2901728-2901872,2902037-2902171,2902352-2902441,2902652-2902711,2902839-2902961,2903243-2903419,2903853-2903940,2904088-2904212	AT1G09020.1 CDS homolog of yeast sucrose nonfermenting 4 [TAIR10] CDS gene_syn ATSNF4, F7G19.11, F7G19_11, PUTATIVE ACTIVATOR SUBUNIT OF SNF1-RELATED PROTEIN KINASE SNF4, SNF4, homolog of yeast sucrose nonfermenting 4 gene SNF4 function putative activator subunit of SNF1-related protein kinase go_process cellular response to glucose starvation|GO:0042149|10929106|IDA go_function protein kinase activator activity|GO:0030295|10929106|ISS product homolog of yeast sucrose nonfermenting 4 note homolog of yeast sucrose nonfermenting 4 (SNF4); CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 1379 Blast hits to 1368 proteins in 272 species: Archae - 14; Bacteria - 104; Metazoa - 613; Fungi - 295; Plants - 229; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). protein_id AT1G09020.1p transcript_id AT1G09020.1 protein_id AT1G09020.1p transcript_id AT1G09020.1
At1g09026	chr1:002907124	0.0	W/2907124-2907279	AT1G09026.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G09026.1p transcript_id AT1G09026.1 protein_id AT1G09026.1p transcript_id AT1G09026.1
At1g09030	chr1:002908611	0.0	C/2908611-2909030	AT1G09030.1 CDS nuclear factor Y, subunit B4 [TAIR10] CDS gene_syn nuclear factor Y, subunit B4, F7G19.10, F7G19_10, NF-YB4 gene NF-YB4 go_component intracellular|GO:0005622||IEA go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product nuclear factor Y, subunit B4 note nuclear factor Y, subunit B4 (NF-YB4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B5 (TAIR:AT2G47810.1); Has 1487 Blast hits to 1487 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 373; Plants - 505; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). protein_id AT1G09030.1p transcript_id AT1G09030.1 protein_id AT1G09030.1p transcript_id AT1G09030.1
At1g09040	chr1:002912362	0.0	W/2912362-2913087,2913165-2915174	AT1G09040.1 CDS arginine-glutamic acid dipeptide repeat protein, putative [TAIR10] CDS gene_syn F7G19.9, F7G19_9 go_component membrane|GO:0016020|17432890|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1); Has 614 Blast hits to 567 proteins in 104 species: Archae - 2; Bacteria - 12; Metazoa - 344; Fungi - 31; Plants - 81; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). protein_id AT1G09040.1p transcript_id AT1G09040.1 protein_id AT1G09040.1p transcript_id AT1G09040.1
At1g09050	chr1:002918031	0.0	W/2918031-2918756,2918834-2920858	AT1G09050.1 CDS arginine-glutamic acid dipeptide repeat protein, putative [TAIR10] CDS gene_syn F7G19.8, F7G19_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1); Has 552 Blast hits to 499 proteins in 115 species: Archae - 0; Bacteria - 86; Metazoa - 259; Fungi - 14; Plants - 77; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). protein_id AT1G09050.1p transcript_id AT1G09050.1 protein_id AT1G09050.1p transcript_id AT1G09050.1
AT1G09050	chr1:002918031	0.0	W/2918031-2918756,2918834-2920858	AT1G09050.2 AT1G09050.2 CDS arginine-glutamic acid dipeptide repeat protein, putative
At1g09060	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925212	AT1G09060.1 CDS JmjC domain protein JMJ24 [TAIR10] CDS gene_syn F7G19.7, F7G19_7 go_function zinc ion binding|GO:0008270||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase note Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 1115 Blast hits to 1061 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 398; Fungi - 30; Plants - 639; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G09060.1p transcript_id AT1G09060.1 protein_id AT1G09060.1p transcript_id AT1G09060.1
At1g09060	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925212	AT1G09060.2 CDS JmjC domain protein JMJ24 [TAIR10] CDS gene_syn F7G19.7, F7G19_7 go_function zinc ion binding|GO:0008270||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase note Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09060.2p transcript_id AT1G09060.2 protein_id AT1G09060.2p transcript_id AT1G09060.2
At1g09060	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925254	AT1G09060.3 CDS JmjC domain protein JMJ24 [TAIR10] CDS gene_syn F7G19.7, F7G19_7 go_function zinc ion binding|GO:0008270||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase note Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09060.3p transcript_id AT1G09060.3 protein_id AT1G09060.3p transcript_id AT1G09060.3
AT1G09060	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925254	AT1G09060.4 AT1G09060.4 CDS JmjC domain protein JMJ24
At1g09070	chr1:002927767	0.0	W/2927767-2928741	AT1G09070.1 CDS soybean gene regulated by cold-2 [TAIR10] CDS gene_syn (AT)SRC2, F7G19.6, F7G19_6, SOYBEAN GENE REGULATED BY COLD-2, SRC2, soybean gene regulated by cold-2 gene SRC2 function SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting. go_component protein storage vacuole|GO:0000326|16227454|IDA go_component endoplasmic reticulum|GO:0005783|16227454|IDA go_process protein targeting to vacuole|GO:0006623|16227454|TAS go_function protein binding|GO:0005515|16227454|IPI product soybean gene regulated by cold-2 note soybean gene regulated by cold-2 (SRC2); CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G16510.1); Has 25146 Blast hits to 15856 proteins in 1076 species: Archae - 6; Bacteria - 3010; Metazoa - 13770; Fungi - 3151; Plants - 2962; Viruses - 83; Other Eukaryotes - 2164 (source: NCBI BLink). protein_id AT1G09070.1p transcript_id AT1G09070.1 protein_id AT1G09070.1p transcript_id AT1G09070.1
At1g09080	chr1:002929268	0.0	C/2929268-2929754,2929844-2930081,2930177-2930899,2931069-2931280,2931376-2931640,2931732-2931804	AT1G09080.2 CDS Heat shock protein 70 (Hsp 70) family protein [TAIR10] CDS gene_syn BIP3, F7G19.5, F7G19_5 gene BIP3 go_function ATP binding|GO:0005524||IEA go_component endoplasmic reticulum lumen|GO:0005788|11402207|TAS go_process protein folding|GO:0006457|11402207|TAS go_process protein folding|GO:0006457||ISS go_process response to heat|GO:0009408|8888624|IDA go_process pollen tube growth|GO:0009860|19714218|IEP product Heat shock protein 70 (Hsp 70) family protein note BIP3; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat, pollen tube growth; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G42020.1). protein_id AT1G09080.2p transcript_id AT1G09080.2 protein_id AT1G09080.2p transcript_id AT1G09080.2
At1g09080	chr1:002929268	0.0	C/2929268-2929754,2929844-2930081,2930177-2930899,2931069-2931280,2931376-2931670,2931732-2931804	AT1G09080.1 CDS Heat shock protein 70 (Hsp 70) family protein [TAIR10] CDS gene_syn BIP3, F7G19.5, F7G19_5 gene BIP3 go_function ATP binding|GO:0005524||IEA go_component endoplasmic reticulum lumen|GO:0005788|11402207|TAS go_process protein folding|GO:0006457|11402207|TAS go_process protein folding|GO:0006457||ISS go_process response to heat|GO:0009408|8888624|IDA go_process pollen tube growth|GO:0009860|19714218|IEP product Heat shock protein 70 (Hsp 70) family protein note BIP3; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat, pollen tube growth; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1); Has 36561 Blast hits to 35981 proteins in 4871 species: Archae - 169; Bacteria - 17528; Metazoa - 4151; Fungi - 1824; Plants - 1283; Viruses - 337; Other Eukaryotes - 11269 (source: NCBI BLink). protein_id AT1G09080.1p transcript_id AT1G09080.1 protein_id AT1G09080.1p transcript_id AT1G09080.1
At1g09090	chr1:002932743	0.0	W/2932743-2933127,2933284-2933443,2933558-2933606,2933696-2933809,2933952-2934389,2934549-2934935,2935061-2935156,2935268-2935383,2935467-2935569,2935644-2935717,2935797-2936296,2936386-2936495	AT1G09090.2 CDS respiratory burst oxidase homolog B [TAIR10] CDS gene_syn ATRBOHB, ATRBOHB-BETA, F7G19.4, F7G19_4, RBOHB, respiratory burst oxidase homolog B gene RBOHB function NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB- mRNA and prevented prevented AtrbohB-a mRNA expression in fresh seeds. go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process defense response|GO:0006952|9490748|TAS go_process defense response|GO:0006952|9628030|TAS go_process response to heat|GO:0009408|15923322|IMP go_process seed germination|GO:0009845|19761445|IMP go_function NAD(P)H oxidase activity|GO:0016174|19761445|IMP product respiratory burst oxidase homolog B note respiratory burst oxidase homolog B (RBOHB); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to heat, seed germination, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: embryo, root; EXPRESSED DURING: imbibition; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09090.2p transcript_id AT1G09090.2 protein_id AT1G09090.2p transcript_id AT1G09090.2
At1g09090	chr1:002932743	0.0	W/2932743-2933127,2933284-2933443,2933558-2933606,2933696-2933809,2933952-2934389,2934549-2934935,2935061-2935156,2935268-2935383,2935467-2935590	AT1G09090.1 CDS respiratory burst oxidase homolog B [TAIR10] CDS gene_syn ATRBOHB, ATRBOHB-BETA, F7G19.4, F7G19_4, RBOHB, respiratory burst oxidase homolog B gene RBOHB function NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB- mRNA and prevented prevented AtrbohB-a mRNA expression in fresh seeds. go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process defense response|GO:0006952|9490748|TAS go_process defense response|GO:0006952|9628030|TAS go_process response to heat|GO:0009408|15923322|IMP go_process seed germination|GO:0009845|19761445|IMP go_function NAD(P)H oxidase activity|GO:0016174|19761445|IMP product respiratory burst oxidase homolog B note respiratory burst oxidase homolog B (RBOHB); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to heat, seed germination, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: embryo, root; EXPRESSED DURING: imbibition; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1); Has 1619 Blast hits to 1551 proteins in 238 species: Archae - 2; Bacteria - 81; Metazoa - 636; Fungi - 280; Plants - 489; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink). protein_id AT1G09090.1p transcript_id AT1G09090.1 protein_id AT1G09090.1p transcript_id AT1G09090.1
At1g09100	chr1:002936675	0.0	C/2936675-2936752,2936832-2936972,2937153-2937272,2937354-2937441,2937519-2937637,2937734-2937925,2938024-2938215,2938334-2938441,2938681-2938797,2939142-2939258	AT1G09100.1 CDS 26S proteasome AAA-ATPase subunit RPT5B [TAIR10] CDS gene_syn 26S proteasome AAA-ATPase subunit RPT5B, F7G19.2, F7G19_2, RPT5B gene RPT5B function Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_component proteasome complex|GO:0000502|20516081|IDA go_process embryo sac development|GO:0009553|19223514|IGI go_process pollen development|GO:0009555|19223514|IGI go_process glucose mediated signaling pathway|GO:0010255|17081979|IMP go_process proteasomal protein catabolic process|GO:0010498|19223514|IGI go_function calmodulin binding|GO:0005516|11782485|ISS go_function ATPase activity|GO:0016887||ISS product 26S proteasome AAA-ATPase subunit RPT5B note 26S proteasome AAA-ATPase subunit RPT5B (RPT5B); FUNCTIONS IN: ATPase activity, calmodulin binding; INVOLVED IN: glucose mediated signaling pathway, proteasomal protein catabolic process, embryo sac development, pollen development; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 5A (TAIR:AT3G05530.1); Has 33470 Blast hits to 31156 proteins in 3185 species: Archae - 1434; Bacteria - 12401; Metazoa - 4942; Fungi - 3663; Plants - 3251; Viruses - 53; Other Eukaryotes - 7726 (source: NCBI BLink). protein_id AT1G09100.1p transcript_id AT1G09100.1 protein_id AT1G09100.1p transcript_id AT1G09100.1
At1g09110	chr1:002939417	0.0	W/2939417-2939488	AT1G09110.1 [TAIR10] tRNA gene_syn 50888.TRNA-GLU-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Glu (anticodon: TTC) transcript_id AT1G09110.1
At1g09130	chr1:002939731	0.0	C/2939731-2939859,2940072-2940152,2940365-2940448,2940523-2940576,2940797-2940870,2940958-2941054,2941213-2941272,2941351-2941473,2941547-2941648,2941909-2942217	AT1G09130.3 CDS ATP-dependent caseinolytic (Clp) protease/crotonase family protein [TAIR10] CDS gene_syn F7G19.1, F7G19_1 go_process proteolysis|GO:0006508||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_component chloroplast stroma|GO:0009570|11278690|IDA product ATP-dependent caseinolytic (Clp) protease/crotonase family protein note ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1). protein_id AT1G09130.3p transcript_id AT1G09130.3 protein_id AT1G09130.3p transcript_id AT1G09130.3
At1g09130	chr1:002940063	0.0	C/2940063-2940152,2940365-2940448,2940523-2940576,2940797-2940870,2940958-2941054,2941213-2941272,2941351-2941473,2941547-2941648,2941909-2942217	AT1G09130.1 CDS ATP-dependent caseinolytic (Clp) protease/crotonase family protein [TAIR10] CDS gene_syn F7G19.1, F7G19_1 go_component chloroplast|GO:0009507|18431481|IDA go_component plastid stroma|GO:0009532|14593120|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process proteolysis|GO:0006508||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_component chloroplast stroma|GO:0009570|11278690|IDA product ATP-dependent caseinolytic (Clp) protease/crotonase family protein note ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1); Has 11947 Blast hits to 11945 proteins in 2949 species: Archae - 0; Bacteria - 7353; Metazoa - 146; Fungi - 81; Plants - 1069; Viruses - 3; Other Eukaryotes - 3295 (source: NCBI BLink). protein_id AT1G09130.1p transcript_id AT1G09130.1 protein_id AT1G09130.1p transcript_id AT1G09130.1
At1g09130	chr1:002940063	0.0	C/2940063-2940152,2940365-2940448,2940523-2940576,2940797-2940870,2940958-2941054,2941213-2941272,2941351-2941473,2941547-2941648,2941909-2942217	AT1G09130.2 CDS ATP-dependent caseinolytic (Clp) protease/crotonase family protein [TAIR10] CDS gene_syn F7G19.1, F7G19_1 go_component chloroplast|GO:0009507|18431481|IDA go_component thylakoid|GO:0009579|16648217|IDA go_process proteolysis|GO:0006508||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_component chloroplast stroma|GO:0009570|11278690|IDA product ATP-dependent caseinolytic (Clp) protease/crotonase family protein note ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09130.2p transcript_id AT1G09130.2 protein_id AT1G09130.2p transcript_id AT1G09130.2
At1g09140	chr1:002942887	0.0	C/2942887-2942901,2943169-2943226,2944169-2944246,2944344-2944456,2944530-2944586,2944730-2944779,2944903-2944960,2945068-2945114,2945200-2945302,2945382-2945456,2945543-2945608,2945732-2945818	AT1G09140.1 CDS SERINE-ARGININE PROTEIN 30 [TAIR10] CDS gene_syn ATSRP30, ATSRP30.1, ATSRP30.2, SERINE-ARGININE PROTEIN 30, T12M4.19, T12M4_19 gene ATSRP30 function Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. go_function RNA binding|GO:0003723||ISS product SERINE-ARGININE PROTEIN 30 note SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 10547 Blast hits to 8837 proteins in 431 species: Archae - 0; Bacteria - 274; Metazoa - 6368; Fungi - 1180; Plants - 1529; Viruses - 86; Other Eukaryotes - 1110 (source: NCBI BLink). protein_id AT1G09140.1p transcript_id AT1G09140.1 protein_id AT1G09140.1p transcript_id AT1G09140.1
At1g09140	chr1:002943528	0.0	C/2943528-2943564,2944169-2944246,2944344-2944456,2944530-2944586,2944730-2944779,2944903-2944960,2945068-2945114,2945200-2945302,2945382-2945456,2945543-2945608,2945732-2945818	AT1G09140.2 CDS SERINE-ARGININE PROTEIN 30 [TAIR10] CDS gene_syn ATSRP30, ATSRP30.1, ATSRP30.2, SERINE-ARGININE PROTEIN 30, T12M4.19, T12M4_19 gene ATSRP30 function Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. go_function RNA binding|GO:0003723||ISS product SERINE-ARGININE PROTEIN 30 note SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09140.2p transcript_id AT1G09140.2 protein_id AT1G09140.2p transcript_id AT1G09140.2
AT1G09140	chr1:002944156	0.0	C/2944156-2944246,2944344-2944456,2944530-2944586,2944730-2944779,2944903-2944960,2945068-2945114,2945200-2945302,2945382-2945456,2945543-2945608,2945732-2945818	AT1G09140.3 AT1G09140.3 CDS SERINE-ARGININE PROTEIN 30
At1g09150	chr1:002946599	0.0	W/2946599-2946609,2947210-2947291,2947388-2947455,2947557-2947654,2948174-2948310,2948393-2948460,2948710-2948773,2948891-2948908	AT1G09150.1 CDS pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein [TAIR10] CDS gene_syn T12M4.18, T12M4_18 go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein note pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Translation-associated RNA-binding, predicted (InterPro:IPR016437), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 885 Blast hits to 883 proteins in 291 species: Archae - 148; Bacteria - 0; Metazoa - 325; Fungi - 155; Plants - 86; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink). protein_id AT1G09150.1p transcript_id AT1G09150.1 protein_id AT1G09150.1p transcript_id AT1G09150.1
At1g09155	chr1:002949831	0.0	C/2949831-2950332,2950407-2950525,2950594-2950842	AT1G09155.1 CDS phloem protein 2-B15 [TAIR10] CDS gene_syn AtPP2-B15, PP2-B15, phloem protein 2-B15 gene PP2-B15 go_component endomembrane system|GO:0012505||IEA go_function carbohydrate binding|GO:0030246|12529520|ISS product phloem protein 2-B15 note phloem protein 2-B15 (PP2-B15); FUNCTIONS IN: carbohydrate binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: phloem protein 2-B13 (TAIR:AT1G56240.1); Has 535 Blast hits to 526 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 535; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09155.1p transcript_id AT1G09155.1 protein_id AT1G09155.1p transcript_id AT1G09155.1
At1g09157	chr1:002951665	0.0	C/2951665-2952396	AT1G09157.1 CDS transmembrane protein, putative (DUF679) [TAIR10] CDS go_component chloroplast|GO:0009507||IEA product Protein of unknown function (DUF679) note Protein of unknown function (DUF679); LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF679) (TAIR:AT5G39650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09157.1p transcript_id AT1G09157.1 protein_id AT1G09157.1p transcript_id AT1G09157.1
At1g09160	chr1:002953199	0.0	C/2953199-2953418,2953530-2953762,2953846-2953971,2954055-2954162,2954290-2954507,2954600-2954771,2954850-2955059	AT1G09160.1 CDS Protein phosphatase 2C family protein [TAIR10] CDS gene_syn T12M4.15, T12M4_15 go_component plasma membrane|GO:0005886|17644812|IDA go_function catalytic activity|GO:0003824||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Protein phosphatase 2C family protein note Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G68410.2); Has 5570 Blast hits to 5569 proteins in 486 species: Archae - 4; Bacteria - 416; Metazoa - 1194; Fungi - 467; Plants - 2390; Viruses - 7; Other Eukaryotes - 1092 (source: NCBI BLink). protein_id AT1G09160.1p transcript_id AT1G09160.1 protein_id AT1G09160.1p transcript_id AT1G09160.1
At1g09160	chr1:002953199	0.0	C/2953199-2953418,2953530-2953762,2953846-2953971,2954055-2954162,2954290-2954507,2954600-2954771,2954850-2955059	AT1G09160.2 CDS Protein phosphatase 2C family protein [TAIR10] CDS gene_syn T12M4.15, T12M4_15 go_component plasma membrane|GO:0005886|17644812|IDA go_function catalytic activity|GO:0003824||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Protein phosphatase 2C family protein note Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G68410.2); Has 5570 Blast hits to 5569 proteins in 486 species: Archae - 4; Bacteria - 416; Metazoa - 1194; Fungi - 467; Plants - 2390; Viruses - 7; Other Eukaryotes - 1092 (source: NCBI BLink). protein_id AT1G09160.2p transcript_id AT1G09160.2 protein_id AT1G09160.2p transcript_id AT1G09160.2
At1g09170	chr1:002956589	0.0	C/2956589-2956724,2956806-2957269,2957371-2957571,2957667-2957830,2957969-2958222,2958484-2958640,2958846-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.1 CDS P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain [TAIR10] CDS gene_syn T12M4.14, T12M4_14 go_process microtubule-based movement|GO:0007018||IEA go_function microtubule motor activity|GO:0003777||IEA go_function ATP binding|GO:0005524||IEA go_function microtubule motor activity|GO:0003777||ISS product P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain note P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: shoot, male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1); Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0; Bacteria - 101; Metazoa - 5767; Fungi - 1479; Plants - 1905; Viruses - 0; Other Eukaryotes - 2731 (source: NCBI BLink). protein_id AT1G09170.1p transcript_id AT1G09170.1 protein_id AT1G09170.1p transcript_id AT1G09170.1
AT1G09170	chr1:002956589	0.0	C/2956589-2956724,2956806-2957269,2957371-2957571,2957667-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.5 AT1G09170.5 CDS P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
AT1G09170	chr1:002957227	0.0	C/2957227-2957571,2957667-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.2 AT1G09170.2 CDS P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
AT1G09170	chr1:002957282	0.0	C/2957282-2957284,2957371-2957571,2957667-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.4 AT1G09170.4 CDS P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
AT1G09170	chr1:002957559	0.0	C/2957559-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.3 AT1G09170.3 CDS P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
AT1G09170	chr1:002957559	0.0	C/2957559-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.7 AT1G09170.7 CDS P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
AT1G09170	chr1:002957925	0.0	C/2957925-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.6 AT1G09170.6 CDS P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
AT1G09170	chr1:002957925	0.0	C/2957925-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.8 AT1G09170.8 CDS P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
At1g09176	chr1:002964152	0.0	W/2964152-2964604	AT1G09176.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G09176.1p transcript_id AT1G09176.1 protein_id AT1G09176.1p transcript_id AT1G09176.1
At1g09180	chr1:002965147	0.0	W/2965147-2965275,2965384-2965515,2965621-2965941	AT1G09180.1 CDS secretion-associated RAS super family 1 [TAIR10] CDS gene_syn ATSAR1, ATSARA1A, SARA1A, SECRETION-ASSOCIATED RAS 1, T12M4.12, T12M4_12, secretion-associated RAS super family 1 gene SARA1A function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. go_component chloroplast|GO:0009507|15028209|IDA go_process intracellular protein transport|GO:0006886||IEA go_function GTP binding|GO:0005525|12644670|ISS product secretion-associated RAS super family 1 note secretion-associated RAS super family 1 (SARA1A); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: secretion-associated RAS 1B (TAIR:AT1G56330.1); Has 6779 Blast hits to 6777 proteins in 381 species: Archae - 2; Bacteria - 35; Metazoa - 3324; Fungi - 1254; Plants - 1081; Viruses - 0; Other Eukaryotes - 1083 (source: NCBI BLink). protein_id AT1G09180.1p transcript_id AT1G09180.1 protein_id AT1G09180.1p transcript_id AT1G09180.1
At1g09190	chr1:002966263	0.0	C/2966263-2967717	AT1G09190.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T12M4.11, T12M4_11 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G09190.1p transcript_id AT1G09190.1 protein_id AT1G09190.1p transcript_id AT1G09190.1
AT1G09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2970721,2971078-2971138	AT1G09195.14 AT1G09195.14 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2970721,2971078-2971138	AT1G09195.15 AT1G09195.15 CDS Ppx-GppA phosphatase
At1g09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2970721,2971078-2971138	AT1G09195.1 CDS Ppx-GppA phosphatase [TAIR10] CDS go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Ppx/GppA phosphatase (InterPro:IPR003695); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G09195.1p transcript_id AT1G09195.1 protein_id AT1G09195.1p transcript_id AT1G09195.1
AT1G09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.10 AT1G09195.10 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.11 AT1G09195.11 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.12 AT1G09195.12 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.13 AT1G09195.13 CDS Ppx-GppA phosphatase
At1g09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.2 CDS Ppx-GppA phosphatase [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Ppx/GppA phosphatase (InterPro:IPR003695). protein_id AT1G09195.2p transcript_id AT1G09195.2 protein_id AT1G09195.2p transcript_id AT1G09195.2
AT1G09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.8 AT1G09195.8 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002969232	0.0	C/2969232-2969282,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.6 AT1G09195.6 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2970721,2971078-2971138	AT1G09195.9 AT1G09195.9 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.3 AT1G09195.3 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.4 AT1G09195.4 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.5 AT1G09195.5 CDS Ppx-GppA phosphatase
AT1G09195	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.7 AT1G09195.7 CDS Ppx-GppA phosphatase
At1g09200	chr1:002971722	0.0	C/2971722-2972132	AT1G09200.1 CDS Histone superfamily protein [TAIR10] CDS gene_syn T12M4.9 go_component nucleosome|GO:0000786||IEA go_component chloroplast|GO:0009507||IEA go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 14599 Blast hits to 14591 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10602; Fungi - 2038; Plants - 1256; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink). protein_id AT1G09200.1p transcript_id AT1G09200.1 protein_id AT1G09200.1p transcript_id AT1G09200.1
At1g09210	chr1:002973217	0.0	C/2973217-2973228,2973326-2973442,2973527-2973556,2973718-2973765,2973859-2973954,2974040-2974107,2974615-2974672,2974755-2974841,2974928-2975032,2975206-2975464,2975562-2975754,2975849-2975956,2976562-2976655	AT1G09210.1 CDS calreticulin 1b [TAIR10] CDS gene_syn AtCRT1b, CRT1b, T12M4.8, T12M4_8, calreticulin 1b gene CRT1b function Encodes one of three Arabidopsis calreticulins. go_component vacuole|GO:0005773|15539469|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_function calcium ion binding|GO:0005509||IEA go_function unfolded protein binding|GO:0051082||IEA go_component mitochondrion|GO:0005739|12492832|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process response to oxidative stress|GO:0006979|12492832|IDA go_function calcium ion binding|GO:0005509||ISS product calreticulin 1b note calreticulin 1b (CRT1b); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1a (TAIR:AT1G56340.1); Has 5507 Blast hits to 3456 proteins in 438 species: Archae - 6; Bacteria - 291; Metazoa - 2217; Fungi - 528; Plants - 416; Viruses - 176; Other Eukaryotes - 1873 (source: NCBI BLink). protein_id AT1G09210.1p transcript_id AT1G09210.1 protein_id AT1G09210.1p transcript_id AT1G09210.1
At1g09220	chr1:002977952	0.0	C/2977952-2979466	AT1G09220.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn T12M4.7, T12M4_7 go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 31696 Blast hits to 12551 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 19; Plants - 31380; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink). protein_id AT1G09220.1p transcript_id AT1G09220.1 protein_id AT1G09220.1p transcript_id AT1G09220.1
At1g09230	chr1:002979637	0.0	C/2979637-2979723,2979877-2979942,2980022-2980080,2980211-2980298,2980605-2980778,2980851-2981012,2981258-2981398,2981541-2981622,2981778-2981987,2982090-2982161,2982376-2982563	AT1G09230.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn T12M4.6, T12M4_6 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 908 Blast hits to 898 proteins in 138 species: Archae - 0; Bacteria - 6; Metazoa - 655; Fungi - 76; Plants - 104; Viruses - 1; Other Eukaryotes - 66 (source: NCBI BLink). protein_id AT1G09230.1p transcript_id AT1G09230.1 protein_id AT1G09230.1p transcript_id AT1G09230.1
AT1G09230	chr1:002979637	0.0	C/2979637-2979723,2979877-2979942,2980022-2980080,2980211-2980298,2980605-2980778,2980851-2981012,2981258-2981398,2981541-2981622,2981778-2981987,2982090-2982205	AT1G09230.2 AT1G09230.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
AT1G09230	chr1:002979862	0.0	C/2979862-2979942,2980022-2980080,2980211-2980298,2980605-2980778,2980851-2981012,2981258-2981398,2981541-2981622,2981778-2981987,2982090-2982161,2982376-2982563	AT1G09230.3 AT1G09230.3 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g09240	chr1:002984950	0.0	W/2984950-2985912	AT1G09240.1 CDS nicotianamine synthase 3 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, ATNAS3, NAS3, T12M4.5, T12M4_5, nicotianamine synthase 3 gene NAS3 function Encodes a nicotianamine synthase. go_process nicotianamine biosynthetic process|GO:0030418||IDA go_function nicotianamine synthase activity|GO:0030410||IDA product nicotianamine synthase 3 note nicotianamine synthase 3 (NAS3); CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: nicotianamine synthase 4 (TAIR:AT1G56430.1); Has 198 Blast hits to 195 proteins in 46 species: Archae - 20; Bacteria - 10; Metazoa - 0; Fungi - 20; Plants - 147; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G09240.1p transcript_id AT1G09240.1 protein_id AT1G09240.1p transcript_id AT1G09240.1
At1g09245	chr1:002986948	0.0	C/2986948-2987367	AT1G09245.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT5G39493.1); Has 107 Blast hits to 107 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09245.1p transcript_id AT1G09245.1 protein_id AT1G09245.1p transcript_id AT1G09245.1
At1g09250	chr1:002989509	0.0	W/2989509-2990132	AT1G09250.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn T12M4.4, T12M4_4 go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_process regulation of transcription|GO:0045449||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G17100.2); Has 250 Blast hits to 250 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09250.1p transcript_id AT1G09250.1 protein_id AT1G09250.1p transcript_id AT1G09250.1
At1g09260	chr1:002993404	0.0	W/2993404-2993820	AT1G09260.1 CDS Chaperone DnaJ-domain superfamily protein [TAIR10] CDS gene_syn T12M4.3, T12M4_3 go_process protein folding|GO:0006457||IEA go_function heat shock protein binding|GO:0031072||IEA go_function unfolded protein binding|GO:0051082||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product Chaperone DnaJ-domain superfamily protein note Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 2956 Blast hits to 2955 proteins in 867 species: Archae - 40; Bacteria - 1338; Metazoa - 620; Fungi - 249; Plants - 426; Viruses - 3; Other Eukaryotes - 280 (source: NCBI BLink). protein_id AT1G09260.1p transcript_id AT1G09260.1 protein_id AT1G09260.1p transcript_id AT1G09260.1
At1g09270	chr1:002994506	0.0	W/2994506-2994736,2995147-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.1 CDS importin alpha isoform 4 [TAIR10] CDS gene_syn IMPA-4, T12M4.2, T12M4_2, importin alpha isoform 4 gene IMPA-4 function Protein interacts with Agrobacterium proteins VirD2 and VirE2. go_component nucleus|GO:0005634||IEA go_component nuclear pore|GO:0005643||IEA go_component cytoplasm|GO:0005737||IEA go_function binding|GO:0005488||IEA go_function protein transporter activity|GO:0008565||IEA go_process intracellular protein transport|GO:0006886||ISS go_process symbiont intracellular protein transport in host|GO:0030581|18836040|IPI go_process host response to induction by symbiont of tumor, nodule or growth in host|GO:0080034|18836040|IMP go_function protein transporter activity|GO:0008565||ISS product importin alpha isoform 4 note importin alpha isoform 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, symbiont intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2); Has 4272 Blast hits to 3104 proteins in 282 species: Archae - 2; Bacteria - 6; Metazoa - 1653; Fungi - 615; Plants - 1226; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink). protein_id AT1G09270.1p transcript_id AT1G09270.1 protein_id AT1G09270.1p transcript_id AT1G09270.1
At1g09270	chr1:002994506	0.0	W/2994506-2994736,2995147-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.2 CDS importin alpha isoform 4 [TAIR10] CDS gene_syn IMPA-4, T12M4.2, T12M4_2, importin alpha isoform 4 gene IMPA-4 function Protein interacts with Agrobacterium proteins VirD2 and VirE2. go_component nucleus|GO:0005634||IEA go_component nuclear pore|GO:0005643||IEA go_component cytoplasm|GO:0005737||IEA go_function binding|GO:0005488||IEA go_function protein transporter activity|GO:0008565||IEA go_process intracellular protein transport|GO:0006886||ISS go_process symbiont intracellular protein transport in host|GO:0030581|18836040|IPI go_process host response to induction by symbiont of tumor, nodule or growth in host|GO:0080034|18836040|IMP go_function protein transporter activity|GO:0008565||ISS product importin alpha isoform 4 note importin alpha isoform 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, symbiont intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2); Has 4272 Blast hits to 3104 proteins in 282 species: Archae - 2; Bacteria - 6; Metazoa - 1653; Fungi - 615; Plants - 1226; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink). protein_id AT1G09270.2p transcript_id AT1G09270.2 protein_id AT1G09270.2p transcript_id AT1G09270.2
At1g09270	chr1:002995162	0.0	W/2995162-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.3 CDS importin alpha isoform 4 [TAIR10] CDS gene_syn IMPA-4, T12M4.2, T12M4_2, importin alpha isoform 4 gene IMPA-4 function Protein interacts with Agrobacterium proteins VirD2 and VirE2. go_function binding|GO:0005488||IEA go_process intracellular protein transport|GO:0006886||ISS go_process symbiont intracellular protein transport in host|GO:0030581|18836040|IPI go_process host response to induction by symbiont of tumor, nodule or growth in host|GO:0080034|18836040|IMP go_function protein transporter activity|GO:0008565||ISS product importin alpha isoform 4 note importin alpha isoform 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, symbiont intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09270.3p transcript_id AT1G09270.3 protein_id AT1G09270.3p transcript_id AT1G09270.3
At1g09280	chr1:002998209	0.0	C/2998209-2998915,2999028-2999127,2999204-2999336,2999426-2999508,2999587-2999668,2999755-2999935,3000028-3000133,3000556-3000717,3001062-3001253	AT1G09280.1 CDS rhodanese-like domain protein [TAIR10] CDS gene_syn T12M4.1, T12M4_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). protein_id AT1G09280.1p transcript_id AT1G09280.1 protein_id AT1G09280.1p transcript_id AT1G09280.1
At1g09290	chr1:003001682	0.0	C/3001682-3001840,3001926-3002102,3002192-3002321,3002641-3002827,3002922-3003060,3003260-3003306,3003508-3003715	AT1G09290.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 73 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G09290.1p transcript_id AT1G09290.1 protein_id AT1G09290.1p transcript_id AT1G09290.1
AT1G09295	chr1:003001728	0.0	W/3001728-3001815,3002013-3002112,3002200-3002206	AT1G09295.1 AT1G09295.1 CDS hypothetical protein
At1g09300	chr1:003003981	0.0	W/3003981-3004028,3004361-3004435,3004515-3004778,3004868-3004960,3005073-3005279,3005775-3005878,3005993-3006059,3006141-3006248,3006612-3006704,3006999-3007083,3007290-3007360,3007686-3007741,3007921-3008131	AT1G09300.1 CDS Metallopeptidase M24 family protein [TAIR10] CDS gene_syn T31J12.2, T31J12_2 go_component mitochondrion|GO:0005739||IEA go_process proteolysis|GO:0006508||IEA go_process cellular process|GO:0009987||IEA go_function aminopeptidase activity|GO:0004177||IEA go_function metalloexopeptidase activity|GO:0008235||IEA go_function manganese ion binding|GO:0030145||IEA go_function metallopeptidase activity|GO:0008237||ISS product Metallopeptidase M24 family protein note Metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT4G29490.1); Has 16476 Blast hits to 16448 proteins in 2755 species: Archae - 330; Bacteria - 11247; Metazoa - 589; Fungi - 576; Plants - 221; Viruses - 0; Other Eukaryotes - 3513 (source: NCBI BLink). protein_id AT1G09300.1p transcript_id AT1G09300.1 protein_id AT1G09300.1p transcript_id AT1G09300.1
At1g09300	chr1:003004485	0.0	W/3004485-3004778,3004868-3004960,3005073-3005279,3005775-3005878,3005993-3006059,3006141-3006248,3006612-3006704,3006999-3007083,3007290-3007360,3007686-3007741,3007921-3008131	AT1G09300.2 CDS Metallopeptidase M24 family protein [TAIR10] CDS gene_syn T31J12.2, T31J12_2 go_process proteolysis|GO:0006508||IEA go_process cellular process|GO:0009987||IEA go_function aminopeptidase activity|GO:0004177||IEA go_function metalloexopeptidase activity|GO:0008235||IEA go_function manganese ion binding|GO:0030145||IEA go_function metallopeptidase activity|GO:0008237||ISS product Metallopeptidase M24 family protein note Metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT4G29490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G09300.2p transcript_id AT1G09300.2 protein_id AT1G09300.2p transcript_id AT1G09300.2
At1g09310	chr1:003009109	0.0	W/3009109-3009648	AT1G09310.1 CDS plant/protein (Protein of unknown function, DUF538) [TAIR10] CDS gene_syn T31J12.3, T31J12_3 go_component apoplast|GO:0048046|18538804|IDA go_process biological_process|GO:0008150||ND product Protein of unknown function, DUF538 note Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G56580.1); Has 409 Blast hits to 409 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09310.1p transcript_id AT1G09310.1 protein_id AT1G09310.1p transcript_id AT1G09310.1
At1g09320	chr1:003010270	0.0	C/3010270-3010284,3010430-3010885,3011018-3011494,3011623-3012228	AT1G09320.1 CDS agenet domain-containing protein [TAIR10] CDS gene_syn T31J12.4, T31J12_4 go_component chloroplast|GO:0009507||IEA go_function RNA binding|GO:0003723||IEA go_process biological_process|GO:0008150||ND product agenet domain-containing protein note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT3G06520.1); Has 769 Blast hits to 316 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 3; Plants - 733; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT1G09320.1p transcript_id AT1G09320.1 protein_id AT1G09320.1p transcript_id AT1G09320.1
At1g09330	chr1:003013003	0.0	C/3013003-3013091,3013246-3013372,3014044-3014103,3014225-3014428,3014518-3014580,3014886-3014903	AT1G09330.1 CDS golgi apparatus membrane protein-like protein ECHIDNA protein [TAIR10] CDS gene_syn T31J12.5, T31J12_5 go_component integral to membrane|GO:0016021||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). protein_id AT1G09330.1p transcript_id AT1G09330.1 protein_id AT1G09330.1p transcript_id AT1G09330.1
AT1G09330	chr1:003013993	0.0	C/3013993-3014103,3014225-3014428,3014518-3014580,3014886-3014903	AT1G09330.2 AT1G09330.2 CDS golgi apparatus membrane protein-like protein ECHIDNA protein
At1g09340	chr1:003015473	0.0	W/3015473-3015574,3016035-3016169,3016248-3016334,3016458-3016548,3016660-3016714,3016816-3016876,3017045-3017266,3017408-3017524,3017677-3017766,3017859-3018035	AT1G09340.1 CDS chloroplast RNA binding [TAIR10] CDS gene_syn CHLOROPLAST RNA BINDING, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, CRB, CRUCIFERIN B, CSP41B, chloroplast RNA binding gene CRB function Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes. go_component vacuole|GO:0005773|15539469|IDA go_component peroxisome|GO:0005777|17951448|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component plastoglobule|GO:0010287|16414959|IDA go_component membrane|GO:0016020|17432890|IDA go_component apoplast|GO:0048046|18538804|IDA go_process defense response to bacterium|GO:0042742|17028151|IEP go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function coenzyme binding|GO:0050662||IEA go_component ribosome|GO:0005840|18398686|IDA go_component plastoglobule|GO:0010287|16461379|IDA go_component stromule|GO:0010319|16923014|IDA go_process rRNA processing|GO:0006364|18398686|IGI go_process circadian rhythm|GO:0007623|17617174|IEP go_process circadian rhythm|GO:0007623|17617174|IMP go_process response to cold|GO:0009409|16923014|IEP go_process chloroplast organization|GO:0009658|17617174|IMP go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA product chloroplast RNA binding note chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink). protein_id AT1G09340.1p transcript_id AT1G09340.1 protein_id AT1G09340.1p transcript_id AT1G09340.1
AT1G09340	chr1:003015806	0.0	W/3015806-3015910,3016035-3016169,3016248-3016334,3016458-3016548,3016660-3016714,3016816-3016876,3017045-3017266,3017408-3017524,3017677-3017766,3017859-3018035	AT1G09340.2 AT1G09340.2 CDS chloroplast RNA binding
At1g09350	chr1:003019888	0.0	W/3019888-3020193,3020284-3020607,3020761-3020912,3020992-3021214	AT1G09350.1 CDS galactinol synthase 3 [TAIR10] CDS gene_syn AtGolS3, F14J9.1, F14J9_1, GolS3, galactinol synthase 3 gene GolS3 go_component cellular_component|GO:0005575||ND go_process response to cold|GO:0009409|19502356|IEP go_process carbohydrate biosynthetic process|GO:0016051||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS product galactinol synthase 3 note galactinol synthase 3 (GolS3); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galactinol synthase 2 (TAIR:AT1G56600.1); Has 1260 Blast hits to 1259 proteins in 288 species: Archae - 0; Bacteria - 98; Metazoa - 258; Fungi - 282; Plants - 479; Viruses - 73; Other Eukaryotes - 70 (source: NCBI BLink). protein_id AT1G09350.1p transcript_id AT1G09350.1 protein_id AT1G09350.1p transcript_id AT1G09350.1
AT1G09350	chr1:003020278	0.0	W/3020278-3020607,3020761-3020912,3020992-3021214	AT1G09350.2 AT1G09350.2 CDS galactinol synthase 3
At1g09360	chr1:003021802	0.0	W/3021802-3022368	AT1G09360.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily protein [TAIR10] CDS gene_syn F14J9.2, F14J9_2 go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function pectinesterase inhibitor activity|GO:0046910||ISS product Plant invertase/pectin methylesterase inhibitor superfamily protein note Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G09370.1); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09360.1p transcript_id AT1G09360.1 protein_id AT1G09360.1p transcript_id AT1G09360.1
At1g09370	chr1:003024895	0.0	W/3024895-3025425	AT1G09370.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily protein [TAIR10] CDS gene_syn F14J9.3, F14J9_3 go_component endomembrane system|GO:0012505||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_process biological_process|GO:0008150||ND product Plant invertase/pectin methylesterase inhibitor superfamily protein note Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, cotyledon; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G09360.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09370.1p transcript_id AT1G09370.1 protein_id AT1G09370.1p transcript_id AT1G09370.1
At1g09380	chr1:003026351	0.0	C/3026351-3026552,3026648-3026799,3026887-3027045,3027159-3027411,3027498-3027614,3027691-3027753,3029144-3029322	AT1G09380.1 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn F14J9.4, F14J9_4 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT5G07050.1); Has 5897 Blast hits to 5875 proteins in 1081 species: Archae - 84; Bacteria - 3492; Metazoa - 6; Fungi - 4; Plants - 1243; Viruses - 0; Other Eukaryotes - 1068 (source: NCBI BLink). protein_id AT1G09380.1p transcript_id AT1G09380.1 protein_id AT1G09380.1p transcript_id AT1G09380.1
At1g09390	chr1:003031264	0.0	W/3031264-3031519,3032117-3032308,3032387-3032553,3032666-3032930,3033183-3033415	AT1G09390.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F14J9.5, F14J9_5 go_component chloroplast stroma|GO:0009570|16207701|IDA go_process glycerol biosynthetic process|GO:0006114||IEA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G56670.1); Has 3339 Blast hits to 3301 proteins in 169 species: Archae - 0; Bacteria - 205; Metazoa - 0; Fungi - 26; Plants - 3101; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G09390.1p transcript_id AT1G09390.1 protein_id AT1G09390.1p transcript_id AT1G09390.1
AT1G09400	chr1:003033676	0.0	C/3033676-3034193,3034276-3034434,3034519-3034639	AT1G09400.2 AT1G09400.2 CDS FMN-linked oxidoreductases superfamily protein
At1g09400	chr1:003033676	0.0	C/3033676-3034193,3034276-3034434,3034519-3034649,3034725-3034865,3034968-3034993	AT1G09400.1 CDS FMN-linked oxidoreductases superfamily protein [TAIR10] CDS gene_syn F14J9.6, F14J9_6 go_component mitochondrion|GO:0005739||IEA go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function FMN binding|GO:0010181||IEA go_function oxidoreductase activity|GO:0016491||IEA product FMN-linked oxidoreductases superfamily protein note FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase 2 (TAIR:AT1G76690.1); Has 13164 Blast hits to 13141 proteins in 2055 species: Archae - 127; Bacteria - 9794; Metazoa - 29; Fungi - 860; Plants - 453; Viruses - 0; Other Eukaryotes - 1901 (source: NCBI BLink). protein_id AT1G09400.1p transcript_id AT1G09400.1 protein_id AT1G09400.1p transcript_id AT1G09400.1
At1g09410	chr1:003035443	0.0	W/3035443-3037560	AT1G09410.1 CDS pentatricopeptide (PPR) repeat-containing protein [TAIR10] CDS gene_syn F14J9.7, F14J9_7 go_process biological_process|GO:0008150||ND product pentatricopeptide (PPR) repeat-containing protein note pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G56690.1); Has 49310 Blast hits to 14061 proteins in 238 species: Archae - 0; Bacteria - 33; Metazoa - 32; Fungi - 36; Plants - 48709; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink). protein_id AT1G09410.1p transcript_id AT1G09410.1 protein_id AT1G09410.1p transcript_id AT1G09410.1
At1g09415	chr1:003037910	0.0	C/3037910-3038248	AT1G09415.1 CDS NIM1-interacting 3 [TAIR10] CDS gene_syn NIM1-interacting 3, NIMIN-3 gene NIMIN-3 function encodes a kinase that physically interacts with NPR1/NIM1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product NIM1-interacting 3 note NIM1-interacting 3 (NIMIN-3); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G09415.1p transcript_id AT1G09415.1 protein_id AT1G09415.1p transcript_id AT1G09415.1
At1g09421	chr1:003038631	0.0	W/3038631-3038860,3038944-3039064,3039132-3039326	AT1G09421.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G09420 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G09421.1
At1g09420	chr1:003038640	0.0	C/3038640-3038877,3038971-3039171,3039247-3039443,3039514-3039670,3039790-3039824,3039924-3040032,3040113-3040318,3040450-3040564,3040649-3040743,3040841-3041088,3041175-3041379,3041614-3041715	AT1G09420.2 CDS glucose-6-phosphate dehydrogenase 4 [TAIR10] CDS gene_syn F14J9.8, F14J9_8, G6PD4, glucose-6-phosphate dehydrogenase 4 gene G6PD4 function Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally. go_process glucose metabolic process|GO:0006006||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_component chloroplast|GO:0009507|15634201|ISS go_process glucose metabolic process|GO:0006006||ISS go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS product glucose-6-phosphate dehydrogenase 4 note glucose-6-phosphate dehydrogenase 4 (G6PD4); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glucose metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1). protein_id AT1G09420.2p transcript_id AT1G09420.2 protein_id AT1G09420.2p transcript_id AT1G09420.2
At1g09420	chr1:003038640	0.0	C/3038640-3038877,3038971-3039171,3039247-3039449,3039550-3039670,3039790-3039824,3039924-3040032,3040113-3040318,3040450-3040564,3040649-3040743,3040841-3041088,3041175-3041379,3041614-3041715	AT1G09420.1 CDS glucose-6-phosphate dehydrogenase 4 [TAIR10] CDS gene_syn F14J9.8, F14J9_8, G6PD4, glucose-6-phosphate dehydrogenase 4 gene G6PD4 function Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally. go_process glucose metabolic process|GO:0006006||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_component chloroplast|GO:0009507|15634201|ISS go_process glucose metabolic process|GO:0006006||ISS go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS product glucose-6-phosphate dehydrogenase 4 note glucose-6-phosphate dehydrogenase 4 (G6PD4); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glucose metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1); Has 8248 Blast hits to 8228 proteins in 2347 species: Archae - 0; Bacteria - 5681; Metazoa - 875; Fungi - 180; Plants - 375; Viruses - 4; Other Eukaryotes - 1133 (source: NCBI BLink). protein_id AT1G09420.1p transcript_id AT1G09420.1 protein_id AT1G09420.1p transcript_id AT1G09420.1
At1g09430	chr1:003042135	0.0	W/3042135-3042233,3042490-3042666,3042743-3042904,3043016-3043096,3043367-3043418,3043516-3043630,3043722-3043803,3043923-3044018,3044218-3044319,3044412-3044528,3044648-3044764,3044904-3044978	AT1G09430.1 CDS ATP-citrate lyase A-3 [TAIR10] CDS gene_syn ACLA-3, ATP-citrate lyase A-3, F14J9.9, F14J9_9 gene ACLA-3 function Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity. go_component citrate lyase complex|GO:0009346|12376641|ISS go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS go_function ATP citrate synthase activity|GO:0003878|12376641|ISS product ATP-citrate lyase A-3 note ATP-citrate lyase A-3 (ACLA-3); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 5303 Blast hits to 5302 proteins in 1635 species: Archae - 133; Bacteria - 3235; Metazoa - 230; Fungi - 139; Plants - 96; Viruses - 0; Other Eukaryotes - 1470 (source: NCBI BLink). protein_id AT1G09430.1p transcript_id AT1G09430.1 protein_id AT1G09430.1p transcript_id AT1G09430.1
At1g09440	chr1:003045513	0.0	C/3045513-3045599,3045684-3045896,3045972-3046101,3046185-3046355,3046436-3046558,3046634-3046738,3046822-3047393	AT1G09440.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F14J9.10, F14J9_10 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G56720.3); Has 119661 Blast hits to 118258 proteins in 4456 species: Archae - 117; Bacteria - 14198; Metazoa - 43932; Fungi - 10102; Plants - 33276; Viruses - 377; Other Eukaryotes - 17659 (source: NCBI BLink). protein_id AT1G09440.1p transcript_id AT1G09440.1 protein_id AT1G09440.1p transcript_id AT1G09440.1
AT1G09440	chr1:003045513	0.0	C/3045513-3045599,3045684-3045896,3045972-3046101,3046185-3046355,3046436-3046558,3046634-3046738,3046822-3047393	AT1G09440.2 AT1G09440.2 CDS Protein kinase superfamily protein
At1g09450	chr1:003049066	0.0	W/3049066-3049078,3049170-3049284,3049384-3049464,3049678-3049765,3049957-3050513,3050692-3050815,3051143-3051252,3051371-3051479,3051582-3051674,3051770-3051831,3051915-3052045,3052149-3052219,3052307-3052359,3052578-3052644,3052733-3052858	AT1G09450.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F14J9.11, F14J9_11 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function protein kinase activity|GO:0004672||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719); Has 302 Blast hits to 302 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 113; Plants - 37; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). protein_id AT1G09450.1p transcript_id AT1G09450.1 protein_id AT1G09450.1p transcript_id AT1G09450.1
At1g09460	chr1:003053901	0.0	W/3053901-3054534,3054637-3054784,3054880-3055090	AT1G09460.1 CDS Carbohydrate-binding X8 domain superfamily protein [TAIR10] CDS gene_syn F14J9.12, F14J9_12 go_component endomembrane system|GO:0012505||IEA product Carbohydrate-binding X8 domain superfamily protein note Carbohydrate-binding X8 domain superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G30933.1); Has 28400 Blast hits to 14800 proteins in 1032 species: Archae - 269; Bacteria - 5437; Metazoa - 8038; Fungi - 2740; Plants - 5953; Viruses - 1223; Other Eukaryotes - 4740 (source: NCBI BLink). protein_id AT1G09460.1p transcript_id AT1G09460.1 protein_id AT1G09460.1p transcript_id AT1G09460.1
At1g09470	chr1:003055391	0.0	C/3055391-3055558,3055636-3055737,3055824-3056285,3056552-3056659,3056761-3056931	AT1G09470.1 CDS myosin heavy chain, cardiac protein [TAIR10] CDS gene_syn F14J9.13, F14J9_13 go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1); Has 55019 Blast hits to 30094 proteins in 2088 species: Archae - 730; Bacteria - 6553; Metazoa - 28961; Fungi - 4800; Plants - 2559; Viruses - 111; Other Eukaryotes - 11305 (source: NCBI BLink). protein_id AT1G09470.1p transcript_id AT1G09470.1 protein_id AT1G09470.1p transcript_id AT1G09470.1
At1g09470	chr1:003055391	0.0	C/3055391-3055558,3055636-3055762,3055852-3056285,3056552-3056659,3056761-3056931	AT1G09470.2 CDS myosin heavy chain, cardiac protein [TAIR10] CDS gene_syn F14J9.13, F14J9_13 go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1). protein_id AT1G09470.2p transcript_id AT1G09470.2 protein_id AT1G09470.2p transcript_id AT1G09470.2
AT1G09470	chr1:003055391	0.0	C/3055391-3055558,3055636-3055762,3055852-3056285,3056552-3056659,3056761-3056931	AT1G09470.3 AT1G09470.3 CDS myosin heavy chain, cardiac protein
At1g09480	chr1:003057975	0.0	W/3057975-3058092,3058513-3058653,3059300-3059469,3059807-3059998,3060082-3060431,3060523-3060661	AT1G09480.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F14J9.14, F14J9_14 function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_component cellular_component|GO:0005575||ND go_process lignin biosynthetic process|GO:0009809||ISS go_function alcohol dehydrogenase (NAD) activity|GO:0004022|14745009|ISS go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1); Has 11337 Blast hits to 11295 proteins in 1830 species: Archae - 188; Bacteria - 4702; Metazoa - 514; Fungi - 973; Plants - 2502; Viruses - 52; Other Eukaryotes - 2406 (source: NCBI BLink). protein_id AT1G09480.1p transcript_id AT1G09480.1 protein_id AT1G09480.1p transcript_id AT1G09480.1
AT1G09480	chr1:003058536	0.0	W/3058536-3058653,3059300-3059469,3059807-3059998,3060082-3060431,3060523-3060661	AT1G09480.2 AT1G09480.2 CDS NAD(P)-binding Rossmann-fold superfamily protein
At1g09483	chr1:003061248	0.0	C/3061248-3061418,3061500-3061601,3061685-3061729	AT1G09483.1 CDS myosin heavy chain, cardiac protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09470.1); Has 48 Blast hits to 48 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09483.1p transcript_id AT1G09483.1 protein_id AT1G09483.1p transcript_id AT1G09483.1
At1g09486	chr1:003062617	0.0	C/3062617-3062748,3063060-3063269	AT1G09486.1 CDS 60S ribosomal protein L21 [TAIR10] pseudogene
At1g09490	chr1:003064172	0.0	W/3064172-3064289,3064705-3064874,3064956-3065147,3065226-3065575,3065677-3065815	AT1G09490.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F14J9.15, F14J9_15 function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565 go_component endomembrane system|GO:0012505||IEA go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_process lignin biosynthetic process|GO:0009809||ISS go_function alcohol dehydrogenase (NAD) activity|GO:0004022|14745009|ISS go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09480.1); Has 10413 Blast hits to 10399 proteins in 1719 species: Archae - 172; Bacteria - 4069; Metazoa - 410; Fungi - 939; Plants - 2479; Viruses - 15; Other Eukaryotes - 2329 (source: NCBI BLink). protein_id AT1G09490.1p transcript_id AT1G09490.1 protein_id AT1G09490.1p transcript_id AT1G09490.1
At1g09490	chr1:003064680	0.0	W/3064680-3064874,3064956-3065147,3065226-3065575,3065677-3065815	AT1G09490.2 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F14J9.15, F14J9_15 function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565 go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_process lignin biosynthetic process|GO:0009809||ISS go_function alcohol dehydrogenase (NAD) activity|GO:0004022|14745009|ISS go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G09490.2p transcript_id AT1G09490.2 protein_id AT1G09490.2p transcript_id AT1G09490.2
At1g09500	chr1:003066811	0.0	W/3066811-3066928,3067341-3067513,3067617-3067808,3067891-3068240,3068340-3068484	AT1G09500.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F14J9.16, F14J9_16 function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase go_component endomembrane system|GO:0012505||IEA go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_process lignin biosynthetic process|GO:0009809||ISS go_function alcohol dehydrogenase (NAD) activity|GO:0004022|14745009|ISS go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09510.1); Has 9627 Blast hits to 9614 proteins in 1666 species: Archae - 148; Bacteria - 3563; Metazoa - 355; Fungi - 930; Plants - 2402; Viruses - 50; Other Eukaryotes - 2179 (source: NCBI BLink). protein_id AT1G09500.1p transcript_id AT1G09500.1 protein_id AT1G09500.1p transcript_id AT1G09500.1
At1g09500	chr1:003066811	0.0	W/3066811-3066928,3067341-3067513,3067617-3067808,3067891-3068244	AT1G09500.3 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F14J9.16, F14J9_16 function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase go_component endomembrane system|GO:0012505||IEA go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_process lignin biosynthetic process|GO:0009809||ISS go_function alcohol dehydrogenase (NAD) activity|GO:0004022|14745009|ISS go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09500.3p transcript_id AT1G09500.3 protein_id AT1G09500.3p transcript_id AT1G09500.3
At1g09500	chr1:003067325	0.0	W/3067325-3067513,3067617-3067808,3067891-3068240,3068340-3068484	AT1G09500.2 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F14J9.16, F14J9_16 function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_process lignin biosynthetic process|GO:0009809||ISS go_function alcohol dehydrogenase (NAD) activity|GO:0004022|14745009|ISS go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09510.1); Has 5984 Blast hits to 5972 proteins in 1034 species: Archae - 45; Bacteria - 1406; Metazoa - 103; Fungi - 845; Plants - 2285; Viruses - 7; Other Eukaryotes - 1293 (source: NCBI BLink). protein_id AT1G09500.2p transcript_id AT1G09500.2 protein_id AT1G09500.2p transcript_id AT1G09500.2
At1g09510	chr1:003069396	0.0	W/3069396-3069513,3069629-3069798,3069953-3070144,3070230-3070579,3070674-3070812	AT1G09510.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F14J9.17, F14J9_17 function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_component cellular_component|GO:0005575||ND go_process lignin biosynthetic process|GO:0009809||ISS go_function alcohol dehydrogenase (NAD) activity|GO:0004022|14745009|ISS go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09500.1); Has 11399 Blast hits to 11383 proteins in 1876 species: Archae - 216; Bacteria - 4771; Metazoa - 368; Fungi - 952; Plants - 2526; Viruses - 56; Other Eukaryotes - 2510 (source: NCBI BLink). protein_id AT1G09510.1p transcript_id AT1G09510.1 protein_id AT1G09510.1p transcript_id AT1G09510.1
At1g09520	chr1:003071248	0.0	C/3071248-3072030	AT1G09520.1 CDS hypothetical protein [TAIR10] CDS gene_syn F14J9.18, F14J9_18 go_component chloroplast|GO:0009507||IEA product unknown protein note LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G09520.1p transcript_id AT1G09520.1 protein_id AT1G09520.1p transcript_id AT1G09520.1
At1g09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.1 CDS phytochrome interacting factor 3 [TAIR10] CDS gene_syn F14J9.19, F14J9_19, PAP3, PHOTOCURRENT 1, PHYTOCHROME INTERACTING FACTOR 3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, POC1, phytochrome interacting factor 3, purple acid phosphatase 3 gene PIF3 function Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes. go_component nucleus|GO:0005634|9845368|IDA go_process signal transduction|GO:0007165|9845368|TAS go_process response to red or far red light|GO:0009639|10318970|IMP go_process de-etiolation|GO:0009704|18252845|IMP go_process gibberellic acid mediated signaling pathway|GO:0009740|18053005|IMP go_process red or far-red light signaling pathway|GO:0010017|10318970|IMP go_process positive regulation of anthocyanin metabolic process|GO:0031539|17319847|IMP go_function DNA binding|GO:0003677|17319847|IDA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function protein binding|GO:0005515|12826627|IPI go_function transcription regulator activity|GO:0030528|12897250|TAS go_function transcription regulator activity|GO:0030528|9845368|ISS go_function transcription regulator activity|GO:0030528|9845368|TAS product phytochrome interacting factor 3 note phytochrome interacting factor 3 (PIF3); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1); Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0; Bacteria - 2; Metazoa - 732; Fungi - 183; Plants - 3377; Viruses - 7; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G09530.1p transcript_id AT1G09530.1 protein_id AT1G09530.1p transcript_id AT1G09530.1
At1g09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.2 CDS phytochrome interacting factor 3 [TAIR10] CDS gene_syn F14J9.19, F14J9_19, PAP3, PHOTOCURRENT 1, PHYTOCHROME INTERACTING FACTOR 3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, POC1, phytochrome interacting factor 3, purple acid phosphatase 3 gene PIF3 function Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes. go_component nucleus|GO:0005634|9845368|IDA go_process signal transduction|GO:0007165|9845368|TAS go_process response to red or far red light|GO:0009639|10318970|IMP go_process de-etiolation|GO:0009704|18252845|IMP go_process gibberellic acid mediated signaling pathway|GO:0009740|18053005|IMP go_process red or far-red light signaling pathway|GO:0010017|10318970|IMP go_process positive regulation of anthocyanin metabolic process|GO:0031539|17319847|IMP go_function DNA binding|GO:0003677|17319847|IDA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function protein binding|GO:0005515|12826627|IPI go_function transcription regulator activity|GO:0030528|12897250|TAS go_function transcription regulator activity|GO:0030528|9845368|ISS go_function transcription regulator activity|GO:0030528|9845368|TAS product phytochrome interacting factor 3 note phytochrome interacting factor 3 (PIF3); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1); Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0; Bacteria - 2; Metazoa - 732; Fungi - 183; Plants - 3377; Viruses - 7; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G09530.2p transcript_id AT1G09530.2 protein_id AT1G09530.2p transcript_id AT1G09530.2
AT1G09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.3 AT1G09530.3 CDS phytochrome interacting factor 3
AT1G09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.4 AT1G09530.4 CDS phytochrome interacting factor 3
AT1G09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.5 AT1G09530.5 CDS phytochrome interacting factor 3
AT1G09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.6 AT1G09530.6 CDS phytochrome interacting factor 3
At1g09540	chr1:003086333	0.0	W/3086333-3086465,3086546-3086675,3086852-3087689	AT1G09540.1 CDS myb domain protein 61 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, ATMYB61, F14J9.20, F14J9_20, MYB61, myb domain protein 61 gene MYB61 function Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size. go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process regulation of stomatal movement|GO:0010119|16005292|IMP go_process seed coat development|GO:0010214|11752387|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb domain protein 61 note myb domain protein 61 (MYB61); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1); Has 8976 Blast hits to 8269 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 766; Fungi - 514; Plants - 5880; Viruses - 4; Other Eukaryotes - 1812 (source: NCBI BLink). protein_id AT1G09540.1p transcript_id AT1G09540.1 protein_id AT1G09540.1p transcript_id AT1G09540.1
At1g09550	chr1:003089733	0.0	C/3089733-3089792,3089883-3090028,3090354-3090456,3090545-3090622,3090707-3090760,3090847-3090907,3090994-3091118,3091224-3091310,3091401-3091474,3091575-3091704,3091805-3091887,3092089-3092254	AT1G09550.1 CDS Pectinacetylesterase family protein [TAIR10] CDS gene_syn F14J9.21, F14J9_21 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function carboxylesterase activity|GO:0004091||ISS product Pectinacetylesterase family protein note Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT1G57590.1); Has 515 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 30; Metazoa - 114; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). protein_id AT1G09550.1p transcript_id AT1G09550.1 protein_id AT1G09550.1p transcript_id AT1G09550.1
At1g09560	chr1:003093896	0.0	W/3093896-3094010,3094095-3094639	AT1G09560.1 CDS germin-like protein 5 [TAIR10] CDS gene_syn F14J9.22, F14J9_22, GLP5, germin-like protein 5 gene GLP5 function germin-like protein (GLP5) go_component cell wall|GO:0005618|14595688|IDA go_component nucleus|GO:0005634|14617066|IDA go_function manganese ion binding|GO:0030145||IEA go_function nutrient reservoir activity|GO:0045735||IEA go_process response to cold|GO:0009409|14617066|IEP product germin-like protein 5 note germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G09560.1p transcript_id AT1G09560.1 protein_id AT1G09560.1p transcript_id AT1G09560.1
At1g09570	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3098892	AT1G09570.2 CDS phytochrome A [TAIR10] CDS gene_syn ELONGATED HYPOCOTYL 8, F14J9.23, F14J9_23, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, phytochrome A gene PHYA function Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. go_component nucleus|GO:0005634|12119377|IDA go_component cytoplasm|GO:0005737|12119377|IDA go_component nuclear body|GO:0016604|16332538|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process gravitropism|GO:0009630|15695459|IMP go_process phototropism|GO:0009638|14686433|IMP go_process red light signaling pathway|GO:0010161|17076805|IMP go_process response to continuous far red light stimulus by the high-irradiance response system|GO:0010201|9351250|IMP go_process response to very low fluence red light stimulus|GO:0010203|9351250|IMP go_process response to far red light|GO:0010218|15665470|ISS go_process response to arsenic|GO:0046685|17335514|IMP go_function protein histidine kinase activity|GO:0004673||ISS go_function signal transducer activity|GO:0004871||ISS go_function G-protein coupled photoreceptor activity|GO:0008020||ISS go_function red or far-red light photoreceptor activity|GO:0009883|8400877|TAS product phytochrome A note phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G09570.2p transcript_id AT1G09570.2 protein_id AT1G09570.2p transcript_id AT1G09570.2
At1g09570	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099216	AT1G09570.1 CDS phytochrome A [TAIR10] CDS gene_syn ELONGATED HYPOCOTYL 8, F14J9.23, F14J9_23, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, phytochrome A gene PHYA function Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. go_component nucleus|GO:0005634|12119377|IDA go_component cytoplasm|GO:0005737|12119377|IDA go_component nuclear body|GO:0016604|16332538|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process gravitropism|GO:0009630|15695459|IMP go_process phototropism|GO:0009638|14686433|IMP go_process red light signaling pathway|GO:0010161|17076805|IMP go_process response to continuous far red light stimulus by the high-irradiance response system|GO:0010201|9351250|IMP go_process response to very low fluence red light stimulus|GO:0010203|9351250|IMP go_process response to far red light|GO:0010218|15665470|ISS go_process response to arsenic|GO:0046685|17335514|IMP go_function protein histidine kinase activity|GO:0004673||ISS go_function signal transducer activity|GO:0004871||ISS go_function G-protein coupled photoreceptor activity|GO:0008020||ISS go_function red or far-red light photoreceptor activity|GO:0009883|8400877|TAS product phytochrome A note phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1); Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337; Bacteria - 24139; Metazoa - 4; Fungi - 596; Plants - 4116; Viruses - 7; Other Eukaryotes - 1154 (source: NCBI BLink). protein_id AT1G09570.1p transcript_id AT1G09570.1 protein_id AT1G09570.1p transcript_id AT1G09570.1
AT1G09570	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099216	AT1G09570.4 AT1G09570.4 CDS phytochrome A
AT1G09570	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099216	AT1G09570.5 AT1G09570.5 CDS phytochrome A
AT1G09570	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099216	AT1G09570.6 AT1G09570.6 CDS phytochrome A
AT1G09570	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099223,3099423-3099427	AT1G09570.3 AT1G09570.3 CDS phytochrome A
At1g09575	chr1:003101851	0.0	C/3101851-3102348,3102452-3102832	AT1G09575.1 CDS calcium uniporter-like protein (DUF607) [TAIR10] CDS go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF607) note Protein of unknown function (DUF607); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF607) (TAIR:AT1G57610.2); Has 384 Blast hits to 384 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 56; Plants - 127; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). protein_id AT1G09575.1p transcript_id AT1G09575.1 protein_id AT1G09575.1p transcript_id AT1G09575.1
AT1G09575	chr1:003101851	0.0	C/3101851-3102348,3102452-3102832	AT1G09575.2 AT1G09575.2 CDS calcium uniporter-like protein (DUF607)
At1g09580	chr1:003104657	0.0	W/3104657-3104875,3105485-3105697,3105797-3105873,3105948-3106092	AT1G09580.1 CDS emp24/gp25L/p24 family/GOLD family protein [TAIR10] CDS gene_syn F14J9.28, F14J9_28 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_component membrane|GO:0016020||ISS go_process intracellular protein transport|GO:0006886||ISS go_function protein transmembrane transporter activity|GO:0008320||ISS product emp24/gp25L/p24 family/GOLD family protein note emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G57620.1); Has 1762 Blast hits to 1760 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 806; Fungi - 509; Plants - 239; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink). protein_id AT1G09580.1p transcript_id AT1G09580.1 protein_id AT1G09580.1p transcript_id AT1G09580.1
At1g09590	chr1:003106549	0.0	W/3106549-3106785,3107349-3107606	AT1G09590.1 CDS Translation protein SH3-like family protein [TAIR10] CDS gene_syn F14J9.25 go_component nucleolus|GO:0005730|15496452|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Translation protein SH3-like family protein note Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus, chloroplast; EXPRESSED IN: guard cell, juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G09690.1); Has 1439 Blast hits to 1439 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 709; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). protein_id AT1G09590.1p transcript_id AT1G09590.1 protein_id AT1G09590.1p transcript_id AT1G09590.1
At1g09600	chr1:003108617	0.0	W/3108617-3109120,3109210-3109494,3109571-3110116,3110231-3110331,3110428-3110533,3110625-3111035,3111127-3111318	AT1G09600.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F14J9.26, F14J9_26 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G57700.1); Has 123498 Blast hits to 122030 proteins in 4353 species: Archae - 93; Bacteria - 13546; Metazoa - 45885; Fungi - 12568; Plants - 30937; Viruses - 467; Other Eukaryotes - 20002 (source: NCBI BLink). protein_id AT1G09600.1p transcript_id AT1G09600.1 protein_id AT1G09600.1p transcript_id AT1G09600.1
At1g09610	chr1:003111789	0.0	W/3111789-3112637	AT1G09610.1 CDS glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [TAIR10] CDS gene_syn F14J9.29, F14J9_29 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF579) note Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G09610.1p transcript_id AT1G09610.1 protein_id AT1G09610.1p transcript_id AT1G09610.1
At1g09620	chr1:003113077	0.0	C/3113077-3113101,3113205-3116455	AT1G09620.1 CDS ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligases [TAIR10] CDS gene_syn F21M12.1, F21M12_1 go_component chloroplast|GO:0009507|18431481|IDA go_process translation|GO:0006412||IEA go_process tRNA aminoacylation for protein translation|GO:0006418||IEA go_process leucyl-tRNA aminoacylation|GO:0006429||IEA go_function nucleotide binding|GO:0000166||IEA go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA go_function leucine-tRNA ligase activity|GO:0004823||IEA go_function ATP binding|GO:0005524||IEA go_process tRNA aminoacylation for protein translation|GO:0006418||ISS go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS go_function ATP binding|GO:0005524||ISS product ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases note ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (InterPro:IPR004493); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT4G04350.1); Has 16931 Blast hits to 15894 proteins in 2953 species: Archae - 757; Bacteria - 11010; Metazoa - 639; Fungi - 488; Plants - 264; Viruses - 0; Other Eukaryotes - 3773 (source: NCBI BLink). protein_id AT1G09620.1p transcript_id AT1G09620.1 protein_id AT1G09620.1p transcript_id AT1G09620.1
At1g09625	chr1:003117343	0.0	C/3117343-3117567	AT1G09625.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09625.1p transcript_id AT1G09625.1 protein_id AT1G09625.1p transcript_id AT1G09625.1
At1g09630	chr1:003118350	0.0	C/3118350-3118838,3119407-3119571	AT1G09630.1 CDS RAB GTPase 11C [TAIR10] CDS gene_syn ARABIDOPSIS RAB GTPASE A2A, ATRAB-A2A, ATRAB11C, ATRABA2A, F21M12.2, F21M12_2, RAB GTPASE A2A, RAB GTPase 11C, RAB-A2A, RAB11c, RAS-RELATED SMALL GTPASE gene RAB11c function Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function GTP binding|GO:0005525||IEA go_component endosome|GO:0005768|18239134|IDA go_component cell plate|GO:0009504|18239134|IDA go_process cytokinesis|GO:0000910|18239134|IMP go_function GTP binding|GO:0005525||ISS product RAB GTPase 11C note RAB GTPase 11C (RAB11c); FUNCTIONS IN: GTP binding; INVOLVED IN: cytokinesis; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2B (TAIR:AT1G07410.1); Has 27576 Blast hits to 27520 proteins in 758 species: Archae - 26; Bacteria - 154; Metazoa - 14618; Fungi - 3770; Plants - 3044; Viruses - 20; Other Eukaryotes - 5944 (source: NCBI BLink). protein_id AT1G09630.1p transcript_id AT1G09630.1 protein_id AT1G09630.1p transcript_id AT1G09630.1
At1g09640	chr1:003120162	0.0	W/3120162-3120170,3120388-3120537,3120626-3120686,3120787-3120839,3120959-3121060,3121171-3121398,3121958-3122152	AT1G09640.2 CDS Translation elongation factor EF1B, gamma chain [TAIR10] CDS gene_syn F21M12.3, F21M12_3 go_process translational elongation|GO:0006414||IEA go_function translation elongation factor activity|GO:0003746||IEA go_function translation elongation factor activity|GO:0003746||ISS product Translation elongation factor EF1B, gamma chain note Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G57720.2). protein_id AT1G09640.2p transcript_id AT1G09640.2 protein_id AT1G09640.2p transcript_id AT1G09640.2
At1g09640	chr1:003120162	0.0	W/3120162-3120170,3120388-3120537,3120626-3120686,3120787-3120839,3120959-3121060,3121171-3121660,3121773-3122152	AT1G09640.1 CDS Translation elongation factor EF1B, gamma chain [TAIR10] CDS gene_syn F21M12.3, F21M12_3 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function translation elongation factor activity|GO:0003746||IEA go_function translation elongation factor activity|GO:0003746||ISS product Translation elongation factor EF1B, gamma chain note Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G57720.2); Has 8999 Blast hits to 8983 proteins in 1311 species: Archae - 2; Bacteria - 4523; Metazoa - 1774; Fungi - 604; Plants - 732; Viruses - 0; Other Eukaryotes - 1364 (source: NCBI BLink). protein_id AT1G09640.1p transcript_id AT1G09640.1 protein_id AT1G09640.1p transcript_id AT1G09640.1
At1g09645	chr1:003123155	0.0	W/3123155-3123236,3124109-3124347	AT1G09645.1 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09645.1p transcript_id AT1G09645.1 protein_id AT1G09645.1p transcript_id AT1G09645.1
At1g09650	chr1:003125978	0.0	W/3125978-3127126	AT1G09650.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS gene_syn F21M12.4, F21M12_4 go_component cellular_component|GO:0005575||ND go_process response to chitin|GO:0010200|17722694|IEP go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G12490.1); Has 1173 Blast hits to 1151 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 1160; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G09650.1p transcript_id AT1G09650.1 protein_id AT1G09650.1p transcript_id AT1G09650.1
At1g09660	chr1:003128032	0.0	C/3128032-3128187,3128259-3128402,3128851-3128967,3129044-3129181,3129304-3129428,3130100-3130185,3130661-3130791	AT1G09660.1 CDS RNA-binding KH domain-containing protein [TAIR10] CDS gene_syn F21M12.5, F21M12_5 go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product RNA-binding KH domain-containing protein note RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26480.1); Has 1343 Blast hits to 1342 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 810; Fungi - 168; Plants - 277; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). protein_id AT1G09660.1p transcript_id AT1G09660.1 protein_id AT1G09660.1p transcript_id AT1G09660.1
AT1G09660	chr1:003128032	0.0	C/3128032-3128187,3128259-3128402,3128851-3128967,3129044-3129181,3129304-3129428,3130100-3130185,3130661-3130791	AT1G09660.3 AT1G09660.3 CDS RNA-binding KH domain-containing protein
At1g09660	chr1:003128205	0.0	C/3128205-3128402,3128851-3128967,3129044-3129181,3129304-3129428,3130100-3130185,3130661-3130791	AT1G09660.2 CDS RNA-binding KH domain-containing protein [TAIR10] CDS gene_syn F21M12.5, F21M12_5 go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product RNA-binding KH domain-containing protein note RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09660.2p transcript_id AT1G09660.2 protein_id AT1G09660.2p transcript_id AT1G09660.2
At1g09665	chr1:003133095	0.0	W/3133095-3133555,3133638-3133674	AT1G09665.1 CDS Toll-Interleukin-Resistance (TIR) domain family protein [TAIR10] CDS go_component intrinsic to membrane|GO:0031224||IEA go_process signal transduction|GO:0007165||IEA go_process innate immune response|GO:0045087||IEA go_function transmembrane receptor activity|GO:0004888||IEA go_process defense response|GO:0006952||ISS go_process defense response signaling pathway, resistance gene-dependent|GO:0009870||ISS product Toll-Interleukin-Resistance (TIR) domain family protein note Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain family protein (TAIR:AT2G03300.1); Has 1586 Blast hits to 1524 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1586; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09665.1p transcript_id AT1G09665.1 protein_id AT1G09665.1p transcript_id AT1G09665.1
At1g09680	chr1:003134107	0.0	C/3134107-3135930	AT1G09680.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F21M12.7, F21M12_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 56278 Blast hits to 14858 proteins in 304 species: Archae - 3; Bacteria - 59; Metazoa - 821; Fungi - 925; Plants - 52616; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink). protein_id AT1G09680.1p transcript_id AT1G09680.1 protein_id AT1G09680.1p transcript_id AT1G09680.1
At1g09690	chr1:003136407	0.0	C/3136407-3136664,3137194-3137430	AT1G09690.1 CDS Translation protein SH3-like family protein [TAIR10] CDS gene_syn F21M12.8, F21M12_8 go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Translation protein SH3-like family protein note Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: juvenile leaf, pollen tube; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G09590.1); Has 1439 Blast hits to 1439 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 709; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). protein_id AT1G09690.1p transcript_id AT1G09690.1 protein_id AT1G09690.1p transcript_id AT1G09690.1
AT1G09700	chr1:003137960	0.0	C/3137960-3138001,3138422-3138931,3139335-3139597,3140094-3140118	AT1G09700.2 AT1G09700.2 CDS dsRNA-binding domain-like superfamily protein
At1g09700	chr1:003137960	0.0	C/3137960-3138931,3139335-3139597,3140094-3140118	AT1G09700.1 CDS dsRNA-binding domain-like superfamily protein [TAIR10] CDS gene_syn DRB1, DSRNA-BINDING PROTEIN 1, F21M12.9, F21M12_9, HYL1, HYPONASTIC LEAVES 1 gene HYL1 function Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin. go_component nucleus|GO:0005634|11148283|IDA go_component nucleus|GO:0005634|17369351|IDA go_component nuclear dicing body|GO:0010445|17442570|IDA go_process response to auxin stimulus|GO:0009733|11148283|IMP go_process response to cytokinin stimulus|GO:0009735|11148283|IMP go_process response to abscisic acid stimulus|GO:0009737|11148283|IMP go_process production of ta-siRNAs involved in RNA interference|GO:0010267|16889646|IMP go_process production of miRNAs involved in gene silencing by miRNA|GO:0035196|14972688|IMP go_process mRNA cleavage involved in gene silencing by miRNA|GO:0035279|15851028|IMP go_function double-stranded RNA binding|GO:0003725|11148283|IDA go_function double-stranded RNA binding|GO:0003725|15821876|IDA go_function protein binding|GO:0005515|15821876|IPI go_function miRNA binding|GO:0035198|17369351|IDA product dsRNA-binding domain-like superfamily protein note HYPONASTIC LEAVES 1 (HYL1); CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2 (TAIR:AT2G28380.1); Has 992 Blast hits to 893 proteins in 320 species: Archae - 14; Bacteria - 506; Metazoa - 117; Fungi - 6; Plants - 270; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). protein_id AT1G09700.1p transcript_id AT1G09700.1 protein_id AT1G09700.1p transcript_id AT1G09700.1
At1g09710	chr1:003141119	0.0	W/3141119-3141198,3141294-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.1 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn F21M12.10, F21M12_10 go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1); Has 2083 Blast hits to 515 proteins in 153 species: Archae - 0; Bacteria - 81; Metazoa - 329; Fungi - 153; Plants - 69; Viruses - 0; Other Eukaryotes - 1451 (source: NCBI BLink). protein_id AT1G09710.1p transcript_id AT1G09710.1 protein_id AT1G09710.1p transcript_id AT1G09710.1
AT1G09710	chr1:003141119	0.0	W/3141119-3141198,3141294-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.4 AT1G09710.4 CDS Homeodomain-like superfamily protein
At1g09710	chr1:003141119	0.0	W/3141119-3141198,3141294-3141483,3141745-3141831,3142030-3142398,3142930-3143194,3143271-3144232	AT1G09710.2 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn F21M12.10, F21M12_10 go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1). protein_id AT1G09710.2p transcript_id AT1G09710.2 protein_id AT1G09710.2p transcript_id AT1G09710.2
AT1G09710	chr1:003141301	0.0	W/3141301-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.3 AT1G09710.3 CDS Homeodomain-like superfamily protein
AT1G09710	chr1:003141301	0.0	W/3141301-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.5 AT1G09710.5 CDS Homeodomain-like superfamily protein
At1g09720	chr1:003144438	0.0	C/3144438-3147130,3147210-3147303	AT1G09720.1 CDS Kinase interacting (KIP1-like) family protein [TAIR10] CDS gene_syn F21M12.11, F21M12_11 go_process biological_process|GO:0008150||ND product Kinase interacting (KIP1-like) family protein note Kinase interacting (KIP1-like) family protein; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 36531 Blast hits to 24166 proteins in 1497 species: Archae - 615; Bacteria - 4202; Metazoa - 18004; Fungi - 3193; Plants - 2001; Viruses - 107; Other Eukaryotes - 8409 (source: NCBI BLink). protein_id AT1G09720.1p transcript_id AT1G09720.1 protein_id AT1G09720.1p transcript_id AT1G09720.1
At1g09730	chr1:003148017	0.0	C/3148017-3148568,3148658-3149080,3149385-3149504,3150119-3150209,3150464-3150557,3150637-3150692,3150772-3150972,3151160-3151291,3151452-3151508,3151913-3152021,3152521-3152578,3152674-3152871,3153010-3153047,3153144-3153237,3153321-3153754,3154098-3154236	AT1G09730.2 CDS Cysteine proteinases superfamily protein [TAIR10] CDS gene_syn F21M12.29, F21M12_29 go_process proteolysis|GO:0006508||IEA go_function cysteine-type peptidase activity|GO:0008234||IEA go_component cellular_component|GO:0005575||ND go_process proteolysis|GO:0006508||ISS go_function cysteine-type peptidase activity|GO:0008234||ISS product Cysteine proteinases superfamily protein note Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G33620.1). protein_id AT1G09730.2p transcript_id AT1G09730.2 protein_id AT1G09730.2p transcript_id AT1G09730.2
At1g09730	chr1:003148017	0.0	C/3148017-3148568,3148658-3149080,3149385-3149504,3150119-3150209,3150464-3150557,3150637-3150692,3150772-3150972,3151160-3151291,3151452-3151508,3151913-3152021,3152521-3152578,3152674-3152871,3153010-3153237,3153321-3153754,3154098-3154236	AT1G09730.1 CDS Cysteine proteinases superfamily protein [TAIR10] CDS gene_syn F21M12.29, F21M12_29 go_process proteolysis|GO:0006508||IEA go_function cysteine-type peptidase activity|GO:0008234||IEA go_component cellular_component|GO:0005575||ND go_process proteolysis|GO:0006508||ISS go_function cysteine-type peptidase activity|GO:0008234||ISS product Cysteine proteinases superfamily protein note Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G33620.1); Has 1713 Blast hits to 1567 proteins in 224 species: Archae - 4; Bacteria - 15; Metazoa - 815; Fungi - 324; Plants - 268; Viruses - 7; Other Eukaryotes - 280 (source: NCBI BLink). protein_id AT1G09730.1p transcript_id AT1G09730.1 protein_id AT1G09730.1p transcript_id AT1G09730.1
At1g09740	chr1:003154603	0.0	W/3154603-3154804,3154896-3154999,3155217-3155335,3155744-3155834	AT1G09740.1 CDS Adenine nucleotide alpha hydrolases-like superfamily protein [TAIR10] CDS gene_syn F21M12.12, F21M12_12 go_process response to stress|GO:0006950||IEA go_component cellular_component|GO:0005575||ND go_process response to stress|GO:0006950||ISS go_function molecular_function|GO:0003674||ND product Adenine nucleotide alpha hydrolases-like superfamily protein note Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 5950 Blast hits to 5719 proteins in 1218 species: Archae - 487; Bacteria - 4382; Metazoa - 139; Fungi - 81; Plants - 701; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). protein_id AT1G09740.1p transcript_id AT1G09740.1 protein_id AT1G09740.1p transcript_id AT1G09740.1
AT1G09740	chr1:003154603	0.0	W/3154603-3154804,3154896-3154999,3155217-3155335,3155744-3155834	AT1G09740.2 AT1G09740.2 CDS Adenine nucleotide alpha hydrolases-like superfamily protein
At1g09750	chr1:003157541	0.0	W/3157541-3158593,3158664-3158960	AT1G09750.1 CDS Eukaryotic aspartyl protease family protein [TAIR10] CDS gene_syn F21M12.13, F21M12_13 go_component cell wall|GO:0005618|15593128|IDA go_component plant-type cell wall|GO:0009505|17526915|IDA go_component apoplast|GO:0048046|18538804|IDA go_process proteolysis|GO:0006508||IEA go_function aspartic-type endopeptidase activity|GO:0004190||IEA product Eukaryotic aspartyl protease family protein note Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G54400.1); Has 2762 Blast hits to 2753 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 415; Fungi - 350; Plants - 1861; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink). protein_id AT1G09750.1p transcript_id AT1G09750.1 protein_id AT1G09750.1p transcript_id AT1G09750.1
At1g09760	chr1:003159476	0.0	C/3159476-3159481,3159578-3159652,3159752-3159802,3159923-3160081,3160582-3160787,3160888-3161017,3161381-3161421,3161522-3161603	AT1G09760.1 CDS U2 small nuclear ribonucleoprotein A [TAIR10] CDS gene_syn F21M12.14, F21M12_14, U2 small nuclear ribonucleoprotein A, U2A' gene U2A' go_component nucleus|GO:0005634|14617066|IDA go_component nucleolus|GO:0005730|15496452|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component nucleoplasm|GO:0005654|15133128|IDA go_component cytoplasm|GO:0005737|15133128|IDA go_component Cajal body|GO:0015030|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|15133128|IDA go_process response to cold|GO:0009409|14617066|IEP product U2 small nuclear ribonucleoprotein A note U2 small nuclear ribonucleoprotein A (U2A'); INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0; Bacteria - 3635; Metazoa - 3194; Fungi - 303; Plants - 219; Viruses - 2; Other Eukaryotes - 756 (source: NCBI BLink). protein_id AT1G09760.1p transcript_id AT1G09760.1 protein_id AT1G09760.1p transcript_id AT1G09760.1
At1g09770	chr1:003162002	0.0	W/3162002-3162178,3162444-3164162,3164395-3164676,3164766-3165122	AT1G09770.1 CDS cell division cycle 5 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ATCDC5, ATMYBCDC5, CDC5, F21M12.15, F21M12_15, cell division cycle 5 gene CDC5 function Member of MYB3R- and R2R3- type MYB- encoding genes. Essential for plant innate immunity. Interacts with MOS4 and PRL1. go_component chloroplast|GO:0009507|15028209|IDA go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17575050|IMP go_process defense response signaling pathway, resistance gene-independent|GO:0010204|17575050|IMP go_process defense response to bacterium|GO:0042742|17575050|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process defense response to fungus|GO:0050832|17575050|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product cell division cycle 5 note cell division cycle 5 (CDC5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response signaling pathway, resistance gene-dependent, defense response to bacterium, defense response to fungus, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3351 (InterPro:IPR021786), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-4 (TAIR:AT5G11510.1); Has 13137 Blast hits to 10813 proteins in 768 species: Archae - 14; Bacteria - 356; Metazoa - 3570; Fungi - 914; Plants - 4936; Viruses - 8; Other Eukaryotes - 3339 (source: NCBI BLink). protein_id AT1G09770.1p transcript_id AT1G09770.1 protein_id AT1G09770.1p transcript_id AT1G09770.1
At1g09780	chr1:003165550	0.0	C/3165550-3165711,3165798-3165953,3166039-3166134,3166224-3166416,3166583-3167211,3167303-3167581,3167654-3167812	AT1G09780.1 CDS Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [TAIR10] CDS gene_syn F21M12.16, F21M12_16 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function catalytic activity|GO:0003824||IEA go_function phosphoglycerate mutase activity|GO:0004619||IEA go_function manganese ion binding|GO:0030145||IEA go_function metal ion binding|GO:0046872||IEA go_component mitochondrial envelope|GO:0005740|12953116|IDA go_component cytosol|GO:0005829|18433157|IDA go_process response to cold|GO:0009409|16574749|IEP go_function 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity|GO:0046537||ISS product Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent note Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; FUNCTIONS IN: manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: mitochondrial envelope, cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Metalloenzyme (InterPro:IPR006124), BPG-independent PGAM, N-terminal (InterPro:IPR011258), Alkaline-phosphatase-like, core domain (InterPro:IPR017850), Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (InterPro:IPR005995); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (TAIR:AT3G08590.2); Has 4822 Blast hits to 4813 proteins in 1698 species: Archae - 54; Bacteria - 3035; Metazoa - 34; Fungi - 85; Plants - 379; Viruses - 0; Other Eukaryotes - 1235 (source: NCBI BLink). protein_id AT1G09780.1p transcript_id AT1G09780.1 protein_id AT1G09780.1p transcript_id AT1G09780.1
AT1G09790	chr1:003168568	0.0	C/3168568-3168869,3168954-3169234,3169327-3169471,3169589-3170045,3170575-3170654,3170753-3170819	AT1G09790.2 AT1G09790.2 CDS COBRA-like protein 6 precursor
At1g09790	chr1:003168568	0.0	C/3168568-3168869,3168954-3169234,3169327-3169471,3169589-3170045,3170575-3170687,3170753-3170819	AT1G09790.1 CDS COBRA-like protein 6 precursor [TAIR10] CDS gene_syn COBL6, COBRA-like protein 6 precursor, F21M12.17, F21M12_17 gene COBL6 go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12376623|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product COBRA-like protein 6 precursor note COBRA-like protein 6 precursor (COBL6); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 376 Blast hits to 369 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 376; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09790.1p transcript_id AT1G09790.1 protein_id AT1G09790.1p transcript_id AT1G09790.1
At1g09794	chr1:003172196	0.0	W/3172196-3172281,3173216-3173321	AT1G09794.1 CDS Cox19 family protein (CHCH motif) [TAIR10] CDS product Cox19 family protein (CHCH motif) note Cox19 family protein (CHCH motif); CONTAINS InterPro DOMAIN/s: MTCP1 (InterPro:IPR009069). protein_id AT1G09794.1p transcript_id AT1G09794.1 protein_id AT1G09794.1p transcript_id AT1G09794.1
At1g09795	chr1:003173588	0.0	W/3173588-3173884,3174454-3174513,3174620-3174733,3174997-3175062,3175141-3175248,3175351-3175434,3175753-3175854,3175942-3176055,3176130-3176210,3176305-3176424,3176595-3176690	AT1G09795.1 CDS ATP phosphoribosyl transferase 2 [TAIR10] CDS gene_syn ATATP-PRT2, ATP PHOSPHORIBOSYL TRANSFERASE 2, ATP phosphoribosyl transferase 2, ATP-PRT2, HISN1B gene ATP-PRT2 function ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis go_component chloroplast|GO:0009507|18431481|IDA go_process histidine biosynthetic process|GO:0000105|10712555|IDA go_process histidine biosynthetic process|GO:0000105||ISS go_function ATP phosphoribosyltransferase activity|GO:0003879|10712555|IDA go_function ATP phosphoribosyltransferase activity|GO:0003879||ISS product ATP phosphoribosyl transferase 2 note ATP phosphoribosyl transferase 2 (ATP-PRT2); FUNCTIONS IN: ATP phosphoribosyltransferase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine biosynthesis HisG: ATP phosphoribosyltransferase (InterPro:IPR001348), ATP phosphoribosyltransferase, conserved site (InterPro:IPR018198), ATP phosphoribosyltransferase, catalytic domain (InterPro:IPR013820), Histidine biosynthesis HisG, C-terminal (InterPro:IPR013115), Nitrogen regulatory PII-like, alpha/beta (InterPro:IPR011322); BEST Arabidopsis thaliana protein match is: ATP phosphoribosyl transferase 1 (TAIR:AT1G58080.1); Has 6354 Blast hits to 6354 proteins in 2167 species: Archae - 206; Bacteria - 4075; Metazoa - 2; Fungi - 141; Plants - 71; Viruses - 0; Other Eukaryotes - 1859 (source: NCBI BLink). protein_id AT1G09795.1p transcript_id AT1G09795.1 protein_id AT1G09795.1p transcript_id AT1G09795.1
At1g09800	chr1:003177121	0.0	C/3177121-3177218,3177321-3177381,3177598-3177867,3178390-3178452,3178589-3178688,3178830-3178912,3179152-3179205,3179473-3179550,3179845-3179901,3180082-3180336	AT1G09800.1 CDS Pseudouridine synthase family protein [TAIR10] CDS gene_syn F21M12.18, F21M12_18 go_process pseudouridine synthesis|GO:0001522||IEA go_process RNA modification|GO:0009451||IEA go_component cellular_component|GO:0005575||ND go_function pseudouridine synthase activity|GO:0009982|18599582|TAS product Pseudouridine synthase family protein note Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 10187 Blast hits to 8452 proteins in 2593 species: Archae - 98; Bacteria - 6891; Metazoa - 134; Fungi - 4; Plants - 112; Viruses - 0; Other Eukaryotes - 2948 (source: NCBI BLink). protein_id AT1G09800.1p transcript_id AT1G09800.1 protein_id AT1G09800.1p transcript_id AT1G09800.1
AT1G09800	chr1:003177121	0.0	C/3177121-3177218,3177321-3177381,3177598-3177867,3178390-3178452,3178589-3178688,3178830-3178912,3179152-3179205,3179473-3179550,3179845-3179908,3180089-3180336	AT1G09800.2 AT1G09800.2 CDS Pseudouridine synthase family protein
At1g09810	chr1:003181138	0.0	C/3181138-3181299,3181402-3181788,3181880-3182353,3182478-3182663,3182753-3182817,3182999-3183047,3183129-3183190,3183327-3183354	AT1G09810.1 CDS evolutionarily conserved C-terminal region 11 [TAIR10] CDS gene_syn ECT11, F21M12.20, F21M12_20, evolutionarily conserved C-terminal region 11 gene ECT11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product evolutionarily conserved C-terminal region 11 note evolutionarily conserved C-terminal region 11 (ECT11); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 8 (TAIR:AT1G79270.1); Has 926 Blast hits to 916 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 98; Plants - 333; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). protein_id AT1G09810.1p transcript_id AT1G09810.1 protein_id AT1G09810.1p transcript_id AT1G09810.1
AT1G09810	chr1:003181138	0.0	C/3181138-3181299,3181402-3181788,3181880-3182353,3182478-3182663,3182753-3182817,3182999-3183080	AT1G09810.3 AT1G09810.3 CDS evolutionarily conserved C-terminal region 11
AT1G09810	chr1:003181138	0.0	C/3181138-3181299,3181402-3181788,3181880-3182353,3182478-3182663,3182753-3182830	AT1G09810.2 AT1G09810.2 CDS evolutionarily conserved C-terminal region 11
At1g09812	chr1:003187817	0.0	W/3187817-3188077,3188455-3188580	AT1G09812.1 CDS multidrug resistance protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58007.2); Has 93 Blast hits to 93 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09812.1p transcript_id AT1G09812.1 protein_id AT1G09812.1p transcript_id AT1G09812.1
At1g09815	chr1:003189460	0.0	W/3189460-3189640,3189857-3190050	AT1G09815.1 CDS polymerase delta 4 [TAIR10] CDS gene_syn POLD4, polymerase delta 4 gene POLD4 go_component nucleus|GO:0005634||IEA go_process DNA replication|GO:0006260||IEA go_process DNA replication|GO:0006260||ISS go_function DNA-directed DNA polymerase activity|GO:0003887||ISS product polymerase delta 4 note polymerase delta 4 (POLD4); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase delta, subunit 4 (InterPro:IPR007218); Has 212 Blast hits to 212 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 86; Plants - 65; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G09815.1p transcript_id AT1G09815.1 protein_id AT1G09815.1p transcript_id AT1G09815.1
At1g09820	chr1:003190594	0.0	C/3190594-3192414	AT1G09820.1 CDS Pentatricopeptide repeat (PPR-like) superfamily protein [TAIR10] CDS gene_syn F21M12.21, F21M12_21 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR-like) superfamily protein note Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 57260 Blast hits to 15041 proteins in 306 species: Archae - 1; Bacteria - 71; Metazoa - 917; Fungi - 972; Plants - 53378; Viruses - 0; Other Eukaryotes - 1921 (source: NCBI BLink). protein_id AT1G09820.1p transcript_id AT1G09820.1 protein_id AT1G09820.1p transcript_id AT1G09820.1
At1g09830	chr1:003192783	0.0	C/3192783-3193202,3193291-3193821,3194177-3194550,3194663-3194936	AT1G09830.1 CDS Glycinamide ribonucleotide (GAR) synthetase [TAIR10] CDS gene_syn F21M12.22, F21M12_22 function glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process purine nucleotide biosynthetic process|GO:0006164|7920700|IGI go_process purine base biosynthetic process|GO:0009113||ISS go_function phosphoribosylamine-glycine ligase activity|GO:0004637|7920700|IGI go_function phosphoribosylamine-glycine ligase activity|GO:0004637||ISS product Glycinamide ribonucleotide (GAR) synthetase note Glycinamide ribonucleotide (GAR) synthetase; FUNCTIONS IN: phosphoribosylamine-glycine ligase activity; INVOLVED IN: purine base biosynthetic process, purine nucleotide biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide synthetase, conserved site (InterPro:IPR020559), Phosphoribosylglycinamide synthetase, C-domain (InterPro:IPR020560), Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain (InterPro:IPR020561), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), PreATP-grasp-like fold (InterPro:IPR016185), Phosphoribosylglycinamide synthetase, N-domain (InterPro:IPR020562), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054), Phosphoribosylglycinamide synthetase (InterPro:IPR000115); Has 12648 Blast hits to 12644 proteins in 2666 species: Archae - 340; Bacteria - 7373; Metazoa - 216; Fungi - 226; Plants - 88; Viruses - 0; Other Eukaryotes - 4405 (source: NCBI BLink). protein_id AT1G09830.1p transcript_id AT1G09830.1 protein_id AT1G09830.1p transcript_id AT1G09830.1
AT1G09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198844	AT1G09840.11 AT1G09840.11 CDS shaggy-like protein kinase 41
AT1G09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.10 AT1G09840.10 CDS shaggy-like protein kinase 41
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.1 CDS shaggy-like protein kinase 41 [TAIR10] CDS gene_syn ATSK41, F21M12.23, F21M12_23, SK41, shaggy-like protein kinase 41 gene SK41 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function protein kinase activity|GO:0004672||ISS product shaggy-like protein kinase 41 note shaggy-like protein kinase 41 (SK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2); Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93; Bacteria - 10743; Metazoa - 37496; Fungi - 11700; Plants - 24573; Viruses - 362; Other Eukaryotes - 17964 (source: NCBI BLink). protein_id AT1G09840.1p transcript_id AT1G09840.1 protein_id AT1G09840.1p transcript_id AT1G09840.1
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.2 CDS shaggy-like protein kinase 41 [TAIR10] CDS gene_syn ATSK41, F21M12.23, F21M12_23, SK41, shaggy-like protein kinase 41 gene SK41 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function protein kinase activity|GO:0004672||ISS product shaggy-like protein kinase 41 note shaggy-like protein kinase 41 (SK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2); Has 103041 Blast hits to 102006 proteins in 3707 species: Archae - 93; Bacteria - 10783; Metazoa - 37541; Fungi - 11720; Plants - 24577; Viruses - 363; Other Eukaryotes - 17964 (source: NCBI BLink). protein_id AT1G09840.2p transcript_id AT1G09840.2 protein_id AT1G09840.2p transcript_id AT1G09840.2
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.3 CDS shaggy-like protein kinase 41 [TAIR10] CDS gene_syn ATSK41, F21M12.23, F21M12_23, SK41, shaggy-like protein kinase 41 gene SK41 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function protein kinase activity|GO:0004672||ISS product shaggy-like protein kinase 41 note shaggy-like protein kinase 41 (SK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09840.3p transcript_id AT1G09840.3 protein_id AT1G09840.3p transcript_id AT1G09840.3
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.4 CDS shaggy-like protein kinase 41 [TAIR10] CDS gene_syn ATSK41, F21M12.23, F21M12_23, SK41, shaggy-like protein kinase 41 gene SK41 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function protein kinase activity|GO:0004672||ISS product shaggy-like protein kinase 41 note shaggy-like protein kinase 41 (SK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09840.4p transcript_id AT1G09840.4 protein_id AT1G09840.4p transcript_id AT1G09840.4
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.5 CDS shaggy-like protein kinase 41 [TAIR10] CDS gene_syn ATSK41, F21M12.23, F21M12_23, SK41, shaggy-like protein kinase 41 gene SK41 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function protein kinase activity|GO:0004672||ISS product shaggy-like protein kinase 41 note shaggy-like protein kinase 41 (SK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2); Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93; Bacteria - 10743; Metazoa - 37496; Fungi - 11700; Plants - 24573; Viruses - 362; Other Eukaryotes - 17964 (source: NCBI BLink). protein_id AT1G09840.5p transcript_id AT1G09840.5 protein_id AT1G09840.5p transcript_id AT1G09840.5
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.6 CDS shaggy-like protein kinase 41 [TAIR10] CDS gene_syn ATSK41, F21M12.23, F21M12_23, SK41, shaggy-like protein kinase 41 gene SK41 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function protein kinase activity|GO:0004672||ISS product shaggy-like protein kinase 41 note shaggy-like protein kinase 41 (SK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2); Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93; Bacteria - 10743; Metazoa - 37496; Fungi - 11700; Plants - 24573; Viruses - 362; Other Eukaryotes - 17964 (source: NCBI BLink). protein_id AT1G09840.6p transcript_id AT1G09840.6 protein_id AT1G09840.6p transcript_id AT1G09840.6
AT1G09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.7 AT1G09840.7 CDS shaggy-like protein kinase 41
AT1G09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.8 AT1G09840.8 CDS shaggy-like protein kinase 41
AT1G09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.9 AT1G09840.9 CDS shaggy-like protein kinase 41
At1g09850	chr1:003201848	0.0	W/3201848-3202265,3202709-3202944,3203045-3203185,3203271-3203702,3203789-3203875	AT1G09850.1 CDS xylem bark cysteine peptidase 3 [TAIR10] CDS gene_syn F21M12.24, F21M12_24, XBCP3, xylem bark cysteine peptidase 3 gene XBCP3 function Arabidopsis thaliana papain-like cysteine peptidase go_component vacuole|GO:0005773|15539469|IDA go_process proteolysis|GO:0006508||IEA go_function cysteine-type endopeptidase activity|GO:0004197||IEA go_function cysteine-type peptidase activity|GO:0008234||IEA go_function cysteine-type peptidase activity|GO:0008234||ISS product xylem bark cysteine peptidase 3 note xylem bark cysteine peptidase 3 (XBCP3); FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 8836 Blast hits to 8016 proteins in 749 species: Archae - 59; Bacteria - 272; Metazoa - 4224; Fungi - 4; Plants - 1933; Viruses - 132; Other Eukaryotes - 2212 (source: NCBI BLink). protein_id AT1G09850.1p transcript_id AT1G09850.1 protein_id AT1G09850.1p transcript_id AT1G09850.1
AT1G09850	chr1:003201848	0.0	W/3201848-3202265,3202709-3202944,3203045-3203185,3203271-3203702,3203789-3203875	AT1G09850.2 AT1G09850.2 CDS xylem bark cysteine peptidase 3
At1g09860	chr1:003204136	0.0	C/3204136-3205287	AT1G09860.1 CDS purine permease 16 [TAIR10] CDS gene_syn ATPUP16, F21M12.25, F21M12_25, PUP16, purine permease 16 gene PUP16 function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. go_component membrane|GO:0016020|10662864|TAS go_process purine transport|GO:0006863|10662864|TAS go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS go_function purine transmembrane transporter activity|GO:0005345||ISS product purine permease 16 note purine permease 16 (PUP16); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 17 (TAIR:AT1G57943.1); Has 330 Blast hits to 323 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 326; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09860.1p transcript_id AT1G09860.1 protein_id AT1G09860.1p transcript_id AT1G09860.1
At1g09870	chr1:003205817	0.0	W/3205817-3205917,3206111-3206198,3206278-3206571,3206686-3206844,3206964-3207104,3207220-3207276,3207377-3207515,3207609-3207713,3207820-3208010,3208168-3208209,3208298-3208444	AT1G09870.1 CDS histidine acid phosphatase family protein [TAIR10] CDS gene_syn F21M12.26, F21M12_26 go_component plasma membrane|GO:0005886|17151019|IDA go_function acid phosphatase activity|GO:0003993||IEA go_process biological_process|GO:0008150||ND go_function acid phosphatase activity|GO:0003993||ISS product histidine acid phosphatase family protein note histidine acid phosphatase family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Histidine acid phosphatase, eukaryotic (InterPro:IPR016274); Has 765 Blast hits to 755 proteins in 231 species: Archae - 0; Bacteria - 126; Metazoa - 192; Fungi - 356; Plants - 52; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). protein_id AT1G09870.1p transcript_id AT1G09870.1 protein_id AT1G09870.1p transcript_id AT1G09870.1
At1g09880	chr1:003208828	0.0	C/3208828-3209085,3209168-3209300,3209377-3209650,3209731-3209872,3209964-3210054,3210143-3210249,3210331-3210486,3210569-3210739,3210848-3211109,3211184-3211300,3211385-3211450,3211535-3211653	AT1G09880.1 CDS Rhamnogalacturonate lyase family protein [TAIR10] CDS gene_syn F21M12.27, F21M12_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function lyase activity|GO:0016829||ISS product Rhamnogalacturonate lyase family protein note Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 288 Blast hits to 274 proteins in 61 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 85; Plants - 160; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G09880.1p transcript_id AT1G09880.1 protein_id AT1G09880.1p transcript_id AT1G09880.1
AT1G09880	chr1:003208828	0.0	C/3208828-3209085,3209168-3209300,3209377-3209650,3209731-3209872,3209964-3210054,3210143-3210249,3210331-3210486,3210569-3210739,3210848-3211109,3211184-3211300,3211385-3211450,3211535-3211659,3211834-3211929	AT1G09880.4 AT1G09880.4 CDS Rhamnogalacturonate lyase family protein
AT1G09880	chr1:003208828	0.0	C/3208828-3209085,3209168-3209300,3209377-3209650,3209731-3209872,3209964-3210054,3210143-3210249,3210331-3210486,3210569-3210739,3210848-3211109,3211184-3211300,3211385-3211450,3211535-3211659,3211834-3211979,3212118-3212163	AT1G09880.2 AT1G09880.2 CDS Rhamnogalacturonate lyase family protein
AT1G09880	chr1:003208828	0.0	C/3208828-3209085,3209168-3209300,3209377-3209650,3209731-3209872,3209964-3210054,3210143-3210249,3210331-3210486,3210569-3210739,3210848-3211109,3211184-3211300,3211385-3211450,3211535-3211659,3211834-3211979,3212118-3212202,3213415-3213417	AT1G09880.3 AT1G09880.3 CDS Rhamnogalacturonate lyase family protein
AT1G09890	chr1:003214237	0.0	C/3214237-3214467,3214582-3214708,3214796-3214912,3215098-3215254,3215327-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216786,3216871-3216990,3217134-3217184,3217271-3217392,3217500-3217541	AT1G09890.5 AT1G09890.5 CDS Rhamnogalacturonate lyase family protein
At1g09890	chr1:003214237	0.0	C/3214237-3214467,3214582-3214708,3214796-3214912,3215098-3215254,3215327-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216801,3216871-3216990,3217134-3217184,3217271-3217386	AT1G09890.1 CDS Rhamnogalacturonate lyase family protein [TAIR10] CDS gene_syn F21M12.28, F21M12_28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function lyase activity|GO:0016829||ISS product Rhamnogalacturonate lyase family protein note Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09910.1); Has 301 Blast hits to 285 proteins in 64 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 84; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09890.1p transcript_id AT1G09890.1 protein_id AT1G09890.1p transcript_id AT1G09890.1
AT1G09890	chr1:003214237	0.0	C/3214237-3214467,3214582-3214708,3214796-3214912,3215098-3215254,3215327-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216801,3216871-3216990,3217134-3217184,3217271-3217392,3217500-3217541	AT1G09890.4 AT1G09890.4 CDS Rhamnogalacturonate lyase family protein
AT1G09890	chr1:003214237	0.0	C/3214237-3214467,3214582-3214708,3214796-3214912,3215098-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216801,3216871-3216990,3217134-3217184,3217271-3217392,3217500-3217541	AT1G09890.3 AT1G09890.3 CDS Rhamnogalacturonate lyase family protein
AT1G09890	chr1:003214771	0.0	C/3214771-3214912,3215098-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216801,3216871-3216990,3217134-3217184,3217271-3217392,3217500-3217541	AT1G09890.2 AT1G09890.2 CDS Rhamnogalacturonate lyase family protein
At1g09900	chr1:003218133	0.0	W/3218133-3219929	AT1G09900.1 CDS Pentatricopeptide repeat (PPR-like) superfamily protein [TAIR10] CDS gene_syn F21M12.38, F21M12_38 go_component membrane|GO:0016020|17432890|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR-like) superfamily protein note Pentatricopeptide repeat (PPR-like) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT3G04760.1); Has 67710 Blast hits to 15322 proteins in 310 species: Archae - 4; Bacteria - 73; Metazoa - 1094; Fungi - 1217; Plants - 62670; Viruses - 0; Other Eukaryotes - 2652 (source: NCBI BLink). protein_id AT1G09900.1p transcript_id AT1G09900.1 protein_id AT1G09900.1p transcript_id AT1G09900.1
AT1G09910	chr1:003220151	0.0	C/3220151-3220387,3220466-3220706,3220790-3220946,3221017-3221158,3221328-3221418,3221533-3221639,3221731-3221886,3221966-3222136,3222345-3222486,3222714-3222833,3222912-3223031,3223353-3223403,3223528-3223649,3223734-3223775	AT1G09910.2 AT1G09910.2 CDS Rhamnogalacturonate lyase family protein
AT1G09910	chr1:003220151	0.0	C/3220151-3220387,3220466-3220706,3220790-3220946,3221017-3221158,3221328-3221418,3221533-3221639,3221731-3221886,3221966-3222136,3222345-3222486,3222714-3222833,3222912-3223031,3223353-3223403,3223528-3223649,3223734-3223775	AT1G09910.3 AT1G09910.3 CDS Rhamnogalacturonate lyase family protein
At1g09910	chr1:003220151	0.0	C/3220151-3220387,3220466-3220706,3220790-3220946,3221017-3221158,3221328-3221418,3221533-3221639,3221731-3221886,3221966-3222136,3222345-3222486,3222714-3222833,3222912-3223031,3223353-3223403,3223528-3223649,3223734-3223831,3224379-3224451	AT1G09910.1 CDS Rhamnogalacturonate lyase family protein [TAIR10] CDS gene_syn F21M12.30, F21M12_30 go_process carbohydrate metabolic process|GO:0005975||IEA go_component cellular_component|GO:0005575||ND go_function lyase activity|GO:0016829||ISS product Rhamnogalacturonate lyase family protein note Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 300 Blast hits to 279 proteins in 59 species: Archae - 0; Bacteria - 45; Metazoa - 0; Fungi - 84; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09910.1p transcript_id AT1G09910.1 protein_id AT1G09910.1p transcript_id AT1G09910.1
At1g09920	chr1:003224863	0.0	C/3224863-3225013,3225116-3225225,3225304-3225441,3225994-3226129,3226817-3226860	AT1G09920.1 CDS TRAF-type zinc finger-related [TAIR10] CDS gene_syn F21M12.31, F21M12_31 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product TRAF-type zinc finger-related note TRAF-type zinc finger-related; BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G15420.1); Has 897 Blast hits to 860 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 106; Plants - 68; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink). protein_id AT1G09920.1p transcript_id AT1G09920.1 protein_id AT1G09920.1p transcript_id AT1G09920.1
At1g09930	chr1:003227490	0.0	C/3227490-3228290,3228373-3228625,3228704-3229267,3229365-3229462,3229555-3230043	AT1G09930.1 CDS oligopeptide transporter 2 [TAIR10] CDS gene_syn ATOPT2, F21M12.32, F21M12_32, OPT2, oligopeptide transporter 2 gene OPT2 function oligopeptide transporter go_component plasma membrane|GO:0005886|17317660|IDA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020|11788749|ISS go_process oligopeptide transport|GO:0006857||ISS go_function oligopeptide transporter activity|GO:0015198|11788749|ISS go_function oligopeptide transporter activity|GO:0015198||ISS product oligopeptide transporter 2 note oligopeptide transporter 2 (OPT2); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: sperm cell, flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 4 (TAIR:AT5G64410.1); Has 1309 Blast hits to 1283 proteins in 148 species: Archae - 0; Bacteria - 69; Metazoa - 0; Fungi - 834; Plants - 392; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G09930.1p transcript_id AT1G09930.1 protein_id AT1G09930.1p transcript_id AT1G09930.1
At1g09932	chr1:003230716	0.0	C/3230716-3230800,3230881-3230922,3231065-3231184,3231544-3231632,3231737-3231811,3232017-3232137,3232477-3232556,3232670-3232777,3232883-3232924	AT1G09932.2 CDS Phosphoglycerate mutase family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Phosphoglycerate mutase family protein note Phosphoglycerate mutase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT2G17280.2); Has 475 Blast hits to 475 proteins in 96 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 207; Plants - 157; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink). protein_id AT1G09932.2p transcript_id AT1G09932.2 protein_id AT1G09932.2p transcript_id AT1G09932.2
At1g09932	chr1:003230716	0.0	C/3230716-3230800,3230881-3230922,3231065-3231184,3231544-3231632,3231737-3231811,3232017-3232137,3232477-3232556,3232670-3232777,3232965-3233027	AT1G09932.1 CDS Phosphoglycerate mutase family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Phosphoglycerate mutase family protein note Phosphoglycerate mutase family protein; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT2G17280.2); Has 552 Blast hits to 552 proteins in 105 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 272; Plants - 167; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). protein_id AT1G09932.1p transcript_id AT1G09932.1 protein_id AT1G09932.1p transcript_id AT1G09932.1
AT1G09932	chr1:003230716	0.0	C/3230716-3230800,3230881-3230922,3231065-3231184,3231544-3231632,3232017-3232137,3232477-3232556,3232670-3232777,3232965-3233027	AT1G09932.4 AT1G09932.4 CDS Phosphoglycerate mutase family protein
AT1G09932	chr1:003230877	0.0	C/3230877-3230922,3231065-3231184,3231544-3231632,3231737-3231811,3232017-3232137,3232477-3232556,3232670-3232777,3232965-3233027	AT1G09932.3 AT1G09932.3 CDS Phosphoglycerate mutase family protein
At1g09935	chr1:003234060	0.0	C/3234060-3234084,3234165-3234209,3234286-3234405,3234494-3234582,3234693-3234767,3234872-3234974,3235079-3235158,3235271-3235378,3235480-3235530	AT1G09935.1 CDS Phosphoglycerate mutase family protein [TAIR10] CDS go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_component cellular_component|GO:0005575||ND go_process metabolic process|GO:0008152||ISS go_function catalytic activity|GO:0003824||ISS product Phosphoglycerate mutase family protein note Phosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT1G58280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G09935.1p transcript_id AT1G09935.1 protein_id AT1G09935.1p transcript_id AT1G09935.1
AT1G09935	chr1:003234155	0.0	C/3234155-3234209,3234286-3234405,3234494-3234582,3234693-3234767,3234872-3234974,3235079-3235158,3235271-3235378,3235480-3235530	AT1G09935.2 AT1G09935.2 CDS Phosphoglycerate mutase family protein
At1g09940	chr1:003237224	0.0	C/3237224-3238336,3238496-3238737,3239025-3239262	AT1G09940.1 CDS Glutamyl-tRNA reductase family protein [TAIR10] CDS gene_syn F21M12.33, F21M12_33, HEMA2 gene HEMA2 function Encodes glutamyl-tRNA reductase. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins go_component cytoplasm|GO:0005737||IEA go_process porphyrin biosynthetic process|GO:0006779|8605295|TAS go_process heme biosynthetic process|GO:0006783|17416636|IMP go_process response to oxidative stress|GO:0006979|17416636|IEP go_process tetrapyrrole biosynthetic process|GO:0033014|17416636|IMP go_function glutamyl-tRNA reductase activity|GO:0008883|8605295|IGI product Glutamyl-tRNA reductase family protein note HEMA2; FUNCTIONS IN: glutamyl-tRNA reductase activity; INVOLVED IN: response to oxidative stress, heme biosynthetic process, tetrapyrrole biosynthetic process, porphyrin biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, conserved site (InterPro:IPR018214), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal (InterPro:IPR015896), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase (InterPro:IPR000343), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal (InterPro:IPR015895); BEST Arabidopsis thaliana protein match is: Glutamyl-tRNA reductase family protein (TAIR:AT1G58290.1); Has 5044 Blast hits to 5020 proteins in 1819 species: Archae - 226; Bacteria - 3662; Metazoa - 1; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 934 (source: NCBI BLink). protein_id AT1G09940.1p transcript_id AT1G09940.1 protein_id AT1G09940.1p transcript_id AT1G09940.1
At1g09950	chr1:003240849	0.0	C/3240849-3241541	AT1G09950.1 CDS RESPONSE TO ABA AND SALT 1 [TAIR10] CDS gene_syn F21M12.34, F21M12_34, RAS1, RESPONSE TO ABA AND SALT 1 gene RAS1 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product RESPONSE TO ABA AND SALT 1 note RESPONSE TO ABA AND SALT 1 (RAS1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, root, flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G58330.1); Has 520 Blast hits to 520 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09950.1p transcript_id AT1G09950.1 protein_id AT1G09950.1p transcript_id AT1G09950.1
At1g09960	chr1:003244258	0.0	W/3244258-3244795,3245159-3245886,3246023-3246086,3246215-3246258,3246560-3246718	AT1G09960.1 CDS sucrose transporter 4 [TAIR10] CDS gene_syn ATSUC4, ATSUT4, F21M12.35, F21M12_35, SUC4, SUCROSE TRANSPORTER 4, SUT4, sucrose transporter 4 gene SUT4 function low affinity (10mM) sucrose transporter in sieve elements (phloem) go_process sucrose transport|GO:0015770||IEA go_process transmembrane transport|GO:0055085||IEA go_component vacuole|GO:0005773|10948254|IDA go_component plasma membrane|GO:0005886|10948254|IDA go_component membrane|GO:0016020||ISS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function sucrose:hydrogen symporter activity|GO:0008506||ISS go_function sucrose transmembrane transporter activity|GO:0008515|10948254|IGI go_function sucrose transmembrane transporter activity|GO:0008515|10948254|IMP go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product sucrose transporter 4 note sucrose transporter 4 (SUT4); FUNCTIONS IN: sucrose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: sucrose transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 2 (TAIR:AT1G22710.1); Has 2568 Blast hits to 2441 proteins in 632 species: Archae - 30; Bacteria - 1104; Metazoa - 451; Fungi - 193; Plants - 403; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink). protein_id AT1G09960.1p transcript_id AT1G09960.1 protein_id AT1G09960.1p transcript_id AT1G09960.1
At1g09970	chr1:003252408	0.0	W/3252408-3254964,3255052-3255428	AT1G09970.2 CDS Leucine-rich receptor-like protein kinase family protein [TAIR10] CDS gene_syn F21M12.36, F21M12_36, LRR XI-23, RLK7, receptor-like kinase 7 gene LRR XI-23 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA go_function protein kinase activity|GO:0004672|18552232|IDA go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product Leucine-rich receptor-like protein kinase family protein note LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G19700.1); Has 205125 Blast hits to 136515 proteins in 4580 species: Archae - 168; Bacteria - 22290; Metazoa - 61642; Fungi - 10712; Plants - 85268; Viruses - 403; Other Eukaryotes - 24642 (source: NCBI BLink). protein_id AT1G09970.2p transcript_id AT1G09970.2 protein_id AT1G09970.2p transcript_id AT1G09970.2
At1g09970	chr1:003252408	0.0	W/3252408-3254964,3255055-3255428	AT1G09970.1 CDS Leucine-rich receptor-like protein kinase family protein [TAIR10] CDS gene_syn F21M12.36, F21M12_36, LRR XI-23, RLK7, receptor-like kinase 7 gene LRR XI-23 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA go_function protein kinase activity|GO:0004672|18552232|IDA go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product Leucine-rich receptor-like protein kinase family protein note LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G19700.1); Has 209037 Blast hits to 140396 proteins in 4701 species: Archae - 173; Bacteria - 22554; Metazoa - 63531; Fungi - 11010; Plants - 85931; Viruses - 478; Other Eukaryotes - 25360 (source: NCBI BLink). protein_id AT1G09970.1p transcript_id AT1G09970.1 protein_id AT1G09970.1p transcript_id AT1G09970.1
At1g09980	chr1:003256541	0.0	C/3256541-3256843,3256935-3256985,3257086-3257291,3257385-3257643,3257878-3258126,3258208-3258267,3258354-3258537,3258637-3258767,3258865-3259104,3259495-3259549,3259642-3259895,3260178-3260332,3260509-3260594,3260694-3260866	AT1G09980.2 CDS Putative serine esterase family protein [TAIR10] CDS gene_syn T27I1.1 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND product Putative serine esterase family protein note Putative serine esterase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3657 (InterPro:IPR022122), Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: Putative serine esterase family protein (TAIR:AT1G58350.2); Has 481 Blast hits to 386 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 2; Plants - 83; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). protein_id AT1G09980.2p transcript_id AT1G09980.2 protein_id AT1G09980.2p transcript_id AT1G09980.2
At1g09980	chr1:003256541	0.0	C/3256541-3256843,3256935-3256985,3257086-3257291,3257385-3257643,3257878-3258126,3258208-3258267,3258354-3258537,3258637-3258770,3258865-3259104,3259495-3259549,3259642-3259895,3260178-3260332,3260509-3260594,3260694-3260866	AT1G09980.1 CDS Putative serine esterase family protein [TAIR10] CDS gene_syn T27I1.1 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND product Putative serine esterase family protein note Putative serine esterase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3657 (InterPro:IPR022122), Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: Putative serine esterase family protein (TAIR:AT1G58350.2); Has 480 Blast hits to 383 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 283; Fungi - 2; Plants - 87; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). protein_id AT1G09980.1p transcript_id AT1G09980.1 protein_id AT1G09980.1p transcript_id AT1G09980.1
AT1G09980	chr1:003256541	0.0	C/3256541-3256843,3256935-3256985,3257086-3257291,3257385-3257643,3257878-3258126,3258208-3258267,3258354-3258537,3258637-3258770,3258865-3259104,3259495-3259549,3259642-3259895,3260178-3260332,3260509-3260594,3260694-3260866	AT1G09980.3 AT1G09980.3 CDS Putative serine esterase family protein
At1g09995	chr1:003262750	0.0	C/3262750-3262908,3263351-3263458	AT1G09995.1 CDS DNA repair DEAD helicase RAD3/XP-D subfamily protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product DNA repair DEAD helicase RAD3/XP-D subfamily protein note DNA repair DEAD helicase RAD3/XP-D subfamily protein; BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G79890.1); Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G09995.1p transcript_id AT1G09995.1 protein_id AT1G09995.1p transcript_id AT1G09995.1
AT1G09995	chr1:003262750	0.0	C/3262750-3262908,3263351-3263458	AT1G09995.3 AT1G09995.3 CDS DNA repair DEAD helicase RAD3/XP-D subfamily protein
AT1G09995	chr1:003262750	0.0	C/3262750-3262908,3263351-3263458	AT1G09995.5 AT1G09995.5 CDS DNA repair DEAD helicase RAD3/XP-D subfamily protein
AT1G09995	chr1:003262884	0.0	C/3262884-3263018,3263351-3263458	AT1G09995.2 AT1G09995.2 CDS DNA repair DEAD helicase RAD3/XP-D subfamily protein
AT1G09995	chr1:003262884	0.0	C/3262884-3263018,3263351-3263458	AT1G09995.4 AT1G09995.4 CDS DNA repair DEAD helicase RAD3/XP-D subfamily protein
At1g10000	chr1:003263877	0.0	C/3263877-3264788	AT1G10000.1 CDS Ribonuclease H-like superfamily protein [TAIR10] CDS gene_syn T27I1.2, T27I1_2 go_function nucleic acid binding|GO:0003676||IEA go_function ribonuclease H activity|GO:0004523||IEA go_process biological_process|GO:0008150||ND product Ribonuclease H-like superfamily protein note Ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT2G06845.1); Has 585 Blast hits to 585 proteins in 17 species: Archae - 2; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 581; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G10000.1p transcript_id AT1G10000.1 protein_id AT1G10000.1p transcript_id AT1G10000.1
AT1G10010	chr1:003265973	0.0	W/3265973-3266297,3266979-3267072,3267187-3267401,3267500-3267642,3267881-3268108,3268301-3268726	AT1G10010.2 AT1G10010.2 CDS amino acid permease 8
At1g10010	chr1:003265976	0.0	W/3265976-3266297,3266979-3267072,3267187-3267401,3267500-3267642,3267881-3268108,3268301-3268726	AT1G10010.1 CDS amino acid permease 8 [TAIR10] CDS gene_syn AAP8, ATAAP8, T27I1.3, T27I1_3, amino acid permease 8 gene AAP8 function Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity. go_component membrane|GO:0016020|12244056|ISS go_process amino acid transport|GO:0006865|12244056|IGI go_function amino acid transmembrane transporter activity|GO:0015171|12244056|IGI go_function amino acid transmembrane transporter activity|GO:0015171||ISS product amino acid permease 8 note amino acid permease 8 (AAP8); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 2959 Blast hits to 2943 proteins in 246 species: Archae - 0; Bacteria - 24; Metazoa - 771; Fungi - 529; Plants - 1378; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink). protein_id AT1G10010.1p transcript_id AT1G10010.1 protein_id AT1G10010.1p transcript_id AT1G10010.1
At1g10020	chr1:003269939	0.0	C/3269939-3270698,3271107-3271732	AT1G10020.1 CDS formin-like protein (DUF1005) [TAIR10] CDS gene_syn T27I1.4, T27I1_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1005) note Protein of unknown function (DUF1005); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT4G29310.1); Has 158 Blast hits to 158 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 144; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G10020.1p transcript_id AT1G10020.1 protein_id AT1G10020.1p transcript_id AT1G10020.1
At1g10030	chr1:003273972	0.0	W/3273972-3274086,3275254-3275460,3275564-3275631	AT1G10030.1 CDS homolog of yeast ergosterol28 [TAIR10] CDS gene_syn ERG28, T27I1.5, T27I1_5, homolog of yeast ergosterol28 gene ERG28 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_component integral to membrane|GO:0016021||ISS go_process biological_process|GO:0008150||ND product homolog of yeast ergosterol28 note homolog of yeast ergosterol28 (ERG28); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Erg28-like (InterPro:IPR005352); Has 223 Blast hits to 223 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 94; Plants - 48; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G10030.1p transcript_id AT1G10030.1 protein_id AT1G10030.1p transcript_id AT1G10030.1
At1g10040	chr1:003276108	0.0	C/3276108-3276179,3276262-3276359,3276437-3276566,3276657-3276709,3276852-3276907,3277001-3277161,3277332-3277586,3277765-3277835,3278045-3278112,3278190-3278464	AT1G10040.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T27I1.6, T27I1_6 go_component cellular_component|GO:0005575||ND product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G25770.1); Has 823 Blast hits to 815 proteins in 221 species: Archae - 0; Bacteria - 56; Metazoa - 168; Fungi - 260; Plants - 184; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink). protein_id AT1G10040.1p transcript_id AT1G10040.1 protein_id AT1G10040.1p transcript_id AT1G10040.1
At1g10040	chr1:003276124	0.0	C/3276124-3276179,3276258-3276359,3276437-3276566,3276657-3276709,3276852-3276907,3277001-3277161,3277332-3277586,3277765-3277835,3278045-3278112,3278190-3278464	AT1G10040.2 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T27I1.6, T27I1_6 go_component cellular_component|GO:0005575||ND product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G25770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10040.2p transcript_id AT1G10040.2 protein_id AT1G10040.2p transcript_id AT1G10040.2
AT1G10050	chr1:003279075	0.0	W/3279075-3279156,3279256-3279607,3279690-3279849,3280286-3280632,3280715-3280874,3280971-3281317,3281440-3281617,3281701-3282246,3282329-3283444	AT1G10050.3 AT1G10050.3 CDS glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
At1g10050	chr1:003279270	0.0	W/3279270-3279607,3279690-3279849,3280286-3280632,3280715-3280874,3280971-3281317,3281440-3281617,3281701-3282246,3282329-3283444	AT1G10050.1 CDS glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [TAIR10] CDS gene_syn ATXYN2, T27I1.7, T27I1_7 function Encodes a putative glycosyl hydrolase family 10 protein (xylanase). go_process carbohydrate metabolic process|GO:0005975||IEA go_component cellular_component|GO:0005575||ND go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS go_function endo-1,4-beta-xylanase activity|GO:0031176|12154138|ISS product glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein note glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1); Has 2595 Blast hits to 2245 proteins in 443 species: Archae - 10; Bacteria - 1438; Metazoa - 33; Fungi - 351; Plants - 403; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink). protein_id AT1G10050.1p transcript_id AT1G10050.1 protein_id AT1G10050.1p transcript_id AT1G10050.1
AT1G10050	chr1:003279270	0.0	W/3279270-3279607,3279690-3279849,3280286-3280632,3280715-3280874,3280971-3281317,3281440-3281617,3281701-3282246,3282329-3283444	AT1G10050.2 AT1G10050.2 CDS glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
AT1G10060	chr1:003284157	0.0	W/3284157-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286358,3286534-3286577	AT1G10060.6 AT1G10060.6 CDS branched-chain amino acid transaminase 1
AT1G10060	chr1:003284157	0.0	W/3284157-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.5 AT1G10060.5 CDS branched-chain amino acid transaminase 1
AT1G10060	chr1:003284157	0.0	W/3284157-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286728	AT1G10060.4 AT1G10060.4 CDS branched-chain amino acid transaminase 1
At1g10060	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286358,3286534-3286577	AT1G10060.1 CDS branched-chain amino acid transaminase 1 [TAIR10] CDS gene_syn ATBCAT-1, BCAT-1, T27I1.8, T27I1_8, branched-chain amino acid transaminase 1 gene BCAT-1 function encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. go_process metabolic process|GO:0008152||IEA go_process branched chain family amino acid metabolic process|GO:0009081||IEA go_component mitochondrion|GO:0005739|12068099|IDA go_function catalytic activity|GO:0003824||ISS go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI go_function branched-chain-amino-acid transaminase activity|GO:0004084|15821880|IDA go_function protein binding|GO:0005515|19452453|IPI product branched-chain amino acid transaminase 1 note branched-chain amino acid transaminase 1 (BCAT-1); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, protein binding, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2); Has 6519 Blast hits to 6519 proteins in 2279 species: Archae - 103; Bacteria - 4487; Metazoa - 263; Fungi - 384; Plants - 208; Viruses - 0; Other Eukaryotes - 1074 (source: NCBI BLink). protein_id AT1G10060.1p transcript_id AT1G10060.1 protein_id AT1G10060.1p transcript_id AT1G10060.1
At1g10060	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.2 CDS branched-chain amino acid transaminase 1 [TAIR10] CDS gene_syn ATBCAT-1, BCAT-1, T27I1.8, T27I1_8, branched-chain amino acid transaminase 1 gene BCAT-1 function encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. go_process metabolic process|GO:0008152||IEA go_process branched chain family amino acid metabolic process|GO:0009081||IEA go_component mitochondrion|GO:0005739|12068099|IDA go_function catalytic activity|GO:0003824||ISS go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI go_function branched-chain-amino-acid transaminase activity|GO:0004084|15821880|IDA go_function protein binding|GO:0005515|19452453|IPI product branched-chain amino acid transaminase 1 note branched-chain amino acid transaminase 1 (BCAT-1); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, protein binding, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2); Has 12211 Blast hits to 12211 proteins in 2505 species: Archae - 154; Bacteria - 7688; Metazoa - 265; Fungi - 412; Plants - 248; Viruses - 0; Other Eukaryotes - 3444 (source: NCBI BLink). protein_id AT1G10060.2p transcript_id AT1G10060.2 protein_id AT1G10060.2p transcript_id AT1G10060.2
AT1G10060	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286728	AT1G10060.7 AT1G10060.7 CDS branched-chain amino acid transaminase 1
At1g10060	chr1:003285233	0.0	W/3285233-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.3 CDS branched-chain amino acid transaminase 1 [TAIR10] CDS gene_syn ATBCAT-1, BCAT-1, T27I1.8, T27I1_8, branched-chain amino acid transaminase 1 gene BCAT-1 function encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. go_process metabolic process|GO:0008152||IEA go_process branched chain family amino acid metabolic process|GO:0009081||IEA go_component mitochondrion|GO:0005739|12068099|IDA go_function catalytic activity|GO:0003824||ISS go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI go_function branched-chain-amino-acid transaminase activity|GO:0004084|15821880|IDA go_function protein binding|GO:0005515|19452453|IPI product branched-chain amino acid transaminase 1 note branched-chain amino acid transaminase 1 (BCAT-1); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, protein binding, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10060.3p transcript_id AT1G10060.3 protein_id AT1G10060.3p transcript_id AT1G10060.3
At1g10070	chr1:003288255	0.0	W/3288255-3288320,3288431-3288504,3288602-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.1 CDS branched-chain amino acid transaminase 2 [TAIR10] CDS gene_syn ATBCAT-2, BCAT-2, T27I1.9, T27I1_9, branched-chain amino acid transaminase 2 gene BCAT-2 function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. go_process metabolic process|GO:0008152||IEA go_process branched chain family amino acid metabolic process|GO:0009081||IEA go_component chloroplast|GO:0009507|12068099|IDA go_function catalytic activity|GO:0003824||ISS go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI product branched-chain amino acid transaminase 2 note branched-chain amino acid transaminase 2 (BCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1); Has 12153 Blast hits to 12153 proteins in 2497 species: Archae - 154; Bacteria - 7615; Metazoa - 264; Fungi - 416; Plants - 254; Viruses - 0; Other Eukaryotes - 3450 (source: NCBI BLink). protein_id AT1G10070.1p transcript_id AT1G10070.1 protein_id AT1G10070.1p transcript_id AT1G10070.1
At1g10070	chr1:003288255	0.0	W/3288255-3288320,3288431-3288504,3288602-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.2 CDS branched-chain amino acid transaminase 2 [TAIR10] CDS gene_syn ATBCAT-2, BCAT-2, T27I1.9, T27I1_9, branched-chain amino acid transaminase 2 gene BCAT-2 function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. go_process metabolic process|GO:0008152||IEA go_process branched chain family amino acid metabolic process|GO:0009081||IEA go_component chloroplast|GO:0009507|12068099|IDA go_function catalytic activity|GO:0003824||ISS go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI product branched-chain amino acid transaminase 2 note branched-chain amino acid transaminase 2 (BCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10070.2p transcript_id AT1G10070.2 protein_id AT1G10070.2p transcript_id AT1G10070.2
At1g10070	chr1:003288672	0.0	W/3288672-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.3 CDS branched-chain amino acid transaminase 2 [TAIR10] CDS gene_syn ATBCAT-2, BCAT-2, T27I1.9, T27I1_9, branched-chain amino acid transaminase 2 gene BCAT-2 function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. go_process metabolic process|GO:0008152||IEA go_process branched chain family amino acid metabolic process|GO:0009081||IEA go_component chloroplast|GO:0009507|12068099|IDA go_function catalytic activity|GO:0003824||ISS go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI product branched-chain amino acid transaminase 2 note branched-chain amino acid transaminase 2 (BCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10070.3p transcript_id AT1G10070.3 protein_id AT1G10070.3p transcript_id AT1G10070.3
At1g10090	chr1:003290572	0.0	C/3290572-3290886,3290976-3291209,3291679-3291954,3292051-3292327,3292599-3292897,3293270-3293455,3294130-3294339,3294462-3294525,3294676-3294822,3294991-3295271	AT1G10090.1 CDS Early-responsive to dehydration stress protein (ERD4) [TAIR10] CDS gene_syn T27I1.11, T27I1_11 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Early-responsive to dehydration stress protein (ERD4) note Early-responsive to dehydration stress protein (ERD4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: lipases;hydrolases, acting on ester bonds (TAIR:AT1G58520.1); Has 1417 Blast hits to 1261 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 691; Plants - 423; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G10090.1p transcript_id AT1G10090.1 protein_id AT1G10090.1p transcript_id AT1G10090.1
At1g10095	chr1:003297478	0.0	C/3297478-3297597,3297756-3297992,3298340-3298390,3298489-3298572,3298745-3298822,3299054-3299122,3299360-3299450,3299633-3299743,3299838-3300176,3300271-3300353	AT1G10095.1 CDS Protein prenylyltransferase superfamily protein [TAIR10] CDS go_process protein amino acid prenylation|GO:0018346||IEA go_function protein prenyltransferase activity|GO:0008318||IEA go_component cellular_component|GO:0005575||ND product Protein prenylyltransferase superfamily protein note Protein prenylyltransferase superfamily protein; FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: protein amino acid prenylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); Has 876 Blast hits to 751 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 510; Fungi - 118; Plants - 152; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). protein_id AT1G10095.1p transcript_id AT1G10095.1 protein_id AT1G10095.1p transcript_id AT1G10095.1
AT1G10095	chr1:003297675	0.0	C/3297675-3297992,3298340-3298390,3298489-3298572,3298745-3298822,3299054-3299122,3299360-3299450,3299633-3299743,3299838-3300176,3300271-3300353	AT1G10095.3 AT1G10095.3 CDS Protein prenylyltransferase superfamily protein
AT1G10095	chr1:003298230	0.0	C/3298230-3298244,3298340-3298390,3298489-3298572,3298745-3298822,3299054-3299122,3299360-3299450,3299633-3299743,3299838-3300176,3300271-3300353	AT1G10095.2 AT1G10095.2 CDS Protein prenylyltransferase superfamily protein
AT1G10095	chr1:003298334	0.0	C/3298334-3298390,3298489-3298572,3298745-3298822,3299054-3299122,3299360-3299450,3299633-3299743,3299838-3300176,3300271-3300353	AT1G10095.4 AT1G10095.4 CDS Protein prenylyltransferase superfamily protein
At1g10100	chr1:003300697	0.0	C/3300697-3300836,3300967-3301098,3301200-3301254,3301328-3301489	AT1G10100.1 CDS hypothetical protein [TAIR10] CDS gene_syn T27I1.17, T27I1_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10100.1p transcript_id AT1G10100.1 protein_id AT1G10100.1p transcript_id AT1G10100.1
At1g10110	chr1:003302739	0.0	W/3302739-3303938	AT1G10110.1 CDS F-box family protein [TAIR10] CDS gene_syn T27I1.14, T27I1_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22165.1); Has 235 Blast hits to 233 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10110.1p transcript_id AT1G10110.1 protein_id AT1G10110.1p transcript_id AT1G10110.1
At1g10120	chr1:003304228	0.0	C/3304228-3304250,3304341-3304425,3304515-3304634,3304727-3304798,3304897-3304965,3305051-3305116,3305219-3305410,3305511-3305984	AT1G10120.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn T27I1.15, T27I1_15 go_component nucleus|GO:0005634|14617066|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.2); Has 2297 Blast hits to 2289 proteins in 121 species: Archae - 0; Bacteria - 2; Metazoa - 55; Fungi - 29; Plants - 2202; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G10120.1p transcript_id AT1G10120.1 protein_id AT1G10120.1p transcript_id AT1G10120.1
AT1G10120	chr1:003304228	0.0	C/3304228-3304250,3304341-3304425,3304515-3304634,3304727-3304798,3304897-3304965,3305051-3305116,3305219-3305410,3305511-3305984	AT1G10120.2 AT1G10120.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g10130	chr1:003311139	0.0	W/3311139-3311171,3311372-3311422,3311527-3311560,3311966-3311983,3312399-3312535,3312921-3312995,3313228-3313273,3313604-3313663,3313764-3313844,3314106-3314191,3314347-3314448,3314744-3314797,3315074-3315175,3315546-3315604,3315895-3316039,3316382-3316489,3316928-3317080,3317338-3317442,3317799-3317995,3318155-3318263,3318368-3318466,3318545-3318690,3318846-3318903,3319092-3319184,3319650-3319700,3319904-3320035,3320129-3320230,3320567-3320621,3320783-3320868,3320985-3321133,3321212-3321317,3321407-3321460,3321697-3321742,3321877-3321941	AT1G10130.1 CDS endoplasmic reticulum-type calcium-transporting ATPase 3 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, ATECA3, ECA3, T27I1.16, T27I1_16, endoplasmic reticulum-type calcium-transporting ATPase 3 gene ECA3 function Encodes a golgi localized P2A-type Ca2+ ATPase involved in Mn nutrition and homeostasis. go_component Golgi apparatus|GO:0005794|18024560|IDA go_component endomembrane system|GO:0012505|18567829|IDA go_process calcium ion transport|GO:0006816|10433975|ISS go_process manganese ion transport|GO:0006828|18024560|IGI go_process root development|GO:0048364|18567829|IMP go_process manganese ion homeostasis|GO:0055071|18024560|IMP go_function calcium-transporting ATPase activity|GO:0005388|10433975|ISS go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS go_function calcium-transporting ATPase activity|GO:0005388|18567829|IMP go_function calcium-transporting ATPase activity|GO:0005388||ISS go_function calmodulin binding|GO:0005516|11782485|ISS go_function manganese-transporting ATPase activity|GO:0015410|18567829|IMP product endoplasmic reticulum-type calcium-transporting ATPase 3 note endoplasmic reticulum-type calcium-transporting ATPase 3 (ECA3); FUNCTIONS IN: manganese-transporting ATPase activity, calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: manganese ion transport, calcium ion transport, root development, manganese ion homeostasis; LOCATED IN: endomembrane system, Golgi apparatus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: endomembrane-type CA-ATPase 4 (TAIR:AT1G07670.1); Has 52019 Blast hits to 33942 proteins in 3233 species: Archae - 1100; Bacteria - 36533; Metazoa - 4334; Fungi - 2931; Plants - 2474; Viruses - 3; Other Eukaryotes - 4644 (source: NCBI BLink). protein_id AT1G10130.1p transcript_id AT1G10130.1 protein_id AT1G10130.1p transcript_id AT1G10130.1
At1g10140	chr1:003322970	0.0	C/3322970-3323473	AT1G10140.1 CDS Uncharacterised conserved protein UCP031279 [TAIR10] CDS gene_syn F14N23.2, F14N23_2 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Uncharacterised conserved protein UCP031279 note Uncharacterised conserved protein UCP031279; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031279 (InterPro:IPR016972); BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP031279 (TAIR:AT1G58420.1); Has 69 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G10140.1p transcript_id AT1G10140.1 protein_id AT1G10140.1p transcript_id AT1G10140.1
At1g10150	chr1:003326160	0.0	W/3326160-3327404	AT1G10150.1 CDS Carbohydrate-binding protein [TAIR10] CDS gene_syn ATPP2-A10, F14N23.3, F14N23_3, phloem protein 2-A10 go_component mitochondrion|GO:0005739||IEA go_function carbohydrate binding|GO:0030246|12529520|ISS product Carbohydrate-binding protein note Carbohydrate-binding protein; FUNCTIONS IN: carbohydrate binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Carbohydrate-binding protein (TAIR:AT1G59510.1); Has 114 Blast hits to 112 proteins in 22 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G10150.1p transcript_id AT1G10150.1 protein_id AT1G10150.1p transcript_id AT1G10150.1
At1g10155	chr1:003327637	0.0	C/3327637-3328036,3328171-3328262,3328386-3328448	AT1G10155.1 CDS phloem protein 2-A10 [TAIR10] CDS gene_syn ATPP2-A10, PP2-A10, phloem protein 2-A10 gene PP2-A10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product phloem protein 2-A10 note phloem protein 2-A10 (PP2-A10); BEST Arabidopsis thaliana protein match is: phloem protein 2-A9 (TAIR:AT1G31200.1); Has 113 Blast hits to 113 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10155.1p transcript_id AT1G10155.1 protein_id AT1G10155.1p transcript_id AT1G10155.1
At1g10160	chr1:003328971	0.0	W/3328971-3333470	AT1G10160.1 [TAIR10] mRNA
At1g10160	chr1:003328971	0.0	W/3328971-3333470	AT1G10160 [TAIR10] TE pseudo gene_syn F14N23.4, F14N23_4 note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
AT1G10170	chr1:003333789	0.0	C/3333789-3333863,3333937-3337491	AT1G10170.4 AT1G10170.4 CDS NF-X-like 1
AT1G10170	chr1:003333925	0.0	C/3333925-3337029,3337246-3337491	AT1G10170.2 AT1G10170.2 CDS NF-X-like 1
At1g10170	chr1:003333925	0.0	C/3333925-3337491	AT1G10170.1 CDS NF-X-like 1 [TAIR10] CDS gene_syn ATNFXL1, F14N23.5, F14N23_5, NF-X-like 1, NFXL1 gene NFXL1 function Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response. go_function sequence-specific DNA binding transcription factor activity|GO:0003700||IEA go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634|16905136|IDA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to light intensity|GO:0009642|16905136|IMP go_process response to salt stress|GO:0009651|16905136|IMP go_process salicylic acid biosynthetic process|GO:0009697|18069941|IMP go_process response to microbial phytotoxin|GO:0010188|18069941|IMP go_process defense response to bacterium|GO:0042742|18069941|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product NF-X-like 1 note NF-X-like 1 (NFXL1); FUNCTIONS IN: zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (TAIR:AT5G05660.1); Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0; Bacteria - 123; Metazoa - 4814; Fungi - 547; Plants - 327; Viruses - 10; Other Eukaryotes - 960 (source: NCBI BLink). protein_id AT1G10170.1p transcript_id AT1G10170.1 protein_id AT1G10170.1p transcript_id AT1G10170.1
AT1G10170	chr1:003333925	0.0	C/3333925-3337491	AT1G10170.3 AT1G10170.3 CDS NF-X-like 1
At1g10180	chr1:003338381	0.0	C/3338381-3338648,3338739-3338875,3339047-3339235,3339322-3339828,3339912-3340929,3341076-3341170,3341399-3341494	AT1G10180.1 CDS LOW protein: exocyst complex component-like protein [TAIR10] CDS gene_syn F14N23.6, F14N23_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1); Has 132 Blast hits to 132 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G10180.1p transcript_id AT1G10180.1 protein_id AT1G10180.1p transcript_id AT1G10180.1
At1g10190	chr1:003343765	0.0	C/3343765-3344130,3344236-3344379,3344472-3344525,3344676-3344828,3344923-3345141,3345242-3345334,3345430-3345591	AT1G10190.1 CDS NEP-interacting protein, putative (DUF239) [TAIR10] CDS gene_syn F14N23.7, F14N23_7 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of Unknown Function (DUF239) note Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G15050.1); Has 640 Blast hits to 606 proteins in 22 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 4; Plants - 629; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10190.1p transcript_id AT1G10190.1 protein_id AT1G10190.1p transcript_id AT1G10190.1
At1g10200	chr1:003346677	0.0	C/3346677-3346883,3347021-3347110,3347198-3347241,3347341-3347437,3347629-3347763	AT1G10200.1 CDS GATA type zinc finger transcription factor family protein [TAIR10] CDS gene_syn F14N23.8, F14N23_8, WLIM1 gene WLIM1 go_component plasma membrane|GO:0005886|17317660|IDA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product GATA type zinc finger transcription factor family protein note WLIM1; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 4354 Blast hits to 2727 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 3462; Fungi - 43; Plants - 506; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink). protein_id AT1G10200.1p transcript_id AT1G10200.1 protein_id AT1G10200.1p transcript_id AT1G10200.1
AT1G10200	chr1:003346677	0.0	C/3346677-3346883,3347021-3347110,3347198-3347241,3347341-3347446	AT1G10200.2 AT1G10200.2 CDS GATA type zinc finger transcription factor family protein
At1g10210	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.1 CDS mitogen-activated protein kinase 1 [TAIR10] CDS gene_syn ATMPK1, F14N23.9, F14N23_9, MITOGEN-ACTIVATED PROTEIN KINASE, MPK1, mitogen-activated protein kinase 1 gene MPK1 function Encodes ATMPK1. go_process signal transduction|GO:0007165|12119167|IC go_process auxin mediated signaling pathway|GO:0009734|8130795|TAS go_function MAP kinase activity|GO:0004707|12119167|ISS go_function MAP kinase activity|GO:0004707|8130795|IDA go_function kinase activity|GO:0016301||ISS product mitogen-activated protein kinase 1 note mitogen-activated protein kinase 1 (MPK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase homolog 2 (TAIR:AT1G59580.2); Has 120133 Blast hits to 118709 proteins in 4414 species: Archae - 90; Bacteria - 12052; Metazoa - 45818; Fungi - 12226; Plants - 29321; Viruses - 480; Other Eukaryotes - 20146 (source: NCBI BLink). protein_id AT1G10210.1p transcript_id AT1G10210.1 protein_id AT1G10210.1p transcript_id AT1G10210.1
At1g10210	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.2 CDS mitogen-activated protein kinase 1 [TAIR10] CDS gene_syn ATMPK1, F14N23.9, F14N23_9, MITOGEN-ACTIVATED PROTEIN KINASE, MPK1, mitogen-activated protein kinase 1 gene MPK1 function Encodes ATMPK1. go_process signal transduction|GO:0007165|12119167|IC go_process auxin mediated signaling pathway|GO:0009734|8130795|TAS go_function MAP kinase activity|GO:0004707|12119167|ISS go_function MAP kinase activity|GO:0004707|8130795|IDA go_function kinase activity|GO:0016301||ISS product mitogen-activated protein kinase 1 note mitogen-activated protein kinase 1 (ATMPK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase homolog 2 (TAIR:AT1G59580.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10210.2p transcript_id AT1G10210.2 protein_id AT1G10210.2p transcript_id AT1G10210.2
AT1G10210	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.3 AT1G10210.3 CDS mitogen-activated protein kinase 1
AT1G10220	chr1:003352159	0.0	W/3352159-3352422,3352456-3352815	AT1G10220.3 AT1G10220.3 CDS ZCF37, putative
At1g10220	chr1:003352159	0.0	W/3352159-3352632,3354361-3354690	AT1G10220.1 CDS ZCF37, putative [TAIR10] CDS gene_syn F14N23.10, F14N23_10 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: ZCF37 (TAIR:AT1G59590.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G10220.1p transcript_id AT1G10220.1 protein_id AT1G10220.1p transcript_id AT1G10220.1
At1g10220	chr1:003354364	0.0	W/3354364-3354690	AT1G10220.2 CDS ZCF37, putative [TAIR10] CDS gene_syn F14N23.10, F14N23_10 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10220.2p transcript_id AT1G10220.2 protein_id AT1G10220.2p transcript_id AT1G10220.2
At1g10230	chr1:003355675	0.0	W/3355675-3356148	AT1G10230.1 CDS E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein [TAIR10] CDS gene_syn ASK18, F14N23.11, F14N23_11, SK18, SKP1-like 18 gene SK18 go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA go_function ubiquitin-protein ligase activity|GO:0004842||ISS go_function protein binding|GO:0005515|14749489|IPI product SKP1-like 18 note SKP1-like 18 (SK18); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 15 (TAIR:AT3G25650.1); Has 1421 Blast hits to 1417 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 174; Plants - 532; Viruses - 11; Other Eukaryotes - 171 (source: NCBI BLink). protein_id AT1G10230.1p transcript_id AT1G10230.1 protein_id AT1G10230.1p transcript_id AT1G10230.1
At1g10240	chr1:003356835	0.0	C/3356835-3357455,3357651-3358094,3358294-3359271	AT1G10240.1 CDS FAR1-related sequence 11 [TAIR10] CDS gene_syn F14N23.12, F14N23_12, FAR1-related sequence 11, FRS11 gene FRS11 go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process response to red or far red light|GO:0009639||ISS product FAR1-related sequence 11 note FAR1-related sequence 11 (FRS11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 10 (TAIR:AT5G28530.1); Has 1389 Blast hits to 1253 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 83; Plants - 1296; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G10240.1p transcript_id AT1G10240.1 protein_id AT1G10240.1p transcript_id AT1G10240.1
AT1G10240	chr1:003356835	0.0	C/3356835-3357455,3357651-3358094,3358294-3359271	AT1G10240.2 AT1G10240.2 CDS FAR1-related sequence 11
At1g10250	chr1:003360137	0.0	C/3360137-3360232,3360325-3360462	AT1G10250.1 CDS paired amphipathic helix Sin3-like protein [TAIR10] CDS gene_syn F14N23.13, F14N23_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1); Has 310 Blast hits to 310 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 23; Plants - 97; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT1G10250.1p transcript_id AT1G10250.1 protein_id AT1G10250.1p transcript_id AT1G10250.1
At1g10260	chr1:003360526	0.0	C/3360526-3361247	AT1G10260.1 [TAIR10] mRNA
At1g10260	chr1:003360526	0.0	C/3360526-3361247	AT1G10260 [TAIR10] TE pseudo gene_syn F14N23.14, F14N23_14 note Transposable element gene, copia-like retrotransposon family, has a 3.6e-19 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)
At1g10270	chr1:003363535	0.0	W/3363535-3366276	AT1G10270.1 CDS glutamine-rich protein 23 [TAIR10] CDS gene_syn F14N23.15, F14N23_15, GRP23, glutamine-rich protein 23 gene GRP23 go_function binding|GO:0005488||IEA go_component nucleus|GO:0005634|16489121|IDA go_process embryo development|GO:0009790|16489121|IMP go_process cell division|GO:0051301|16489121|IMP product glutamine-rich protein 23 note glutamine-rich protein 23 (GRP23); FUNCTIONS IN: binding; INVOLVED IN: embryo development, cell division; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G49240.1); Has 43483 Blast hits to 18975 proteins in 889 species: Archae - 27; Bacteria - 1738; Metazoa - 7010; Fungi - 2820; Plants - 24944; Viruses - 157; Other Eukaryotes - 6787 (source: NCBI BLink). protein_id AT1G10270.1p transcript_id AT1G10270.1 protein_id AT1G10270.1p transcript_id AT1G10270.1
At1g10280	chr1:003366795	0.0	C/3366795-3367436,3368143-3368739	AT1G10280.1 CDS Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [TAIR10] CDS gene_syn F14N23.16, F14N23_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein note Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G21310.1); Has 584 Blast hits to 584 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 556; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). protein_id AT1G10280.1p transcript_id AT1G10280.1 protein_id AT1G10280.1p transcript_id AT1G10280.1
AT1G10280	chr1:003366795	0.0	C/3366795-3367436,3368143-3368739	AT1G10280.2 AT1G10280.2 CDS Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
At1g10290	chr1:003370774	0.0	W/3370774-3370914,3371198-3371248,3371345-3371465,3371595-3371687,3372032-3372093,3372264-3372381,3372528-3372864,3372970-3373117,3373444-3373545,3373626-3373745,3374013-3374096,3374181-3374308,3374412-3374496,3374614-3374752,3374978-3375054,3375125-3375181,3375464-3375608,3375696-3375835,3376175-3376288,3376402-3376469,3376553-3376725,3376879-3377120	AT1G10290.1 CDS dynamin-like protein 6 [TAIR10] CDS gene_syn ADL6, DRP2A, DYNAMIN-RELATED PROTEIN 2A, F14N23.17, F14N23_17, dynamin-like protein 6 gene ADL6 function involved in trafficking from the trans-Golgi Network to the central vacuole. go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_component Golgi apparatus|GO:0005794|11449048|IDA go_process Golgi to vacuole transport|GO:0006896|11449048|IMP go_function GTPase activity|GO:0003924|11449048|ISS product dynamin-like protein 6 note dynamin-like protein 6 (ADL6); FUNCTIONS IN: GTPase activity; INVOLVED IN: Golgi to vacuole transport; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Pleckstrin homology-type (InterPro:IPR011993), Dynamin, GTPase region, conserved site (InterPro:IPR019762), Dynamin, GTPase domain (InterPro:IPR001401), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: dynamin-like 3 (TAIR:AT1G59610.1); Has 3284 Blast hits to 3098 proteins in 352 species: Archae - 4; Bacteria - 126; Metazoa - 1435; Fungi - 709; Plants - 704; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink). protein_id AT1G10290.1p transcript_id AT1G10290.1 protein_id AT1G10290.1p transcript_id AT1G10290.1
At1g10300	chr1:003378142	0.0	W/3378142-3379248,3379270-3380226	AT1G10300.1 CDS Nucleolar GTP-binding protein [TAIR10] CDS gene_syn F14N23.18, F14N23_18 go_function GTP binding|GO:0005525||IEA product Nucleolar GTP-binding protein note Nucleolar GTP-binding protein; FUNCTIONS IN: GTP binding; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), NOG, C-terminal (InterPro:IPR012973); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G50920.1); Has 8833 Blast hits to 8598 proteins in 2008 species: Archae - 347; Bacteria - 5084; Metazoa - 895; Fungi - 393; Plants - 246; Viruses - 2; Other Eukaryotes - 1866 (source: NCBI BLink). protein_id AT1G10300.1p transcript_id AT1G10300.1 protein_id AT1G10300.1p transcript_id AT1G10300.1
AT1G10300	chr1:003378142	0.0	W/3378142-3379248,3379270-3380226	AT1G10300.3 AT1G10300.3 CDS Nucleolar GTP-binding protein
AT1G10300	chr1:003378229	0.0	W/3378229-3379248,3379270-3380226	AT1G10300.2 AT1G10300.2 CDS Nucleolar GTP-binding protein
At1g10310	chr1:003381733	0.0	C/3381733-3381802,3382025-3382197,3382683-3382876,3383282-3383351,3383653-3383874	AT1G10310.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F14N23.19, F14N23_19 function encodes a NADPH-dependent pterin aldehyde reductase that accepts pterin aldehyde as well as dihydropterin aldehyde as substrates involved in metabolism and salvage of folate and its derivatives. go_component cytosol|GO:0005829|17550420|IDA go_process folic acid and derivative metabolic process|GO:0006760|17550420|IDA go_function oxidoreductase activity|GO:0016491||ISS go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616|17550420|IDA product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.2); Has 116138 Blast hits to 115933 proteins in 3618 species: Archae - 897; Bacteria - 77623; Metazoa - 6898; Fungi - 5998; Plants - 2845; Viruses - 2; Other Eukaryotes - 21875 (source: NCBI BLink). protein_id AT1G10310.1p transcript_id AT1G10310.1 protein_id AT1G10310.1p transcript_id AT1G10310.1
AT1G10320	chr1:003384164	0.0	C/3384164-3385058,3385183-3385394,3385467-3385541,3385952-3386068,3386374-3386466,3387251-3387409,3387508-3387639,3387724-3387882,3387969-3388373	AT1G10320.2 AT1G10320.2 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
At1g10320	chr1:003384164	0.0	C/3384164-3385058,3385183-3385394,3385467-3385541,3385952-3386068,3386374-3386466,3387251-3387409,3387508-3387666,3387724-3387882,3387969-3388373	AT1G10320.1 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein [TAIR10] CDS gene_syn F14N23.20, F14N23_20 go_component nucleus|GO:0005634||IEA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||IEA go_function zinc ion binding|GO:0008270||IEA go_function RNA binding|GO:0003723||ISS product Zinc finger C-x8-C-x5-C-x3-H type family protein note Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit, putative (TAIR:AT1G27650.1); Has 103377 Blast hits to 43645 proteins in 2110 species: Archae - 258; Bacteria - 11294; Metazoa - 44927; Fungi - 9113; Plants - 5313; Viruses - 581; Other Eukaryotes - 31891 (source: NCBI BLink). protein_id AT1G10320.1p transcript_id AT1G10320.1 protein_id AT1G10320.1p transcript_id AT1G10320.1
At1g10330	chr1:003388747	0.0	W/3388747-3390150	AT1G10330.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F14N23.21, F14N23_21 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 31141 Blast hits to 12595 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 42; Plants - 30558; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink). protein_id AT1G10330.1p transcript_id AT1G10330.1 protein_id AT1G10330.1p transcript_id AT1G10330.1
At1g10340	chr1:003390475	0.0	C/3390475-3391335,3391517-3391956,3392046-3392481	AT1G10340.1 CDS Ankyrin repeat family protein [TAIR10] CDS gene_syn F14N23.22, F14N23_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Ankyrin repeat family protein note Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G24600.4); Has 23228 Blast hits to 12811 proteins in 577 species: Archae - 31; Bacteria - 1612; Metazoa - 12827; Fungi - 1604; Plants - 2793; Viruses - 138; Other Eukaryotes - 4223 (source: NCBI BLink). protein_id AT1G10340.1p transcript_id AT1G10340.1 protein_id AT1G10340.1p transcript_id AT1G10340.1
AT1G10340	chr1:003390475	0.0	C/3390475-3391335,3391517-3391956,3392046-3392481	AT1G10340.3 AT1G10340.3 CDS Ankyrin repeat family protein
At1g10340	chr1:003390475	0.0	C/3390475-3391335,3391517-3391956,3392058-3392481	AT1G10340.2 CDS Ankyrin repeat family protein [TAIR10] CDS gene_syn F14N23.22, F14N23_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Ankyrin repeat family protein note Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G24600.4); Has 20842 Blast hits to 11682 proteins in 536 species: Archae - 22; Bacteria - 1442; Metazoa - 11586; Fungi - 1324; Plants - 2714; Viruses - 98; Other Eukaryotes - 3656 (source: NCBI BLink). protein_id AT1G10340.2p transcript_id AT1G10340.2 protein_id AT1G10340.2p transcript_id AT1G10340.2
At1g10350	chr1:003393595	0.0	C/3393595-3394033,3394250-3394860	AT1G10350.1 CDS DNAJ heat shock family protein [TAIR10] CDS gene_syn F14N23.23, F14N23_23 go_process protein folding|GO:0006457||IEA go_function heat shock protein binding|GO:0031072||IEA go_function unfolded protein binding|GO:0051082||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product DNAJ heat shock family protein note DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT1G59725.1); Has 27964 Blast hits to 27510 proteins in 3469 species: Archae - 176; Bacteria - 10323; Metazoa - 4622; Fungi - 2603; Plants - 2812; Viruses - 18; Other Eukaryotes - 7410 (source: NCBI BLink). protein_id AT1G10350.1p transcript_id AT1G10350.1 protein_id AT1G10350.1p transcript_id AT1G10350.1
At1g10360	chr1:003395738	0.0	C/3395738-3396100,3396486-3396806	AT1G10360.1 CDS glutathione S-transferase TAU 18 [TAIR10] CDS gene_syn ATGSTU18, F14N23.24, F14N23_24, GLUTATHIONE S-TRANSFERASE 29, GST29, GSTU18, glutathione S-transferase TAU 18 gene GSTU18 function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase TAU 18 note glutathione S-transferase TAU 18 (GSTU18); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT1G10370.1); Has 5056 Blast hits to 5041 proteins in 1030 species: Archae - 0; Bacteria - 2429; Metazoa - 208; Fungi - 116; Plants - 1907; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink). protein_id AT1G10360.1p transcript_id AT1G10360.1 protein_id AT1G10360.1p transcript_id AT1G10360.1
At1g10370	chr1:003397274	0.0	C/3397274-3397636,3397953-3398273	AT1G10370.1 CDS Glutathione S-transferase family protein [TAIR10] CDS gene_syn ATGSTU17, EARLY-RESPONSIVE TO DEHYDRATION 9, ERD9, F14N23.26, F14N23_26, GLUTATHIONE S-TRANSFERASE, GLUTATHIONE S-TRANSFERASE 30, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE TAU 17, GST30, GST30B gene ERD9 go_component chloroplast|GO:0009507|18431481|IDA go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_process response to water deprivation|GO:0009414|8075396|IEP go_process response to karrikin|GO:0080167|20351290|IEP go_function glutathione transferase activity|GO:0004364||ISS product Glutathione S-transferase family protein note EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink). protein_id AT1G10370.1p transcript_id AT1G10370.1 protein_id AT1G10370.1p transcript_id AT1G10370.1
At1g10380	chr1:003400706	0.0	W/3400706-3401196,3401481-3401845,3402049-3402110	AT1G10380.1 CDS Putative membrane lipoprotein [TAIR10] CDS gene_syn F14N23.27 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Putative membrane lipoprotein note Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 280 Blast hits to 279 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10380.1p transcript_id AT1G10380.1 protein_id AT1G10380.1p transcript_id AT1G10380.1
AT1G10380	chr1:003400706	0.0	W/3400706-3401196,3401481-3401901	AT1G10380.2 AT1G10380.2 CDS Putative membrane lipoprotein
At1g10385	chr1:003403224	0.0	W/3403224-3403382,3403487-3403584,3403678-3404713,3404801-3405627,3405712-3405856	AT1G10385.1 CDS Vps51/Vps67 family (components of vesicular transport) protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Vps51/Vps67 family (components of vesicular transport) protein note Vps51/Vps67 family (components of vesicular transport) protein; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1); Has 436 Blast hits to 368 proteins in 139 species: Archae - 0; Bacteria - 32; Metazoa - 153; Fungi - 106; Plants - 134; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G10385.1p transcript_id AT1G10385.1 protein_id AT1G10385.1p transcript_id AT1G10385.1
At1g10390	chr1:003407265	0.0	C/3407265-3407944,3408031-3408072,3408415-3408589,3408697-3408813,3409033-3409171,3409289-3409349,3409426-3409513,3409691-3410325,3410425-3410652,3410768-3411415,3411596-3411889,3412027-3412045	AT1G10390.1 CDS Nucleoporin autopeptidase [TAIR10] CDS gene_syn F14N23.29, F14N23_29 go_component nuclear pore|GO:0005643||IEA go_component chloroplast|GO:0009507||IEA go_process transport|GO:0006810||IEA go_function transporter activity|GO:0005215||ISS product Nucleoporin autopeptidase note Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1); Has 77624 Blast hits to 32376 proteins in 1819 species: Archae - 124; Bacteria - 21147; Metazoa - 21029; Fungi - 13994; Plants - 4522; Viruses - 746; Other Eukaryotes - 16062 (source: NCBI BLink). protein_id AT1G10390.1p transcript_id AT1G10390.1 protein_id AT1G10390.1p transcript_id AT1G10390.1
At1g10390	chr1:003407265	0.0	C/3407265-3407944,3408031-3408072,3408415-3408589,3408697-3408813,3409033-3409171,3409289-3409349,3409426-3409513,3409691-3410325,3410425-3410652,3410768-3411415,3411596-3411889,3412027-3412045	AT1G10390.2 CDS Nucleoporin autopeptidase [TAIR10] CDS gene_syn F14N23.29, F14N23_29 go_component nuclear pore|GO:0005643||IEA go_component chloroplast|GO:0009507||IEA go_process transport|GO:0006810||IEA go_function transporter activity|GO:0005215||ISS product Nucleoporin autopeptidase note Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10390.2p transcript_id AT1G10390.2 protein_id AT1G10390.2p transcript_id AT1G10390.2
AT1G10390	chr1:003407265	0.0	C/3407265-3407944,3408031-3408072,3408415-3408589,3408697-3408813,3409033-3409171,3409289-3409349,3409426-3409513,3409691-3410325,3410425-3410652,3410768-3411415,3411596-3411889,3412027-3412045	AT1G10390.3 AT1G10390.3 CDS Nucleoporin autopeptidase
AT1G10395	chr1:003412474	0.0	W/3412474-3412532,3412550-3412742	AT1G10395.1 AT1G10395.1 CDS hypothetical protein
At1g10400	chr1:003414869	0.0	C/3414869-3415508,3415595-3416358	AT1G10400.1 CDS UDP-Glycosyltransferase superfamily protein [TAIR10] CDS gene_syn F14N23.30, F14N23_30 go_component endomembrane system|GO:0012505||IEA go_process metabolic process|GO:0008152||IEA go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-Glycosyltransferase superfamily protein note UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213), Tudor subgroup (InterPro:IPR018351); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G14860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10400.1p transcript_id AT1G10400.1 protein_id AT1G10400.1p transcript_id AT1G10400.1
At1g10410	chr1:003416842	0.0	C/3416842-3416943,3417026-3417148,3417238-3417432,3417520-3417648,3417737-3417899,3417993-3418128,3418216-3418557,3418652-3418732,3419078-3419264	AT1G10410.1 CDS CW14 protein (DUF1336) [TAIR10] CDS gene_syn F14N23.31, F14N23_31 go_component chloroplast|GO:0009507||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA product Protein of unknown function (DUF1336) note Protein of unknown function (DUF1336); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT1G59650.1); Has 292 Blast hits to 292 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 5; Plants - 234; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). protein_id AT1G10410.1p transcript_id AT1G10410.1 protein_id AT1G10410.1p transcript_id AT1G10410.1
AT1G10417	chr1:003424588	0.0	C/3424588-3424647,3424903-3425066,3425307-3425380,3425573-3425640,3425769-3425846,3425922-3425981,3426075-3426211,3426380-3426436,3426547-3426721,3426854-3426964,3427037-3427135,3427215-3427457	AT1G10417.4 AT1G10417.4 CDS RUN/FYVE domain protein
At1g10417	chr1:003424616	0.0	C/3424616-3424641,3424899-3425066,3425307-3425380,3425573-3425640,3425769-3425846,3425922-3425981,3426075-3426211,3426380-3426436,3426547-3426721,3426854-3426964,3427037-3427135,3427215-3427457	AT1G10417.1 CDS RUN/FYVE domain protein [TAIR10] CDS function Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433; Bacteria - 3134; Metazoa - 12646; Fungi - 2033; Plants - 1219; Viruses - 58; Other Eukaryotes - 6483 (source: NCBI BLink). protein_id AT1G10417.1p transcript_id AT1G10417.1 protein_id AT1G10417.1p transcript_id AT1G10417.1
AT1G10417	chr1:003425530	0.0	C/3425530-3425640,3425769-3425846,3425922-3425981,3426075-3426211,3426380-3426436,3426547-3426721,3426854-3426964,3427037-3427135,3427229-3427273,3427386-3427457	AT1G10417.2 AT1G10417.2 CDS RUN/FYVE domain protein
AT1G10417	chr1:003425530	0.0	C/3425530-3425640,3425769-3425846,3425922-3425981,3426075-3426211,3426380-3426436,3426547-3426721,3426854-3426964,3427037-3427135,3427229-3427357	AT1G10417.3 AT1G10417.3 CDS RUN/FYVE domain protein
At1g10419	chr1:003428031	0.0	W/3428031-3428425	AT1G10419.1 [TAIR10] pseudogene
At1g10430	chr1:003428705	0.0	C/3428705-3428878,3428953-3429144,3429329-3429406,3429486-3429594,3429714-3429828,3430185-3430437	AT1G10430.1 CDS protein phosphatase 2A-2 [TAIR10] CDS gene_syn PP2A-2, PROTEIN PHOSPHATASE 2A, T10O24.4, T10O24_4, protein phosphatase 2A-2 gene PP2A-2 function Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4]. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component nucleus|GO:0005634|15469496|IDA go_component cytoplasm|GO:0005737|15469496|IDA go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722|8382968|ISS product protein phosphatase 2A-2 note protein phosphatase 2A-2 (PP2A-2); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-2 (TAIR:AT1G59830.1); Has 6751 Blast hits to 6569 proteins in 471 species: Archae - 80; Bacteria - 183; Metazoa - 2378; Fungi - 1410; Plants - 970; Viruses - 5; Other Eukaryotes - 1725 (source: NCBI BLink). protein_id AT1G10430.1p transcript_id AT1G10430.1 protein_id AT1G10430.1p transcript_id AT1G10430.1
AT1G10430	chr1:003428705	0.0	C/3428705-3428878,3428953-3429144,3429329-3429406,3429486-3429594,3429714-3429828,3430185-3430437	AT1G10430.2 AT1G10430.2 CDS protein phosphatase 2A-2
At1g10440	chr1:003431185	0.0	C/3431185-3431256	AT1G10440.1 [TAIR10] tRNA gene_syn 51200.TRNA-PRO-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Pro (anticodon: AGG) transcript_id AT1G10440.1
AT1G10450	chr1:003432160	0.0	W/3432160-3432386,3432541-3432663,3432779-3432959,3433047-3433145,3433260-3433403,3433619-3433709,3433947-3434170,3434266-3434420,3434672-3434799,3434892-3435146,3435368-3435867,3436058-3436651,3436743-3436831,3436908-3437046,3437151-3437303,3437381-3437541,3437621-3437732,3437833-3437976	AT1G10450.3 AT1G10450.3 CDS paired amphipathic helix Sin3-like protein
At1g10450	chr1:003432313	0.0	W/3432313-3432386,3432541-3432663,3432779-3432959,3433047-3433145,3433260-3433403,3433619-3433709,3433947-3434170,3434266-3434420,3434672-3434799,3434892-3435146,3435368-3435867,3436058-3436651,3436743-3436831,3436908-3437046,3437151-3437303,3437381-3437541,3437621-3437732,3437833-3437979	AT1G10450.1 CDS paired amphipathic helix Sin3-like protein [TAIR10] CDS gene_syn SIN3-like 6, SNL6, T10O24.5, T10O24_5 gene SNL6 function Encodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190). go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS product SIN3-like 6 note SIN3-like 6 (SNL6); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 5 (TAIR:AT1G59890.1); Has 2418 Blast hits to 1013 proteins in 213 species: Archae - 0; Bacteria - 30; Metazoa - 894; Fungi - 728; Plants - 479; Viruses - 2; Other Eukaryotes - 285 (source: NCBI BLink). protein_id AT1G10450.1p transcript_id AT1G10450.1 protein_id AT1G10450.1p transcript_id AT1G10450.1
AT1G10450	chr1:003432313	0.0	W/3432313-3432386,3432541-3432663,3432779-3432959,3433047-3433145,3433260-3433403,3433619-3433709,3433947-3434170,3434266-3434420,3434672-3434799,3434892-3435146,3435368-3435867,3436058-3436651,3436743-3436831,3436908-3437046,3437151-3437303,3437381-3437541,3437621-3437732,3437833-3437979	AT1G10450.2 AT1G10450.2 CDS paired amphipathic helix Sin3-like protein
At1g10455	chr1:003438555	0.0	W/3438555-3439013	AT1G10455.1 CDS B3 DNA-binding domain protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51970.1); Has 75 Blast hits to 73 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10455.1p transcript_id AT1G10455.1 protein_id AT1G10455.1p transcript_id AT1G10455.1
At1g10460	chr1:003439578	0.0	C/3439578-3440231	AT1G10460.1 CDS germin-like protein 7 [TAIR10] CDS gene_syn GLP7, T10O24.6, germin-like protein 7 gene GLP7 function germin-like protein (GLP7) go_component apoplast|GO:0048046||IEA go_function manganese ion binding|GO:0030145||IEA go_function nutrient reservoir activity|GO:0045735||IEA go_process biological_process|GO:0008150||ND product germin-like protein 7 note germin-like protein 7 (GLP7); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G05950.1); Has 1505 Blast hits to 1501 proteins in 101 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 42; Plants - 1425; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G10460.1p transcript_id AT1G10460.1 protein_id AT1G10460.1p transcript_id AT1G10460.1
AT1G10470	chr1:003442624	0.0	C/3442624-3442999,3443099-3443169,3443252-3443329,3443417-3443493,3443582-3443717	AT1G10470.3 AT1G10470.3 CDS response regulator 4
At1g10470	chr1:003442624	0.0	C/3442624-3442999,3443099-3443169,3443252-3443329,3443417-3443493,3443582-3443759	AT1G10470.1 CDS response regulator 4 [TAIR10] CDS gene_syn ARR4, ATRR1, IBC7, INDUCED BY CYTOKININ 7, MEE7, RESPONCE REGULATOR 1, T10O24.8, T10O24_8, maternal effect embryo arrest 7, response regulator 4 gene ARR4 function Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. go_component nucleus|GO:0005634|11691995|IDA go_component nucleus|GO:0005634|18642946|IDA go_component cytoplasm|GO:0005737|11691995|IDA go_component cytoplasm|GO:0005737|18642946|IDA go_process response to stress|GO:0006950|9607306|TAS go_process circadian rhythm|GO:0007623|16326927|IMP go_process response to cytokinin stimulus|GO:0009735|16407152|IEP go_process response to cytokinin stimulus|GO:0009735|9634588|IEP go_process cytokinin mediated signaling pathway|GO:0009736|12068096|TAS go_process cytokinin mediated signaling pathway|GO:0009736|18065689|IMP go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_process red or far-red light signaling pathway|GO:0010017|11691995|IMP go_process response to red light|GO:0010114|14973166|IMP go_process regulation of circadian rhythm|GO:0042752|16326927|IGI go_function two-component response regulator activity|GO:0000156|12068096|ISS go_function two-component response regulator activity|GO:0000156|9607306|TAS go_function two-component response regulator activity|GO:0000156||ISS go_function protein binding|GO:0005515|11691995|IPI go_function transcription regulator activity|GO:0030528|12068096|TAS product response regulator 4 note response regulator 4 (ARR4); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 3 (TAIR:AT1G59940.1); Has 56806 Blast hits to 56102 proteins in 2778 species: Archae - 292; Bacteria - 49762; Metazoa - 41; Fungi - 583; Plants - 1526; Viruses - 7; Other Eukaryotes - 4595 (source: NCBI BLink). protein_id AT1G10470.1p transcript_id AT1G10470.1 protein_id AT1G10470.1p transcript_id AT1G10470.1
AT1G10470	chr1:003442624	0.0	C/3442624-3442999,3443099-3443274	AT1G10470.2 AT1G10470.2 CDS response regulator 4
At1g10480	chr1:003449734	0.0	W/3449734-3450369	AT1G10480.1 CDS zinc finger protein 5 [TAIR10] CDS gene_syn T10O24.9, T10O24_9, ZFP5, zinc finger protein 5 gene ZFP5 function Encodes a zinc finger protein containing only a single zinc finger. go_component intracellular|GO:0005622||IEA go_component chloroplast|GO:0009507||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product zinc finger protein 5 note zinc finger protein 5 (ZFP5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 6 (TAIR:AT1G67030.1); Has 905 Blast hits to 903 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 900; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10480.1p transcript_id AT1G10480.1 protein_id AT1G10480.1p transcript_id AT1G10480.1
At1g10490	chr1:003453589	0.0	W/3453589-3453693,3453782-3453873,3454113-3454284,3454366-3454488,3454568-3454741,3454854-3454964,3455044-3455177,3455263-3455356,3455555-3455653,3455738-3455874,3455997-3456094,3456583-3456706,3456801-3456888,3456969-3457068,3457148-3457200,3457424-3457600,3457684-3457721,3457789-3457882,3457960-3458139,3458233-3458347,3458444-3458513,3458643-3458790,3458988-3459116,3459247-3459372,3459526-3459591,3459686-3459925	AT1G10490.1 CDS GNAT acetyltransferase (DUF699) [TAIR10] CDS gene_syn T10O24.10, T10O24_10 go_component cellular_component|GO:0005575||ND product Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) note CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (TAIR:AT3G57940.1); Has 1351 Blast hits to 1310 proteins in 616 species: Archae - 139; Bacteria - 698; Metazoa - 170; Fungi - 143; Plants - 51; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). protein_id AT1G10490.1p transcript_id AT1G10490.1 protein_id AT1G10490.1p transcript_id AT1G10490.1
AT1G10490	chr1:003453589	0.0	W/3453589-3453693,3453782-3453873,3454113-3454284,3454366-3454488,3454568-3454741,3454854-3454964,3455044-3455177,3455263-3455356,3455555-3455653,3455738-3455874,3455997-3456094,3456583-3456706,3456801-3456888,3456969-3457068,3457148-3457200,3457424-3457600,3457684-3457721,3457789-3457882,3457960-3458139,3458233-3458347,3458444-3458513,3458643-3458790,3458988-3459116,3459247-3459372,3459526-3459591,3459686-3459925	AT1G10490.2 AT1G10490.2 CDS GNAT acetyltransferase (DUF699)
At1g10500	chr1:003460160	0.0	C/3460160-3460302,3460690-3460908,3461160-3461340	AT1G10500.1 CDS chloroplast-localized ISCA-like protein [TAIR10] CDS gene_syn ATCPISCA, CPISCA, T10O24.11, T10O24_11, chloroplast-localized ISCA-like protein gene CPISCA function Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. go_component chloroplast stroma|GO:0009570|15888686|IDA go_process iron-sulfur cluster assembly|GO:0016226|15888686|IDA go_function structural molecule activity|GO:0005198|15888686|IDA product chloroplast-localized ISCA-like protein note chloroplast-localized ISCA-like protein (CPISCA); CONTAINS InterPro DOMAIN/s: FeS cluster insertion, C-terminal, conserved site (InterPro:IPR017870), FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: Iron-sulphur cluster biosynthesis family protein (TAIR:AT5G03905.1); Has 10385 Blast hits to 10384 proteins in 1842 species: Archae - 43; Bacteria - 5944; Metazoa - 237; Fungi - 240; Plants - 172; Viruses - 0; Other Eukaryotes - 3749 (source: NCBI BLink). protein_id AT1G10500.1p transcript_id AT1G10500.1 protein_id AT1G10500.1p transcript_id AT1G10500.1
At1g10510	chr1:003461771	0.0	W/3461771-3461818,3461902-3462175,3462395-3462607,3462743-3462801,3462903-3463040,3463238-3463312,3463420-3463503,3463614-3463675,3463781-3463850,3464037-3464112,3464210-3464340,3464458-3464517,3464609-3464683,3464773-3464877,3464977-3465072,3465168-3465248,3465340-3465441,3465522-3465590	AT1G10510.1 CDS RNI-like superfamily protein [TAIR10] CDS gene_syn T10O24.12, T10O24_12, emb2004, embryo defective 2004 gene emb2004 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component mitochondrion|GO:0005739|16618929|IDA go_component plastid|GO:0009536|16618929|IDA go_process embryo development ending in seed dormancy|GO:0009793||NAS product RNI-like superfamily protein note embryo defective 2004 (emb2004); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RAN GTPase activating protein 1 (TAIR:AT3G63130.2); Has 21704 Blast hits to 6781 proteins in 315 species: Archae - 0; Bacteria - 982; Metazoa - 9646; Fungi - 490; Plants - 1111; Viruses - 0; Other Eukaryotes - 9475 (source: NCBI BLink). protein_id AT1G10510.1p transcript_id AT1G10510.1 protein_id AT1G10510.1p transcript_id AT1G10510.1
At1g10520	chr1:003465964	0.0	W/3465964-3466074,3466197-3466337,3466532-3466849,3466996-3467074,3467154-3467284,3467439-3467501,3467701-3467880,3467973-3468026,3468110-3468198,3468287-3468377,3468568-3468648,3468799-3468866,3468967-3469051,3469150-3469248	AT1G10520.1 CDS DNA polymerase lambda (POLL) [TAIR10] CDS gene_syn T10O24.13, T10O24_13 go_component intracellular|GO:0005622||IEA go_process DNA replication|GO:0006260||IEA go_process DNA repair|GO:0006281||IEA go_function DNA binding|GO:0003677||IEA go_function catalytic activity|GO:0003824||IEA go_function DNA-directed DNA polymerase activity|GO:0003887||IEA go_function nucleotidyltransferase activity|GO:0016779||IEA go_function DNA-directed DNA polymerase activity|GO:0003887||ISS product DNA polymerase lambda (POLL) note DNA polymerase lambda (POLL); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, catalytic activity, nucleotidyltransferase activity; INVOLVED IN: DNA repair, DNA replication; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), DNA-directed DNA polymerase, family X, beta-like (InterPro:IPR002008), DNA-directed DNA polymerase, family X, beta-like, N-terminal (InterPro:IPR010996), DNA polymerase lambda, fingers domain (InterPro:IPR018944), DNA polymerase family X, binding site (InterPro:IPR019843), DNA-directed DNA polymerase X (InterPro:IPR002054), BRCT (InterPro:IPR001357), DNA polymerase X (InterPro:IPR022312); Has 1887 Blast hits to 1879 proteins in 557 species: Archae - 50; Bacteria - 688; Metazoa - 533; Fungi - 209; Plants - 50; Viruses - 7; Other Eukaryotes - 350 (source: NCBI BLink). protein_id AT1G10520.1p transcript_id AT1G10520.1 protein_id AT1G10520.1p transcript_id AT1G10520.1
AT1G10520	chr1:003465964	0.0	W/3465964-3466074,3466197-3466337,3466532-3466849,3466996-3467074,3467154-3467284,3467439-3467501,3467701-3467880,3467973-3468026,3468110-3468198,3468287-3468377,3468568-3468648,3468799-3468924	AT1G10520.2 AT1G10520.2 CDS DNA polymerase lambda (POLL)
At1g10522	chr1:003470009	0.0	W/3470009-3470263,3470340-3470435,3471103-3471291	AT1G10522.1 CDS Serine/Threonine-kinase, putative [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10522.1p transcript_id AT1G10522.1 protein_id AT1G10522.1p transcript_id AT1G10522.1
At1g10522	chr1:003470009	0.0	W/3470009-3470263,3470340-3470435,3471103-3471291	AT1G10522.2 CDS Serine/Threonine-kinase, putative [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10522.2p transcript_id AT1G10522.2 protein_id AT1G10522.2p transcript_id AT1G10522.2
At1g10530	chr1:003471805	0.0	C/3471805-3471912,3472047-3472147,3472235-3472526	AT1G10530.1 CDS D-ribose-binding periplasmic protein, putative [TAIR10] CDS gene_syn T10O24.15, T10O24_15 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60010.1); Has 143 Blast hits to 143 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10530.1p transcript_id AT1G10530.1 protein_id AT1G10530.1p transcript_id AT1G10530.1
At1g10538	chr1:003474515	0.0	W/3474515-3474765	AT1G10538.1 [TAIR10] pseudogene
At1g10540	chr1:003475024	0.0	C/3475024-3475242,3475318-3475478,3475578-3475655,3475737-3475828,3475941-3475999,3476081-3476167,3476258-3476357,3476424-3476614,3476692-3476751,3476821-3476896,3476987-3477087,3477188-3477364,3477447-3477544,3477636-3477756	AT1G10540.1 CDS nucleobase-ascorbate transporter 8 [TAIR10] CDS gene_syn ATNAT8, NAT8, T10O24.16, T10O24_16, nucleobase-ascorbate transporter 8 gene NAT8 go_component membrane|GO:0016020||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_function transmembrane transporter activity|GO:0022857||ISS product nucleobase-ascorbate transporter 8 note nucleobase-ascorbate transporter 8 (NAT8); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 7 (TAIR:AT1G60030.1); Has 9247 Blast hits to 9232 proteins in 1900 species: Archae - 67; Bacteria - 7567; Metazoa - 351; Fungi - 128; Plants - 453; Viruses - 1; Other Eukaryotes - 680 (source: NCBI BLink). protein_id AT1G10540.1p transcript_id AT1G10540.1 protein_id AT1G10540.1p transcript_id AT1G10540.1
AT1G10540	chr1:003475714	0.0	C/3475714-3475828,3475941-3475999,3476081-3476167,3476258-3476357,3476424-3476614,3476692-3476751,3476821-3476896,3476987-3477087,3477188-3477364,3477447-3477544,3477636-3477756	AT1G10540.2 AT1G10540.2 CDS nucleobase-ascorbate transporter 8
At1g10550	chr1:003479257	0.0	C/3479257-3479665,3480157-3480365,3480490-3480590,3480744-3480957	AT1G10550.1 CDS xyloglucan:xyloglucosyl transferase 33 [TAIR10] CDS gene_syn T10O24.17, T10O24_17, XET, XTH33, XYLOGLUCAN ENDOTRANSGLYCOSYLASE, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, xyloglucan:xyloglucosyl transferase 33 gene XTH33 function Encodes a membrane-localized protein that is predicted to function during cell wall modification.Overexpression of XTH33 results in abnormal cell morphology. It's expression is under epigenetic control by ATX1. go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA go_component integral to plasma membrane|GO:0005887|19154201|IDA go_process plant-type cell wall modification involved in multidimensional cell growth|GO:0009831|19154201|IMP go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS product xyloglucan:xyloglucosyl transferase 33 note xyloglucan:xyloglucosyl transferase 33 (XTH33); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2022 Blast hits to 2008 proteins in 287 species: Archae - 0; Bacteria - 257; Metazoa - 0; Fungi - 351; Plants - 1343; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). protein_id AT1G10550.1p transcript_id AT1G10550.1 protein_id AT1G10550.1p transcript_id AT1G10550.1
At1g10560	chr1:003484613	0.0	W/3484613-3486706	AT1G10560.1 CDS plant U-box 18 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 18, ATPUB18, PUB18, T10O24.19, T10O24_19, plant U-box 18 gene PUB18 function Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. go_component ubiquitin ligase complex|GO:0000151||IEA go_process protein ubiquitination|GO:0016567|14657406|IDA go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA product plant U-box 18 note plant U-box 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1); Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0; Bacteria - 22; Metazoa - 252; Fungi - 338; Plants - 2172; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink). protein_id AT1G10560.1p transcript_id AT1G10560.1 protein_id AT1G10560.1p transcript_id AT1G10560.1
At1g10570	chr1:003487639	0.0	W/3487639-3487974,3488329-3488377,3488457-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.1 CDS Cysteine proteinases superfamily protein [TAIR10] CDS gene_syn OTS2, OVERLY TOLERANT TO SALT 2, T10O24.20, T10O24_20, UB-LIKE PROTEASE 1C, ULP1C gene OTS2 function Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation. go_component nucleus|GO:0005634|18849491|IDA go_process proteolysis|GO:0006508||ISS go_process response to salt stress|GO:0009651|18849491|IGI go_process vegetative to reproductive phase transition of meristem|GO:0010228|18849491|IGI go_process protein desumoylation|GO:0016926|16740136|IDA go_function cysteine-type peptidase activity|GO:0008234||ISS go_function SUMO-specific protease activity|GO:0016929|16740136|IDA product Cysteine proteinases superfamily protein note OVERLY TOLERANT TO SALT 2 (OTS2); CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: UB-like protease 1D (TAIR:AT1G60220.1); Has 1265 Blast hits to 1250 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 616; Fungi - 251; Plants - 239; Viruses - 3; Other Eukaryotes - 156 (source: NCBI BLink). protein_id AT1G10570.1p transcript_id AT1G10570.1 protein_id AT1G10570.1p transcript_id AT1G10570.1
At1g10570	chr1:003487639	0.0	W/3487639-3487974,3488332-3488377,3488457-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.2 CDS Cysteine proteinases superfamily protein [TAIR10] CDS gene_syn OTS2, OVERLY TOLERANT TO SALT 2, T10O24.20, T10O24_20, UB-LIKE PROTEASE 1C, ULP1C gene OTS2 function Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation. go_component nucleus|GO:0005634|18849491|IDA go_process proteolysis|GO:0006508||ISS go_process response to salt stress|GO:0009651|18849491|IGI go_process vegetative to reproductive phase transition of meristem|GO:0010228|18849491|IGI go_process protein desumoylation|GO:0016926|16740136|IDA go_function cysteine-type peptidase activity|GO:0008234||ISS go_function SUMO-specific protease activity|GO:0016929|16740136|IDA product Cysteine proteinases superfamily protein note OVERLY TOLERANT TO SALT 2 (OTS2); CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: UB-like protease 1D (TAIR:AT1G60220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10570.2p transcript_id AT1G10570.2 protein_id AT1G10570.2p transcript_id AT1G10570.2
AT1G10570	chr1:003488465	0.0	W/3488465-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.3 AT1G10570.3 CDS Cysteine proteinases superfamily protein
At1g10580	chr1:003491560	0.0	C/3491560-3491566,3491951-3493665	AT1G10580.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn T10O24.21, T10O24_21 go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G54520.1); Has 62674 Blast hits to 30927 proteins in 942 species: Archae - 75; Bacteria - 8018; Metazoa - 23835; Fungi - 13551; Plants - 7464; Viruses - 27; Other Eukaryotes - 9704 (source: NCBI BLink). protein_id AT1G10580.1p transcript_id AT1G10580.1 protein_id AT1G10580.1p transcript_id AT1G10580.1
At1g10585	chr1:003494115	0.0	C/3494115-3494204,3494296-3494613,3494967-3495104	AT1G10585.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10586.1); Has 97 Blast hits to 96 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10585.1p transcript_id AT1G10585.1 protein_id AT1G10585.1p transcript_id AT1G10585.1
AT1G10585	chr1:003494115	0.0	C/3494115-3494204,3494296-3494655	AT1G10585.2 AT1G10585.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g10586	chr1:003497131	0.0	C/3497131-3497199,3497338-3497616	AT1G10586.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10585.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10586.2p transcript_id AT1G10586.2 protein_id AT1G10586.2p transcript_id AT1G10586.2
At1g10586	chr1:003497131	0.0	C/3497131-3497199,3497338-3497655,3499259-3499396	AT1G10586.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_function transcription regulator activity|GO:0030528||IEA product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10585.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10586.1p transcript_id AT1G10586.1 protein_id AT1G10586.1p transcript_id AT1G10586.1
At1g10588	chr1:003501276	0.0	W/3501276-3501360,3501468-3501655	AT1G10588.1 CDS Gibberellin-regulated family protein [TAIR10] CDS function Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein go_component endomembrane system|GO:0012505||IEA product Gibberellin-regulated family protein note Gibberellin-regulated family protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G39540.1); Has 477 Blast hits to 477 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 477; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10588.1p transcript_id AT1G10588.1 protein_id AT1G10588.1p transcript_id AT1G10588.1
At1g10588	chr1:003501276	0.0	W/3501276-3501360,3501471-3501655	AT1G10588.2 CDS Gibberellin-regulated family protein [TAIR10] CDS function Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein go_component endomembrane system|GO:0012505||IEA product Gibberellin-regulated family protein note Gibberellin-regulated family protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G39540.1); Has 478 Blast hits to 478 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 478; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10588.2p transcript_id AT1G10588.2 protein_id AT1G10588.2p transcript_id AT1G10588.2
At1g10590	chr1:003502324	0.0	C/3502324-3502514,3502763-3502991	AT1G10590.1 CDS Nucleic acid-binding, OB-fold-like protein [TAIR10] CDS gene_syn F20B24.1 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process biological_process|GO:0008150||ND product Nucleic acid-binding, OB-fold-like protein note Nucleic acid-binding, OB-fold-like protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G23750.1); Has 250 Blast hits to 250 proteins in 60 species: Archae - 55; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G10590.1p transcript_id AT1G10590.1 protein_id AT1G10590.1p transcript_id AT1G10590.1
At1g10590	chr1:003502324	0.0	C/3502324-3502514,3502763-3502991	AT1G10590.2 CDS Nucleic acid-binding, OB-fold-like protein [TAIR10] CDS gene_syn F20B24.1 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process biological_process|GO:0008150||ND product Nucleic acid-binding, OB-fold-like protein note Nucleic acid-binding, OB-fold-like protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G23750.1); Has 250 Blast hits to 250 proteins in 60 species: Archae - 55; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G10590.2p transcript_id AT1G10590.2 protein_id AT1G10590.2p transcript_id AT1G10590.2
At1g10590	chr1:003502324	0.0	C/3502324-3502514,3502763-3503033	AT1G10590.3 CDS Nucleic acid-binding, OB-fold-like protein [TAIR10] CDS gene_syn F20B24.1 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process biological_process|GO:0008150||ND product Nucleic acid-binding, OB-fold-like protein note Nucleic acid-binding, OB-fold-like protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G23750.1); Has 250 Blast hits to 250 proteins in 60 species: Archae - 55; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G10590.3p transcript_id AT1G10590.3 protein_id AT1G10590.3p transcript_id AT1G10590.3
At1g10600	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.1 CDS associated molecule with the SH3 domain of STAM 2 [TAIR10] CDS gene_syn AMSH2, F20B24.2, associated molecule with the SH3 domain of STAM 2 gene AMSH2 go_component chloroplast|GO:0009507||IEA go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS go_function molecular_function|GO:0003674||ND product associated molecule with the SH3 domain of STAM 2 note associated molecule with the SH3 domain of STAM 2 (AMSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 1093 Blast hits to 1091 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 313; Plants - 274; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). protein_id AT1G10600.1p transcript_id AT1G10600.1 protein_id AT1G10600.1p transcript_id AT1G10600.1
AT1G10600	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.4 AT1G10600.4 CDS associated molecule with the SH3 domain of STAM 2
At1g10600	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505019-3505190	AT1G10600.3 CDS associated molecule with the SH3 domain of STAM 2 [TAIR10] CDS gene_syn AMSH2, F20B24.2, associated molecule with the SH3 domain of STAM 2 gene AMSH2 go_component chloroplast|GO:0009507||IEA go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS go_function molecular_function|GO:0003674||ND product associated molecule with the SH3 domain of STAM 2 note associated molecule with the SH3 domain of STAM 2 (AMSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 1117 Blast hits to 1115 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 409; Fungi - 306; Plants - 280; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). protein_id AT1G10600.3p transcript_id AT1G10600.3 protein_id AT1G10600.3p transcript_id AT1G10600.3
At1g10600	chr1:003503907	0.0	W/3503907-3503917,3504024-3504113,3504359-3504392,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.2 CDS associated molecule with the SH3 domain of STAM 2 [TAIR10] CDS gene_syn AMSH2, F20B24.2, associated molecule with the SH3 domain of STAM 2 gene AMSH2 go_component mitochondrion|GO:0005739||IEA go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS go_function molecular_function|GO:0003674||ND product associated molecule with the SH3 domain of STAM 2 note associated molecule with the SH3 domain of STAM 2 (AMSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10600.2p transcript_id AT1G10600.2 protein_id AT1G10600.2p transcript_id AT1G10600.2
At1g10610	chr1:003506463	0.0	W/3506463-3506572,3507032-3507229,3507309-3507372,3507450-3507518,3507599-3508033,3508137-3508337,3508416-3508592,3508681-3508752	AT1G10610.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F20B24.5 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G16910.1); Has 1439 Blast hits to 1421 proteins in 116 species: Archae - 0; Bacteria - 21; Metazoa - 63; Fungi - 6; Plants - 1338; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G10610.1p transcript_id AT1G10610.1 protein_id AT1G10610.1p transcript_id AT1G10610.1
AT1G10610	chr1:003506537	0.0	W/3506537-3506556,3507032-3507229,3507309-3507372,3507450-3507518,3507599-3508033,3508137-3508337,3508416-3508592,3508681-3508752	AT1G10610.2 AT1G10610.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
AT1G10610	chr1:003507213	0.0	W/3507213-3507229,3507309-3507372,3507450-3507518,3507599-3508033,3508137-3508337,3508416-3508592,3508681-3508752	AT1G10610.3 AT1G10610.3 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g10620	chr1:003509001	0.0	C/3509001-3509243,3509341-3509502,3509599-3509746,3509833-3509909,3510034-3510104,3510231-3510317,3510479-3510919,3511048-3511975	AT1G10620.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F20B24.6, F20B24_6 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G23540.1); Has 259832 Blast hits to 189065 proteins in 5658 species: Archae - 530; Bacteria - 41689; Metazoa - 96109; Fungi - 30957; Plants - 48835; Viruses - 4506; Other Eukaryotes - 37206 (source: NCBI BLink). protein_id AT1G10620.1p transcript_id AT1G10620.1 protein_id AT1G10620.1p transcript_id AT1G10620.1
At1g10630	chr1:003513189	0.0	C/3513189-3513194,3513351-3513432,3513525-3513643,3513730-3513849,3513935-3514005,3514083-3514230	AT1G10630.1 CDS ADP-ribosylation factor A1F [TAIR10] CDS gene_syn ADP-ribosylation factor A1F, ARFA1F, ATARFA1F, F20B24.7, F20B24_7 gene ARFA1F function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. go_component plasma membrane|GO:0005886|15060130|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_function copper ion binding|GO:0005507|16526091|IDA go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_function GTP binding|GO:0005525|15723828|ISS go_function GTP binding|GO:0005525|15723828|TAS go_function phospholipase activator activity|GO:0016004|15723828|TAS product ADP-ribosylation factor A1F note ADP-ribosylation factor A1F (ARFA1F); FUNCTIONS IN: phospholipase activator activity, GTP binding, copper ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT2G47170.1); Has 15022 Blast hits to 15003 proteins in 509 species: Archae - 14; Bacteria - 51; Metazoa - 7710; Fungi - 1942; Plants - 2027; Viruses - 3; Other Eukaryotes - 3275 (source: NCBI BLink). protein_id AT1G10630.1p transcript_id AT1G10630.1 protein_id AT1G10630.1p transcript_id AT1G10630.1
AT1G10630	chr1:003513189	0.0	C/3513189-3513194,3513351-3513432,3513525-3513643,3513730-3513849,3513935-3514005,3514083-3514230	AT1G10630.2 AT1G10630.2 CDS ADP-ribosylation factor A1F
At1g10640	chr1:003515478	0.0	C/3515478-3516061,3516140-3516347,3516417-3516461,3516550-3516771,3516848-3516979,3517400-3517807	AT1G10640.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn F20B24.8, F20B24_8 go_process carbohydrate metabolic process|GO:0005975||IEA go_function polygalacturonase activity|GO:0004650||IEA go_component cellular_component|GO:0005575||ND go_process carbohydrate metabolic process|GO:0005975||ISS go_function polygalacturonase activity|GO:0004650||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4327 Blast hits to 4306 proteins in 507 species: Archae - 6; Bacteria - 1323; Metazoa - 14; Fungi - 1302; Plants - 1545; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink). protein_id AT1G10640.1p transcript_id AT1G10640.1 protein_id AT1G10640.1p transcript_id AT1G10640.1
At1g10650	chr1:003524122	0.0	C/3524122-3524661,3524749-3525060	AT1G10650.2 CDS SBP (S-ribonuclease binding protein) family protein [TAIR10] CDS gene_syn F20B24.9, F20B24_9 go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product SBP (S-ribonuclease binding protein) family protein note SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10650.2p transcript_id AT1G10650.2 protein_id AT1G10650.2p transcript_id AT1G10650.2
At1g10650	chr1:003524122	0.0	C/3524122-3524661,3524749-3525119,3525210-3525318	AT1G10650.1 CDS SBP (S-ribonuclease binding protein) family protein [TAIR10] CDS gene_syn F20B24.9, F20B24_9 go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product SBP (S-ribonuclease binding protein) family protein note SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 1212 Blast hits to 1212 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 524; Fungi - 0; Plants - 416; Viruses - 105; Other Eukaryotes - 165 (source: NCBI BLink). protein_id AT1G10650.1p transcript_id AT1G10650.1 protein_id AT1G10650.1p transcript_id AT1G10650.1
At1g10652	chr1:003527709	0.0	W/3527709-3527831	AT1G10652.1 CDS hypothetical protein [TAIR10] CDS go_component mitochondrion|GO:0005739||IEA product unknown protein note unknown protein; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10652.1p transcript_id AT1G10652.1 protein_id AT1G10652.1p transcript_id AT1G10652.1
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531193-3531342,3531479-3531522	AT1G10657.1 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein 1589 of unknown function note Plant protein 1589 of unknown function; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1); Has 115 Blast hits to 115 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10657.1p transcript_id AT1G10657.1 protein_id AT1G10657.1p transcript_id AT1G10657.1
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531193-3531383	AT1G10657.4 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein 1589 of unknown function note Plant protein 1589 of unknown function; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10657.4p transcript_id AT1G10657.4 protein_id AT1G10657.4p transcript_id AT1G10657.4
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531342,3531479-3531522	AT1G10657.2 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein 1589 of unknown function note Plant protein 1589 of unknown function; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1); Has 197 Blast hits to 197 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G10657.2p transcript_id AT1G10657.2 protein_id AT1G10657.2p transcript_id AT1G10657.2
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531383	AT1G10657.3 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein 1589 of unknown function note Plant protein 1589 of unknown function; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10657.3p transcript_id AT1G10657.3 protein_id AT1G10657.3p transcript_id AT1G10657.3
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F20B24.10, F20B24_10 go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 155 Blast hits to 154 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G10660.1p transcript_id AT1G10660.1 protein_id AT1G10660.1p transcript_id AT1G10660.1
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F20B24.10, F20B24_10 go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10660.2p transcript_id AT1G10660.2 protein_id AT1G10660.2p transcript_id AT1G10660.2
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.3 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F20B24.10, F20B24_10 go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10660.3p transcript_id AT1G10660.3 protein_id AT1G10660.3p transcript_id AT1G10660.3
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.4 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F20B24.10, F20B24_10 go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10660.4p transcript_id AT1G10660.4 protein_id AT1G10660.4p transcript_id AT1G10660.4
At1g10670	chr1:003535787	0.0	W/3535787-3535885,3535961-3536020,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.3 CDS ATP-citrate lyase A-1 [TAIR10] CDS gene_syn ACLA-1, ATP-citrate lyase A-1, F20B24.11, F20B24_11 gene ACLA-1 function One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress. go_component cytosol|GO:0005829|12376641|IDA go_component citrate lyase complex|GO:0009346|12376641|IDA go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS go_process fatty acid biosynthetic process|GO:0006633|15608338|IMP go_process aging|GO:0007568|15608338|IMP go_process positive regulation of flower development|GO:0009911|15608338|IMP go_process wax biosynthetic process|GO:0010025|15608338|IMP go_process chlorophyll biosynthetic process|GO:0015995|15608338|IMP go_process carotenoid biosynthetic process|GO:0016117|15608338|IMP go_process starch biosynthetic process|GO:0019252|15608338|IMP go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15608338|IMP go_process positive regulation of cell size|GO:0045793|15608338|IMP go_process regulation of embryonic development|GO:0045995|15608338|IMP go_process leaf development|GO:0048366|15608338|IMP go_function ATP citrate synthase activity|GO:0003878|12376641|IDA product ATP-citrate lyase A-1 note ATP-citrate lyase A-1 (ACLA-1); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1). protein_id AT1G10670.3p transcript_id AT1G10670.3 protein_id AT1G10670.3p transcript_id AT1G10670.3
At1g10670	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.1 CDS ATP-citrate lyase A-1 [TAIR10] CDS gene_syn ACLA-1, ATP-citrate lyase A-1, F20B24.11, F20B24_11 gene ACLA-1 function One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress. go_component cytosol|GO:0005829|12376641|IDA go_component citrate lyase complex|GO:0009346|12376641|IDA go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS go_process fatty acid biosynthetic process|GO:0006633|15608338|IMP go_process aging|GO:0007568|15608338|IMP go_process positive regulation of flower development|GO:0009911|15608338|IMP go_process wax biosynthetic process|GO:0010025|15608338|IMP go_process chlorophyll biosynthetic process|GO:0015995|15608338|IMP go_process carotenoid biosynthetic process|GO:0016117|15608338|IMP go_process starch biosynthetic process|GO:0019252|15608338|IMP go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15608338|IMP go_process positive regulation of cell size|GO:0045793|15608338|IMP go_process regulation of embryonic development|GO:0045995|15608338|IMP go_process leaf development|GO:0048366|15608338|IMP go_function ATP citrate synthase activity|GO:0003878|12376641|IDA product ATP-citrate lyase A-1 note ATP-citrate lyase A-1 (ACLA-1); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1); Has 5465 Blast hits to 5464 proteins in 1555 species: Archae - 120; Bacteria - 3046; Metazoa - 362; Fungi - 200; Plants - 107; Viruses - 0; Other Eukaryotes - 1630 (source: NCBI BLink). protein_id AT1G10670.1p transcript_id AT1G10670.1 protein_id AT1G10670.1p transcript_id AT1G10670.1
At1g10670	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.2 CDS ATP-citrate lyase A-1 [TAIR10] CDS gene_syn ACLA-1, ATP-citrate lyase A-1, F20B24.11, F20B24_11 gene ACLA-1 function One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress. go_component cytosol|GO:0005829|12376641|IDA go_component citrate lyase complex|GO:0009346|12376641|IDA go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS go_process fatty acid biosynthetic process|GO:0006633|15608338|IMP go_process aging|GO:0007568|15608338|IMP go_process positive regulation of flower development|GO:0009911|15608338|IMP go_process wax biosynthetic process|GO:0010025|15608338|IMP go_process chlorophyll biosynthetic process|GO:0015995|15608338|IMP go_process carotenoid biosynthetic process|GO:0016117|15608338|IMP go_process starch biosynthetic process|GO:0019252|15608338|IMP go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15608338|IMP go_process positive regulation of cell size|GO:0045793|15608338|IMP go_process regulation of embryonic development|GO:0045995|15608338|IMP go_process leaf development|GO:0048366|15608338|IMP go_function ATP citrate synthase activity|GO:0003878|12376641|IDA product ATP-citrate lyase A-1 note ATP-citrate lyase A-1 (ACLA-1); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1); Has 5465 Blast hits to 5464 proteins in 1555 species: Archae - 120; Bacteria - 3046; Metazoa - 362; Fungi - 200; Plants - 107; Viruses - 0; Other Eukaryotes - 1630 (source: NCBI BLink). protein_id AT1G10670.2p transcript_id AT1G10670.2 protein_id AT1G10670.2p transcript_id AT1G10670.2
At1g10670	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.4 CDS ATP-citrate lyase A-1 [TAIR10] CDS gene_syn ACLA-1, ATP-citrate lyase A-1, F20B24.11, F20B24_11 gene ACLA-1 function One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress. go_component cytosol|GO:0005829|12376641|IDA go_component citrate lyase complex|GO:0009346|12376641|IDA go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS go_process fatty acid biosynthetic process|GO:0006633|15608338|IMP go_process aging|GO:0007568|15608338|IMP go_process positive regulation of flower development|GO:0009911|15608338|IMP go_process wax biosynthetic process|GO:0010025|15608338|IMP go_process chlorophyll biosynthetic process|GO:0015995|15608338|IMP go_process carotenoid biosynthetic process|GO:0016117|15608338|IMP go_process starch biosynthetic process|GO:0019252|15608338|IMP go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15608338|IMP go_process positive regulation of cell size|GO:0045793|15608338|IMP go_process regulation of embryonic development|GO:0045995|15608338|IMP go_process leaf development|GO:0048366|15608338|IMP go_function ATP citrate synthase activity|GO:0003878|12376641|IDA product ATP-citrate lyase A-1 note ATP-citrate lyase A-1 (ACLA-1); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1). protein_id AT1G10670.4p transcript_id AT1G10670.4 protein_id AT1G10670.4p transcript_id AT1G10670.4
At1g10680	chr1:003538470	0.0	C/3538470-3538679,3538801-3539141,3539280-3539692,3539772-3540019,3540107-3540348,3540447-3540832,3540925-3541292,3541374-3541902,3541989-3542248,3542337-3542537,3542745-3542920,3543003-3543057,3543528-3543782	AT1G10680.1 CDS P-glycoprotein 10 [TAIR10] CDS gene_syn F20B24.12, F20B24_12, P-glycoprotein 10, PGP10 gene PGP10 go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product P-glycoprotein 10 note P-glycoprotein 10 (PGP10); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 2 (TAIR:AT4G25960.1); Has 851951 Blast hits to 394154 proteins in 4179 species: Archae - 14690; Bacteria - 665527; Metazoa - 18433; Fungi - 12853; Plants - 9433; Viruses - 32; Other Eukaryotes - 130983 (source: NCBI BLink). protein_id AT1G10680.1p transcript_id AT1G10680.1 protein_id AT1G10680.1p transcript_id AT1G10680.1
AT1G10680	chr1:003538655	0.0	C/3538655-3538723,3538801-3539141,3539280-3539692,3539772-3540019,3540107-3540348,3540447-3540832,3540925-3541292,3541374-3541902,3541989-3542248,3542337-3542537,3542745-3542920,3543003-3543057,3543528-3543782	AT1G10680.2 AT1G10680.2 CDS P-glycoprotein 10
At1g10682	chr1:003544991	0.0	C/3544991-3545471	AT1G10682.1 [TAIR10] ncRNA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G10682.1
At1g10690	chr1:003550236	0.0	C/3550236-3550568	AT1G10690.1 CDS cyclin-dependent kinase inhibitor, putative [TAIR10] CDS gene_syn T16B5.17, T16B5_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10690.1p transcript_id AT1G10690.1 protein_id AT1G10690.1p transcript_id AT1G10690.1
AT1G10700	chr1:003554157	0.0	W/3554157-3554548,3554821-3555136,3555227-3555322,3555421-3555489,3555574-3555594	AT1G10700.2 AT1G10700.2 CDS phosphoribosyl pyrophosphate (PRPP) synthase 3
At1g10700	chr1:003554157	0.0	W/3554157-3554548,3554821-3555136,3555227-3555322,3555421-3555489,3555722-3555850,3555934-3556033,3556141-3556274	AT1G10700.1 CDS phosphoribosyl pyrophosphate (PRPP) synthase 3 [TAIR10] CDS gene_syn PRS3, T16B5.16, phosphoribosyl pyrophosphate (PRPP) synthase 3 gene PRS3 function Encodes a P-independent phosphoribosyl pyrophosphate (PRPP) synthase. go_component chloroplast|GO:0009507||IEA go_process nucleoside metabolic process|GO:0009116||IEA go_process nucleotide biosynthetic process|GO:0009165||IEA go_function magnesium ion binding|GO:0000287||IEA go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA go_process nucleotide biosynthetic process|GO:0009165||ISS go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS product phosphoribosyl pyrophosphate (PRPP) synthase 3 note phosphoribosyl pyrophosphate (PRPP) synthase 3 (PRS3); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: nucleotide biosynthetic process, nucleoside metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946); BEST Arabidopsis thaliana protein match is: Phosphoribosyltransferase family protein (TAIR:AT2G42910.1); Has 9536 Blast hits to 9535 proteins in 2732 species: Archae - 207; Bacteria - 5887; Metazoa - 527; Fungi - 344; Plants - 201; Viruses - 8; Other Eukaryotes - 2362 (source: NCBI BLink). protein_id AT1G10700.1p transcript_id AT1G10700.1 protein_id AT1G10700.1p transcript_id AT1G10700.1
At1g10705	chr1:003557114	0.0	W/3557114-3557177,3557280-3557457	AT1G10705.1 [TAIR10] pseudogene
At1g10710	chr1:003558423	0.0	W/3558423-3558695,3558864-3558980,3559150-3559215,3559353-3559415,3559654-3559700,3559781-3559965,3560057-3560109,3560197-3560224,3560349-3560407	AT1G10710.2 CDS poor homologous synapsis 1 [TAIR10] CDS gene_syn PHS1, POOR HOMOLOGOUS SYNAPSIS 1, T16B5.15 gene PHS1 function Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene. PHS1 regulates recombination and pairing of homologous chromosomes during meiotic prophase by controlling transport of RAD50 from cytoplasm to the nucleus. go_component cytoplasm|GO:0005737|19918061|IDA go_process leptotene|GO:0000237|19918061|IDA go_process zygotene|GO:0000238|19918061|IDA go_process synapsis|GO:0007129|19918061|IMP go_function molecular_function|GO:0003674||ND product poor homologous synapsis 1 note POOR HOMOLOGOUS SYNAPSIS 1 (PHS1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: zygotene, synapsis, leptotene; LOCATED IN: cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 27 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10710.2p transcript_id AT1G10710.2 protein_id AT1G10710.2p transcript_id AT1G10710.2
At1g10710	chr1:003558423	0.0	W/3558423-3558695,3558864-3558980,3559150-3559215,3559353-3559462,3559542-3559700,3559781-3559965,3560057-3560109,3560197-3560224,3560349-3560407	AT1G10710.1 CDS poor homologous synapsis 1 [TAIR10] CDS gene_syn PHS1, POOR HOMOLOGOUS SYNAPSIS 1, T16B5.15 gene PHS1 function Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene. PHS1 regulates recombination and pairing of homologous chromosomes during meiotic prophase by controlling transport of RAD50 from cytoplasm to the nucleus. go_component cytoplasm|GO:0005737|19918061|IDA go_process leptotene|GO:0000237|19918061|IDA go_process zygotene|GO:0000238|19918061|IDA go_process synapsis|GO:0007129|19918061|IMP go_function molecular_function|GO:0003674||ND product poor homologous synapsis 1 note POOR HOMOLOGOUS SYNAPSIS 1 (PHS1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 43 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10710.1p transcript_id AT1G10710.1 protein_id AT1G10710.1p transcript_id AT1G10710.1
AT1G10715	chr1:003561149	0.0	W/3561149-3561209,3561296-3561492	AT1G10715.1 AT1G10715.1 CDS EMBRYO SURROUNDING FACTOR-like protein
At1g10717	chr1:003562180	0.0	W/3562180-3562243,3562346-3562554	AT1G10717.1 CDS EMBRYO SURROUNDING FACTOR-like protein [TAIR10] CDS function Encodes a Maternally expressed gene (MEG) family protein go_component endomembrane system|GO:0012505||IEA product unknown protein note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Maternally expressed gene (MEG) family protein (TAIR:AT1G27135.1); Has 38 Blast hits to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10717.1p transcript_id AT1G10717.1 protein_id AT1G10717.1p transcript_id AT1G10717.1
At1g10720	chr1:003562964	0.0	W/3562964-3563579,3563680-3563867,3563961-3564446	AT1G10720.1 CDS BSD domain-containing protein [TAIR10] CDS gene_syn T16B5.14, T16B5_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product BSD domain-containing protein note BSD domain-containing protein; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 1569 Blast hits to 1461 proteins in 180 species: Archae - 0; Bacteria - 14; Metazoa - 740; Fungi - 179; Plants - 264; Viruses - 21; Other Eukaryotes - 351 (source: NCBI BLink). protein_id AT1G10720.1p transcript_id AT1G10720.1 protein_id AT1G10720.1p transcript_id AT1G10720.1
At1g10730	chr1:003565463	0.0	W/3565463-3565591,3565732-3565878,3565985-3566047,3566158-3566334,3566409-3566512,3566605-3566712,3566837-3566933,3567028-3567125,3567226-3567367,3567443-3567565,3567681-3567779	AT1G10730.1 CDS Clathrin adaptor complexes medium subunit family protein [TAIR10] CDS gene_syn T16B5.13, T16B5_13 go_component clathrin adaptor complex|GO:0030131||IEA go_process transport|GO:0006810||IEA go_process intracellular protein transport|GO:0006886||IEA go_process vesicle-mediated transport|GO:0016192||IEA go_component clathrin vesicle coat|GO:0030125||ISS go_process intracellular protein transport|GO:0006886||ISS product Clathrin adaptor complexes medium subunit family protein note Clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 2200 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 504; Plants - 215; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink). protein_id AT1G10730.1p transcript_id AT1G10730.1 protein_id AT1G10730.1p transcript_id AT1G10730.1
At1g10740	chr1:003568343	0.0	C/3568343-3568547,3568616-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T16B5.12, T16B5_12 go_component endomembrane system|GO:0012505||IEA go_process glycerol biosynthetic process|GO:0006114||IEA product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; INVOLVED IN: glycerol biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G23330.1); Has 782 Blast hits to 782 proteins in 229 species: Archae - 0; Bacteria - 631; Metazoa - 3; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). protein_id AT1G10740.1p transcript_id AT1G10740.1 protein_id AT1G10740.1p transcript_id AT1G10740.1
At1g10740	chr1:003568343	0.0	C/3568343-3568547,3568616-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.3 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T16B5.12, T16B5_12 go_component endomembrane system|GO:0012505||IEA product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G23330.1). protein_id AT1G10740.3p transcript_id AT1G10740.3 protein_id AT1G10740.3p transcript_id AT1G10740.3
At1g10740	chr1:003568343	0.0	C/3568343-3568547,3568616-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.4 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T16B5.12, T16B5_12 go_component endomembrane system|GO:0012505||IEA product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G23330.1). protein_id AT1G10740.4p transcript_id AT1G10740.4 protein_id AT1G10740.4p transcript_id AT1G10740.4
At1g10740	chr1:003568612	0.0	C/3568612-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.2 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T16B5.12, T16B5_12 go_component endomembrane system|GO:0012505||IEA product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G23330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10740.2p transcript_id AT1G10740.2 protein_id AT1G10740.2p transcript_id AT1G10740.2
At1g10745	chr1:003572710	0.0	W/3572710-3572770,3572879-3573066	AT1G10745.1 CDS Maternally expressed gene (MEG) family protein [TAIR10] CDS function Encodes a Maternally expressed gene (MEG) family protein go_component endomembrane system|GO:0012505||IEA product Maternally expressed gene (MEG) family protein note Maternally expressed gene (MEG) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Maternally expressed gene (MEG) family protein (TAIR:AT1G10747.1); Has 23 Blast hits to 23 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10745.1p transcript_id AT1G10745.1 protein_id AT1G10745.1p transcript_id AT1G10745.1
At1g10747	chr1:003574312	0.0	W/3574312-3574375,3574449-3574636	AT1G10747.1 CDS Maternally expressed gene (MEG) family protein [TAIR10] CDS function Encodes a Maternally expressed gene (MEG) family protein go_component endomembrane system|GO:0012505||IEA product Maternally expressed gene (MEG) family protein note Maternally expressed gene (MEG) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 43 Blast hits to 43 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10747.1p transcript_id AT1G10747.1 protein_id AT1G10747.1p transcript_id AT1G10747.1
At1g10750	chr1:003574986	0.0	C/3574986-3575363,3576020-3576166,3576289-3576342,3576445-3576609,3577327-3577536,3577625-3577711,3577948-3578310	AT1G10750.1 CDS carboxyl-terminal peptidase, putative (DUF239) [TAIR10] CDS gene_syn T16B5.11, T16B5_11 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA product Protein of Unknown Function (DUF239) note Protein of Unknown Function (DUF239); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 789 Blast hits to 744 proteins in 31 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 764; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10750.1p transcript_id AT1G10750.1 protein_id AT1G10750.1p transcript_id AT1G10750.1
AT1G10750	chr1:003575315	0.0	C/3575315-3575363,3576020-3576166,3576289-3576332,3576445-3576609,3577327-3577536,3577625-3577711,3577948-3578310	AT1G10750.2 AT1G10750.2 CDS carboxyl-terminal peptidase, putative (DUF239)
At1g10760	chr1:003581210	0.0	C/3581210-3581414,3581516-3581631,3581736-3581828,3581907-3582080,3582158-3582256,3582602-3582712,3583032-3583157,3583338-3583470,3583624-3583727,3583812-3584025,3584145-3584251,3584348-3584524,3584752-3584835,3584978-3585130,3585228-3585287,3585382-3585444,3585523-3585585,3585724-3585909,3585982-3586071,3586343-3586505,3586687-3586821,3587072-3587160,3587252-3587392,3587489-3587584,3587702-3587809,3587915-3588310,3588730-3588883,3588983-3589074,3589193-3589271,3589365-3589465,3589553-3589594,3589798-3590043	AT1G10760.1 CDS Pyruvate phosphate dikinase, PEP/pyruvate binding domain [TAIR10] CDS gene_syn GWD, GWD1, SEX1, SOP, SOP1, STARCH EXCESS 1, T16B5.10, T16B5_10 gene SEX1 function Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_process starch catabolic process|GO:0005983|11487701|IMP go_process starch catabolic process|GO:0005983|19776162|IMP go_process circadian rhythm|GO:0007623|16297066|IEP go_process response to symbiotic fungus|GO:0009610|15710607|IEP go_process response to symbiotic fungus|GO:0009610|17397506|IEP go_process cold acclimation|GO:0009631|15894744|IMP go_process response to trehalose stimulus|GO:0010353|17031512|IEP go_function protein binding|GO:0005515|19452453|IPI go_function alpha-glucan, water dikinase activity|GO:0050521|11487701|IMP go_function alpha-glucan, water dikinase activity|GO:0050521|15894744|TAS go_function alpha-glucan, water dikinase activity|GO:0050521|16914145|IMP product Pyruvate phosphate dikinase, PEP/pyruvate binding domain note STARCH EXCESS 1 (SEX1); FUNCTIONS IN: protein binding, alpha-glucan, water dikinase activity; INVOLVED IN: cold acclimation, response to symbiotic fungus, response to trehalose stimulus, circadian rhythm, starch catabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192); BEST Arabidopsis thaliana protein match is: phosphoglucan, water dikinase (TAIR:AT4G24450.1); Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196; Bacteria - 1989; Metazoa - 24; Fungi - 8; Plants - 221; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). protein_id AT1G10760.1p transcript_id AT1G10760.1 protein_id AT1G10760.1p transcript_id AT1G10760.1
AT1G10760	chr1:003581210	0.0	C/3581210-3581414,3581516-3581631,3581736-3581828,3581907-3582080,3582158-3582256,3582602-3582712,3583032-3583157,3583338-3583470,3583624-3583727,3583812-3584025,3584145-3584251,3584348-3584524,3584752-3584835,3584978-3585130,3585228-3585287,3585382-3585444,3585523-3585585,3585724-3585909,3585982-3586071,3586343-3586505,3586687-3586821,3587072-3587160,3587252-3587392,3587489-3587584,3587702-3587809,3587915-3588310,3588730-3588883,3588983-3589074,3589193-3589271,3589365-3589465,3589553-3589594,3589798-3590043	AT1G10760.2 AT1G10760.2 CDS Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AT1G10760	chr1:003581210	0.0	C/3581210-3581414,3581516-3581631,3581736-3581828,3581907-3582080,3582158-3582256,3582602-3582712,3583032-3583157,3583338-3583470,3583624-3583727,3583812-3584025,3584145-3584251,3584348-3584524,3584752-3584835,3584978-3585130,3585228-3585287,3585382-3585444,3585523-3585585,3585724-3585909,3585982-3586071,3586343-3586505,3586687-3586821,3587072-3587160,3587252-3587392,3587489-3587584,3587702-3587809,3587915-3588310,3588730-3588883,3588983-3589074,3589193-3589271,3589365-3589465,3589553-3589594,3589798-3590043	AT1G10760.3 AT1G10760.3 CDS Pyruvate phosphate dikinase, PEP/pyruvate binding domain
At1g10770	chr1:003591859	0.0	C/3591859-3592362	AT1G10770.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily protein [TAIR10] CDS gene_syn T16B5.9 function Encodes a putative pectin methylesterase/invertase inhibitor. Anti-sense reduction of this gene's transcript results in pollen tube growth retardation and then partial male sterility and reduced seed set. go_component endomembrane system|GO:0012505||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_process pollen tube growth|GO:0009860|20229192|IMP go_function pectinesterase inhibitor activity|GO:0046910||ISS product Plant invertase/pectin methylesterase inhibitor superfamily protein note Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G60760.1); Has 183 Blast hits to 183 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10770.1p transcript_id AT1G10770.1 protein_id AT1G10770.1p transcript_id AT1G10770.1
At1g10780	chr1:003592875	0.0	C/3592875-3593111,3593202-3593479,3593569-3594310	AT1G10780.1 CDS F-box/RNI-like superfamily protein [TAIR10] CDS gene_syn T16B5.8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like superfamily protein note F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G67190.2); Has 253 Blast hits to 253 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G10780.1p transcript_id AT1G10780.1 protein_id AT1G10780.1p transcript_id AT1G10780.1
AT1G10780	chr1:003592875	0.0	C/3592875-3593111,3593202-3593479,3593569-3594328	AT1G10780.2 AT1G10780.2 CDS F-box/RNI-like superfamily protein
At1g10790	chr1:003596360	0.0	W/3596360-3596603,3596990-3597102,3597194-3597847	AT1G10790.1 CDS hydroxyproline-rich glycoprotein family protein, putative [TAIR10] CDS gene_syn T16B5.7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10790.1p transcript_id AT1G10790.1 protein_id AT1G10790.1p transcript_id AT1G10790.1
At1g10800	chr1:003598158	0.0	C/3598158-3598514	AT1G10800.1 CDS voltage-gated hydrogen channel-like protein, putative [TAIR10] CDS gene_syn T16B5.6 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G10800.1p transcript_id AT1G10800.1 protein_id AT1G10800.1p transcript_id AT1G10800.1
AT1G10800	chr1:003598158	0.0	C/3598158-3598868	AT1G10800.2 AT1G10800.2 CDS voltage-gated hydrogen channel-like protein, putative
At1g10810	chr1:003599369	0.0	W/3599369-3599590,3599677-3599877,3599962-3600134,3600224-3600326,3600422-3600757	AT1G10810.1 CDS NAD(P)-linked oxidoreductase superfamily protein [TAIR10] CDS gene_syn T16B5.5, T16B5_5 go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND go_function aldo-keto reductase activity|GO:0004033||ISS product NAD(P)-linked oxidoreductase superfamily protein note NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60730.1); Has 29108 Blast hits to 29087 proteins in 2572 species: Archae - 640; Bacteria - 19713; Metazoa - 1440; Fungi - 2153; Plants - 1216; Viruses - 0; Other Eukaryotes - 3946 (source: NCBI BLink). protein_id AT1G10810.1p transcript_id AT1G10810.1 protein_id AT1G10810.1p transcript_id AT1G10810.1
AT1G10810	chr1:003599369	0.0	W/3599369-3599590,3599677-3599877,3599962-3600134,3600224-3600395	AT1G10810.2 AT1G10810.2 CDS NAD(P)-linked oxidoreductase superfamily protein
AT1G10810	chr1:003599611	0.0	W/3599611-3599877,3599962-3600134,3600224-3600326,3600422-3600757	AT1G10810.3 AT1G10810.3 CDS NAD(P)-linked oxidoreductase superfamily protein
At1g10820	chr1:003601437	0.0	C/3601437-3601493,3601713-3601809,3601916-3601977,3602168-3602250,3602354-3602459,3602999-3603055,3603922-3604021,3604436-3604541,3604620-3604650	AT1G10820.1 CDS hypothetical protein (DUF3755) [TAIR10] CDS gene_syn T16B5.4, T16B5_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF3755) note Protein of unknown function (DUF3755); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3755 (InterPro:IPR022228); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G60670.2); Has 155 Blast hits to 155 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G10820.1p transcript_id AT1G10820.1 protein_id AT1G10820.1p transcript_id AT1G10820.1
At1g10820	chr1:003601437	0.0	C/3601437-3601493,3601713-3601809,3601916-3601977,3602168-3602250,3602354-3602459,3602999-3603055,3603922-3604021,3604436-3604650	AT1G10820.2 CDS hypothetical protein (DUF3755) [TAIR10] CDS gene_syn T16B5.4, T16B5_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF3755) note Protein of unknown function (DUF3755); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3755 (InterPro:IPR022228); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G60670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10820.2p transcript_id AT1G10820.2 protein_id AT1G10820.2p transcript_id AT1G10820.2
AT1G10820	chr1:003601437	0.0	C/3601437-3601493,3601713-3601809,3601916-3601977,3602168-3602250,3602354-3602459,3602999-3603055,3603922-3604021,3604436-3604650	AT1G10820.3 AT1G10820.3 CDS hypothetical protein (DUF3755)
At1g10830	chr1:003605736	0.0	C/3605736-3606071,3606501-3606710,3606815-3606961,3607039-3607449	AT1G10830.1 CDS 15-cis-zeta-carotene isomerase [TAIR10] CDS gene_syn 15-cis-zeta-carotene isomerase, T16B5.3, T16B5_3, Z-ISO, Z-ISO1.1, Z-ISO1.2 gene Z-ISO function Encodes a functional 15-cis-zeta-carotene isomerase (Z-ISO). go_component chloroplast|GO:0009507|18431481|IDA go_process carotene biosynthetic process|GO:0016120|20335404|IMP product 15-cis-zeta-carotene isomerase note 15-cis-zeta-carotene isomerase (Z-ISO); FUNCTIONS IN: 9,15,9'-tri-cis-zeta-carotene isomerase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915); Has 373 Blast hits to 373 proteins in 102 species: Archae - 0; Bacteria - 164; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink). protein_id AT1G10830.1p transcript_id AT1G10830.1 protein_id AT1G10830.1p transcript_id AT1G10830.1
At1g10830	chr1:003606411	0.0	C/3606411-3606710,3606815-3606961,3607039-3607449	AT1G10830.2 CDS 15-cis-zeta-carotene isomerase [TAIR10] CDS gene_syn 15-cis-zeta-carotene isomerase, T16B5.3, T16B5_3, Z-ISO, Z-ISO1.1, Z-ISO1.2 gene Z-ISO function Encodes a functional 15-cis-zeta-carotene isomerase (Z-ISO). go_component chloroplast|GO:0009507|18431481|IDA go_process carotene biosynthetic process|GO:0016120|20335404|IMP product 15-cis-zeta-carotene isomerase note 15-cis-zeta-carotene isomerase (Z-ISO); FUNCTIONS IN: 9,15,9'-tri-cis-zeta-carotene isomerase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10830.2p transcript_id AT1G10830.2 protein_id AT1G10830.2p transcript_id AT1G10830.2
AT1G10830	chr1:003606698	0.0	C/3606698-3606961,3607039-3607449	AT1G10830.3 AT1G10830.3 CDS 15-cis-zeta-carotene isomerase
At1g10840	chr1:003607885	0.0	C/3607885-3607942,3608023-3608175,3608361-3608428,3608514-3608615,3608706-3608777,3608914-3608962,3609048-3609181,3609455-3609521,3609608-3609657	AT1G10840.2 CDS translation initiation factor 3 subunit H1 [TAIR10] CDS gene_syn T16B5.2, T16B5_2, TIF3H1, translation initiation factor 3 subunit H1 gene TIF3H1 function Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1). go_component eukaryotic translation initiation factor 3 complex|GO:0005852||ISS go_process translational initiation|GO:0006413||ISS go_function translation initiation factor activity|GO:0003743||ISS product translation initiation factor 3 subunit H1 note translation initiation factor 3 subunit H1 (TIF3H1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G10840.2p transcript_id AT1G10840.2 protein_id AT1G10840.2p transcript_id AT1G10840.2
At1g10840	chr1:003607885	0.0	C/3607885-3607942,3608023-3608175,3608361-3608428,3608514-3608615,3608706-3608777,3608914-3608962,3609048-3609181,3609455-3609521,3609608-3609711,3609811-3609927,3610094-3610173,3610290-3610299	AT1G10840.1 CDS translation initiation factor 3 subunit H1 [TAIR10] CDS gene_syn T16B5.2, T16B5_2, TIF3H1, translation initiation factor 3 subunit H1 gene TIF3H1 function Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1). go_component eukaryotic translation initiation factor 3 complex|GO:0005852||ISS go_process translational initiation|GO:0006413||ISS go_function translation initiation factor activity|GO:0003743||ISS product translation initiation factor 3 subunit H1 note translation initiation factor 3 subunit H1 (TIF3H1); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); Has 1300 Blast hits to 1299 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 532; Fungi - 366; Plants - 231; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink). protein_id AT1G10840.1p transcript_id AT1G10840.1 protein_id AT1G10840.1p transcript_id AT1G10840.1
At1g10850	chr1:003612228	0.0	W/3612228-3613557,3613682-3614343	AT1G10850.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function ATP binding|GO:0005524||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G60630.1); Has 141918 Blast hits to 107530 proteins in 3087 species: Archae - 92; Bacteria - 12469; Metazoa - 36374; Fungi - 8455; Plants - 68016; Viruses - 276; Other Eukaryotes - 16236 (source: NCBI BLink). protein_id AT1G10850.1p transcript_id AT1G10850.1 protein_id AT1G10850.1p transcript_id AT1G10850.1
At1g10865	chr1:003614789	0.0	C/3614789-3614830,3615037-3615141,3615240-3615308	AT1G10865.1 CDS cytochrome C oxidase assembly factor [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G10865.1p transcript_id AT1G10865.1 protein_id AT1G10865.1p transcript_id AT1G10865.1
At1g10865	chr1:003614821	0.0	C/3614821-3614826,3615037-3615141,3615240-3615308	AT1G10865.2 CDS cytochrome C oxidase assembly factor [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10865.2p transcript_id AT1G10865.2 protein_id AT1G10865.2p transcript_id AT1G10865.2
At1g10870	chr1:003616905	0.0	C/3616905-3617019,3617226-3617671,3617839-3617929,3618077-3618198,3618526-3618786,3618873-3618959,3619189-3619404,3619911-3620036,3620358-3620564,3621001-3621042,3621147-3621242,3621332-3621379,3621751-3621816,3622003-3622047,3622400-3622462,3622763-3622833,3622920-3623020,3623362-3623438,3623565-3623612	AT1G10870.1 CDS ARF-GAP domain 4 [TAIR10] CDS gene_syn AGD4, ARF-GAP domain 4, T19D16.20, T19D16_20 gene AGD4 function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3. go_component cytoplasm|GO:0005737||IEA go_process regulation of ARF GTPase activity|GO:0032312||IEA go_function ARF GTPase activator activity|GO:0008060||IEA go_function zinc ion binding|GO:0008270||IEA product ARF-GAP domain 4 note ARF-GAP domain 4 (AGD4); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), Ankyrin repeat-containing domain (InterPro:IPR020683), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 2 (TAIR:AT1G60860.1); Has 23403 Blast hits to 15248 proteins in 655 species: Archae - 77; Bacteria - 1735; Metazoa - 12296; Fungi - 2244; Plants - 1395; Viruses - 252; Other Eukaryotes - 5404 (source: NCBI BLink). protein_id AT1G10870.1p transcript_id AT1G10870.1 protein_id AT1G10870.1p transcript_id AT1G10870.1
AT1G10870	chr1:003616905	0.0	C/3616905-3617019,3617226-3617671,3617839-3617944,3618077-3618198,3618526-3618786,3618873-3618959,3619189-3619404,3619911-3620036,3620358-3620564,3621001-3621042,3621147-3621242,3621332-3621379,3621751-3621816,3622003-3622047,3622400-3622462,3622763-3622833,3622920-3623020,3623362-3623438,3623565-3623612	AT1G10870.2 AT1G10870.2 CDS ARF-GAP domain 4
At1g10880	chr1:003624035	0.0	C/3624035-3624253,3624334-3624504,3624651-3624776,3624877-3625068,3625169-3625348,3625835-3626380,3626500-3627021	AT1G10880.1 CDS Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [TAIR10] CDS gene_syn T19D16.28, T19D16_28 function Putative role in response to salt stress. Mutants grow larger than the wild type under salt stress condition (Ann Stapleton and Ashley Green, 2009, personal communication). go_component cellular_component|GO:0005575||ND go_process response to salt stress|GO:0009651||IMP product Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein note Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G16170.1); Has 696 Blast hits to 692 proteins in 56 species: Archae - 2; Bacteria - 7; Metazoa - 8; Fungi - 7; Plants - 576; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). protein_id AT1G10880.1p transcript_id AT1G10880.1 protein_id AT1G10880.1p transcript_id AT1G10880.1
At1g10890	chr1:003628081	0.0	W/3628081-3628229,3629098-3629304,3629845-3630064,3630255-3630545	AT1G10890.1 CDS arginine/glutamate-rich 1 protein [TAIR10] CDS gene_syn T19D16.19, T19D16_19 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes - 3081 (source: NCBI BLink). protein_id AT1G10890.1p transcript_id AT1G10890.1 protein_id AT1G10890.1p transcript_id AT1G10890.1
AT1G10890	chr1:003628081	0.0	W/3628081-3628229,3629098-3629304,3629845-3630064,3630279-3630542	AT1G10890.4 AT1G10890.4 CDS arginine/glutamate-rich 1 protein
AT1G10890	chr1:003628968	0.0	W/3628968-3628972,3629098-3629304,3629845-3630064,3630255-3630545	AT1G10890.3 AT1G10890.3 CDS arginine/glutamate-rich 1 protein
AT1G10890	chr1:003629090	0.0	W/3629090-3629304,3629845-3630064,3630255-3630545	AT1G10890.2 AT1G10890.2 CDS arginine/glutamate-rich 1 protein
AT1G10893	chr1:003630956	0.0	W/3630956-3632131	AT1G10893.1 AT1G10893.1 CDS F-box/associated interaction domain protein
At1g10900	chr1:003632396	0.0	C/3632396-3632675,3632754-3632919,3633135-3633289,3633502-3633689,3633775-3633885,3634092-3634257,3634798-3634965,3635302-3636321,3636406-3636416	AT1G10900.1 CDS Phosphatidylinositol-4-phosphate 5-kinase family protein [TAIR10] CDS gene_syn T19D16.18, T19D16_18 go_component plasma membrane|GO:0005886|17317660|IDA go_process phosphatidylinositol metabolic process|GO:0046488||IEA go_function ATP binding|GO:0005524||IEA go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||IEA go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS product Phosphatidylinositol-4-phosphate 5-kinase family protein note Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 26222 Blast hits to 7747 proteins in 608 species: Archae - 0; Bacteria - 3917; Metazoa - 3982; Fungi - 423; Plants - 1715; Viruses - 0; Other Eukaryotes - 16185 (source: NCBI BLink). protein_id AT1G10900.1p transcript_id AT1G10900.1 protein_id AT1G10900.1p transcript_id AT1G10900.1
AT1G10900	chr1:003632396	0.0	C/3632396-3632675,3632754-3632919,3633135-3633289,3633502-3633689,3633775-3633885,3634092-3634257,3634798-3634965,3635302-3636321,3636406-3636416	AT1G10900.2 AT1G10900.2 CDS Phosphatidylinositol-4-phosphate 5-kinase family protein
AT1G10900	chr1:003632396	0.0	C/3632396-3632675,3632754-3632919,3633135-3633289,3633502-3633689,3633775-3633885,3634092-3634257,3634798-3634965,3635302-3636321,3636406-3636416	AT1G10900.3 AT1G10900.3 CDS Phosphatidylinositol-4-phosphate 5-kinase family protein
At1g10910	chr1:003639908	0.0	W/3639908-3640179,3640547-3640631,3640743-3641003,3641241-3641543,3642079-3642183,3642380-3642479,3642785-3643104,3643196-3643372,3643454-3643582,3643732-3643974	AT1G10910.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn T19D16.17, T19D16_17 go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 2 (TAIR:AT1G74850.1); Has 41177 Blast hits to 13618 proteins in 293 species: Archae - 1; Bacteria - 42; Metazoa - 324; Fungi - 460; Plants - 39061; Viruses - 0; Other Eukaryotes - 1289 (source: NCBI BLink). protein_id AT1G10910.1p transcript_id AT1G10910.1 protein_id AT1G10910.1p transcript_id AT1G10910.1
AT1G10910	chr1:003639908	0.0	W/3639908-3640179,3640547-3640631,3640743-3641003,3641241-3641543,3642079-3642183,3642380-3642479,3642785-3643104,3643196-3643372,3643454-3643609	AT1G10910.2 AT1G10910.2 CDS Pentatricopeptide repeat (PPR) superfamily protein
AT1G10920	chr1:003644587	0.0	C/3644587-3646109,3646194-3646344	AT1G10920.3 AT1G10920.3 CDS NB-ARC domain-containing disease resistance protein
AT1G10920	chr1:003644587	0.0	C/3644587-3646109,3646194-3646344	AT1G10920.5 AT1G10920.5 CDS NB-ARC domain-containing disease resistance protein
At1g10920	chr1:003644587	0.0	C/3644587-3646109,3646194-3646352,3646503-3647004	AT1G10920.1 CDS NB-ARC domain-containing disease resistance protein [TAIR10] CDS gene_syn LOV1, T19D16.16, T19D16_16 gene LOV1 function Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae. go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_process response to molecule of fungal origin|GO:0002238|17804803|IEP go_process defense response|GO:0006952||ISS go_process defense response to fungus|GO:0050832|17804803|IMP product NB-ARC domain-containing disease resistance protein note LOV1; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, response to molecule of fungal origin, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1); Has 17113 Blast hits to 15625 proteins in 596 species: Archae - 16; Bacteria - 1275; Metazoa - 1625; Fungi - 139; Plants - 13787; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink). protein_id AT1G10920.1p transcript_id AT1G10920.1 protein_id AT1G10920.1p transcript_id AT1G10920.1
At1g10920	chr1:003644587	0.0	C/3644587-3646109,3646194-3646352,3646503-3647004	AT1G10920.2 CDS NB-ARC domain-containing disease resistance protein [TAIR10] CDS gene_syn LOV1, T19D16.16, T19D16_16 gene LOV1 function Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae. go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_process response to molecule of fungal origin|GO:0002238|17804803|IEP go_process defense response|GO:0006952||ISS go_process defense response to fungus|GO:0050832|17804803|IMP product NB-ARC domain-containing disease resistance protein note LOV1; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, response to molecule of fungal origin, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G10920.2p transcript_id AT1G10920.2 protein_id AT1G10920.2p transcript_id AT1G10920.2
AT1G10920	chr1:003644587	0.0	C/3644587-3646109,3646194-3646352,3646503-3647004	AT1G10920.4 AT1G10920.4 CDS NB-ARC domain-containing disease resistance protein
At1g10930	chr1:003648032	0.0	C/3648032-3648371,3648464-3648541,3648642-3648736,3648831-3648957,3649093-3649148,3649259-3649420,3649644-3649724,3649802-3649960,3650040-3650162,3650282-3650350,3650464-3650534,3650605-3650728,3650816-3650951,3651015-3651166,3651261-3651381,3651622-3651749,3651863-3651949,3652104-3652235,3652309-3652675,3652949-3653079,3653168-3653341,3653562-3653975,3654204-3654261,3654718-3654876,3654975-3654997	AT1G10930.1 CDS DNA helicase (RECQl4A) [TAIR10] CDS gene_syn ATRECQ4A, ATSGS1, RECQ4A, T19D16.15, T19D16_15 gene RECQ4A function DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. go_component intracellular|GO:0005622||IEA go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function ATP-dependent 3'-5' DNA helicase activity|GO:0043140||IEA go_process double-strand break repair via homologous recombination|GO:0000724|16146519|IGI go_process double-strand break repair via homologous recombination|GO:0000724|16146519|IMP go_process response to DNA damage stimulus|GO:0006974|16146519|IGI go_process response to DNA damage stimulus|GO:0006974|16146519|IMP go_process chromosome organization|GO:0051276|18000056|IMP go_function ATP-dependent helicase activity|GO:0008026||ISS product DNA helicase (RECQl4A) note RECQ4A; FUNCTIONS IN: helicase activity, ATP-dependent 3'-5' DNA helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: chromosome organization, response to DNA damage stimulus, double-strand break repair via homologous recombination; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RQC domain (InterPro:IPR018982), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ helicase L4B (TAIR:AT1G60930.1); Has 34923 Blast hits to 34782 proteins in 2821 species: Archae - 633; Bacteria - 21324; Metazoa - 3687; Fungi - 2728; Plants - 1606; Viruses - 18; Other Eukaryotes - 4927 (source: NCBI BLink). protein_id AT1G10930.1p transcript_id AT1G10930.1 protein_id AT1G10930.1p transcript_id AT1G10930.1
At1g10940	chr1:003656050	0.0	C/3656050-3656400,3656484-3656582,3656666-3656770,3656919-3657011,3657092-3657184,3657279-3657332,3657407-3657430,3657523-3657624,3657739-3657813,3658051-3658170	AT1G10940.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn ARABIDOPSIS SERINE/THREONINE KINASE 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, ASK1, SNF1-related protein kinase 2.4, SNRK2-4, SNRK2.4, SRK2A, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4 function Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute. go_component nucleus|GO:0005634|18433157|IDA go_process response to osmotic stress|GO:0006970|15292193|IDA go_process response to salt stress|GO:0009651|15292193|IDA go_function kinase activity|GO:0016301|15292193|IDA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like, plant (InterPro:IPR015740); BEST Arabidopsis thaliana protein match is: SNF1-related protein kinase 2.10 (TAIR:AT1G60940.2). protein_id AT1G10940.2p transcript_id AT1G10940.2 protein_id AT1G10940.2p transcript_id AT1G10940.2
At1g10940	chr1:003656050	0.0	C/3656050-3656400,3656484-3656582,3656666-3656770,3656919-3657011,3657092-3657184,3657279-3657332,3657523-3657624,3657739-3657813,3658051-3658170	AT1G10940.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn ARABIDOPSIS SERINE/THREONINE KINASE 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, ASK1, SNF1-related protein kinase 2.4, SNRK2-4, SNRK2.4, SRK2A, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4 function Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute. go_component nucleus|GO:0005634|18433157|IDA go_process response to osmotic stress|GO:0006970|15292193|IDA go_process response to salt stress|GO:0009651|15292193|IDA go_function kinase activity|GO:0016301|15292193|IDA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note SNF1-related protein kinase 2.4 (SNRK2.4); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like, plant (InterPro:IPR015740); BEST Arabidopsis thaliana protein match is: SNF1-related protein kinase 2.10 (TAIR:AT1G60940.2); Has 111412 Blast hits to 109617 proteins in 3021 species: Archae - 114; Bacteria - 12857; Metazoa - 41430; Fungi - 12032; Plants - 25317; Viruses - 521; Other Eukaryotes - 19141 (source: NCBI BLink). protein_id AT1G10940.1p transcript_id AT1G10940.1 protein_id AT1G10940.1p transcript_id AT1G10940.1
At1g10950	chr1:003659322	0.0	W/3659322-3659411,3660325-3660517,3660622-3660726,3661050-3661067,3661162-3661259,3661341-3661493,3661721-3661855,3662005-3662171,3662284-3662378,3662463-3662836,3663197-3663470,3663555-3663622	AT1G10950.1 CDS transmembrane nine 1 [TAIR10] CDS gene_syn AtTMN1, T19D16.13, T19D16_13, TMN1, transmembrane nine 1 gene TMN1 function Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. go_component membrane|GO:0016020|17432890|IDA go_component Golgi apparatus|GO:0005794|16618929|IDA go_component integral to membrane|GO:0016021||ISS product transmembrane nine 1 note transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink). protein_id AT1G10950.1p transcript_id AT1G10950.1 protein_id AT1G10950.1p transcript_id AT1G10950.1
At1g10960	chr1:003664445	0.0	W/3664445-3664891	AT1G10960.1 CDS ferredoxin 1 [TAIR10] CDS gene_syn ATFD1, FD1, T19D16.12, T19D16_12, ferredoxin 1 gene FD1 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_function electron carrier activity|GO:0009055||IEA go_function iron-sulfur cluster binding|GO:0051536||IEA go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA go_process response to karrikin|GO:0080167|20351290|IEP product ferredoxin 1 note ferredoxin 1 (FD1); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: response to karrikin; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT1G60950.1); Has 7651 Blast hits to 7649 proteins in 1369 species: Archae - 135; Bacteria - 5662; Metazoa - 7; Fungi - 14; Plants - 626; Viruses - 5; Other Eukaryotes - 1202 (source: NCBI BLink). protein_id AT1G10960.1p transcript_id AT1G10960.1 protein_id AT1G10960.1p transcript_id AT1G10960.1
AT1G10970	chr1:003665201	0.0	C/3665201-3665656,3665858-3666526	AT1G10970.2 AT1G10970.2 CDS zinc transporter
At1g10970	chr1:003665204	0.0	C/3665204-3665656,3665858-3666526	AT1G10970.1 CDS zinc transporter [TAIR10] CDS gene_syn ATZIP4, T19D16.11, T19D16_11, ZIP4, zinc transporter 4 precursor gene ZIP4 function A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency. go_component chloroplast|GO:0009507|9618566|ISS go_process cation transport|GO:0006812|11500563|ISS go_process cation transport|GO:0006812||ISS go_process response to zinc ion|GO:0010043|13129917|IEP go_process response to copper ion|GO:0046688|13129917|IEP go_function copper ion transmembrane transporter activity|GO:0005375|13129917|IGI go_function zinc ion transmembrane transporter activity|GO:0005385|20479230|IMP go_function protein binding|GO:0005515|20479230|IPI go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS go_function cation transmembrane transporter activity|GO:0008324||ISS product zinc transporter 4 precursor note zinc transporter 4 precursor (ZIP4); CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1); Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0; Bacteria - 278; Metazoa - 580; Fungi - 588; Plants - 521; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). protein_id AT1G10970.1p transcript_id AT1G10970.1 protein_id AT1G10970.1p transcript_id AT1G10970.1
At1g10980	chr1:003667531	0.0	C/3667531-3667696,3667877-3668007,3668096-3668194,3668395-3669319,3669592-3669821	AT1G10980.1 CDS Lung seven transmembrane receptor family protein [TAIR10] CDS gene_syn T19D16.10, T19D16_10 go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND product Lung seven transmembrane receptor family protein note Lung seven transmembrane receptor family protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G61670.1); Has 670 Blast hits to 669 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 291; Fungi - 146; Plants - 175; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). protein_id AT1G10980.1p transcript_id AT1G10980.1 protein_id AT1G10980.1p transcript_id AT1G10980.1
At1g10990	chr1:003670513	0.0	C/3670513-3670901,3670980-3671091	AT1G10990.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T19D16.27, T19D16_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10990.1p transcript_id AT1G10990.1 protein_id AT1G10990.1p transcript_id AT1G10990.1
At1g10990	chr1:003670513	0.0	C/3670513-3671091	AT1G10990.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T19D16.27, T19D16_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G10990.2p transcript_id AT1G10990.2 protein_id AT1G10990.2p transcript_id AT1G10990.2
At1g11000	chr1:003671935	0.0	C/3671935-3672390,3672500-3672560,3672637-3672704,3672794-3672829,3672922-3673095,3673188-3673228,3673320-3673369,3673486-3673571,3673717-3673791,3673929-3674020,3674466-3674526,3674840-3674956,3675048-3675268,3675358-3675415,3675784-3675909	AT1G11000.1 CDS Seven transmembrane MLO family protein [TAIR10] CDS gene_syn ATMLO4, MILDEW RESISTANCE LOCUS O 4, MLO4, T19D16.26, T19D16_26 gene MLO4 function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). go_component integral to membrane|GO:0016021||IEA go_process cell death|GO:0008219||IEA go_component plasma membrane|GO:0005886||ISS go_process defense response|GO:0006952||ISS go_process cell death|GO:0008219||ISS go_function calmodulin binding|GO:0005516||ISS product Seven transmembrane MLO family protein note MILDEW RESISTANCE LOCUS O 4 (MLO4); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT5G53760.2); Has 528 Blast hits to 517 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 522; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G11000.1p transcript_id AT1G11000.1 protein_id AT1G11000.1p transcript_id AT1G11000.1
AT1G11000	chr1:003671935	0.0	C/3671935-3672390,3672500-3672560,3672637-3672704,3672794-3672829,3672922-3673095,3673188-3673228,3673320-3673369,3673486-3673571,3673717-3673791,3673929-3674020,3674466-3674526,3674840-3674956,3675048-3675268,3675358-3675415,3675784-3675909	AT1G11000.3 AT1G11000.3 CDS Seven transmembrane MLO family protein
AT1G11000	chr1:003672567	0.0	C/3672567-3672704,3672794-3672829,3672922-3673095,3673188-3673228,3673320-3673369,3673486-3673571,3673717-3673791,3673929-3674020,3674466-3674526,3674840-3674956,3675048-3675268,3675358-3675415,3675784-3675909	AT1G11000.2 AT1G11000.2 CDS Seven transmembrane MLO family protein
At1g11010	chr1:003676607	0.0	W/3676607-3676644	AT1G11010.1 [TAIR10] tRNA gene_syn 60002.TRNA-MET-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Met (anticodon: CAT) transcript_id AT1G11010.1
AT1G11025	chr1:003676626	0.0	C/3676626-3676797,3676907-3677250	AT1G11025.1 AT1G11025.1 CDS hypothetical protein
At1g11020	chr1:003676968	0.0	W/3676968-3677429,3677733-3677856,3677971-3678350	AT1G11020.1 CDS RING/FYVE/PHD zinc finger superfamily protein [TAIR10] CDS gene_syn T19D16.25, T19D16_25 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/FYVE/PHD zinc finger superfamily protein note RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G22120.2); Has 1259 Blast hits to 1258 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 590; Fungi - 144; Plants - 311; Viruses - 11; Other Eukaryotes - 203 (source: NCBI BLink). protein_id AT1G11020.1p transcript_id AT1G11020.1 protein_id AT1G11020.1p transcript_id AT1G11020.1
At1g11030	chr1:003678775	0.0	C/3678775-3678848	AT1G11030.1 [TAIR10] tRNA gene_syn 60002.TRNA-ARG-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Arg (anticodon: TCG) transcript_id AT1G11030.1
At1g11040	chr1:003679225	0.0	C/3679225-3679675,3679750-3680477,3680787-3680924	AT1G11040.1 CDS HSP40/DnaJ peptide-binding protein [TAIR10] CDS gene_syn T19D16.7, T19D16_7 go_process protein folding|GO:0006457||IEA go_function heat shock protein binding|GO:0031072||IEA go_function unfolded protein binding|GO:0051082||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product HSP40/DnaJ peptide-binding protein note HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G44160.1); Has 19507 Blast hits to 13358 proteins in 2831 species: Archae - 102; Bacteria - 8184; Metazoa - 2012; Fungi - 1146; Plants - 786; Viruses - 38; Other Eukaryotes - 7239 (source: NCBI BLink). protein_id AT1G11040.1p transcript_id AT1G11040.1 protein_id AT1G11040.1p transcript_id AT1G11040.1
At1g11050	chr1:003681892	0.0	W/3681892-3683769	AT1G11050.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn T19D16.6, T19D16_6 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor-like kinase in in flowers 3 (TAIR:AT2G48010.1); Has 115297 Blast hits to 114175 proteins in 4324 species: Archae - 104; Bacteria - 13350; Metazoa - 42303; Fungi - 9816; Plants - 32853; Viruses - 335; Other Eukaryotes - 16536 (source: NCBI BLink). protein_id AT1G11050.1p transcript_id AT1G11050.1 protein_id AT1G11050.1p transcript_id AT1G11050.1
At1g11055	chr1:003683919	0.0	C/3683919-3684095	AT1G11055.1 [TAIR10] pseudogene
At1g11060	chr1:003684568	0.0	W/3684568-3685193,3685688-3685787,3685921-3686260,3686457-3686569,3687025-3687153,3687294-3687387,3687489-3687593,3687702-3688321,3688425-3688678,3688859-3689006,3689099-3689196,3689283-3689364,3689454-3689537	AT1G11060.1 CDS WAPL (Wings apart-like protein regulation of heterochromatin) protein [TAIR10] CDS gene_syn T19D16.5, T19D16_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product WAPL (Wings apart-like protein regulation of heterochromatin) protein note WAPL (Wings apart-like protein regulation of heterochromatin) protein; BEST Arabidopsis thaliana protein match is: WAPL (Wings apart-like protein regulation of heterochromatin) protein (TAIR:AT1G61030.1); Has 319 Blast hits to 253 proteins in 105 species: Archae - 2; Bacteria - 73; Metazoa - 168; Fungi - 7; Plants - 48; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G11060.1p transcript_id AT1G11060.1 protein_id AT1G11060.1p transcript_id AT1G11060.1
At1g11070	chr1:003690406	0.0	C/3690406-3690624,3690706-3690858,3690969-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693510,3693622-3693648	AT1G11070.1 CDS hydroxyproline-rich glycoprotein family protein, putative [TAIR10] CDS gene_syn T19D16.24, T19D16_24 go_component cellular_component|GO:0005575||ND product unknown protein note BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in 152 species: Archae - 0; Bacteria - 68; Metazoa - 159; Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). protein_id AT1G11070.1p transcript_id AT1G11070.1 protein_id AT1G11070.1p transcript_id AT1G11070.1
AT1G11070	chr1:003690406	0.0	C/3690406-3690624,3690706-3690858,3690969-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693510,3693622-3693651	AT1G11070.4 AT1G11070.4 CDS hydroxyproline-rich glycoprotein family protein, putative
AT1G11070	chr1:003690894	0.0	C/3690894-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693279	AT1G11070.5 AT1G11070.5 CDS hydroxyproline-rich glycoprotein family protein, putative
AT1G11070	chr1:003690894	0.0	C/3690894-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693510,3693622-3693651	AT1G11070.2 AT1G11070.2 CDS hydroxyproline-rich glycoprotein family protein, putative
AT1G11070	chr1:003690894	0.0	C/3690894-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693510,3693622-3693651	AT1G11070.3 AT1G11070.3 CDS hydroxyproline-rich glycoprotein family protein, putative
At1g11080	chr1:003694809	0.0	C/3694809-3694821,3694921-3695063,3695151-3695256,3695521-3695616,3695704-3695837,3695919-3696215,3696395-3696492,3696626-3696718,3696812-3696907,3697011-3697118,3697456-3697759	AT1G11080.2 CDS serine carboxypeptidase-like 31 [TAIR10] CDS gene_syn T19D16.4, T19D16_4, scpl31, serine carboxypeptidase-like 31 gene scpl31 go_component endomembrane system|GO:0012505||IEA go_process proteolysis|GO:0006508||IEA go_function serine-type carboxypeptidase activity|GO:0004185||IEA go_process proteolysis|GO:0006508||ISS go_function serine-type carboxypeptidase activity|GO:0004185||ISS product serine carboxypeptidase-like 31 note serine carboxypeptidase-like 31 (scpl31); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 30 (TAIR:AT4G15100.1). protein_id AT1G11080.2p transcript_id AT1G11080.2 protein_id AT1G11080.2p transcript_id AT1G11080.2
At1g11080	chr1:003694917	0.0	C/3694917-3695063,3695151-3695256,3695521-3695616,3695704-3695837,3695919-3696215,3696395-3696492,3696626-3696718,3696812-3696907,3697011-3697118,3697456-3697759	AT1G11080.1 CDS serine carboxypeptidase-like 31 [TAIR10] CDS gene_syn T19D16.4, T19D16_4, scpl31, serine carboxypeptidase-like 31 gene scpl31 go_component endomembrane system|GO:0012505||IEA go_process proteolysis|GO:0006508||IEA go_function serine-type carboxypeptidase activity|GO:0004185||IEA go_process proteolysis|GO:0006508||ISS go_function serine-type carboxypeptidase activity|GO:0004185||ISS product serine carboxypeptidase-like 31 note serine carboxypeptidase-like 31 (scpl31); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 30 (TAIR:AT4G15100.1); Has 3569 Blast hits to 3515 proteins in 359 species: Archae - 0; Bacteria - 168; Metazoa - 632; Fungi - 857; Plants - 1467; Viruses - 0; Other Eukaryotes - 445 (source: NCBI BLink). protein_id AT1G11080.1p transcript_id AT1G11080.1 protein_id AT1G11080.1p transcript_id AT1G11080.1
At1g11090	chr1:003702655	0.0	W/3702655-3703629	AT1G11090.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T19D16.3, T19D16_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G47630.1); Has 3873 Blast hits to 3868 proteins in 1106 species: Archae - 36; Bacteria - 2649; Metazoa - 131; Fungi - 140; Plants - 451; Viruses - 35; Other Eukaryotes - 431 (source: NCBI BLink). protein_id AT1G11090.1p transcript_id AT1G11090.1 protein_id AT1G11090.1p transcript_id AT1G11090.1
AT1G11100	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706056,3706189-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708557-3708569	AT1G11100.5 AT1G11100.5 CDS SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
At1g11100	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706056,3706189-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708585-3708806,3708978-3709056,3709162-3709302	AT1G11100.1 CDS SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related [TAIR10] CDS gene_syn T19D16.2, T19D16_2 go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function zinc ion binding|GO:0008270||IEA go_function DNA binding|GO:0003677||ISS go_function helicase activity|GO:0004386||ISS go_function ATP binding|GO:0005524||ISS product SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related note SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 23913 Blast hits to 14415 proteins in 1657 species: Archae - 99; Bacteria - 7103; Metazoa - 5587; Fungi - 5290; Plants - 2119; Viruses - 156; Other Eukaryotes - 3559 (source: NCBI BLink). protein_id AT1G11100.1p transcript_id AT1G11100.1 protein_id AT1G11100.1p transcript_id AT1G11100.1
AT1G11100	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708557-3708569	AT1G11100.3 AT1G11100.3 CDS SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
AT1G11100	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708585-3708806,3708978-3709056,3709162-3709302	AT1G11100.4 AT1G11100.4 CDS SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
At1g11100	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708585-3708806,3708981-3709056,3709162-3709302	AT1G11100.2 CDS SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related [TAIR10] CDS gene_syn T19D16.2, T19D16_2 go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function zinc ion binding|GO:0008270||IEA go_function DNA binding|GO:0003677||ISS go_function helicase activity|GO:0004386||ISS go_function ATP binding|GO:0005524||ISS product SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related note SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1). protein_id AT1G11100.2p transcript_id AT1G11100.2 protein_id AT1G11100.2p transcript_id AT1G11100.2
At1g11110	chr1:003710364	0.0	W/3710364-3710387,3710573-3710855,3710949-3711055,3711173-3711295,3711561-3711723,3711972-3712108	AT1G11110.1 CDS LisH and RanBPM domains containing protein [TAIR10] CDS gene_syn T19D16.23, T19D16_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product LisH and RanBPM domains containing protein note LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.6); Has 472 Blast hits to 472 proteins in 160 species: Archae - 0; Bacteria - 20; Metazoa - 190; Fungi - 95; Plants - 94; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). protein_id AT1G11110.1p transcript_id AT1G11110.1 protein_id AT1G11110.1p transcript_id AT1G11110.1
AT1G11110	chr1:003710505	0.0	W/3710505-3710507,3710573-3710855,3710949-3711055,3711173-3711295,3711561-3711723,3711972-3712108	AT1G11110.3 AT1G11110.3 CDS LisH and RanBPM domains containing protein
AT1G11110	chr1:003710717	0.0	W/3710717-3710855,3710949-3711055,3711173-3711295,3711561-3711723,3711972-3712108	AT1G11110.2 AT1G11110.2 CDS LisH and RanBPM domains containing protein
At1g11112	chr1:003713220	0.0	C/3713220-3713456	AT1G11112.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11112.1p transcript_id AT1G11112.1 protein_id AT1G11112.1p transcript_id AT1G11112.1
At1g11120	chr1:003715229	0.0	W/3715229-3715543,3717150-3717320	AT1G11120.2 CDS CTTNBP 2 amino-terminal-like protein, putative [TAIR10] CDS gene_syn T19D16.22, T19D16_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11120.2p transcript_id AT1G11120.2 protein_id AT1G11120.2p transcript_id AT1G11120.2
At1g11120	chr1:003715229	0.0	W/3715229-3715547,3716506-3716579,3717150-3717320	AT1G11120.1 CDS CTTNBP 2 amino-terminal-like protein, putative [TAIR10] CDS gene_syn T19D16.22, T19D16_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 270 Blast hits to 255 proteins in 62 species: Archae - 0; Bacteria - 2; Metazoa - 93; Fungi - 14; Plants - 126; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G11120.1p transcript_id AT1G11120.1 protein_id AT1G11120.1p transcript_id AT1G11120.1
At1g11125	chr1:003718846	0.0	W/3718846-3719643	AT1G11125.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1). protein_id AT1G11125.1p transcript_id AT1G11125.1 protein_id AT1G11125.1p transcript_id AT1G11125.1
At1g11130	chr1:003723135	0.0	W/3723135-3723225,3723603-3723732,3723830-3723901,3724067-3724132,3724224-3724295,3724379-3724450,3724530-3724601,3724676-3724741,3724839-3724904,3724988-3725481,3725578-3725936,3726027-3726298,3726372-3726510,3726594-3726709,3726846-3727002,3727116-3727178	AT1G11130.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn AT1G11140, SCM, SCRAMBLED, SRF9, STRUBBELIG, STRUBBELIG-RECEPTOR FAMILY 9, SUB, T19D16.8 gene SUB function Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3. Required for floral organ shape, the development of the outer integument of ovules, and stem development. Regulates cell shape and cell division planes in the L2 layer of floral meristems and the L1-derived outer integument of ovules. Controls specification of epidermal root hairs. Participates in the coordination of cell morphogenesis between cell layers during floral development. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|15618487|ISS go_component plasma membrane|GO:0005886|20298225|IDA go_process cell morphogenesis|GO:0000902|20298225|IEP go_process cell morphogenesis|GO:0000902|20298225|IMP go_process signal transduction|GO:0007165|11751054|IC go_process positive regulation of atrichoblast fate specification|GO:0010059|15618487|IMP go_process positive regulation of trichoblast fate specification|GO:0010063|15618487|IMP go_process root meristem specification|GO:0010071|20298225|IMP go_process shoot system development|GO:0022621|20298225|TAS go_process floral organ development|GO:0048437|15951420|IMP go_process floral organ development|GO:0048437|20298225|IEP go_process ovule development|GO:0048481|15951420|IMP go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|15618487|ISS product Leucine-rich repeat protein kinase family protein note STRUBBELIG (SUB); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1); Has 153928 Blast hits to 101875 proteins in 2737 species: Archae - 122; Bacteria - 10876; Metazoa - 38100; Fungi - 7570; Plants - 81122; Viruses - 718; Other Eukaryotes - 15420 (source: NCBI BLink). protein_id AT1G11130.1p transcript_id AT1G11130.1 protein_id AT1G11130.1p transcript_id AT1G11130.1
AT1G11130	chr1:003723843	0.0	W/3723843-3723901,3724067-3724132,3724224-3724295,3724379-3724450,3724530-3724601,3724676-3724741,3724839-3724904,3724988-3725481,3725578-3725936,3726027-3726298,3726372-3726510,3726594-3726709,3726846-3727002,3727116-3727178	AT1G11130.2 AT1G11130.2 CDS Leucine-rich repeat protein kinase family protein
At1g11145	chr1:003727532	0.0	C/3727532-3727636,3727712-3728044,3728116-3728166	AT1G11145.1 CDS hypothetical protein (DUF674) [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF674) note Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 48 Blast hits to 48 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11145.1p transcript_id AT1G11145.1 protein_id AT1G11145.1p transcript_id AT1G11145.1
At1g11150	chr1:003728971	0.0	W/3728971-3731624	AT1G11150.1 [TAIR10] mRNA
At1g11150	chr1:003728971	0.0	W/3728971-3731624	AT1G11150 [TAIR10] TE pseudo gene_syn T28P6.22 note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
At1g11160	chr1:003733406	0.0	W/3733406-3733430,3733797-3733927,3734154-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736248-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739170,3739303-3739363	AT1G11160.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn T28P6.17, T28P6_17 go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11160.1p transcript_id AT1G11160.1 protein_id AT1G11160.1p transcript_id AT1G11160.1
AT1G11160	chr1:003733406	0.0	W/3733406-3733430,3733797-3733927,3734154-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736254-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739170,3739303-3739363	AT1G11160.2 AT1G11160.2 CDS Transducin/WD40 repeat-like superfamily protein
AT1G11160	chr1:003733406	0.0	W/3733406-3733430,3733797-3733927,3734154-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736254-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739174	AT1G11160.4 AT1G11160.4 CDS Transducin/WD40 repeat-like superfamily protein
AT1G11160	chr1:003734124	0.0	W/3734124-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736254-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739170,3739303-3739363	AT1G11160.3 AT1G11160.3 CDS Transducin/WD40 repeat-like superfamily protein
At1g11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.1 CDS lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [TAIR10] CDS gene_syn T28P6.16, T28P6_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF707) note Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4); Has 308 Blast hits to 308 proteins in 23 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G11170.1p transcript_id AT1G11170.1 protein_id AT1G11170.1p transcript_id AT1G11170.1
AT1G11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.5 AT1G11170.5 CDS lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
AT1G11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.6 AT1G11170.6 CDS lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
AT1G11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.7 AT1G11170.7 CDS lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
AT1G11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744070	AT1G11170.3 AT1G11170.3 CDS lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
AT1G11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743892	AT1G11170.4 AT1G11170.4 CDS lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
AT1G11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743892	AT1G11170.8 AT1G11170.8 CDS lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
At1g11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743667,3743794-3743828	AT1G11170.2 CDS lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [TAIR10] CDS gene_syn T28P6.16, T28P6_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF707) note Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G11170.2p transcript_id AT1G11170.2 protein_id AT1G11170.2p transcript_id AT1G11170.2
AT1G11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743207	AT1G11170.9 AT1G11170.9 CDS lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
At1g11175	chr1:003744858	0.0	W/3744858-3745655	AT1G11175.1 [TAIR10] ncRNA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G11175.1
At1g11180	chr1:003745829	0.0	W/3745829-3745888,3746344-3746466,3746531-3746632,3746804-3746837,3746963-3747085,3747217-3747279,3747394-3747487,3747599-3747644,3747751-3747818,3747903-3747951,3748074-3748118,3748221-3748307	AT1G11180.2 CDS Secretory carrier membrane protein (SCAMP) family protein [TAIR10] CDS gene_syn T28P6.15, T28P6_15 go_component integral to membrane|GO:0016021||IEA go_process protein transport|GO:0015031||IEA go_function transmembrane transporter activity|GO:0022857||ISS product Secretory carrier membrane protein (SCAMP) family protein note Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1). protein_id AT1G11180.2p transcript_id AT1G11180.2 protein_id AT1G11180.2p transcript_id AT1G11180.2
AT1G11180	chr1:003745829	0.0	W/3745829-3745888,3746344-3746466,3746570-3746632,3746804-3746837,3746963-3747085,3747217-3747279,3747394-3747487,3747599-3747644,3747751-3747818,3747903-3747951,3748074-3748118,3748221-3748307	AT1G11180.4 AT1G11180.4 CDS Secretory carrier membrane protein (SCAMP) family protein
At1g11180	chr1:003745829	0.0	W/3745829-3745888,3746344-3746466,3746570-3746632,3746804-3746837,3746963-3747085,3747217-3747279,3747394-3747487,3747599-3747644,3747751-3747818,3747903-3747951,3748074-3748139,3748221-3748307	AT1G11180.1 CDS Secretory carrier membrane protein (SCAMP) family protein [TAIR10] CDS gene_syn T28P6.15, T28P6_15 go_component integral to membrane|GO:0016021||IEA go_process protein transport|GO:0015031||IEA go_function transmembrane transporter activity|GO:0022857||ISS product Secretory carrier membrane protein (SCAMP) family protein note Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1); Has 667 Blast hits to 665 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 372; Fungi - 14; Plants - 226; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). protein_id AT1G11180.1p transcript_id AT1G11180.1 protein_id AT1G11180.1p transcript_id AT1G11180.1
AT1G11180	chr1:003745829	0.0	W/3745829-3745888,3746344-3746466,3746570-3746632,3746804-3746837,3746963-3747085,3747217-3747279,3747394-3747487,3747599-3747644,3747751-3747818,3747903-3747951,3748074-3748139,3748221-3748307	AT1G11180.3 AT1G11180.3 CDS Secretory carrier membrane protein (SCAMP) family protein
At1g11185	chr1:003749510	0.0	W/3749510-3750035	AT1G11185.1 [TAIR10] ncRNA function Unknown gene go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G11185.1
At1g11190	chr1:003750338	0.0	C/3750338-3750465,3750667-3750740,3751219-3751283,3751354-3751449,3751534-3751617,3751720-3751775,3751898-3752005,3752115-3752295,3752571-3752696	AT1G11190.1 CDS bifunctional nuclease i [TAIR10] CDS gene_syn BFN1, ENDO1, ENDONUCLEASE 1, T28P6.14, T28P6_14, bifunctional nuclease i gene BFN1 function Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops). go_component endomembrane system|GO:0012505||IEA go_process DNA catabolic process|GO:0006308||IEA go_process DNA catabolic process|GO:0006308||ISS go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|10631260|IDA go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|17651368|IDA go_function nucleic acid binding|GO:0003676||ISS go_function endoribonuclease activity, producing 5'-phosphomonoesters|GO:0016891|10631260|IDA go_function T/G mismatch-specific endonuclease activity|GO:0043765|17651368|IDA product bifunctional nuclease i note bifunctional nuclease i (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5'-phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 701 Blast hits to 698 proteins in 200 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 98; Plants - 121; Viruses - 4; Other Eukaryotes - 291 (source: NCBI BLink). protein_id AT1G11190.1p transcript_id AT1G11190.1 protein_id AT1G11190.1p transcript_id AT1G11190.1
At1g11200	chr1:003753896	0.0	W/3753896-3754162,3754267-3754680,3755253-3755459	AT1G11200.1 CDS organic solute transporter ostalpha protein (DUF300) [TAIR10] CDS gene_syn T28P6.25 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND product Protein of unknown function (DUF300) note Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G21570.1); Has 839 Blast hits to 837 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 195; Plants - 241; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink). protein_id AT1G11200.1p transcript_id AT1G11200.1 protein_id AT1G11200.1p transcript_id AT1G11200.1
At1g11210	chr1:003755876	0.0	C/3755876-3756261,3756371-3756911	AT1G11210.1 CDS cotton fibre protein, putative (DUF761) [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process response to oxidative stress|GO:0006979|18614705|IMP go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF761) note Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G11210.1p transcript_id AT1G11210.1 protein_id AT1G11210.1p transcript_id AT1G11210.1
At1g11220	chr1:003760022	0.0	C/3760022-3760374,3760586-3761165	AT1G11220.1 CDS cotton fiber, putative (DUF761) [TAIR10] CDS gene_syn T28P6.12, T28P6_12 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF761) note Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11230.1); Has 88 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11220.1p transcript_id AT1G11220.1 protein_id AT1G11220.1p transcript_id AT1G11220.1
AT1G11220	chr1:003760022	0.0	C/3760022-3760374,3760586-3761210	AT1G11220.2 AT1G11220.2 CDS cotton fiber, putative (DUF761)
At1g11230	chr1:003763439	0.0	C/3763439-3763785,3763906-3764464	AT1G11230.1 CDS transmembrane protein, putative (DUF761) [TAIR10] CDS gene_syn T28P6.11, T28P6_11 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF761) note Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1); Has 73 Blast hits to 72 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11230.1p transcript_id AT1G11230.1 protein_id AT1G11230.1p transcript_id AT1G11230.1
At1g11230	chr1:003763439	0.0	C/3763439-3764464	AT1G11230.2 CDS transmembrane protein, putative (DUF761) [TAIR10] CDS gene_syn T28P6.11, T28P6_11 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF761) note Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1). protein_id AT1G11230.2p transcript_id AT1G11230.2 protein_id AT1G11230.2p transcript_id AT1G11230.2
At1g11240	chr1:003766936	0.0	C/3766936-3767192,3767406-3767520,3767885-3767990,3768088-3768212	AT1G11240.1 CDS ribosomal RNA-processing protein [TAIR10] CDS gene_syn T28P6.24, T28P6_24 go_component cellular_component|GO:0005575||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). protein_id AT1G11240.1p transcript_id AT1G11240.1 protein_id AT1G11240.1p transcript_id AT1G11240.1
At1g11250	chr1:003768724	0.0	W/3768724-3769187,3769274-3769706	AT1G11250.1 CDS syntaxin of plants 125 [TAIR10] CDS gene_syn ATSYP125, SYP125, T28P6.10, T28P6_10, syntaxin of plants 125 gene SYP125 function member of SYP12 Gene Family go_component membrane|GO:0016020||IEA go_process intracellular protein transport|GO:0006886|11115874|TAS go_process cellular membrane fusion|GO:0006944|11115874|TAS go_function SNAP receptor activity|GO:0005484|11115874|TAS product syntaxin of plants 125 note syntaxin of plants 125 (SYP125); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2564 Blast hits to 2556 proteins in 299 species: Archae - 11; Bacteria - 67; Metazoa - 1171; Fungi - 457; Plants - 455; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink). protein_id AT1G11250.1p transcript_id AT1G11250.1 protein_id AT1G11250.1p transcript_id AT1G11250.1
At1g11260	chr1:003777460	0.0	W/3777460-3777592,3777900-3778222,3778929-3779558,3779651-3780133	AT1G11260.1 CDS sugar transporter 1 [TAIR10] CDS gene_syn ATSTP1, STP1, SUGAR TRANSPORTER 1, T28P6.9, T28P6_9, sugar transporter 1 gene STP1 function Encodes a H+/hexose cotransporter. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|15060130|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component nucleus|GO:0005634|18433157|IDA go_component membrane|GO:0016020||ISS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product sugar transporter 1 note sugar transporter 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 12 (TAIR:AT4G21480.1); Has 29569 Blast hits to 28978 proteins in 2050 species: Archae - 503; Bacteria - 13950; Metazoa - 4366; Fungi - 6940; Plants - 2466; Viruses - 2; Other Eukaryotes - 1342 (source: NCBI BLink). protein_id AT1G11260.1p transcript_id AT1G11260.1 protein_id AT1G11260.1p transcript_id AT1G11260.1
At1g11265	chr1:003781235	0.0	W/3781235-3785293	AT1G11265.1 [TAIR10] mRNA
At1g11265	chr1:003781235	0.0	W/3781235-3785293	AT1G11265 [TAIR10] TE pseudo gene_syn T28P6.8, T28P6_8 note Transposable element gene, copia-like retrotransposon family, has a 3.4e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
At1g11270	chr1:003785715	0.0	C/3785715-3786653	AT1G11270.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS gene_syn T28P6.23, T28P6_23 go_process heat acclimation|GO:0010286|16807682|IEP go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1191 Blast hits to 1176 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1189; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G11270.1p transcript_id AT1G11270.1 protein_id AT1G11270.1p transcript_id AT1G11270.1
At1g11270	chr1:003785715	0.0	C/3785715-3786653	AT1G11270.2 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS gene_syn T28P6.23, T28P6_23 go_process heat acclimation|GO:0010286|16807682|IEP go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G11270.2p transcript_id AT1G11270.2 protein_id AT1G11270.2p transcript_id AT1G11270.2
AT1G11270	chr1:003785715	0.0	C/3785715-3786653	AT1G11270.4 AT1G11270.4 CDS F-box and associated interaction domains-containing protein
At1g11270	chr1:003785833	0.0	C/3785833-3785848,3785998-3786653	AT1G11270.3 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS gene_syn T28P6.23, T28P6_23 go_process heat acclimation|GO:0010286|16807682|IEP go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G11270.3p transcript_id AT1G11270.3 protein_id AT1G11270.3p transcript_id AT1G11270.3
At1g11280	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788842,3789119-3789226,3789340-3790621	AT1G11280.3 CDS S-locus lectin protein kinase family protein [TAIR10] CDS gene_syn T28P6.7, T28P6_7 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process recognition of pollen|GO:0048544||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function sugar binding|GO:0005529||IEA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product S-locus lectin protein kinase family protein note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-domain-1 29 (TAIR:AT1G61380.1); Has 119306 Blast hits to 117553 proteins in 4294 species: Archae - 104; Bacteria - 13114; Metazoa - 43962; Fungi - 9889; Plants - 34469; Viruses - 418; Other Eukaryotes - 17350 (source: NCBI BLink). protein_id AT1G11280.3p transcript_id AT1G11280.3 protein_id AT1G11280.3p transcript_id AT1G11280.3
At1g11280	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788842,3789119-3789226,3789340-3790647,3790725-3790728	AT1G11280.4 CDS S-locus lectin protein kinase family protein [TAIR10] CDS gene_syn T28P6.7, T28P6_7 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process recognition of pollen|GO:0048544||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function sugar binding|GO:0005529||IEA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product S-locus lectin protein kinase family protein note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-domain-1 29 (TAIR:AT1G61380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G11280.4p transcript_id AT1G11280.4 protein_id AT1G11280.4p transcript_id AT1G11280.4
At1g11280	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788878,3789119-3789226,3789340-3790621	AT1G11280.2 CDS S-locus lectin protein kinase family protein [TAIR10] CDS gene_syn T28P6.7, T28P6_7 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process recognition of pollen|GO:0048544||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function sugar binding|GO:0005529||IEA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product S-locus lectin protein kinase family protein note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1); Has 119975 Blast hits to 118187 proteins in 4400 species: Archae - 104; Bacteria - 13364; Metazoa - 44144; Fungi - 9898; Plants - 34683; Viruses - 420; Other Eukaryotes - 17362 (source: NCBI BLink). protein_id AT1G11280.2p transcript_id AT1G11280.2 protein_id AT1G11280.2p transcript_id AT1G11280.2
At1g11280	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788878,3789119-3789226,3789340-3790647,3790725-3790728	AT1G11280.1 CDS S-locus lectin protein kinase family protein [TAIR10] CDS gene_syn T28P6.7, T28P6_7 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process recognition of pollen|GO:0048544||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function sugar binding|GO:0005529||IEA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product S-locus lectin protein kinase family protein note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1); Has 119990 Blast hits to 118206 proteins in 4416 species: Archae - 104; Bacteria - 13409; Metazoa - 44077; Fungi - 9917; Plants - 34701; Viruses - 420; Other Eukaryotes - 17362 (source: NCBI BLink). protein_id AT1G11280.1p transcript_id AT1G11280.1 protein_id AT1G11280.1p transcript_id AT1G11280.1
AT1G11280	chr1:003787968	0.0	C/3787968-3787985,3788084-3788307,3788410-3788620,3788706-3788878,3789119-3789226,3789340-3790621	AT1G11280.5 AT1G11280.5 CDS S-locus lectin protein kinase family protein
At1g11290	chr1:003791454	0.0	C/3791454-3793883	AT1G11290.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn CHLORORESPIRATORY REDUCTION22, CRR22, T28P6.20, T28P6_20 gene CRR22 function Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity. go_component chloroplast|GO:0009507|19182104|IDA go_process mRNA modification|GO:0016556|19182104|IMP go_function endonuclease activity|GO:0004519|19182104|IDA product Pentatricopeptide repeat (PPR) superfamily protein note CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). protein_id AT1G11290.1p transcript_id AT1G11290.1 protein_id AT1G11290.1p transcript_id AT1G11290.1
At1g11300	chr1:003794389	0.0	W/3794389-3795676,3795766-3795873,3795955-3796133,3796218-3796428,3796511-3796748,3796829-3796958,3797038-3797346	AT1G11300.1 CDS G-type lectin S-receptor-like Serine/Threonine-kinase [TAIR10] CDS gene_syn T28P6.6, T28P6_6 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process recognition of pollen|GO:0048544||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function sugar binding|GO:0005529||IEA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding note protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.2); Has 247442 Blast hits to 123826 proteins in 4585 species: Archae - 216; Bacteria - 26920; Metazoa - 91063; Fungi - 20518; Plants - 70734; Viruses - 831; Other Eukaryotes - 37160 (source: NCBI BLink). protein_id AT1G11300.1p transcript_id AT1G11300.1 protein_id AT1G11300.1p transcript_id AT1G11300.1
AT1G11300	chr1:003794389	0.0	W/3794389-3795676,3795766-3795873,3795955-3796133,3796218-3796428,3796511-3796748,3796829-3796958,3797038-3797346	AT1G11300.3 AT1G11300.3 CDS G-type lectin S-receptor-like Serine/Threonine-kinase
AT1G11300	chr1:003794389	0.0	W/3794389-3795676,3795766-3795873,3795955-3796133,3796218-3796428,3796511-3796748,3796829-3796958,3797038-3797346	AT1G11300.4 AT1G11300.4 CDS G-type lectin S-receptor-like Serine/Threonine-kinase
AT1G11300	chr1:003794389	0.0	W/3794389-3795676,3795811-3795873,3795955-3796133,3796218-3796428,3796511-3796748,3796829-3796958,3797038-3797346	AT1G11300.2 AT1G11300.2 CDS G-type lectin S-receptor-like Serine/Threonine-kinase
AT1G11303	chr1:003797769	0.0	W/3797769-3799056,3799147-3799254,3799336-3799514,3799586-3799796,3799880-3800117,3800202-3800331,3800411-3800719	AT1G11303.1 AT1G11303.1 CDS G-type lectin S-receptor-like Serine/Threonine-kinase
AT1G11305	chr1:003797769	0.0	W/3797769-3799056,3799147-3799254,3799336-3799514,3799586-3799796,3799880-3800117,3800202-3800331,3800411-3800719	AT1G11305.1 AT1G11305.1 CDS G-type lectin S-receptor-like Serine/Threonine-kinase
AT1G11310	chr1:003800899	0.0	C/3800899-3801306,3801400-3801460,3801550-3801617,3801703-3801738,3801829-3802002,3802082-3802122,3802209-3802258,3802345-3802439,3802523-3802686,3802757-3802817,3802911-3803027,3803121-3803381	AT1G11310.3 AT1G11310.3 CDS Seven transmembrane MLO family protein
At1g11310	chr1:003800899	0.0	C/3800899-3801306,3801400-3801460,3801550-3801617,3801703-3801738,3801829-3802002,3802082-3802122,3802209-3802258,3802345-3802439,3802523-3802686,3802757-3802817,3802911-3803027,3803121-3803386,3803502-3803559,3803748-3803870	AT1G11310.1 CDS Seven transmembrane MLO family protein [TAIR10] CDS gene_syn ATMLO2, MILDEW RESISTANCE LOCUS O 2, MLO2, PMR2, POWDERY MILDEW RESISTANT 2, T28P6.4, T28P6_4 gene MLO2 function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|16525893|ISS go_component plasma membrane|GO:0005886|16525893|TAS go_component plasma membrane|GO:0005886||ISS go_process defense response|GO:0006952||ISS go_process cell death|GO:0008219||ISS go_process response to fungus|GO:0009620|10677553|IMP go_process defense response to fungus, incompatible interaction|GO:0009817|16732289|IMP go_process negative regulation of defense response|GO:0031348|16732289|IMP go_function calmodulin binding|GO:0005516||ISS product Seven transmembrane MLO family protein note MILDEW RESISTANCE LOCUS O 2 (MLO2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, response to fungus, negative regulation of defense response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G61560.1); Has 559 Blast hits to 538 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 551; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G11310.1p transcript_id AT1G11310.1 protein_id AT1G11310.1p transcript_id AT1G11310.1
At1g11310	chr1:003801546	0.0	C/3801546-3801617,3801703-3801738,3801829-3802002,3802082-3802122,3802209-3802258,3802345-3802439,3802523-3802686,3802757-3802817,3802911-3803027,3803121-3803386,3803502-3803559,3803748-3803870	AT1G11310.2 CDS Seven transmembrane MLO family protein [TAIR10] CDS gene_syn ATMLO2, MILDEW RESISTANCE LOCUS O 2, MLO2, PMR2, POWDERY MILDEW RESISTANT 2, T28P6.4, T28P6_4 gene MLO2 function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|16525893|ISS go_component plasma membrane|GO:0005886|16525893|TAS go_component plasma membrane|GO:0005886||ISS go_process defense response|GO:0006952||ISS go_process cell death|GO:0008219||ISS go_process response to fungus|GO:0009620|10677553|IMP go_process defense response to fungus, incompatible interaction|GO:0009817|16732289|IMP go_process negative regulation of defense response|GO:0031348|16732289|IMP go_function calmodulin binding|GO:0005516||ISS product Seven transmembrane MLO family protein note MILDEW RESISTANCE LOCUS O 2 (MLO2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, response to fungus, negative regulation of defense response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G61560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11310.2p transcript_id AT1G11310.2 protein_id AT1G11310.2p transcript_id AT1G11310.2
At1g11320	chr1:003807241	0.0	W/3807241-3807351,3807463-3807930,3808033-3808728	AT1G11320.1 CDS GDSL esterase/lipase, putative [TAIR10] CDS gene_syn T28P6.3, T28P6_3 go_component mitochondrion|GO:0005739|16618929|IDA go_component plastid|GO:0009536|16618929|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11320.1p transcript_id AT1G11320.1 protein_id AT1G11320.1p transcript_id AT1G11320.1
At1g11330	chr1:003810372	0.0	W/3810372-3811689,3811784-3811891,3811979-3812172,3812259-3812469,3812568-3812805,3812876-3813026,3813108-3813416	AT1G11330.2 CDS S-locus lectin protein kinase family protein [TAIR10] CDS gene_syn T28P6.2, T28P6_2 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process recognition of pollen|GO:0048544||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function sugar binding|GO:0005529||IEA go_component plasma membrane|GO:0005886|16618929|IDA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product S-locus lectin protein kinase family protein note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-domain-1 13 (TAIR:AT1G11350.1). protein_id AT1G11330.2p transcript_id AT1G11330.2 protein_id AT1G11330.2p transcript_id AT1G11330.2
AT1G11330	chr1:003810372	0.0	W/3810372-3811689,3811784-3811891,3811979-3812172,3812259-3812469,3812568-3812805,3812876-3813053	AT1G11330.3 AT1G11330.3 CDS S-locus lectin protein kinase family protein
At1g11330	chr1:003810372	0.0	W/3810372-3811689,3811784-3811891,3811985-3812172,3812259-3812469,3812568-3812805,3812876-3813026,3813108-3813416	AT1G11330.1 CDS S-locus lectin protein kinase family protein [TAIR10] CDS gene_syn T28P6.2, T28P6_2 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process recognition of pollen|GO:0048544||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function sugar binding|GO:0005529||IEA go_component plasma membrane|GO:0005886|16618929|IDA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product S-locus lectin protein kinase family protein note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-domain-1 13 (TAIR:AT1G11350.1); Has 124566 Blast hits to 122714 proteins in 4439 species: Archae - 108; Bacteria - 13570; Metazoa - 45533; Fungi - 10903; Plants - 35507; Viruses - 467; Other Eukaryotes - 18478 (source: NCBI BLink). protein_id AT1G11330.1p transcript_id AT1G11330.1 protein_id AT1G11330.1p transcript_id AT1G11330.1
At1g11340	chr1:003814119	0.0	C/3814119-3814430,3814514-3814658,3814737-3814974,3815072-3815282,3815387-3815583,3815672-3815791,3815941-3817216	AT1G11340.1 CDS G-type lectin S-receptor-like Serine/Threonine-kinase [TAIR10] CDS gene_syn T28P6.1, T28P6_1 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process recognition of pollen|GO:0048544||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function sugar binding|GO:0005529||IEA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product S-locus lectin protein kinase family protein note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), EGF-like, type 3 (InterPro:IPR000742), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11410.1); Has 123060 Blast hits to 121063 proteins in 4656 species: Archae - 122; Bacteria - 13729; Metazoa - 45275; Fungi - 10148; Plants - 35343; Viruses - 433; Other Eukaryotes - 18010 (source: NCBI BLink). protein_id AT1G11340.1p transcript_id AT1G11340.1 protein_id AT1G11340.1p transcript_id AT1G11340.1
AT1G11340	chr1:003814502	0.0	C/3814502-3814658,3814737-3814974,3815072-3815282,3815387-3815583,3815672-3815791,3815941-3817420	AT1G11340.3 AT1G11340.3 CDS G-type lectin S-receptor-like Serine/Threonine-kinase
AT1G11340	chr1:003814733	0.0	C/3814733-3814974,3815072-3815282,3815387-3815583,3815672-3815791,3815941-3817420	AT1G11340.2 AT1G11340.2 CDS G-type lectin S-receptor-like Serine/Threonine-kinase
At1g11350	chr1:003817725	0.0	C/3817725-3818033,3818118-3818268,3818363-3818600,3818705-3818915,3819000-3819193,3819284-3819391,3819471-3820752	AT1G11350.1 CDS S-domain-1 13 [TAIR10] CDS gene_syn CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, CBRLK1, RKS2, S-domain-1 13, SD1-13, T23J18.2, T23J18_2 gene SD1-13 go_component plasma membrane|GO:0005886|19071125|IDA go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA go_function protein kinase activity|GO:0004672|18552232|IDA go_function protein serine/threonine kinase activity|GO:0004674|19071125|IDA go_function kinase activity|GO:0016301||ISS product S-domain-1 13 note S-domain-1 13 (SD1-13); CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.1); Has 125042 Blast hits to 123367 proteins in 4403 species: Archae - 116; Bacteria - 13667; Metazoa - 45426; Fungi - 11021; Plants - 35654; Viruses - 452; Other Eukaryotes - 18706 (source: NCBI BLink). protein_id AT1G11350.1p transcript_id AT1G11350.1 protein_id AT1G11350.1p transcript_id AT1G11350.1
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.1 CDS Adenine nucleotide alpha hydrolases-like superfamily protein [TAIR10] CDS gene_syn T23J18.35, T23J18_35 go_component plasma membrane|GO:0005886|17317660|IDA go_process response to stress|GO:0006950||IEA go_component cytosol|GO:0005829|18433157|IDA go_process response to stress|GO:0006950||ISS product Adenine nucleotide alpha hydrolases-like superfamily protein note Adenine nucleotide alpha hydrolases-like superfamily protein; INVOLVED IN: response to stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT4G27320.1); Has 1309 Blast hits to 1305 proteins in 243 species: Archae - 8; Bacteria - 416; Metazoa - 122; Fungi - 38; Plants - 720; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G11360.1p transcript_id AT1G11360.1 protein_id AT1G11360.1p transcript_id AT1G11360.1
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.2 CDS Adenine nucleotide alpha hydrolases-like superfamily protein [TAIR10] CDS gene_syn T23J18.35, T23J18_35 go_component plasma membrane|GO:0005886|17317660|IDA go_process response to stress|GO:0006950||IEA go_component cytosol|GO:0005829|18433157|IDA go_process response to stress|GO:0006950||ISS product Adenine nucleotide alpha hydrolases-like superfamily protein note Adenine nucleotide alpha hydrolases-like superfamily protein; INVOLVED IN: response to stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT4G27320.1); Has 1309 Blast hits to 1305 proteins in 243 species: Archae - 8; Bacteria - 416; Metazoa - 122; Fungi - 38; Plants - 720; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G11360.2p transcript_id AT1G11360.2 protein_id AT1G11360.2p transcript_id AT1G11360.2
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.3 CDS Adenine nucleotide alpha hydrolases-like superfamily protein [TAIR10] CDS gene_syn T23J18.35, T23J18_35 go_process response to stress|GO:0006950||IEA go_component cytosol|GO:0005829|18433157|IDA go_process response to stress|GO:0006950||ISS product Adenine nucleotide alpha hydrolases-like superfamily protein note Adenine nucleotide alpha hydrolases-like superfamily protein; INVOLVED IN: response to stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT4G27320.1); Has 1309 Blast hits to 1305 proteins in 243 species: Archae - 8; Bacteria - 416; Metazoa - 122; Fungi - 38; Plants - 720; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G11360.3p transcript_id AT1G11360.3 protein_id AT1G11360.3p transcript_id AT1G11360.3
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.4 CDS Adenine nucleotide alpha hydrolases-like superfamily protein [TAIR10] CDS gene_syn T23J18.35, T23J18_35 go_process response to stress|GO:0006950||IEA go_component cytosol|GO:0005829|18433157|IDA go_process response to stress|GO:0006950||ISS product Adenine nucleotide alpha hydrolases-like superfamily protein note Adenine nucleotide alpha hydrolases-like superfamily protein; INVOLVED IN: response to stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT4G27320.1). protein_id AT1G11360.4p transcript_id AT1G11360.4 protein_id AT1G11360.4p transcript_id AT1G11360.4
At1g11362	chr1:003824630	0.0	C/3824630-3825184	AT1G11362.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_process biological_process|GO:0008150||ND product Plant invertase/pectin methylesterase inhibitor superfamily protein note Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G50325.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11362.1p transcript_id AT1G11362.1 protein_id AT1G11362.1p transcript_id AT1G11362.1
At1g11370	chr1:003828098	0.0	C/3828098-3828585,3829970-3830234,3830832-3830945	AT1G11370.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn T23J18.3, T23J18_3 go_component cell wall|GO:0005618||IEA go_component endomembrane system|GO:0012505||IEA go_process cell wall modification|GO:0042545||IEA go_function pectinesterase activity|GO:0030599||IEA go_component plant-type cell wall|GO:0009505||ISS go_function pectinesterase activity|GO:0030599||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: methylesterase PCR A (TAIR:AT1G11580.1); Has 2636 Blast hits to 2592 proteins in 316 species: Archae - 8; Bacteria - 611; Metazoa - 1; Fungi - 192; Plants - 1799; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G11370.1p transcript_id AT1G11370.1 protein_id AT1G11370.1p transcript_id AT1G11370.1
At1g11380	chr1:003832695	0.0	W/3832695-3833008,3833167-3833230,3833338-3833502,3833609-3833674,3833766-3833921	AT1G11380.1 CDS PLAC8 family protein [TAIR10] CDS gene_syn T23J18.4, T23J18_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product PLAC8 family protein note PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G05350.1); Has 314 Blast hits to 313 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 8; Plants - 293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11380.1p transcript_id AT1G11380.1 protein_id AT1G11380.1p transcript_id AT1G11380.1
At1g11390	chr1:003834762	0.0	C/3834762-3834881,3835127-3835282,3835406-3835669,3835750-3837076,3837298-3837305	AT1G11390.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn T23J18.5, T23J18_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein kinase superfamily protein note Protein kinase superfamily protein; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G61640.1); Has 9400 Blast hits to 9333 proteins in 1787 species: Archae - 122; Bacteria - 4339; Metazoa - 436; Fungi - 531; Plants - 684; Viruses - 14; Other Eukaryotes - 3274 (source: NCBI BLink). protein_id AT1G11390.1p transcript_id AT1G11390.1 protein_id AT1G11390.1p transcript_id AT1G11390.1
At1g11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.1 CDS partner of Y14-MAGO [TAIR10] CDS gene_syn PYM, T23J18.7, T23J18_7, partner of Y14-MAGO gene PYM function The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus. go_component nucleoplasm|GO:0005654|16953428|IDA go_component nucleolus|GO:0005730|16953428|IDA go_component cytoplasm|GO:0005737|16953428|IDA go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|16953428|IPI product partner of Y14-MAGO note partner of Y14-MAGO (PYM); CONTAINS InterPro DOMAIN/s: Exon junction complex, Pym (InterPro:IPR015362); Has 344 Blast hits to 344 proteins in 136 species: Archae - 0; Bacteria - 3; Metazoa - 157; Fungi - 114; Plants - 46; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G11400.1p transcript_id AT1G11400.1 protein_id AT1G11400.1p transcript_id AT1G11400.1
At1g11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.2 CDS partner of Y14-MAGO [TAIR10] CDS gene_syn PYM, T23J18.7, T23J18_7, partner of Y14-MAGO gene PYM function The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus. go_component nucleoplasm|GO:0005654|16953428|IDA go_component nucleolus|GO:0005730|16953428|IDA go_component cytoplasm|GO:0005737|16953428|IDA go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|16953428|IPI product partner of Y14-MAGO note partner of Y14-MAGO (PYM); CONTAINS InterPro DOMAIN/s: Exon junction complex, Pym (InterPro:IPR015362); Has 344 Blast hits to 344 proteins in 136 species: Archae - 0; Bacteria - 3; Metazoa - 157; Fungi - 114; Plants - 46; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G11400.2p transcript_id AT1G11400.2 protein_id AT1G11400.2p transcript_id AT1G11400.2
At1g11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.3 CDS partner of Y14-MAGO [TAIR10] CDS gene_syn PYM, T23J18.7, T23J18_7, partner of Y14-MAGO gene PYM function The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus. go_component nucleoplasm|GO:0005654|16953428|IDA go_component nucleolus|GO:0005730|16953428|IDA go_component cytoplasm|GO:0005737|16953428|IDA go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|16953428|IPI product partner of Y14-MAGO note partner of Y14-MAGO (PYM); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleoplasm, nucleolus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exon junction complex, Pym (InterPro:IPR015362); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G11400.3p transcript_id AT1G11400.3 protein_id AT1G11400.3p transcript_id AT1G11400.3
AT1G11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.4 AT1G11400.4 CDS partner of Y14-MAGO
AT1G11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.5 AT1G11400.5 CDS partner of Y14-MAGO
AT1G11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.6 AT1G11400.6 CDS partner of Y14-MAGO
AT1G11410	chr1:003841195	0.0	W/3841195-3841209,3841373-3842570,3842654-3842782,3842872-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.3 AT1G11410.3 CDS S-locus lectin protein kinase family protein
AT1G11410	chr1:003841265	0.0	W/3841265-3842570,3842654-3842782,3842872-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.4 AT1G11410.4 CDS S-locus lectin protein kinase family protein
At1g11410	chr1:003841286	0.0	W/3841286-3842570,3842654-3842782,3842872-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.1 CDS S-locus lectin protein kinase family protein [TAIR10] CDS gene_syn T23J18.8, T23J18_8 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process recognition of pollen|GO:0048544||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function sugar binding|GO:0005529||IEA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product S-locus lectin protein kinase family protein note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine/threonine-protein kinase domain (InterPro:IPR002290), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11340.1); Has 122302 Blast hits to 120413 proteins in 4701 species: Archae - 118; Bacteria - 13948; Metazoa - 44921; Fungi - 9999; Plants - 35002; Viruses - 441; Other Eukaryotes - 17873 (source: NCBI BLink). protein_id AT1G11410.1p transcript_id AT1G11410.1 protein_id AT1G11410.1p transcript_id AT1G11410.1
AT1G11410	chr1:003841631	0.0	W/3841631-3842570,3842654-3842782,3842872-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.2 AT1G11410.2 CDS S-locus lectin protein kinase family protein
At1g11420	chr1:003844581	0.0	C/3844581-3845266,3845391-3845475,3845543-3845662,3845752-3845838,3845944-3846345,3846438-3846872	AT1G11420.1 CDS agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2) [TAIR10] CDS gene_syn ATDUF2, DOMAIN OF UNKNOWN FUNCTION 724 2, DUF2, T23J18.9, T23J18_9 gene DUF2 function Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND product DOMAIN OF UNKNOWN FUNCTION 724 2 note DOMAIN OF UNKNOWN FUNCTION 724 2 (DUF2); FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 603 Blast hits to 525 proteins in 93 species: Archae - 19; Bacteria - 36; Metazoa - 149; Fungi - 17; Plants - 302; Viruses - 1; Other Eukaryotes - 79 (source: NCBI BLink). protein_id AT1G11420.1p transcript_id AT1G11420.1 protein_id AT1G11420.1p transcript_id AT1G11420.1
At1g11430	chr1:003847273	0.0	W/3847273-3847634,3848411-3848508,3848606-3848671,3848766-3848938	AT1G11430.1 CDS plastid developmental protein DAG, putative [TAIR10] CDS gene_syn T23J18.10, T23J18_10 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA product plastid developmental protein DAG, putative note plastid developmental protein DAG, putative; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT3G06790.2); Has 252 Blast hits to 229 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11430.1p transcript_id AT1G11430.1 protein_id AT1G11430.1p transcript_id AT1G11430.1
At1g11440	chr1:003849418	0.0	W/3849418-3850509	AT1G11440.1 CDS hypothetical protein [TAIR10] CDS gene_syn T23J18.11, T23J18_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 19337 Blast hits to 8589 proteins in 488 species: Archae - 26; Bacteria - 641; Metazoa - 7852; Fungi - 2167; Plants - 955; Viruses - 616; Other Eukaryotes - 7080 (source: NCBI BLink). protein_id AT1G11440.1p transcript_id AT1G11440.1 protein_id AT1G11440.1p transcript_id AT1G11440.1
AT1G11450	chr1:003853317	0.0	W/3853317-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.3 AT1G11450.3 CDS nodulin MtN21 /EamA-like transporter family protein
AT1G11450	chr1:003853317	0.0	W/3853317-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855046	AT1G11450.4 AT1G11450.4 CDS nodulin MtN21 /EamA-like transporter family protein
AT1G11450	chr1:003853449	0.0	W/3853449-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.5 AT1G11450.5 CDS nodulin MtN21 /EamA-like transporter family protein
At1g11450	chr1:003853470	0.0	W/3853470-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.2 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn T23J18.12, T23J18_12 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1); Has 2267 Blast hits to 2262 proteins in 302 species: Archae - 12; Bacteria - 1007; Metazoa - 4; Fungi - 9; Plants - 1191; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G11450.2p transcript_id AT1G11450.2 protein_id AT1G11450.2p transcript_id AT1G11450.2
At1g11450	chr1:003854005	0.0	W/3854005-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.1 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn T23J18.12, T23J18_12 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1); Has 1836 Blast hits to 1833 proteins in 198 species: Archae - 4; Bacteria - 635; Metazoa - 4; Fungi - 2; Plants - 1171; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT1G11450.1p transcript_id AT1G11450.1 protein_id AT1G11450.1p transcript_id AT1G11450.1
At1g11460	chr1:003857005	0.0	W/3857005-3857207,3857370-3857432,3857595-3857711,3858222-3858624,3858916-3859067,3859193-3859268	AT1G11460.1 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn T23J18.13, T23J18_13 go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G01070.1); Has 2512 Blast hits to 2503 proteins in 352 species: Archae - 22; Bacteria - 1127; Metazoa - 4; Fungi - 2; Plants - 1206; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). protein_id AT1G11460.1p transcript_id AT1G11460.1 protein_id AT1G11460.1p transcript_id AT1G11460.1
At1g11470	chr1:003859874	0.0	C/3859874-3860119,3860227-3860288,3860378-3860522	AT1G11470.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn T23J18.14, T23J18_14 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02370.1); Has 31 Blast hits to 31 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11470.1p transcript_id AT1G11470.1 protein_id AT1G11470.1p transcript_id AT1G11470.1
At1g11475	chr1:003862520	0.0	W/3862520-3862555,3862759-3862817,3863584-3863678,3863780-3863805	AT1G11475.1 CDS RNA polymerases N / 8 kDa subunit [TAIR10] CDS gene_syn NRPB10, NRPD10, NRPE10, T23J18.30 gene NRPB10 function Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB10. go_process transcription, DNA-dependent|GO:0006351||IEA go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_function DNA-directed RNA polymerase activity|GO:0003899||IEA go_function zinc ion binding|GO:0008270||IEA go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI go_process transcription|GO:0006350||ISS go_function DNA-directed RNA polymerase activity|GO:0003899||ISS product RNA polymerases N / 8 kDa subunit note NRPB10; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8kDa subunit (InterPro:IPR000268), RNA polymerases, subunit N, zinc binding site (InterPro:IPR020789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: RNA polymerases N / 8 kDa subunit (TAIR:AT1G61700.1); Has 941 Blast hits to 941 proteins in 324 species: Archae - 263; Bacteria - 0; Metazoa - 146; Fungi - 184; Plants - 72; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink). protein_id AT1G11475.1p transcript_id AT1G11475.1 protein_id AT1G11475.1p transcript_id AT1G11475.1
At1g11480	chr1:003864368	0.0	C/3864368-3864827,3864953-3865014,3865100-3865136,3865256-3865434,3865529-3866435,3866655-3866707	AT1G11480.2 CDS eukaryotic translation initiation factor-related [TAIR10] CDS gene_syn T23J18.15, T23J18_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product eukaryotic translation initiation factor-related note eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 398 Blast hits to 374 proteins in 109 species: Archae - 0; Bacteria - 21; Metazoa - 180; Fungi - 52; Plants - 82; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). protein_id AT1G11480.2p transcript_id AT1G11480.2 protein_id AT1G11480.2p transcript_id AT1G11480.2
At1g11480	chr1:003864368	0.0	C/3864368-3864827,3864953-3865014,3865100-3865136,3865256-3865434,3865529-3866435,3866659-3866750	AT1G11480.1 CDS eukaryotic translation initiation factor-related [TAIR10] CDS gene_syn T23J18.15, T23J18_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product eukaryotic translation initiation factor-related note eukaryotic translation initiation factor-related; Has 394 Blast hits to 370 proteins in 111 species: Archae - 0; Bacteria - 23; Metazoa - 177; Fungi - 53; Plants - 82; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). protein_id AT1G11480.1p transcript_id AT1G11480.1 protein_id AT1G11480.1p transcript_id AT1G11480.1
At1g11482	chr1:003867405	0.0	C/3867405-3867692,3867739-3868443,3868592-3868649,3868799-3868870	AT1G11482.1 [TAIR10] pseudogene
At1g11490	chr1:003868884	0.0	C/3868884-3869527,3869612-3870065	AT1G11490.1 CDS zinc finger (C2H2 type) family protein [TAIR10] CDS gene_syn T23J18.16, T23J18_16 go_component intracellular|GO:0005622||IEA go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product zinc finger (C2H2 type) family protein note zinc finger (C2H2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G27240.1); Has 263 Blast hits to 257 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 33; Plants - 228; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G11490.1p transcript_id AT1G11490.1 protein_id AT1G11490.1p transcript_id AT1G11490.1
AT1G11490	chr1:003868884	0.0	C/3868884-3869527,3869612-3870065	AT1G11490.2 AT1G11490.2 CDS zinc finger (C2H2 type) family protein
AT1G11500	chr1:003870818	0.0	W/3870818-3870931,3871018-3871244,3871342-3871570	AT1G11500.3 AT1G11500.3 CDS transmembrane protein, putative (DUF1218)
At1g11500	chr1:003870833	0.0	W/3870833-3870931,3871018-3871244,3871342-3871570	AT1G11500.1 CDS transmembrane protein, putative (DUF1218) [TAIR10] CDS gene_syn T23J18.31, T23J18_31 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1218) note Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G21310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11500.1p transcript_id AT1G11500.1 protein_id AT1G11500.1p transcript_id AT1G11500.1
AT1G11500	chr1:003871003	0.0	W/3871003-3871244,3871342-3871570	AT1G11500.2 AT1G11500.2 CDS transmembrane protein, putative (DUF1218)
AT1G11510	chr1:003871778	0.0	C/3871778-3872488,3872576-3872836	AT1G11510.2 AT1G11510.2 CDS DNA-binding storekeeper protein-related transcriptional regulator
At1g11510	chr1:003871778	0.0	C/3871778-3872836	AT1G11510.1 CDS DNA-binding storekeeper protein-related transcriptional regulator [TAIR10] CDS gene_syn T23J18.17, T23J18_17 go_function transcription regulator activity|GO:0030528|12535344|TAS product DNA-binding storekeeper protein-related transcriptional regulator note DNA-binding storekeeper protein-related transcriptional regulator; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT1G61730.1); Has 6244 Blast hits to 2746 proteins in 297 species: Archae - 0; Bacteria - 3717; Metazoa - 876; Fungi - 377; Plants - 483; Viruses - 20; Other Eukaryotes - 771 (source: NCBI BLink). protein_id AT1G11510.1p transcript_id AT1G11510.1 protein_id AT1G11510.1p transcript_id AT1G11510.1
At1g11520	chr1:003873029	0.0	W/3873029-3873619	AT1G11520.1 CDS pliceosome associated protein-related [TAIR10] CDS gene_syn T23J18.18, T23J18_18 go_component chloroplast|GO:0009507|18431481|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product pliceosome associated protein-related note pliceosome associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: proline-rich spliceosome-associated (PSP) family protein (TAIR:AT4G21660.2); Has 139 Blast hits to 132 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G11520.1p transcript_id AT1G11520.1 protein_id AT1G11520.1p transcript_id AT1G11520.1
At1g11530	chr1:003874518	0.0	W/3874518-3874595,3874872-3874994,3875156-3875311	AT1G11530.1 CDS C-terminal cysteine residue is changed to a serine 1 [TAIR10] CDS gene_syn ATCXXS1, C-terminal cysteine residue is changed to a serine 1, CXXS1 gene CXXS1 function Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity. go_component cytosol|GO:0005829|18384502|IDA go_process protein thiol-disulfide exchange|GO:0006467|18384502|IDA go_function protein disulfide isomerase activity|GO:0003756|18384502|IDA product C-terminal cysteine residue is changed to a serine 1 note C-terminal cysteine residue is changed to a serine 1 (CXXS1); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 1 (TAIR:AT3G51030.1); Has 9365 Blast hits to 9347 proteins in 2322 species: Archae - 165; Bacteria - 5071; Metazoa - 947; Fungi - 584; Plants - 1098; Viruses - 0; Other Eukaryotes - 1500 (source: NCBI BLink). protein_id AT1G11530.1p transcript_id AT1G11530.1 protein_id AT1G11530.1p transcript_id AT1G11530.1
At1g11540	chr1:003875476	0.0	C/3875476-3875784,3875880-3876020,3876116-3876265,3876470-3876973	AT1G11540.1 CDS Sulfite exporter TauE/SafE family protein [TAIR10] CDS gene_syn T23J18.20, T23J18_20 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Sulfite exporter TauE/SafE family protein note Sulfite exporter TauE/SafE family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781); BEST Arabidopsis thaliana protein match is: Sulfite exporter TauE/SafE family protein (TAIR:AT1G61740.1); Has 3200 Blast hits to 2964 proteins in 743 species: Archae - 110; Bacteria - 1734; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink). protein_id AT1G11540.1p transcript_id AT1G11540.1 protein_id AT1G11540.1p transcript_id AT1G11540.1
AT1G11540	chr1:003875476	0.0	C/3875476-3875784,3875880-3876020,3876116-3876265,3876470-3877222	AT1G11540.2 AT1G11540.2 CDS Sulfite exporter TauE/SafE family protein
At1g11545	chr1:003878689	0.0	C/3878689-3879097,3879508-3879710,3879809-3879909,3880082-3880286	AT1G11545.1 CDS xyloglucan endotransglucosylase/hydrolase 8 [TAIR10] CDS gene_syn T23J18.21, T23J18_21, XTH8, xyloglucan endotransglucosylase/hydrolase 8 gene XTH8 go_component cell wall|GO:0005618||IEA go_component endomembrane system|GO:0012505||IEA go_component apoplast|GO:0048046||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_process cellular glucan metabolic process|GO:0006073||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS product xyloglucan endotransglucosylase/hydrolase 8 note xyloglucan endotransglucosylase/hydrolase 8 (XTH8); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 7 (TAIR:AT4G37800.1); Has 2134 Blast hits to 2114 proteins in 302 species: Archae - 0; Bacteria - 267; Metazoa - 0; Fungi - 408; Plants - 1375; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink). protein_id AT1G11545.1p transcript_id AT1G11545.1 protein_id AT1G11545.1p transcript_id AT1G11545.1
At1g11550	chr1:003881529	0.0	W/3881529-3881608	AT1G11550.1 [TAIR10] tRNA gene_syn 51678.TRNA-LEU-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Leu (anticodon: TAG) transcript_id AT1G11550.1
At1g11560	chr1:003881788	0.0	W/3881788-3882819	AT1G11560.1 CDS Oligosaccharyltransferase complex/magnesium transporter family protein [TAIR10] CDS gene_syn T23J18.22, T23J18_22 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function oligosaccharide transmembrane transporter activity|GO:0015157||ISS product Oligosaccharyltransferase complex/magnesium transporter family protein note Oligosaccharyltransferase complex/magnesium transporter family protein; FUNCTIONS IN: oligosaccharide transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Magnesium transporter protein 1 (InterPro:IPR006844), Oligosaccharyltransferase complex/magnesium transporter (InterPro:IPR021149); BEST Arabidopsis thaliana protein match is: Oligosaccharyltransferase complex/magnesium transporter family protein (TAIR:AT1G61790.1); Has 312 Blast hits to 312 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT1G11560.1p transcript_id AT1G11560.1 protein_id AT1G11560.1p transcript_id AT1G11560.1
AT1G11570	chr1:003883217	0.0	W/3883217-3883603,3883882-3883956	AT1G11570.3 AT1G11570.3 CDS NTF2-like
AT1G11570	chr1:003883217	0.0	W/3883217-3883663	AT1G11570.4 AT1G11570.4 CDS NTF2-like
At1g11570	chr1:003883280	0.0	W/3883280-3883603,3883882-3883956	AT1G11570.2 CDS NTF2-like [TAIR10] CDS gene_syn NTF2-like, NTL, T23J18.32, T23J18_32 gene NTL go_component intracellular|GO:0005622||IEA go_process transport|GO:0006810||IEA go_component intracellular|GO:0005622||ISS go_component nucleus|GO:0005634||ISS go_process protein import into nucleus|GO:0006606||ISS go_function protein transporter activity|GO:0008565||ISS product NTF2-like note NTF2-like (NTL); FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: nucleus, intracellular; EXPRESSED IN: leaf whorl, sperm cell, flower, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2B (TAIR:AT1G27970.1); Has 1082 Blast hits to 1082 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 586; Fungi - 199; Plants - 205; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). protein_id AT1G11570.2p transcript_id AT1G11570.2 protein_id AT1G11570.2p transcript_id AT1G11570.2
At1g11570	chr1:003883280	0.0	W/3883280-3883663	AT1G11570.1 CDS NTF2-like [TAIR10] CDS gene_syn NTF2-like, NTL, T23J18.32, T23J18_32 gene NTL go_component intracellular|GO:0005622||IEA go_process transport|GO:0006810||IEA go_component intracellular|GO:0005622||ISS go_component nucleus|GO:0005634||ISS go_process protein import into nucleus|GO:0006606||ISS go_function protein transporter activity|GO:0008565||ISS product NTF2-like note NTF2-like (NTL); FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: nucleus, intracellular; EXPRESSED IN: leaf whorl, sperm cell, flower, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2A (TAIR:AT1G27310.1); Has 836 Blast hits to 836 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 487; Fungi - 161; Plants - 110; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). protein_id AT1G11570.1p transcript_id AT1G11570.1 protein_id AT1G11570.1p transcript_id AT1G11570.1
At1g11572	chr1:003884455	0.0	W/3884455-3884724	AT1G11572.1 CDS Plant thionin family protein [TAIR10] CDS function Encodes a Plant thionin family protein go_component endomembrane system|GO:0012505||IEA product Plant thionin family protein note Plant thionin family protein; LOCATED IN: endomembrane system; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11572.1p transcript_id AT1G11572.1 protein_id AT1G11572.1p transcript_id AT1G11572.1
AT1G11580	chr1:003888667	0.0	W/3888667-3889446,3889601-3889865,3889958-3890649	AT1G11580.2 AT1G11580.2 CDS methylesterase PCR A
At1g11580	chr1:003888730	0.0	W/3888730-3889446,3889601-3889865,3889958-3890649	AT1G11580.1 CDS methylesterase PCR A [TAIR10] CDS gene_syn ATPMEPCRA, PMEPCRA, T23J18.24, T23J18_24, methylesterase PCR A gene PMEPCRA go_component cell wall|GO:0005618|14595688|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_process cell wall modification|GO:0042545||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_component plant-type cell wall|GO:0009505||ISS go_function pectinesterase activity|GO:0030599||ISS product methylesterase PCR A note methylesterase PCR A (PMEPCRA); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G11590.1); Has 3127 Blast hits to 3075 proteins in 484 species: Archae - 6; Bacteria - 913; Metazoa - 1; Fungi - 197; Plants - 1984; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). protein_id AT1G11580.1p transcript_id AT1G11580.1 protein_id AT1G11580.1p transcript_id AT1G11580.1
At1g11590	chr1:003892634	0.0	W/3892634-3893257,3893563-3893827,3893935-3894620	AT1G11590.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily [TAIR10] CDS gene_syn T23J18.25, T23J18_25 go_component cell wall|GO:0005618||IEA go_component endomembrane system|GO:0012505||IEA go_process cell wall modification|GO:0042545||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_component plant-type cell wall|GO:0009505||ISS go_function pectinesterase activity|GO:0030599||ISS product Plant invertase/pectin methylesterase inhibitor superfamily note Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G03930.1); Has 2848 Blast hits to 2802 proteins in 417 species: Archae - 6; Bacteria - 792; Metazoa - 1; Fungi - 192; Plants - 1830; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). protein_id AT1G11590.1p transcript_id AT1G11590.1 protein_id AT1G11590.1p transcript_id AT1G11590.1
AT1G11591	chr1:003895130	0.0	W/3895130-3895268,3895312-3895511,3895631-3895919,3896012-3896019	AT1G11591.1 AT1G11591.1 CDS hypothetical protein
At1g11592	chr1:003895179	0.0	C/3895179-3895538,3895625-3895700,3895802-3895848,3895935-3896261,3896369-3896917	AT1G11592.2 [TAIR10] ncRNA function Unknown gene go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G11592.2
At1g11592	chr1:003895268	0.0	C/3895268-3895536,3895625-3895700,3895802-3895845,3895935-3896090,3896212-3896261,3896369-3896433,3896522-3896934	AT1G11592.1 [TAIR10] ncRNA function Unknown gene go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G11592.1
At1g11593	chr1:003898002	0.0	W/3898002-3898571	AT1G11593.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_process biological_process|GO:0008150||ND product Plant invertase/pectin methylesterase inhibitor superfamily protein note Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT3G27999.1); Has 71 Blast hits to 67 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11593.1p transcript_id AT1G11593.1 protein_id AT1G11593.1p transcript_id AT1G11593.1
At1g11595	chr1:003898631	0.0	W/3898631-3899699	AT1G11595.1 [TAIR10] pseudogene
At1g11600	chr1:003902090	0.0	W/3902090-3903622	AT1G11600.1 CDS cytochrome P450, family 77, subfamily B, polypeptide 1 [TAIR10] CDS gene_syn cytochrome P450, family 77, subfamily B, polypeptide 1, CYP77B1, F25C20.25, F25C20_25 gene CYP77B1 function member of CYP77B go_component endomembrane system|GO:0012505||IEA go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 77, subfamily B, polypeptide 1 note cytochrome P450, family 77, subfamily B, polypeptide 1 (CYP77B1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 77, subfamily A, polypeptide 9 (TAIR:AT5G04630.1); Has 32592 Blast hits to 32103 proteins in 1633 species: Archae - 48; Bacteria - 3170; Metazoa - 12143; Fungi - 6852; Plants - 9226; Viruses - 3; Other Eukaryotes - 1150 (source: NCBI BLink). protein_id AT1G11600.1p transcript_id AT1G11600.1 protein_id AT1G11600.1p transcript_id AT1G11600.1
At1g11608	chr1:003906266	0.0	W/3906266-3906520	AT1G11608.1 CDS F-box associated ubiquitination effector family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box associated ubiquitination effector family protein note F-box associated ubiquitination effector family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G11620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11608.1p transcript_id AT1G11608.1 protein_id AT1G11608.1p transcript_id AT1G11608.1
At1g11610	chr1:003906983	0.0	C/3906983-3907051,3907509-3907790,3907885-3908169,3908260-3908751,3908905-3909291	AT1G11610.2 CDS cytochrome P450, family 71, subfamily A, polypeptide 18 [TAIR10] CDS gene_syn cytochrome P450, family 71, subfamily A, polypeptide 18, CYP71A18, F25C20.24, F25C20_24 gene CYP71A18 function putative cytochrome P450 go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 71, subfamily A, polypeptide 18 note cytochrome P450, family 71, subfamily A, polypeptide 18 (CYP71A18); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 13 (TAIR:AT2G30770.1). protein_id AT1G11610.2p transcript_id AT1G11610.2 protein_id AT1G11610.2p transcript_id AT1G11610.2
At1g11610	chr1:003907461	0.0	C/3907461-3907790,3907885-3908169,3908260-3908751,3908905-3909291	AT1G11610.1 CDS cytochrome P450, family 71, subfamily A, polypeptide 18 [TAIR10] CDS gene_syn cytochrome P450, family 71, subfamily A, polypeptide 18, CYP71A18, F25C20.24, F25C20_24 gene CYP71A18 function putative cytochrome P450 go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 71, subfamily A, polypeptide 18 note cytochrome P450, family 71, subfamily A, polypeptide 18 (CYP71A18); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 13 (TAIR:AT2G30770.1); Has 34927 Blast hits to 34697 proteins in 1764 species: Archae - 51; Bacteria - 4686; Metazoa - 11898; Fungi - 7343; Plants - 9704; Viruses - 3; Other Eukaryotes - 1242 (source: NCBI BLink). protein_id AT1G11610.1p transcript_id AT1G11610.1 protein_id AT1G11610.1p transcript_id AT1G11610.1
At1g11620	chr1:003910833	0.0	W/3910833-3911924	AT1G11620.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS gene_syn F25C20.23, F25C20_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G31510.1); Has 2174 Blast hits to 2137 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2172; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G11620.1p transcript_id AT1G11620.1 protein_id AT1G11620.1p transcript_id AT1G11620.1
At1g11630	chr1:003913168	0.0	C/3913168-3914385	AT1G11630.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F25C20.22, F25C20_22 go_component mitochondrion|GO:0005739|14671022|IDA go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide repeat 336 (TAIR:AT1G61870.1); Has 27426 Blast hits to 8035 proteins in 245 species: Archae - 4; Bacteria - 14; Metazoa - 220; Fungi - 290; Plants - 26279; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). protein_id AT1G11630.1p transcript_id AT1G11630.1 protein_id AT1G11630.1p transcript_id AT1G11630.1
At1g11640	chr1:003914629	0.0	C/3914629-3914700	AT1G11640.1 [TAIR10] tRNA gene_syn 51344.TRNA-TRP-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Trp (anticodon: CCA) transcript_id AT1G11640.1
At1g11650	chr1:003914895	0.0	W/3914895-3915155,3915428-3915893,3917021-3917079,3917167-3917297,3917416-3917512,3917738-3917941	AT1G11650.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn ATRBP45B, F25C20.21, F25C20_21, RBP45B gene RBP45B go_function RNA binding|GO:0003723|11105760|ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 29660 Blast hits to 18296 proteins in 811 species: Archae - 14; Bacteria - 2273; Metazoa - 15265; Fungi - 3531; Plants - 5870; Viruses - 0; Other Eukaryotes - 2707 (source: NCBI BLink). protein_id AT1G11650.2p transcript_id AT1G11650.2 protein_id AT1G11650.2p transcript_id AT1G11650.2
At1g11650	chr1:003914895	0.0	W/3914895-3915155,3915428-3915893,3917021-3917079,3917167-3917301	AT1G11650.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn ATRBP45B, F25C20.21, F25C20_21, RBP45B gene RBP45B go_function RNA binding|GO:0003723|11105760|ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 20995 Blast hits to 13178 proteins in 763 species: Archae - 6; Bacteria - 1690; Metazoa - 10875; Fungi - 2403; Plants - 4255; Viruses - 0; Other Eukaryotes - 1766 (source: NCBI BLink). protein_id AT1G11650.1p transcript_id AT1G11650.1 protein_id AT1G11650.1p transcript_id AT1G11650.1
At1g11655	chr1:003919338	0.0	W/3919338-3919679	AT1G11655.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11655.1p transcript_id AT1G11655.1 protein_id AT1G11655.1p transcript_id AT1G11655.1
At1g11660	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.1 CDS heat shock protein 70 (Hsp 70) family protein [TAIR10] CDS gene_syn F25C20.19, F25C20_19 go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product heat shock protein 70 (Hsp 70) family protein note heat shock protein 70 (Hsp 70) family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT1G79920.1); Has 25020 Blast hits to 24886 proteins in 4391 species: Archae - 151; Bacteria - 11311; Metazoa - 3542; Fungi - 1480; Plants - 1013; Viruses - 97; Other Eukaryotes - 7426 (source: NCBI BLink). protein_id AT1G11660.1p transcript_id AT1G11660.1 protein_id AT1G11660.1p transcript_id AT1G11660.1
AT1G11660	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.3 AT1G11660.3 CDS heat shock protein 70 (Hsp 70) family protein
AT1G11660	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.4 AT1G11660.4 CDS heat shock protein 70 (Hsp 70) family protein
AT1G11660	chr1:003921167	0.0	W/3921167-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.2 AT1G11660.2 CDS heat shock protein 70 (Hsp 70) family protein
At1g11670	chr1:003928520	0.0	C/3928520-3928582,3928700-3928786,3928887-3929005,3929096-3929334,3929437-3929493,3930276-3930907,3931168-3931482	AT1G11670.1 CDS MATE efflux family protein [TAIR10] CDS gene_syn F25C20.18, F25C20_18 go_component membrane|GO:0016020||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_process drug transmembrane transport|GO:0006855||IEA go_process transmembrane transport|GO:0055085||IEA go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020||ISS go_function transporter activity|GO:0005215||ISS go_function antiporter activity|GO:0015297||ISS product MATE efflux family protein note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, N-terminal protein myristoylation, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G61890.1); Has 11525 Blast hits to 11473 proteins in 2135 species: Archae - 258; Bacteria - 8318; Metazoa - 144; Fungi - 328; Plants - 1428; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink). protein_id AT1G11670.1p transcript_id AT1G11670.1 protein_id AT1G11670.1p transcript_id AT1G11670.1
At1g11680	chr1:003938925	0.0	W/3938925-3939398,3939593-3940585	AT1G11680.1 CDS CYTOCHROME P450 51G1 [TAIR10] CDS gene_syn CYP51, CYP51A2, CYP51G1, CYTOCHROME P450 51, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1, EMB1738, F25C20.17, F25C20_17, embryo defective 1738 gene CYP51G1 function putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. go_component plasma membrane|GO:0005886|17317660|IDA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process embryo development ending in seed dormancy|GO:0009793||NAS go_process sterol biosynthetic process|GO:0016126|11437378|TAS go_process sterol biosynthetic process|GO:0016126|16169959|IMP go_function sterol 14-demethylase activity|GO:0008398|16169959|TAS go_function oxygen binding|GO:0019825||ISS product CYTOCHROME P450 51G1 note CYTOCHROME P450 51G1 (CYP51G1); FUNCTIONS IN: sterol 14-demethylase activity, oxygen binding; INVOLVED IN: sterol biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 707, subfamily A, polypeptide 4 (TAIR:AT3G19270.1); Has 30265 Blast hits to 30215 proteins in 1662 species: Archae - 71; Bacteria - 5605; Metazoa - 9913; Fungi - 5125; Plants - 8048; Viruses - 6; Other Eukaryotes - 1497 (source: NCBI BLink). protein_id AT1G11680.1p transcript_id AT1G11680.1 protein_id AT1G11680.1p transcript_id AT1G11680.1
At1g11684	chr1:003941103	0.0	C/3941103-3941300	AT1G11684.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11684.1p transcript_id AT1G11684.1 protein_id AT1G11684.1p transcript_id AT1G11684.1
At1g11690	chr1:003941469	0.0	W/3941469-3942212	AT1G11690.1 CDS BRANCHLESS TRICHOME-like protein [TAIR10] CDS gene_syn F25C20.16, F25C20_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 5959 Blast hits to 4807 proteins in 476 species: Archae - 156; Bacteria - 436; Metazoa - 2789; Fungi - 309; Plants - 336; Viruses - 9; Other Eukaryotes - 1924 (source: NCBI BLink). protein_id AT1G11690.1p transcript_id AT1G11690.1 protein_id AT1G11690.1p transcript_id AT1G11690.1
At1g11700	chr1:003945852	0.0	W/3945852-3946457	AT1G11700.1 CDS senescence regulator (Protein of unknown function, DUF584) [TAIR10] CDS gene_syn F25C20.15, F25C20_15 go_component chloroplast|GO:0009507|15028209|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF584 note Protein of unknown function, DUF584; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT1G61930.1); Has 334 Blast hits to 333 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 328; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G11700.1p transcript_id AT1G11700.1 protein_id AT1G11700.1p transcript_id AT1G11700.1
AT1G11710	chr1:003948886	0.0	W/3948886-3949265,3949353-3950859	AT1G11710.2 AT1G11710.2 CDS Pentatricopeptide repeat (PPR) superfamily protein
At1g11710	chr1:003948886	0.0	W/3948886-3950859	AT1G11710.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F25C20.14, F25C20_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 45515 Blast hits to 13277 proteins in 292 species: Archae - 2; Bacteria - 53; Metazoa - 430; Fungi - 426; Plants - 43316; Viruses - 0; Other Eukaryotes - 1288 (source: NCBI BLink). protein_id AT1G11710.1p transcript_id AT1G11710.1 protein_id AT1G11710.1p transcript_id AT1G11710.1
At1g11720	chr1:003951597	0.0	W/3951597-3951713,3952345-3952408,3952485-3953618,3953739-3953953,3954080-3954353,3954436-3954611,3954691-3954798,3954886-3954995,3955094-3955199,3955307-3955477,3955597-3955725,3955811-3955993,3956072-3956203,3956297-3956408,3956504-3956627,3956711-3956840	AT1G11720.2 CDS starch synthase 3 [TAIR10] CDS gene_syn ATSS3, F25C20.13, F25C20_13, SS3, STARCH SYNTHASE III, starch synthase 3 gene SS3 function Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD). go_process starch biosynthetic process|GO:0019252|15908598|IMP go_function starch synthase activity|GO:0009011|15908598|IMP go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product starch synthase 3 note starch synthase 3 (SS3); CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1). protein_id AT1G11720.2p transcript_id AT1G11720.2 protein_id AT1G11720.2p transcript_id AT1G11720.2
At1g11720	chr1:003952460	0.0	W/3952460-3953618,3953739-3953953,3954080-3954353,3954436-3954611,3954691-3954798,3954886-3954995,3955094-3955199,3955307-3955477,3955597-3955725,3955811-3955993,3956072-3956203,3956297-3956408,3956504-3956627,3956711-3956840	AT1G11720.1 CDS starch synthase 3 [TAIR10] CDS gene_syn ATSS3, F25C20.13, F25C20_13, SS3, STARCH SYNTHASE III, starch synthase 3 gene SS3 function Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD). go_component chloroplast|GO:0009507|18431481|IDA go_process starch biosynthetic process|GO:0019252|15908598|IMP go_function starch synthase activity|GO:0009011|15908598|IMP go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product starch synthase 3 note starch synthase 3 (SS3); FUNCTIONS IN: starch synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: starch biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 8453 Blast hits to 8330 proteins in 2963 species: Archae - 164; Bacteria - 3762; Metazoa - 19; Fungi - 103; Plants - 3720; Viruses - 1; Other Eukaryotes - 684 (source: NCBI BLink). protein_id AT1G11720.1p transcript_id AT1G11720.1 protein_id AT1G11720.1p transcript_id AT1G11720.1
At1g11730	chr1:003957473	0.0	W/3957473-3957588,3958169-3958253,3958333-3958361,3958458-3958651,3958735-3958798,3958905-3958977,3959063-3959183,3959266-3959353,3959457-3959582,3959682-3959791,3959965-3960113	AT1G11730.1 CDS Galactosyltransferase family protein [TAIR10] CDS gene_syn F25C20.12, F25C20_12 go_component membrane|GO:0016020||IEA go_process protein amino acid glycosylation|GO:0006486||IEA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS product Galactosyltransferase family protein note Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G05170.2); Has 1454 Blast hits to 1447 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 839; Fungi - 2; Plants - 587; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). protein_id AT1G11730.1p transcript_id AT1G11730.1 protein_id AT1G11730.1p transcript_id AT1G11730.1
At1g11735	chr1:003961348	0.0	C/3961348-3961464	AT1G11735.1 [TAIR10] miRNA gene_syn MIR171B, microRNA171B gene MIR171B function Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGAGCCGUGCCAAUAUCACG product MIR171B (microRNA171B); miRNA transcript_id AT1G11735.1
At1g11740	chr1:003963317	0.0	C/3963317-3963563,3963632-3963722,3964880-3965210,3965559-3966824	AT1G11740.1 CDS ankyrin repeat family protein [TAIR10] CDS gene_syn F25C20.11, F25C20_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product ankyrin repeat family protein note ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G62050.1); Has 1132 Blast hits to 1026 proteins in 130 species: Archae - 4; Bacteria - 26; Metazoa - 550; Fungi - 29; Plants - 425; Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink). protein_id AT1G11740.1p transcript_id AT1G11740.1 protein_id AT1G11740.1p transcript_id AT1G11740.1
At1g11750	chr1:003967609	0.0	W/3967609-3967703,3967786-3967847,3968007-3968061,3968132-3968185,3968347-3968548,3968632-3968697,3968784-3968924,3969028-3969081,3969208-3969300,3969488-3969535	AT1G11750.2 CDS CLP protease proteolytic subunit 6 [TAIR10] CDS gene_syn ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT, CLP protease proteolytic subunit 6, CLPP6, F25C20.10, F25C20_10, NCLPP1, NCLPP6, NUCLEAR-ENCODED CLPP 1 gene CLPP6 function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). go_function serine-type endopeptidase activity|GO:0004252||IEA go_component chloroplast thylakoid|GO:0009534|11278690|IDA go_component chloroplast stroma|GO:0009570|11278690|IDA go_component chloroplast stroma|GO:0009570|7580259|IDA go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA go_process chloroplast organization|GO:0009658|16980539|IMP go_process photosynthesis|GO:0015979|16980539|IMP product CLP protease proteolytic subunit 6 note CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: chloroplastic endopeptidase Clp complex, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1). protein_id AT1G11750.2p transcript_id AT1G11750.2 protein_id AT1G11750.2p transcript_id AT1G11750.2
At1g11750	chr1:003967609	0.0	W/3967609-3967703,3967786-3967847,3968007-3968061,3968347-3968548,3968632-3968697,3968784-3968924,3969028-3969081,3969208-3969300,3969488-3969535	AT1G11750.1 CDS CLP protease proteolytic subunit 6 [TAIR10] CDS gene_syn ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT, CLP protease proteolytic subunit 6, CLPP6, F25C20.10, F25C20_10, NCLPP1, NCLPP6, NUCLEAR-ENCODED CLPP 1 gene CLPP6 function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component plastid stroma|GO:0009532|14593120|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_function serine-type endopeptidase activity|GO:0004252||IEA go_component chloroplast thylakoid|GO:0009534|11278690|IDA go_component chloroplast stroma|GO:0009570|11278690|IDA go_component chloroplast stroma|GO:0009570|7580259|IDA go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA go_process chloroplast organization|GO:0009658|16980539|IMP go_process photosynthesis|GO:0015979|16980539|IMP product CLP protease proteolytic subunit 6 note CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 13333 Blast hits to 13329 proteins in 3010 species: Archae - 2; Bacteria - 8425; Metazoa - 145; Fungi - 82; Plants - 1079; Viruses - 86; Other Eukaryotes - 3514 (source: NCBI BLink). protein_id AT1G11750.1p transcript_id AT1G11750.1 protein_id AT1G11750.1p transcript_id AT1G11750.1
At1g11755	chr1:003969987	0.0	C/3969987-3969994,3970208-3970290,3970379-3970475,3970556-3970751,3970882-3970943,3971013-3971283,3971441-3971488	AT1G11755.1 CDS Undecaprenyl pyrophosphate synthetase family protein [TAIR10] CDS gene_syn LEAF WILTING 1, LEW1 gene LEW1 function Encodes a cis-prenyltransferase, involved in dolichol biosynthesis. Wilted leaves in mutants due to cell membrane lesions. Mutants have increased drought tolerance, but hypersensitve to dark stress. go_process protein amino acid N-linked glycosylation|GO:0006487|18612099|IMP go_process response to water deprivation|GO:0009414|18612099|IMP go_process response to low light intensity stimulus|GO:0009645|18612099|IMP go_process dolichol biosynthetic process|GO:0019408|18612099|IMP go_process endoplasmic reticulum unfolded protein response|GO:0030968|18612099|IMP go_function dehydrodolichyl diphosphate synthase activity|GO:0045547|18612099|IDA product Undecaprenyl pyrophosphate synthetase family protein note LEAF WILTING 1 (LEW1); CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); Has 155 Blast hits to 155 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 51; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11755.1p transcript_id AT1G11755.1 protein_id AT1G11755.1p transcript_id AT1G11755.1
At1g11760	chr1:003972356	0.0	C/3972356-3972811	AT1G11760.1 CDS mediator of RNA polymerase II transcription subunit-like protein [TAIR10] CDS gene_syn F25C20.9, F25C20_9, MED32 gene MED32 go_component cellular_component|GO:0005575||ND product unknown protein note MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11760.1p transcript_id AT1G11760.1 protein_id AT1G11760.1p transcript_id AT1G11760.1
At1g11765	chr1:003973908	0.0	W/3973908-3974321	AT1G11765.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G26880.1); Has 176 Blast hits to 174 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11765.1p transcript_id AT1G11765.1 protein_id AT1G11765.1p transcript_id AT1G11765.1
At1g11770	chr1:003975679	0.0	W/3975679-3977289	AT1G11770.1 CDS FAD-binding Berberine family protein [TAIR10] CDS gene_syn F25C20.7, F25C20_7 go_component endomembrane system|GO:0012505||IEA go_function catalytic activity|GO:0003824||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function electron carrier activity|GO:0009055||ISS product FAD-binding Berberine family protein note FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G01980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11770.1p transcript_id AT1G11770.1 protein_id AT1G11770.1p transcript_id AT1G11770.1
At1g11780	chr1:003977614	0.0	C/3977614-3977753,3977864-3977985,3978070-3978136,3978223-3978361,3978449-3978762,3978843-3978991,3979071-3979177	AT1G11780.1 CDS oxidoreductase, 2OG-Fe(II) oxygenase family protein [TAIR10] CDS gene_syn F25C20.6, F25C20_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product oxidoreductase, 2OG-Fe(II) oxygenase family protein note oxidoreductase, 2OG-Fe(II) oxygenase family protein; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT5G01780.2); Has 1304 Blast hits to 1304 proteins in 617 species: Archae - 0; Bacteria - 928; Metazoa - 100; Fungi - 94; Plants - 80; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). protein_id AT1G11780.1p transcript_id AT1G11780.1 protein_id AT1G11780.1p transcript_id AT1G11780.1
At1g11785	chr1:003980148	0.0	C/3980148-3980258,3980873-3980902	AT1G11785.1 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11785.1p transcript_id AT1G11785.1 protein_id AT1G11785.1p transcript_id AT1G11785.1
At1g11790	chr1:003981476	0.0	W/3981476-3981740,3983204-3983271,3983358-3983450,3983541-3983741,3983825-3983905,3983983-3984078,3984258-3984335,3984419-3984508,3984595-3984662,3984742-3984823,3984906-3984962	AT1G11790.1 CDS arogenate dehydratase 1 [TAIR10] CDS gene_syn ADT1, F25C20.4, F25C20_4, arogenate dehydratase 1 gene ADT1 function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. go_process metabolic process|GO:0008152||IEA go_process L-phenylalanine biosynthetic process|GO:0009094||IEA go_component chloroplast|GO:0009507|19136569|IDA go_process L-phenylalanine biosynthetic process|GO:0009094||ISS go_function prephenate dehydratase activity|GO:0004664||ISS go_function arogenate dehydratase activity|GO:0047769|17726025|IDA product arogenate dehydratase 1 note arogenate dehydratase 1 (ADT1); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Amino acid-binding ACT (InterPro:IPR002912), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: arogenate dehydratase 2 (TAIR:AT3G07630.2); Has 7165 Blast hits to 7163 proteins in 2224 species: Archae - 179; Bacteria - 3955; Metazoa - 5; Fungi - 120; Plants - 260; Viruses - 0; Other Eukaryotes - 2646 (source: NCBI BLink). protein_id AT1G11790.1p transcript_id AT1G11790.1 protein_id AT1G11790.1p transcript_id AT1G11790.1
At1g11790	chr1:003981476	0.0	W/3981476-3981740,3983204-3983271,3983358-3983450,3983541-3983741,3983825-3983905,3983983-3984078,3984258-3984335,3984419-3984562	AT1G11790.2 CDS arogenate dehydratase 1 [TAIR10] CDS gene_syn ADT1, F25C20.4, F25C20_4, arogenate dehydratase 1 gene ADT1 function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. go_process L-phenylalanine biosynthetic process|GO:0009094||IEA go_component chloroplast|GO:0009507|19136569|IDA go_process L-phenylalanine biosynthetic process|GO:0009094||ISS go_function prephenate dehydratase activity|GO:0004664||ISS go_function arogenate dehydratase activity|GO:0047769|17726025|IDA product arogenate dehydratase 1 note arogenate dehydratase 1 (ADT1); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: arogenate dehydratase 2 (TAIR:AT3G07630.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G11790.2p transcript_id AT1G11790.2 protein_id AT1G11790.2p transcript_id AT1G11790.2
At1g11800	chr1:003985520	0.0	C/3985520-3986104,3986199-3986309,3986403-3986551,3986783-3987263	AT1G11800.1 CDS endonuclease/exonuclease/phosphatase family protein [TAIR10] CDS gene_syn F25C20.3, F25C20_3 go_component intracellular|GO:0005622||IEA go_function zinc ion binding|GO:0008270||IEA go_function hydrolase activity|GO:0016787||ISS product endonuclease/exonuclease/phosphatase family protein note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Zinc finger, RanBP2-type (InterPro:IPR001876); Has 386 Blast hits to 366 proteins in 96 species: Archae - 0; Bacteria - 14; Metazoa - 170; Fungi - 14; Plants - 104; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink). protein_id AT1G11800.1p transcript_id AT1G11800.1 protein_id AT1G11800.1p transcript_id AT1G11800.1
At1g11803	chr1:003987755	0.0	C/3987755-3988030	AT1G11803.1 [TAIR10] pseudogene
At1g11806	chr1:003988346	0.0	W/3988346-3989398	AT1G11806.1 [TAIR10] pseudogene
At1g11810	chr1:003989763	0.0	W/3989763-3990896	AT1G11810.1 CDS F-box associated ubiquitination effector family protein [TAIR10] CDS gene_syn F25C20.2, F25C20_2 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box associated ubiquitination effector family protein note F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G13830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11810.1p transcript_id AT1G11810.1 protein_id AT1G11810.1p transcript_id AT1G11810.1
At1g11820	chr1:003991144	0.0	C/3991144-3991276,3991388-3991415,3991722-3993026,3993258-3993327	AT1G11820.2 CDS O-Glycosyl hydrolases family 17 protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product O-Glycosyl hydrolases family 17 protein note O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1). protein_id AT1G11820.2p transcript_id AT1G11820.2 protein_id AT1G11820.2p transcript_id AT1G11820.2
At1g11820	chr1:003991259	0.0	C/3991259-3991276,3991388-3991415,3991988-3993026,3993258-3993327	AT1G11820.1 CDS O-Glycosyl hydrolases family 17 protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product O-Glycosyl hydrolases family 17 protein note O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 2127 Blast hits to 2113 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2117; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G11820.1p transcript_id AT1G11820.1 protein_id AT1G11820.1p transcript_id AT1G11820.1
AT1G11820	chr1:003991663	0.0	C/3991663-3993026,3993258-3993327	AT1G11820.3 AT1G11820.3 CDS O-Glycosyl hydrolases family 17 protein
At1g11840	chr1:003995928	0.0	W/3995928-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.6 CDS glyoxalase I homolog [TAIR10] CDS gene_syn ATGLX1, F12F1.32, F12F1_32, GLX1, GLYOXALASE I, glyoxalase I homolog gene GLX1 function Encodes a glyoxalase I homolog ATGLX1. go_function lactoylglutathione lyase activity|GO:0004462||IEA go_function metal ion binding|GO:0046872||IEA go_component peroxisome|GO:0005777|20009535|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS product glyoxalase I homolog note glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1). protein_id AT1G11840.6p transcript_id AT1G11840.6 protein_id AT1G11840.6p transcript_id AT1G11840.6
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.1 CDS glyoxalase I homolog [TAIR10] CDS gene_syn ATGLX1, F12F1.32, F12F1_32, GLX1, GLYOXALASE I, glyoxalase I homolog gene GLX1 function Encodes a glyoxalase I homolog ATGLX1. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function lactoylglutathione lyase activity|GO:0004462||IEA go_function metal ion binding|GO:0046872||IEA go_component peroxisome|GO:0005777|20009535|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS product glyoxalase I homolog note glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: peroxisome, plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141; Bacteria - 5669; Metazoa - 503; Fungi - 263; Plants - 249; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink). protein_id AT1G11840.1p transcript_id AT1G11840.1 protein_id AT1G11840.1p transcript_id AT1G11840.1
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.2 CDS glyoxalase I homolog [TAIR10] CDS gene_syn ATGLX1, F12F1.32, F12F1_32, GLX1, GLYOXALASE I, glyoxalase I homolog gene GLX1 function Encodes a glyoxalase I homolog ATGLX1. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function lactoylglutathione lyase activity|GO:0004462||IEA go_function metal ion binding|GO:0046872||IEA go_component peroxisome|GO:0005777|20009535|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS product glyoxalase I homolog note glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: peroxisome, plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141; Bacteria - 5669; Metazoa - 503; Fungi - 263; Plants - 249; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink). protein_id AT1G11840.2p transcript_id AT1G11840.2 protein_id AT1G11840.2p transcript_id AT1G11840.2
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.3 CDS glyoxalase I homolog [TAIR10] CDS gene_syn ATGLX1, F12F1.32, F12F1_32, GLX1, GLYOXALASE I, glyoxalase I homolog gene GLX1 function Encodes a glyoxalase I homolog ATGLX1. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function lactoylglutathione lyase activity|GO:0004462||IEA go_function metal ion binding|GO:0046872||IEA go_component peroxisome|GO:0005777|20009535|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS product glyoxalase I homolog note glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: peroxisome, plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141; Bacteria - 5669; Metazoa - 503; Fungi - 263; Plants - 249; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink). protein_id AT1G11840.3p transcript_id AT1G11840.3 protein_id AT1G11840.3p transcript_id AT1G11840.3
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.4 CDS glyoxalase I homolog [TAIR10] CDS gene_syn ATGLX1, F12F1.32, F12F1_32, GLX1, GLYOXALASE I, glyoxalase I homolog gene GLX1 function Encodes a glyoxalase I homolog ATGLX1. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function lactoylglutathione lyase activity|GO:0004462||IEA go_function metal ion binding|GO:0046872||IEA go_component peroxisome|GO:0005777|20009535|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS product glyoxalase I homolog note glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: peroxisome, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G11840.4p transcript_id AT1G11840.4 protein_id AT1G11840.4p transcript_id AT1G11840.4
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997249-3997290	AT1G11840.5 CDS glyoxalase I homolog [TAIR10] CDS gene_syn ATGLX1, F12F1.32, F12F1_32, GLX1, GLYOXALASE I, glyoxalase I homolog gene GLX1 function Encodes a glyoxalase I homolog ATGLX1. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function lactoylglutathione lyase activity|GO:0004462||IEA go_function metal ion binding|GO:0046872||IEA go_component peroxisome|GO:0005777|20009535|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS product glyoxalase I homolog note glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: peroxisome, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G11840.5p transcript_id AT1G11840.5 protein_id AT1G11840.5p transcript_id AT1G11840.5
At1g11850	chr1:003999237	0.0	W/3999237-3999408,3999535-3999563	AT1G11850.3 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F12F1.31, F12F1_31 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 27 Blast hits to 26 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11850.3p transcript_id AT1G11850.3 protein_id AT1G11850.3p transcript_id AT1G11850.3
At1g11850	chr1:003999237	0.0	W/3999237-3999471,3999517-3999563	AT1G11850.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F12F1.31, F12F1_31 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 38777 Blast hits to 8185 proteins in 741 species: Archae - 46; Bacteria - 14846; Metazoa - 13013; Fungi - 1392; Plants - 5894; Viruses - 543; Other Eukaryotes - 3043 (source: NCBI BLink). protein_id AT1G11850.1p transcript_id AT1G11850.1 protein_id AT1G11850.1p transcript_id AT1G11850.1
At1g11850	chr1:003999237	0.0	W/3999237-3999477,3999517-3999563	AT1G11850.4 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F12F1.31, F12F1_31 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 52145 Blast hits to 9983 proteins in 837 species: Archae - 70; Bacteria - 23777; Metazoa - 15204; Fungi - 1872; Plants - 6370; Viruses - 647; Other Eukaryotes - 4205 (source: NCBI BLink). protein_id AT1G11850.4p transcript_id AT1G11850.4 protein_id AT1G11850.4p transcript_id AT1G11850.4
At1g11850	chr1:003999237	0.0	W/3999237-3999563	AT1G11850.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F12F1.31, F12F1_31 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 84259 Blast hits to 16502 proteins in 1194 species: Archae - 107; Bacteria - 41190; Metazoa - 21798; Fungi - 3523; Plants - 7569; Viruses - 886; Other Eukaryotes - 9186 (source: NCBI BLink). protein_id AT1G11850.2p transcript_id AT1G11850.2 protein_id AT1G11850.2p transcript_id AT1G11850.2
At1g11860	chr1:004001485	0.0	W/4001485-4001526,4001798-4002361,4002457-4002575,4002699-4003245	AT1G11860.3 CDS Glycine cleavage T-protein family [TAIR10] CDS gene_syn F12F1.30, F12F1_30 go_function aminomethyltransferase activity|GO:0004047||IEA go_function aminomethyltransferase activity|GO:0004047||ISS product Glycine cleavage T-protein family note Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3). protein_id AT1G11860.3p transcript_id AT1G11860.3 protein_id AT1G11860.3p transcript_id AT1G11860.3
At1g11860	chr1:004001801	0.0	W/4001801-4002361,4002457-4002575,4002699-4003245	AT1G11860.1 CDS Glycine cleavage T-protein family [TAIR10] CDS gene_syn F12F1.30, F12F1_30 go_component mitochondrion|GO:0005739|18385124|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component apoplast|GO:0048046|18538804|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function aminomethyltransferase activity|GO:0004047||IEA go_function aminomethyltransferase activity|GO:0004047||ISS product Glycine cleavage T-protein family note Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3); Has 18524 Blast hits to 18520 proteins in 1978 species: Archae - 139; Bacteria - 5685; Metazoa - 432; Fungi - 162; Plants - 109; Viruses - 0; Other Eukaryotes - 11997 (source: NCBI BLink). protein_id AT1G11860.1p transcript_id AT1G11860.1 protein_id AT1G11860.1p transcript_id AT1G11860.1
At1g11860	chr1:004001801	0.0	W/4001801-4002361,4002457-4002575,4002699-4003245	AT1G11860.2 CDS Glycine cleavage T-protein family [TAIR10] CDS gene_syn F12F1.30, F12F1_30 go_component mitochondrion|GO:0005739|18385124|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component apoplast|GO:0048046|18538804|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function aminomethyltransferase activity|GO:0004047||IEA go_function aminomethyltransferase activity|GO:0004047||ISS product Glycine cleavage T-protein family note Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3); Has 18524 Blast hits to 18520 proteins in 1978 species: Archae - 139; Bacteria - 5685; Metazoa - 432; Fungi - 162; Plants - 109; Viruses - 0; Other Eukaryotes - 11997 (source: NCBI BLink). protein_id AT1G11860.2p transcript_id AT1G11860.2 protein_id AT1G11860.2p transcript_id AT1G11860.2
At1g11870	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.2 CDS Seryl-tRNA synthetase [TAIR10] CDS gene_syn ATSRS, F12F1.29, F12F1_29, OVA7, SERYL-TRNA SYNTHETASE, SRS, Seryl-tRNA synthetase, ovule abortion 7 gene SRS function Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. go_component chloroplast|GO:0009507|18431481|IDA go_component mitochondrion|GO:0005739|16107332|IDA go_component mitochondrion|GO:0005739|16251277|IDA go_component chloroplast|GO:0009507|16107332|IDA go_component chloroplast|GO:0009507|16251277|IDA go_process seryl-tRNA aminoacylation|GO:0006434||ISS go_process mitochondrion organization|GO:0007005|16107332|TAS go_process chloroplast organization|GO:0009658|16107332|TAS go_process tRNA aminoacylation|GO:0043039||TAS go_process ovule development|GO:0048481|16297076|IMP go_function serine-tRNA ligase activity|GO:0004828|16107332|ISS go_function serine-tRNA ligase activity|GO:0004828||ISS product Seryl-tRNA synthetase note Seryl-tRNA synthetase (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, seryl-tRNA aminoacylation, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin supergroup (InterPro:IPR019955), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 12455 Blast hits to 12441 proteins in 2924 species: Archae - 222; Bacteria - 6893; Metazoa - 384; Fungi - 310; Plants - 156; Viruses - 0; Other Eukaryotes - 4490 (source: NCBI BLink). protein_id AT1G11870.2p transcript_id AT1G11870.2 protein_id AT1G11870.2p transcript_id AT1G11870.2
AT1G11870	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006306-4006416	AT1G11870.5 AT1G11870.5 CDS Seryl-tRNA synthetase
AT1G11870	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006268	AT1G11870.4 AT1G11870.4 CDS Seryl-tRNA synthetase
At1g11870	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006117-4006150	AT1G11870.3 CDS Seryl-tRNA synthetase [TAIR10] CDS gene_syn ATSRS, F12F1.29, F12F1_29, OVA7, SERYL-TRNA SYNTHETASE, SRS, Seryl-tRNA synthetase, ovule abortion 7 gene SRS function Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. go_component chloroplast|GO:0009507|18431481|IDA go_component mitochondrion|GO:0005739|16107332|IDA go_component mitochondrion|GO:0005739|16251277|IDA go_component chloroplast|GO:0009507|16107332|IDA go_component chloroplast|GO:0009507|16251277|IDA go_process seryl-tRNA aminoacylation|GO:0006434||ISS go_process mitochondrion organization|GO:0007005|16107332|TAS go_process chloroplast organization|GO:0009658|16107332|TAS go_process tRNA aminoacylation|GO:0043039||TAS go_process ovule development|GO:0048481|16297076|IMP go_function serine-tRNA ligase activity|GO:0004828|16107332|ISS go_function serine-tRNA ligase activity|GO:0004828||ISS product Seryl-tRNA synthetase note Seryl-tRNA synthetase (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, seryl-tRNA aminoacylation, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin supergroup (InterPro:IPR019955), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G11870.3p transcript_id AT1G11870.3 protein_id AT1G11870.3p transcript_id AT1G11870.3
At1g11870	chr1:004003895	0.0	W/4003895-4004099,4004176-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.1 CDS Seryl-tRNA synthetase [TAIR10] CDS gene_syn ATSRS, F12F1.29, F12F1_29, OVA7, SERYL-TRNA SYNTHETASE, SRS, Seryl-tRNA synthetase, ovule abortion 7 gene SRS function Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. go_component chloroplast|GO:0009507|18431481|IDA go_component mitochondrion|GO:0005739|16107332|IDA go_component mitochondrion|GO:0005739|16251277|IDA go_component chloroplast|GO:0009507|16107332|IDA go_component chloroplast|GO:0009507|16251277|IDA go_process seryl-tRNA aminoacylation|GO:0006434||ISS go_process mitochondrion organization|GO:0007005|16107332|TAS go_process chloroplast organization|GO:0009658|16107332|TAS go_process tRNA aminoacylation|GO:0043039||TAS go_process ovule development|GO:0048481|16297076|IMP go_function serine-tRNA ligase activity|GO:0004828|16107332|ISS go_function serine-tRNA ligase activity|GO:0004828||ISS product Seryl-tRNA synthetase note Seryl-tRNA synthetase (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, seryl-tRNA aminoacylation, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin supergroup (InterPro:IPR019955), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 12332 Blast hits to 12318 proteins in 2877 species: Archae - 222; Bacteria - 6777; Metazoa - 382; Fungi - 307; Plants - 156; Viruses - 0; Other Eukaryotes - 4488 (source: NCBI BLink). protein_id AT1G11870.1p transcript_id AT1G11870.1 protein_id AT1G11870.1p transcript_id AT1G11870.1
AT1G11870	chr1:004004608	0.0	W/4004608-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.6 AT1G11870.6 CDS Seryl-tRNA synthetase
AT1G11880	chr1:004007909	0.0	C/4007909-4008073,4008177-4008337,4008412-4008641,4008725-4008903,4009270-4009465,4009578-4009648,4009988-4010131	AT1G11880.2 AT1G11880.2 CDS transferases, transferring hexosyl groups
At1g11880	chr1:004007909	0.0	C/4007909-4008073,4008177-4008337,4008412-4008641,4008725-4008903,4009270-4009465,4009578-4009670,4009799-4009904,4009988-4010327	AT1G11880.1 CDS transferases, transferring hexosyl groups [TAIR10] CDS gene_syn F12F1.28, F12F1_28 go_component endoplasmic reticulum membrane|GO:0005789||IEA go_component integral to membrane|GO:0016021||IEA go_process GPI anchor biosynthetic process|GO:0006506||IEA go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA product transferases, transferring hexosyl groups note transferases, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, PIG-V (InterPro:IPR007315); Has 490 Blast hits to 469 proteins in 237 species: Archae - 6; Bacteria - 111; Metazoa - 123; Fungi - 146; Plants - 40; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). protein_id AT1G11880.1p transcript_id AT1G11880.1 protein_id AT1G11880.1p transcript_id AT1G11880.1
AT1G11880	chr1:004008386	0.0	C/4008386-4008641,4008725-4008903,4009270-4009465,4009578-4009670,4009799-4009904,4009988-4010327	AT1G11880.3 AT1G11880.3 CDS transferases, transferring hexosyl groups
At1g11890	chr1:004011509	0.0	W/4011509-4011696,4011984-4012144,4012236-4012382,4012531-4012607,4012752-4012835	AT1G11890.1 CDS Synaptobrevin family protein [TAIR10] CDS gene_syn ATSEC22, F12F1.27, F12F1_27, SEC22, SECRETION 22 gene SEC22 function member of SEC22 Gene Family go_component plasma membrane|GO:0005886|17644812|IDA go_process transport|GO:0006810||IEA go_process vesicle-mediated transport|GO:0016192||IEA go_component endoplasmic reticulum|GO:0005783|16244155|IDA go_component Golgi apparatus|GO:0005794|16244155|IDA go_component membrane|GO:0016020||ISS go_process vesicle-mediated transport|GO:0016192||ISS go_function transporter activity|GO:0005215||ISS product Synaptobrevin family protein note SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink). protein_id AT1G11890.1p transcript_id AT1G11890.1 protein_id AT1G11890.1p transcript_id AT1G11890.1
At1g11900	chr1:004013166	0.0	C/4013166-4014209,4014571-4014630	AT1G11900.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F12F1.26, F12F1_26 go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 30383 Blast hits to 10536 proteins in 259 species: Archae - 3; Bacteria - 11; Metazoa - 189; Fungi - 334; Plants - 28802; Viruses - 0; Other Eukaryotes - 1044 (source: NCBI BLink). protein_id AT1G11900.1p transcript_id AT1G11900.1 protein_id AT1G11900.1p transcript_id AT1G11900.1
At1g11905	chr1:004014958	0.0	W/4014958-4015240,4015636-4015666,4015874-4016222	AT1G11905.2 CDS B-cell receptor-associated protein 31-like [TAIR10] CDS go_component endoplasmic reticulum|GO:0005783||IEA go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process intracellular protein transport|GO:0006886||IEA go_function molecular_function|GO:0003674||ND product B-cell receptor-associated protein 31-like note B-cell receptor-associated protein 31-like ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated 31-like (TAIR:AT5G42570.1); Has 298 Blast hits to 298 proteins in 71 species: Archae - 7; Bacteria - 30; Metazoa - 108; Fungi - 11; Plants - 132; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G11905.2p transcript_id AT1G11905.2 protein_id AT1G11905.2p transcript_id AT1G11905.2
At1g11905	chr1:004014958	0.0	W/4014958-4015240,4015840-4016222	AT1G11905.1 CDS B-cell receptor-associated protein 31-like [TAIR10] CDS go_component endoplasmic reticulum|GO:0005783||IEA go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process intracellular protein transport|GO:0006886||IEA go_function molecular_function|GO:0003674||ND product B-cell receptor-associated protein 31-like note B-cell receptor-associated protein 31-like ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated 31-like (TAIR:AT5G42570.1); Has 277 Blast hits to 277 proteins in 61 species: Archae - 9; Bacteria - 14; Metazoa - 105; Fungi - 11; Plants - 130; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G11905.1p transcript_id AT1G11905.1 protein_id AT1G11905.1p transcript_id AT1G11905.1
At1g11910	chr1:004017119	0.0	C/4017119-4017203,4017290-4017378,4017469-4017588,4017686-4017842,4017960-4018024,4018125-4018238,4018330-4018394,4018527-4018566,4018653-4018821,4018905-4019017,4019102-4019196,4019382-4019442,4019527-4019874	AT1G11910.1 CDS aspartic proteinase A1 [TAIR10] CDS gene_syn APA1, ATAPA1, F12F1.24, F12F1_24, aspartic proteinase A1 gene APA1 function Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8). go_component vacuole|GO:0005773|15215502|IDA go_component vacuole|GO:0005773|15539469|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process proteolysis|GO:0006508|20079503|IDA go_process proteolysis|GO:0006508||ISS go_function endopeptidase activity|GO:0004175|20079503|IDA product aspartic proteinase A1 note aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink). protein_id AT1G11910.1p transcript_id AT1G11910.1 protein_id AT1G11910.1p transcript_id AT1G11910.1
AT1G11910	chr1:004017119	0.0	C/4017119-4017203,4017290-4017378,4017469-4017588,4017686-4017842,4017960-4018024,4018125-4018238,4018330-4018394,4018527-4018566,4018653-4018821,4018905-4019017,4019102-4019196,4019382-4019442,4019527-4019879,4019969-4019996	AT1G11910.2 AT1G11910.2 CDS aspartic proteinase A1
At1g11915	chr1:004021830	0.0	W/4021830-4022646,4022792-4022833,4022954-4023084	AT1G11915.1 CDS wall-associated receptor kinase galacturonan-binding protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11915.1p transcript_id AT1G11915.1 protein_id AT1G11915.1p transcript_id AT1G11915.1
At1g11920	chr1:004023667	0.0	C/4023667-4023888,4023995-4024133,4024223-4024326,4024408-4025097	AT1G11920.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn F12F1.22, F12F1_22 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function lyase activity|GO:0016829||ISS go_function pectate lyase activity|GO:0030570||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: root hair specific 14 (TAIR:AT4G22080.1); Has 1675 Blast hits to 1668 proteins in 273 species: Archae - 0; Bacteria - 759; Metazoa - 0; Fungi - 209; Plants - 697; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G11920.1p transcript_id AT1G11920.1 protein_id AT1G11920.1p transcript_id AT1G11920.1
At1g11925	chr1:004026195	0.0	C/4026195-4026617	AT1G11925.1 CDS Stigma-specific Stig1 family protein [TAIR10] CDS function Encodes a Stigma-specific Stig1 family protein go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Stigma-specific Stig1 family protein note Stigma-specific Stig1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: Stigma-specific Stig1 family protein (TAIR:AT1G50720.1); Has 350 Blast hits to 216 proteins in 35 species: Archae - 0; Bacteria - 116; Metazoa - 3; Fungi - 54; Plants - 172; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G11925.1p transcript_id AT1G11925.1 protein_id AT1G11925.1p transcript_id AT1G11925.1
At1g11930	chr1:004028783	0.0	W/4028783-4029043,4029142-4029208,4029324-4029370,4029628-4029715,4029818-4029951,4030041-4030139,4030221-4030298	AT1G11930.1 CDS Predicted pyridoxal phosphate-dependent enzyme, YBL036C type [TAIR10] CDS gene_syn F12F1.20, F12F1_20 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function pyridoxal phosphate binding|GO:0030170||ISS product Predicted pyridoxal phosphate-dependent enzyme, YBL036C type note Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT4G26860.1); Has 7110 Blast hits to 7110 proteins in 2384 species: Archae - 21; Bacteria - 4266; Metazoa - 130; Fungi - 135; Plants - 56; Viruses - 0; Other Eukaryotes - 2502 (source: NCBI BLink). protein_id AT1G11930.1p transcript_id AT1G11930.1 protein_id AT1G11930.1p transcript_id AT1G11930.1
At1g11930	chr1:004028783	0.0	W/4028783-4029043,4029142-4029208,4029324-4029370,4029628-4029715,4029818-4029951,4030041-4030139,4030227-4030298	AT1G11930.2 CDS Predicted pyridoxal phosphate-dependent enzyme, YBL036C type [TAIR10] CDS gene_syn F12F1.20, F12F1_20 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function pyridoxal phosphate binding|GO:0030170||ISS product Predicted pyridoxal phosphate-dependent enzyme, YBL036C type note Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT4G26860.1); Has 7155 Blast hits to 7155 proteins in 2359 species: Archae - 21; Bacteria - 4226; Metazoa - 130; Fungi - 135; Plants - 56; Viruses - 0; Other Eukaryotes - 2587 (source: NCBI BLink). protein_id AT1G11930.2p transcript_id AT1G11930.2 protein_id AT1G11930.2p transcript_id AT1G11930.2
At1g11940	chr1:004031768	0.0	C/4031768-4031932,4032020-4032166,4032258-4032314,4032506-4032547,4032648-4032728,4032876-4032957,4033088-4033159,4033284-4033384,4033460-4033576,4033659-4033946	AT1G11940.1 CDS Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [TAIR10] CDS gene_syn F12F1.19, F12F1_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein note Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G62305.1); Has 575 Blast hits to 575 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 548; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G11940.1p transcript_id AT1G11940.1 protein_id AT1G11940.1p transcript_id AT1G11940.1
AT1G11940	chr1:004032470	0.0	C/4032470-4032547,4032648-4032728,4032876-4032957,4033088-4033159,4033284-4033384,4033460-4033576,4033659-4033946	AT1G11940.2 AT1G11940.2 CDS Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
At1g11950	chr1:004034747	0.0	C/4034747-4034821,4034926-4035045,4035126-4035211,4035294-4035366,4035442-4035723,4035804-4036133,4036212-4036908,4036994-4037057,4037134-4037266,4037377-4037476,4037557-4037672,4037759-4038310	AT1G11950.1 CDS Transcription factor jumonji (jmjC) domain-containing protein [TAIR10] CDS gene_syn F12F1.18, F12F1_18 go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Transcription factor jumonji (jmjC) domain-containing protein note Transcription factor jumonji (jmjC) domain-containing protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G11950.1p transcript_id AT1G11950.1 protein_id AT1G11950.1p transcript_id AT1G11950.1
AT1G11950	chr1:004034747	0.0	C/4034747-4034821,4034926-4035045,4035126-4035211,4035294-4035366,4035442-4035723,4035804-4036133,4036212-4036908,4036994-4037057,4037134-4037266,4037377-4037476,4037557-4037672,4037759-4038310	AT1G11950.3 AT1G11950.3 CDS Transcription factor jumonji (jmjC) domain-containing protein
AT1G11950	chr1:004035023	0.0	C/4035023-4035045,4035155-4035211,4035294-4035366,4035442-4035723,4035804-4036133,4036212-4036908,4036994-4037057,4037134-4037266,4037377-4037476,4037557-4037672,4037759-4038310	AT1G11950.2 AT1G11950.2 CDS Transcription factor jumonji (jmjC) domain-containing protein
At1g11960	chr1:004039871	0.0	C/4039871-4040131,4040266-4040499,4040671-4040995,4041082-4041327,4041407-4041747,4041827-4041907,4041991-4042110,4042193-4042294,4042367-4042502,4042581-4042736,4042830-4043143	AT1G11960.1 CDS ERD (early-responsive to dehydration stress) family protein [TAIR10] CDS gene_syn F12F1.17, F12F1_17 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product ERD (early-responsive to dehydration stress) family protein note ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G62320.1); Has 1452 Blast hits to 1271 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 184; Fungi - 702; Plants - 435; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). protein_id AT1G11960.1p transcript_id AT1G11960.1 protein_id AT1G11960.1p transcript_id AT1G11960.1
AT1G11960	chr1:004039871	0.0	C/4039871-4040131,4040266-4040499,4040671-4040995,4041082-4041327,4041407-4041747,4041827-4041907,4041991-4042110,4042193-4042294,4042367-4042502,4042581-4042736,4042830-4043143	AT1G11960.3 AT1G11960.3 CDS ERD (early-responsive to dehydration stress) family protein
AT1G11960	chr1:004040590	0.0	C/4040590-4040995,4041082-4041327,4041407-4041747,4041827-4041907,4041991-4042110,4042193-4042294,4042367-4042502,4042581-4042736,4042830-4043143	AT1G11960.2 AT1G11960.2 CDS ERD (early-responsive to dehydration stress) family protein
At1g11970	chr1:004044370	0.0	W/4044370-4044669	AT1G11970.1 CDS Ubiquitin-like superfamily protein [TAIR10] CDS gene_syn F12F1.16, F12F1_16 go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Ubiquitin-like superfamily protein note Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin-related protein 3 (TAIR:AT1G11980.1); Has 285 Blast hits to 285 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 22; Plants - 105; Viruses - 1; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G11970.1p transcript_id AT1G11970.1 protein_id AT1G11970.1p transcript_id AT1G11970.1
At1g11980	chr1:004045619	0.0	W/4045619-4045855	AT1G11980.1 CDS ubiquitin-related protein 3 [TAIR10] CDS gene_syn F12F1.15, F12F1_15, RUB3, ubiquitin-related protein 3 gene RUB3 go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product ubiquitin-related protein 3 note ubiquitin-related protein 3 (RUB3); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: related to ubiquitin 1 (TAIR:AT1G31340.1); Has 10783 Blast hits to 5743 proteins in 691 species: Archae - 0; Bacteria - 14; Metazoa - 4770; Fungi - 1304; Plants - 2605; Viruses - 173; Other Eukaryotes - 1917 (source: NCBI BLink). protein_id AT1G11980.1p transcript_id AT1G11980.1 protein_id AT1G11980.1p transcript_id AT1G11980.1
At1g11990	chr1:004046246	0.0	C/4046246-4046551,4046637-4046877,4046965-4047110,4047222-4047323,4047401-4047544,4047635-4047755,4047862-4047950,4048036-4048097,4048175-4048313,4048386-4048478,4048731-4049060	AT1G11990.1 CDS O-fucosyltransferase family protein [TAIR10] CDS gene_syn F12F1.14, F12F1_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product O-fucosyltransferase family protein note O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G62330.1); Has 811 Blast hits to 808 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 811; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G11990.1p transcript_id AT1G11990.1 protein_id AT1G11990.1p transcript_id AT1G11990.1
AT1G11990	chr1:004046246	0.0	C/4046246-4046551,4046637-4046877,4046965-4047323,4047401-4047544,4047635-4047755,4047862-4047950,4048036-4048097,4048175-4048268,4048386-4048478,4048731-4049060	AT1G11990.2 AT1G11990.2 CDS O-fucosyltransferase family protein
At1g12000	chr1:004050159	0.0	C/4050159-4050232,4050322-4050390,4050474-4050518,4050604-4050688,4050797-4050908,4051023-4051138,4051245-4051415,4051516-4051647,4051874-4051962,4052052-4052115,4052286-4052391,4052530-4052636,4052733-4052786,4052916-4053037,4053138-4053296,4053532-4053727	AT1G12000.1 CDS Phosphofructokinase family protein [TAIR10] CDS gene_syn F12F1.13, F12F1_13 go_component cell wall|GO:0005618|16287169|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex|GO:0010318||ISS go_process glycolysis|GO:0006096||ISS go_process photosynthesis|GO:0015979|19533038|IMP go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334|19533038|IMP go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334||ISS product Phosphofructokinase family protein note Phosphofructokinase family protein; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to cadmium ion, glycolysis, photosynthesis; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT4G04040.1); Has 6357 Blast hits to 6276 proteins in 1942 species: Archae - 28; Bacteria - 4805; Metazoa - 61; Fungi - 134; Plants - 409; Viruses - 4; Other Eukaryotes - 916 (source: NCBI BLink). protein_id AT1G12000.1p transcript_id AT1G12000.1 protein_id AT1G12000.1p transcript_id AT1G12000.1
At1g12010	chr1:004056274	0.0	W/4056274-4056387,4056562-4056788,4056877-4057210,4057383-4057670	AT1G12010.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F12F1.12, F12F1_12 function Encodes a protein that appears to have 1-amino-cyclopropane-1-carboxylic acid oxidase activity based on mutant analyses. go_component cellular_component|GO:0005575||ND go_process ethylene biosynthetic process|GO:0009693|19513806|IMP go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|19513806|IMP go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ACC oxidase 2 (TAIR:AT1G62380.1); Has 8592 Blast hits to 8546 proteins in 1001 species: Archae - 0; Bacteria - 1125; Metazoa - 104; Fungi - 1034; Plants - 4961; Viruses - 0; Other Eukaryotes - 1368 (source: NCBI BLink). protein_id AT1G12010.1p transcript_id AT1G12010.1 protein_id AT1G12010.1p transcript_id AT1G12010.1
At1g12013	chr1:004058287	0.0	W/4058287-4058416	AT1G12013.1 [TAIR10] snoRNA gene_syn SNOR111, small nucleolar RNA111 gene SNOR111 function Encodes a H/ACA-box snoRNA (snoR111). Gb: AJ505682 go_component box H/ACA snoRNP complex|GO:0031429||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product SNOR111 (small nucleolar RNA111); snoRNA transcript_id AT1G12013.1
At1g12015	chr1:004058487	0.0	W/4058487-4058576	AT1G12015.1 [TAIR10] snoRNA gene_syn 51018.SNORNA00001 go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G12015.1
At1g12020	chr1:004062625	0.0	C/4062625-4063305	AT1G12020.1 CDS hypothetical protein [TAIR10] CDS gene_syn F12F1.11, F12F1_11 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G12020.1p transcript_id AT1G12020.1 protein_id AT1G12020.1p transcript_id AT1G12020.1
At1g12030	chr1:004064751	0.0	C/4064751-4065262,4065944-4066319	AT1G12030.1 CDS phosphoenolpyruvate carboxylase, putative (DUF506) [TAIR10] CDS gene_syn F12F1.10, F12F1_10 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF506) note Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT1G62420.1); Has 393 Blast hits to 391 proteins in 26 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 387; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G12030.1p transcript_id AT1G12030.1 protein_id AT1G12030.1p transcript_id AT1G12030.1
At1g12040	chr1:004070160	0.0	W/4070160-4072394	AT1G12040.1 CDS leucine-rich repeat/extensin 1 [TAIR10] CDS gene_syn F12F1.9, F12F1_9, LRX1, leucine-rich repeat/extensin 1 gene LRX1 function encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper. go_component plant-type cell wall|GO:0009505|11331608|IDA go_process cell morphogenesis involved in differentiation|GO:0000904|11331608|IMP go_process unidimensional cell growth|GO:0009826|11331608|IMP go_process trichoblast differentiation|GO:0010054|11331608|IMP go_function structural constituent of cell wall|GO:0005199|12644681|ISS go_function histidine phosphotransfer kinase activity|GO:0009927||NAS product leucine-rich repeat/extensin 1 note leucine-rich repeat/extensin 1 (LRX1); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat/extensin 2 (TAIR:AT1G62440.1); Has 373279 Blast hits to 102116 proteins in 2982 species: Archae - 793; Bacteria - 62996; Metazoa - 122212; Fungi - 47201; Plants - 91548; Viruses - 7950; Other Eukaryotes - 40579 (source: NCBI BLink). protein_id AT1G12040.1p transcript_id AT1G12040.1 protein_id AT1G12040.1p transcript_id AT1G12040.1
At1g12050	chr1:004072904	0.0	W/4072904-4073110,4073486-4073564,4073658-4073716,4073809-4073933,4074030-4074104,4074348-4074423,4074542-4074641,4074725-4074784,4074879-4074949,4075028-4075090,4075195-4075259,4075343-4075439,4075534-4075659,4075794-4075856	AT1G12050.1 CDS fumarylacetoacetase, putative [TAIR10] CDS gene_syn F12F1.8, F12F1_8 go_process metabolic process|GO:0008152||IEA go_process aromatic amino acid family metabolic process|GO:0009072||IEA go_function catalytic activity|GO:0003824||IEA go_function fumarylacetoacetase activity|GO:0004334||IEA go_component cellular_component|GO:0005575||ND go_process aromatic amino acid family metabolic process|GO:0009072||ISS go_function fumarylacetoacetase activity|GO:0004334||ISS product fumarylacetoacetase, putative note fumarylacetoacetase, putative; FUNCTIONS IN: fumarylacetoacetase activity, catalytic activity; INVOLVED IN: aromatic amino acid family metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234), Fumarylacetoacetase, N-terminal (InterPro:IPR015377), Fumarylacetoacetase (InterPro:IPR005959); Has 4441 Blast hits to 4434 proteins in 1063 species: Archae - 139; Bacteria - 2814; Metazoa - 297; Fungi - 179; Plants - 60; Viruses - 0; Other Eukaryotes - 952 (source: NCBI BLink). protein_id AT1G12050.1p transcript_id AT1G12050.1 protein_id AT1G12050.1p transcript_id AT1G12050.1
At1g12060	chr1:004076334	0.0	W/4076334-4076981	AT1G12060.1 CDS BCL-2-associated athanogene 5 [TAIR10] CDS gene_syn ATBAG5, BAG5, BCL-2-associated athanogene 5, F12F1.7, F12F1_7 gene BAG5 function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. go_process apoptosis|GO:0006915||IEA go_component cellular_component|GO:0005575||ND go_process apoptosis|GO:0006915||ISS go_process regulation of apoptosis|GO:0042981||ISS product BCL-2-associated athanogene 5 note BCL-2-associated athanogene 5 (BAG5); INVOLVED IN: regulation of apoptosis, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis regulator, Bcl-2 protein, BAG (InterPro:IPR003103), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: BCL-2-associated athanogene 6 (TAIR:AT2G46240.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12060.1p transcript_id AT1G12060.1 protein_id AT1G12060.1p transcript_id AT1G12060.1
At1g12064	chr1:004077705	0.0	C/4077705-4078034	AT1G12064.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G12064.1p transcript_id AT1G12064.1 protein_id AT1G12064.1p transcript_id AT1G12064.1
At1g12070	chr1:004078913	0.0	C/4078913-4078984,4079147-4079271,4079364-4079588,4079766-4079832,4079924-4080106	AT1G12070.1 CDS Immunoglobulin E-set superfamily protein [TAIR10] CDS gene_syn F12F1.5, F12F1_5 go_component cytoplasm|GO:0005737||IEA go_function Rho GDP-dissociation inhibitor activity|GO:0005094||IEA go_component cytoplasm|GO:0005737||ISS go_process biological_process|GO:0008150||ND go_function Rho GDP-dissociation inhibitor activity|GO:0005094||ISS product Immunoglobulin E-set superfamily protein note Immunoglobulin E-set superfamily protein; FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1); Has 658 Blast hits to 658 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 322; Fungi - 164; Plants - 123; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). protein_id AT1G12070.1p transcript_id AT1G12070.1 protein_id AT1G12070.1p transcript_id AT1G12070.1
At1g12080	chr1:004084289	0.0	W/4084289-4084303,4084487-4084567,4084670-4084888	AT1G12080.1 CDS Vacuolar calcium-binding protein-related [TAIR10] CDS gene_syn F12F1.4, F12F1_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Vacuolar calcium-binding protein-related note Vacuolar calcium-binding protein-related; Has 7161 Blast hits to 3135 proteins in 433 species: Archae - 55; Bacteria - 867; Metazoa - 2008; Fungi - 476; Plants - 327; Viruses - 233; Other Eukaryotes - 3195 (source: NCBI BLink). protein_id AT1G12080.1p transcript_id AT1G12080.1 protein_id AT1G12080.1p transcript_id AT1G12080.1
At1g12080	chr1:004084289	0.0	W/4084289-4084303,4084487-4084888	AT1G12080.2 CDS Vacuolar calcium-binding protein-related [TAIR10] CDS gene_syn F12F1.4, F12F1_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Vacuolar calcium-binding protein-related note Vacuolar calcium-binding protein-related; BEST Arabidopsis thaliana protein match is: Vacuolar calcium-binding protein-related (TAIR:AT1G62480.1); Has 21609 Blast hits to 9169 proteins in 1089 species: Archae - 145; Bacteria - 3596; Metazoa - 6157; Fungi - 1827; Plants - 760; Viruses - 333; Other Eukaryotes - 8791 (source: NCBI BLink). protein_id AT1G12080.2p transcript_id AT1G12080.2 protein_id AT1G12080.2p transcript_id AT1G12080.2
At1g12090	chr1:004090176	0.0	C/4090176-4090589	AT1G12090.1 CDS extensin-like protein [TAIR10] CDS gene_syn ELP, F12F1.3, F12F1_3, extensin-like protein gene ELP function extensin-like protein (ELP) go_component endomembrane system|GO:0012505||IEA go_process lipid transport|GO:0006869||IEA go_process lipid transport|GO:0006869||ISS go_function lipid binding|GO:0008289||ISS product extensin-like protein note extensin-like protein (ELP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G62510.1); Has 793 Blast hits to 787 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 787; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G12090.1p transcript_id AT1G12090.1 protein_id AT1G12090.1p transcript_id AT1G12090.1
At1g12100	chr1:004095246	0.0	W/4095246-4095273,4095475-4095845	AT1G12100.1 CDS Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [TAIR10] CDS gene_syn F12F1.2, F12F1_2 go_component endomembrane system|GO:0012505||IEA go_process lipid transport|GO:0006869||IEA go_process lipid transport|GO:0006869||ISS go_function lipid binding|GO:0008289||ISS product Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein note Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, leaf, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G12100.1p transcript_id AT1G12100.1 protein_id AT1G12100.1p transcript_id AT1G12100.1
At1g12110	chr1:004105341	0.0	W/4105341-4105455,4105641-4105818,4105913-4105952,4106127-4106701,4108426-4109290	AT1G12110.1 CDS nitrate transporter 1.1 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, ATNRT1, ATNRT1.1, B-1, CHL1, CHL1-1, CHLORATE/NITRATE TRANSPORTER, CHLORINA 1, F12F1.1, F12F1_1, NITRATE TRANSPORTER 1, NITRATE/CHLORATE TRANSPORTER, NRT1, NRT1.1, nitrate transporter 1.1 gene NRT1.1 function Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium. go_component plasma membrane|GO:0005886|17317660|IDA go_process response to water deprivation|GO:0009414|12509525|IMP go_process response to nitrate|GO:0010167|17148611|IMP go_process nitrate transport|GO:0015706|9844028|IMP go_function transporter activity|GO:0005215||ISS go_function nitrate transmembrane transporter activity|GO:0015112|9844028|IMP product nitrate transporter 1.1 note nitrate transporter 1.1 (NRT1.1); FUNCTIONS IN: transporter activity, nitrate transmembrane transporter activity; INVOLVED IN: response to water deprivation, nitrate transport, response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G26690.1); Has 6820 Blast hits to 6682 proteins in 1271 species: Archae - 0; Bacteria - 3284; Metazoa - 500; Fungi - 374; Plants - 2207; Viruses - 0; Other Eukaryotes - 455 (source: NCBI BLink). protein_id AT1G12110.1p transcript_id AT1G12110.1 protein_id AT1G12110.1p transcript_id AT1G12110.1
At1g12120	chr1:004114933	0.0	C/4114933-4116270,4116356-4116469	AT1G12120.1 CDS hypothetical protein (DUF863) [TAIR10] CDS gene_syn T28K15.14, T28K15_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF863) note Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G62530.2); Has 160 Blast hits to 145 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 14; Plants - 101; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). protein_id AT1G12120.1p transcript_id AT1G12120.1 protein_id AT1G12120.1p transcript_id AT1G12120.1
At1g12130	chr1:004118594	0.0	W/4118594-4119146,4119632-4119702,4119819-4119965,4120075-4120293,4120449-4120871	AT1G12130.1 CDS Flavin-binding monooxygenase family protein [TAIR10] CDS gene_syn T28K15.13, T28K15_13 go_process oxidation reduction|GO:0055114||IEA go_function flavin-containing monooxygenase activity|GO:0004499||IEA go_function FAD binding|GO:0050660||IEA go_function NADP or NADPH binding|GO:0050661||IEA go_function monooxygenase activity|GO:0004497||ISS product Flavin-binding monooxygenase family protein note Flavin-binding monooxygenase family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G12160.1); Has 14567 Blast hits to 13953 proteins in 1841 species: Archae - 71; Bacteria - 7478; Metazoa - 1324; Fungi - 1597; Plants - 844; Viruses - 0; Other Eukaryotes - 3253 (source: NCBI BLink). protein_id AT1G12130.1p transcript_id AT1G12130.1 protein_id AT1G12130.1p transcript_id AT1G12130.1
At1g12140	chr1:004121386	0.0	W/4121386-4121932,4122016-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.1 CDS flavin-monooxygenase glucosinolate S-oxygenase 5 [TAIR10] CDS gene_syn FMO GS-OX5, T28K15.12, T28K15_12, flavin-monooxygenase glucosinolate S-oxygenase 5 gene FMO GS-OX5 function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates go_process glucosinolate biosynthetic process|GO:0019761|18799661|IMP go_function monooxygenase activity|GO:0004497||ISS go_function flavin-containing monooxygenase activity|GO:0004499|18799661|IDA go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IDA go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IMP product flavin-monooxygenase glucosinolate S-oxygenase 5 note flavin-monooxygenase glucosinolate S-oxygenase 5 (FMO GS-OX5); FUNCTIONS IN: monooxygenase activity, 8-methylthiopropyl glucosinolate S-oxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 3 (TAIR:AT1G62560.1); Has 12586 Blast hits to 12018 proteins in 1454 species: Archae - 35; Bacteria - 5986; Metazoa - 1231; Fungi - 1610; Plants - 812; Viruses - 0; Other Eukaryotes - 2912 (source: NCBI BLink). protein_id AT1G12140.1p transcript_id AT1G12140.1 protein_id AT1G12140.1p transcript_id AT1G12140.1
AT1G12140	chr1:004121386	0.0	W/4121386-4121932,4122016-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.3 AT1G12140.3 CDS flavin-monooxygenase glucosinolate S-oxygenase 5
AT1G12140	chr1:004121386	0.0	W/4121386-4121932,4122016-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.4 AT1G12140.4 CDS flavin-monooxygenase glucosinolate S-oxygenase 5
At1g12140	chr1:004121386	0.0	W/4121386-4121932,4122022-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.2 CDS flavin-monooxygenase glucosinolate S-oxygenase 5 [TAIR10] CDS gene_syn FMO GS-OX5, T28K15.12, T28K15_12, flavin-monooxygenase glucosinolate S-oxygenase 5 gene FMO GS-OX5 function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates go_process glucosinolate biosynthetic process|GO:0019761|18799661|IMP go_function monooxygenase activity|GO:0004497||ISS go_function flavin-containing monooxygenase activity|GO:0004499|18799661|IDA go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IDA go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IMP product flavin-monooxygenase glucosinolate S-oxygenase 5 note flavin-monooxygenase glucosinolate S-oxygenase 5 (FMO GS-OX5); CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 3 (TAIR:AT1G62560.1); Has 11380 Blast hits to 10828 proteins in 1431 species: Archae - 28; Bacteria - 5328; Metazoa - 1193; Fungi - 1290; Plants - 802; Viruses - 0; Other Eukaryotes - 2739 (source: NCBI BLink). protein_id AT1G12140.2p transcript_id AT1G12140.2 protein_id AT1G12140.2p transcript_id AT1G12140.2
At1g12150	chr1:004123530	0.0	C/4123530-4125005,4125158-4125328	AT1G12150.1 CDS weak chloroplast movement under blue light protein (DUF827) [TAIR10] CDS gene_syn T28K15.11, T28K15_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF827) note Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT4G17210.1); Has 175296 Blast hits to 90319 proteins in 3640 species: Archae - 2475; Bacteria - 39608; Metazoa - 72017; Fungi - 13793; Plants - 10094; Viruses - 656; Other Eukaryotes - 36653 (source: NCBI BLink). protein_id AT1G12150.1p transcript_id AT1G12150.1 protein_id AT1G12150.1p transcript_id AT1G12150.1
AT1G12150	chr1:004123530	0.0	C/4123530-4125005,4125158-4125328	AT1G12150.2 AT1G12150.2 CDS weak chloroplast movement under blue light protein (DUF827)
At1g12160	chr1:004126068	0.0	W/4126068-4126611,4126694-4126764,4126868-4127011,4127093-4127311,4127662-4128090	AT1G12160.1 CDS Flavin-binding monooxygenase family protein [TAIR10] CDS gene_syn T28K15.10, T28K15_10 go_process oxidation reduction|GO:0055114||IEA go_function flavin-containing monooxygenase activity|GO:0004499||IEA go_function FAD binding|GO:0050660||IEA go_function NADP or NADPH binding|GO:0050661||IEA go_component cellular_component|GO:0005575||ND go_function monooxygenase activity|GO:0004497||ISS product Flavin-binding monooxygenase family protein note Flavin-binding monooxygenase family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G12130.1); Has 8661 Blast hits to 8102 proteins in 1035 species: Archae - 4; Bacteria - 3767; Metazoa - 1139; Fungi - 1126; Plants - 753; Viruses - 0; Other Eukaryotes - 1872 (source: NCBI BLink). protein_id AT1G12160.1p transcript_id AT1G12160.1 protein_id AT1G12160.1p transcript_id AT1G12160.1
At1g12170	chr1:004128607	0.0	C/4128607-4129701	AT1G12170.1 CDS F-box family protein [TAIR10] CDS gene_syn T28K15.9, T28K15_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G12190.1); Has 1693 Blast hits to 1645 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1691; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G12170.1p transcript_id AT1G12170.1 protein_id AT1G12170.1p transcript_id AT1G12170.1
At1g12180	chr1:004130454	0.0	W/4130454-4130499,4130604-4130917	AT1G12180.1 CDS 14.7 kDa heat shock-like protein [TAIR10] CDS gene_syn T28K15.15, T28K15_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G47600.1); Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12180.1p transcript_id AT1G12180.1 protein_id AT1G12180.1p transcript_id AT1G12180.1
At1g12190	chr1:004132967	0.0	C/4132967-4134094	AT1G12190.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS gene_syn T28K15.8, T28K15_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12170.1); Has 1345 Blast hits to 1311 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1340; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G12190.1p transcript_id AT1G12190.1 protein_id AT1G12190.1p transcript_id AT1G12190.1
At1g12200	chr1:004137627	0.0	W/4137627-4138188,4138416-4138486,4138603-4138755,4138863-4138945,4139061-4139196,4139341-4139517,4139620-4139835	AT1G12200.1 CDS Flavin-binding monooxygenase family protein [TAIR10] CDS gene_syn T28K15.7, T28K15_7 go_process oxidation reduction|GO:0055114||IEA go_function flavin-containing monooxygenase activity|GO:0004499||IEA go_function FAD binding|GO:0050660||IEA go_function NADP or NADPH binding|GO:0050661||IEA go_component cellular_component|GO:0005575||ND go_function monooxygenase activity|GO:0004497||ISS product Flavin-binding monooxygenase family protein note Flavin-binding monooxygenase family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G62580.1); Has 13440 Blast hits to 12864 proteins in 1673 species: Archae - 50; Bacteria - 7104; Metazoa - 1242; Fungi - 1614; Plants - 842; Viruses - 0; Other Eukaryotes - 2588 (source: NCBI BLink). protein_id AT1G12200.1p transcript_id AT1G12200.1 protein_id AT1G12200.1p transcript_id AT1G12200.1
AT1G12200	chr1:004137627	0.0	W/4137627-4138188,4138416-4138486,4138603-4138755,4138863-4138945,4139061-4139340	AT1G12200.2 AT1G12200.2 CDS Flavin-binding monooxygenase family protein
At1g12210	chr1:004140948	0.0	W/4140948-4143605	AT1G12210.1 CDS RPS5-like 1 [TAIR10] CDS gene_syn RFL1, RPS5-like 1, T28K15.6, T28K15_6 gene RFL1 function RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5. go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_process defense response|GO:0006952||ISS go_process response to bacterium|GO:0009617|10101179|ISS product RPS5-like 1 note RPS5-like 1 (RFL1); FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, response to bacterium, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 18050 Blast hits to 15832 proteins in 638 species: Archae - 19; Bacteria - 1098; Metazoa - 2850; Fungi - 219; Plants - 13503; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink). protein_id AT1G12210.1p transcript_id AT1G12210.1 protein_id AT1G12210.1p transcript_id AT1G12210.1
AT1G12210	chr1:004141074	0.0	W/4141074-4143605	AT1G12210.2 AT1G12210.2 CDS RPS5-like 1
AT1G12210	chr1:004141074	0.0	W/4141074-4143605	AT1G12210.3 AT1G12210.3 CDS RPS5-like 1
At1g12211	chr1:004143866	0.0	C/4143866-4144114	AT1G12211.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G12211.1p transcript_id AT1G12211.1 protein_id AT1G12211.1p transcript_id AT1G12211.1
At1g12220	chr1:004145011	0.0	W/4145011-4147680	AT1G12220.1 CDS Disease resistance protein (CC-NBS-LRR class) family [TAIR10] CDS gene_syn DISEASE RESISTANCE PROTEIN RPS5, RESISTANT TO P. SYRINGAE 5, RPS5, T28K15.5, T28K15_5 gene RPS5 function Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB. go_component intracellular|GO:0005622|9724691|ISS go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_process defense response|GO:0006952|11846877|TAS go_process defense response|GO:0006952|9724691|IMP go_process plant-type hypersensitive response|GO:0009626|10224270|IMP go_process defense response to bacterium, incompatible interaction|GO:0009816|17277084|IDA go_function nucleotide binding|GO:0000166|9724691|IMP product Disease resistance protein (CC-NBS-LRR class) family note RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1); Has 17406 Blast hits to 16115 proteins in 670 species: Archae - 23; Bacteria - 856; Metazoa - 2611; Fungi - 230; Plants - 13400; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink). protein_id AT1G12220.1p transcript_id AT1G12220.1 protein_id AT1G12220.1p transcript_id AT1G12220.1
At1g12220	chr1:004145011	0.0	W/4145011-4147680	AT1G12220.2 CDS Disease resistance protein (CC-NBS-LRR class) family [TAIR10] CDS gene_syn DISEASE RESISTANCE PROTEIN RPS5, RESISTANT TO P. SYRINGAE 5, RPS5, T28K15.5, T28K15_5 gene RPS5 function Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB. go_component intracellular|GO:0005622|9724691|ISS go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_process defense response|GO:0006952|11846877|TAS go_process defense response|GO:0006952|9724691|IMP go_process plant-type hypersensitive response|GO:0009626|10224270|IMP go_process defense response to bacterium, incompatible interaction|GO:0009816|17277084|IDA go_function nucleotide binding|GO:0000166|9724691|IMP product Disease resistance protein (CC-NBS-LRR class) family note RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1). protein_id AT1G12220.2p transcript_id AT1G12220.2 protein_id AT1G12220.2p transcript_id AT1G12220.2
AT1G12220	chr1:004145374	0.0	W/4145374-4147680	AT1G12220.3 AT1G12220.3 CDS Disease resistance protein (CC-NBS-LRR class) family
At1g12230	chr1:004148050	0.0	W/4148050-4148103,4148194-4148335,4148739-4148817,4148910-4148975,4149080-4149155,4149250-4149333,4149427-4149531,4149621-4149701,4149777-4149841,4149936-4150005,4150079-4150254,4150339-4150477,4150562-4150708	AT1G12230.2 CDS Aldolase superfamily protein [TAIR10] CDS gene_syn T28K15.4, T28K15_4 go_process carbohydrate metabolic process|GO:0005975||IEA go_process metabolic process|GO:0008152||IEA go_function transaldolase activity|GO:0004801||ISS go_function zinc ion binding|GO:0008270|20018591|IDA product Aldolase superfamily protein note Aldolase superfamily protein; FUNCTIONS IN: transaldolase activity, zinc ion binding; INVOLVED IN: carbohydrate metabolic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase (InterPro:IPR001585). protein_id AT1G12230.2p transcript_id AT1G12230.2 protein_id AT1G12230.2p transcript_id AT1G12230.2
At1g12230	chr1:004148050	0.0	W/4148050-4148103,4148194-4148335,4148739-4148817,4149080-4149155,4149250-4149333,4149427-4149531,4149621-4149701,4149777-4149841,4149936-4150005,4150079-4150254,4150339-4150477,4150562-4150708	AT1G12230.1 CDS Aldolase superfamily protein [TAIR10] CDS gene_syn T28K15.4, T28K15_4 go_component chloroplast|GO:0009507|18431481|IDA go_process carbohydrate metabolic process|GO:0005975||IEA go_process 5-phosphoribose 1-diphosphate biosynthetic process|GO:0006015||IEA go_process metabolic process|GO:0008152||IEA go_process pentose-phosphate shunt, non-oxidative branch|GO:0009052||IEA go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA go_function transaldolase activity|GO:0004801||ISS go_function zinc ion binding|GO:0008270|20018591|IDA product Aldolase superfamily protein note Aldolase superfamily protein; FUNCTIONS IN: transaldolase activity, zinc ion binding; INVOLVED IN: glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, carbohydrate metabolic process, metabolic process, pentose-phosphate shunt, non-oxidative branch; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase (InterPro:IPR001585); Has 7355 Blast hits to 7354 proteins in 2152 species: Archae - 59; Bacteria - 5481; Metazoa - 167; Fungi - 228; Plants - 79; Viruses - 10; Other Eukaryotes - 1331 (source: NCBI BLink). protein_id AT1G12230.1p transcript_id AT1G12230.1 protein_id AT1G12230.1p transcript_id AT1G12230.1
At1g12240	chr1:004153699	0.0	W/4153699-4154101,4154430-4154438,4155090-4155334,4155840-4156457,4156564-4156976,4157062-4157149,4157239-4157457	AT1G12240.1 CDS Glycosyl hydrolases family 32 protein [TAIR10] CDS gene_syn ATBETAFRUCT4, T28K15.3, T28K15_3, VAC-INV, VACUOLAR INVERTASE gene ATBETAFRUCT4 go_component vacuole|GO:0005773|15539469|IDA go_component plant-type cell wall|GO:0009505|17526915|IDA go_process carbohydrate metabolic process|GO:0005975||IEA go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA go_component vacuole|GO:0005773|9332372|ISS go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS go_function beta-fructofuranosidase activity|GO:0004564|9332372|ISS product Glycosyl hydrolases family 32 protein note ATBETAFRUCT4; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3357 (InterPro:IPR021792), Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 32 protein (TAIR:AT1G62660.1); Has 4142 Blast hits to 4085 proteins in 1233 species: Archae - 18; Bacteria - 2511; Metazoa - 93; Fungi - 293; Plants - 1044; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink). protein_id AT1G12240.1p transcript_id AT1G12240.1 protein_id AT1G12240.1p transcript_id AT1G12240.1
At1g12244	chr1:004157719	0.0	W/4157719-4158039,4158119-4158291,4158367-4158435,4158618-4158669,4158744-4158893	AT1G12244.1 CDS Polynucleotidyl transferase, ribonuclease H-like superfamily protein [TAIR10] CDS go_component cytoplasm|GO:0005737||IEA go_component endomembrane system|GO:0012505||IEA go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA go_process DNA repair|GO:0006281||IEA go_process DNA recombination|GO:0006310||IEA go_process response to DNA damage stimulus|GO:0006974||IEA go_function nucleic acid binding|GO:0003676||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA product Polynucleotidyl transferase, ribonuclease H-like superfamily protein note Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nucleic acid binding; INVOLVED IN: DNA repair, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination, response to DNA damage stimulus; LOCATED IN: endomembrane system, cytoplasm; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G12244.1p transcript_id AT1G12244.1 protein_id AT1G12244.1p transcript_id AT1G12244.1
At1g12250	chr1:004159287	0.0	W/4159287-4159450,4159565-4159750,4159854-4159883,4160064-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.1 CDS Pentapeptide repeat-containing protein [TAIR10] CDS gene_syn T28K15.2, T28K15_2 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component thylakoid|GO:0009579|14729914|IDA go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentapeptide repeat-containing protein note Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134; Bacteria - 5724; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1589 (source: NCBI BLink). protein_id AT1G12250.1p transcript_id AT1G12250.1 protein_id AT1G12250.1p transcript_id AT1G12250.1
At1g12250	chr1:004159623	0.0	W/4159623-4159750,4159854-4159883,4160064-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.2 CDS Pentapeptide repeat-containing protein [TAIR10] CDS gene_syn T28K15.2, T28K15_2 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentapeptide repeat-containing protein note Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7775 Blast hits to 4220 proteins in 505 species: Archae - 143; Bacteria - 5794; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1598 (source: NCBI BLink). protein_id AT1G12250.2p transcript_id AT1G12250.2 protein_id AT1G12250.2p transcript_id AT1G12250.2
AT1G12250	chr1:004160089	0.0	W/4160089-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.3 AT1G12250.3 CDS Pentapeptide repeat-containing protein
AT1G12260	chr1:004163058	0.0	C/4163058-4163369,4163529-4163813,4163959-4164230,4164327-4164486	AT1G12260.2 AT1G12260.2 CDS NAC 007
At1g12260	chr1:004163058	0.0	C/4163058-4163813,4163959-4164230,4164327-4164486	AT1G12260.1 CDS NAC 007 [TAIR10] CDS gene_syn ANAC007, EMB2749, EMBRYO DEFECTIVE 2749, NAC 007, NAC007, T28K15.1, T28K15_1, VASCULAR RELATED NAC-DOMAIN PROTEIN 4, VND4 gene NAC007 function Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. go_component cellular_component|GO:0005575||ND go_process embryo development ending in seed dormancy|GO:0009793||NAS go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC 007 note NAC 007 (NAC007); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: Arabidopsis NAC domain containing protein 26 (TAIR:AT1G62700.1); Has 3158 Blast hits to 3153 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 2; Plants - 3027; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). protein_id AT1G12260.1p transcript_id AT1G12260.1 protein_id AT1G12260.1p transcript_id AT1G12260.1
At1g12270	chr1:004172105	0.0	W/4172105-4172983,4173119-4173407,4173550-4173635,4173737-4173960,4174045-4174111,4174211-4174270,4174462-4174575	AT1G12270.1 CDS stress-inducible protein, putative [TAIR10] CDS gene_syn F5O11.2, F5O11_2 go_function binding|GO:0005488||IEA go_process response to stress|GO:0006950||ISS product stress-inducible protein, putative note stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 37869 Blast hits to 17250 proteins in 1367 species: Archae - 1337; Bacteria - 11482; Metazoa - 9184; Fungi - 2650; Plants - 3694; Viruses - 39; Other Eukaryotes - 9483 (source: NCBI BLink). protein_id AT1G12270.1p transcript_id AT1G12270.1 protein_id AT1G12270.1p transcript_id AT1G12270.1
AT1G12280	chr1:004174875	0.0	C/4174875-4176301,4176401-4177445	AT1G12280.2 AT1G12280.2 CDS LRR and NB-ARC domains-containing disease resistance protein
At1g12280	chr1:004174875	0.0	C/4174875-4177559	AT1G12280.1 CDS LRR and NB-ARC domains-containing disease resistance protein [TAIR10] CDS gene_syn F5O11.34, F5O11_34 go_component endomembrane system|GO:0012505||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_process apoptosis|GO:0006915||IEA go_process defense response|GO:0006952||IEA go_function ATP binding|GO:0005524||IEA go_process defense response|GO:0006952||ISS product LRR and NB-ARC domains-containing disease resistance protein note LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26; Bacteria - 895; Metazoa - 2143; Fungi - 215; Plants - 14237; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). protein_id AT1G12280.1p transcript_id AT1G12280.1 protein_id AT1G12280.1p transcript_id AT1G12280.1
At1g12290	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.2 CDS Disease resistance protein (CC-NBS-LRR class) family [TAIR10] CDS gene_syn F5O11.3, F5O11_3 go_function ATP binding|GO:0005524||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_process defense response|GO:0006952||ISS product Disease resistance protein (CC-NBS-LRR class) family note Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; EXPRESSED IN: stem, inflorescence meristem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 2708 Blast hits to 2465 proteins in 164 species: Archae - 0; Bacteria - 155; Metazoa - 197; Fungi - 19; Plants - 2299; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). protein_id AT1G12290.2p transcript_id AT1G12290.2 protein_id AT1G12290.2p transcript_id AT1G12290.2
AT1G12290	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.3 AT1G12290.3 CDS Disease resistance protein (CC-NBS-LRR class) family
AT1G12290	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.4 AT1G12290.4 CDS Disease resistance protein (CC-NBS-LRR class) family
AT1G12290	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.5 AT1G12290.5 CDS Disease resistance protein (CC-NBS-LRR class) family
AT1G12290	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.7 AT1G12290.7 CDS Disease resistance protein (CC-NBS-LRR class) family
At1g12290	chr1:004178593	0.0	C/4178593-4181247	AT1G12290.1 CDS Disease resistance protein (CC-NBS-LRR class) family [TAIR10] CDS gene_syn F5O11.3, F5O11_3 go_function ATP binding|GO:0005524||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_process defense response|GO:0006952||ISS product Disease resistance protein (CC-NBS-LRR class) family note Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; EXPRESSED IN: stem, inflorescence meristem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 16903 Blast hits to 15496 proteins in 648 species: Archae - 22; Bacteria - 963; Metazoa - 2036; Fungi - 239; Plants - 13383; Viruses - 4; Other Eukaryotes - 256 (source: NCBI BLink). protein_id AT1G12290.1p transcript_id AT1G12290.1 protein_id AT1G12290.1p transcript_id AT1G12290.1
AT1G12290	chr1:004178593	0.0	C/4178593-4181247	AT1G12290.6 AT1G12290.6 CDS Disease resistance protein (CC-NBS-LRR class) family
At1g12294	chr1:004182132	0.0	C/4182132-4182299	AT1G12294.1 [TAIR10] miRNA gene_syn MIR472A, microRNA472A gene MIR472A function Encodes a microRNA that targets several CC-NBS-LRR family members. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUUCCUACUCCGCCCAUAC go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MIR472A (microRNA472A); miRNA transcript_id AT1G12294.1
At1g12300	chr1:004184163	0.0	C/4184163-4186076	AT1G12300.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F5O11.4, F5O11_4 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 69404 Blast hits to 15469 proteins in 318 species: Archae - 6; Bacteria - 74; Metazoa - 1057; Fungi - 1243; Plants - 64555; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink). protein_id AT1G12300.1p transcript_id AT1G12300.1 protein_id AT1G12300.1p transcript_id AT1G12300.1
At1g12310	chr1:004187500	0.0	C/4187500-4187946	AT1G12310.1 CDS Calcium-binding EF-hand family protein [TAIR10] CDS gene_syn F5O11.35, F5O11_35 go_component nucleus|GO:0005634|14617066|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function calcium ion binding|GO:0005509||IEA go_component cytoplasm|GO:0005737|19686372|IDA go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product Calcium-binding EF-hand family protein note Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G62820.1); Has 15156 Blast hits to 13043 proteins in 1439 species: Archae - 0; Bacteria - 35; Metazoa - 6065; Fungi - 3861; Plants - 3197; Viruses - 0; Other Eukaryotes - 1998 (source: NCBI BLink). protein_id AT1G12310.1p transcript_id AT1G12310.1 protein_id AT1G12310.1p transcript_id AT1G12310.1
At1g12320	chr1:004189424	0.0	W/4189424-4189483,4189631-4190209	AT1G12320.1 CDS ankyrin repeat/KH domain protein (DUF1442) [TAIR10] CDS gene_syn F5O11.5, F5O11_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1442) note Protein of unknown function (DUF1442); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1442) (TAIR:AT1G62840.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12320.1p transcript_id AT1G12320.1 protein_id AT1G12320.1p transcript_id AT1G12320.1
At1g12330	chr1:004194673	0.0	W/4194673-4194747,4195105-4196226,4196307-4196627	AT1G12330.1 CDS cyclin-dependent kinase-like protein, putative [TAIR10] CDS gene_syn F5O11.6, F5O11_6 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G12330.1p transcript_id AT1G12330.1 protein_id AT1G12330.1p transcript_id AT1G12330.1
At1g12340	chr1:004197396	0.0	W/4197396-4197443,4197518-4197699,4197779-4197901,4197996-4198032	AT1G12340.1 CDS Cornichon family protein [TAIR10] CDS gene_syn F5O11.7, F5O11_7 go_component membrane|GO:0016020||IEA go_process intracellular signaling pathway|GO:0023034||IEA go_component membrane|GO:0016020||ISS go_function molecular_function|GO:0003674||ND product Cornichon family protein note Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1); Has 611 Blast hits to 611 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 154; Plants - 92; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). protein_id AT1G12340.1p transcript_id AT1G12340.1 protein_id AT1G12340.1p transcript_id AT1G12340.1
At1g12350	chr1:004198870	0.0	W/4198870-4198999,4199084-4199201,4199300-4199344,4199445-4199530,4199633-4199685,4199784-4199843,4200005-4200106,4200191-4200310,4200394-4200633	AT1G12350.1 CDS 4-phospho-panto-thenoylcysteine synthetase [TAIR10] CDS gene_syn 4-phospho-panto-thenoylcysteine synthetase, ATCOAB, COAB, F5O11.36, F5O11_36 gene COAB function At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4 -phospho-N-pantothenoylcysteine (PPC) go_component chloroplast|GO:0009507||IEA go_process coenzyme A biosynthetic process|GO:0015937|12860978|IDA go_function catalytic activity|GO:0003824||ISS go_function phosphopantothenate--cysteine ligase activity|GO:0004632|12860978|IDA product 4-phospho-panto-thenoylcysteine synthetase note 4-phospho-panto-thenoylcysteine synthetase (COAB); FUNCTIONS IN: phosphopantothenate--cysteine ligase activity, catalytic activity; INVOLVED IN: coenzyme A biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DNA/pantothenate metabolism flavoprotein, C-terminal (InterPro:IPR007085); BEST Arabidopsis thaliana protein match is: DNA / pantothenate metabolism flavoprotein (TAIR:AT5G02080.1); Has 721 Blast hits to 697 proteins in 349 species: Archae - 42; Bacteria - 251; Metazoa - 127; Fungi - 134; Plants - 66; Viruses - 4; Other Eukaryotes - 97 (source: NCBI BLink). protein_id AT1G12350.1p transcript_id AT1G12350.1 protein_id AT1G12350.1p transcript_id AT1G12350.1
AT1G12350	chr1:004198870	0.0	W/4198870-4198999,4199084-4199201,4199300-4199344,4199445-4199530,4199633-4199685,4199784-4199843,4200005-4200106,4200191-4200310,4200394-4200633	AT1G12350.2 AT1G12350.2 CDS 4-phospho-panto-thenoylcysteine synthetase
At1g12360	chr1:004201172	0.0	W/4201172-4201244,4201952-4202010,4202114-4202195,4202288-4202366,4202448-4202498,4202594-4202690,4202775-4202807,4202973-4203098,4203175-4203366,4203511-4203594,4203684-4203782,4203865-4203938,4204172-4204268,4204495-4204620,4204712-4204807,4204891-4205010,4205089-4205163,4205257-4205456,4205702-4205792,4205895-4205984,4206088-4206144	AT1G12360.1 CDS Sec1/munc18-like (SM) proteins superfamily [TAIR10] CDS gene_syn F5O11.8, F5O11_8, KEU, keule gene KEU function encodes a Sec1 protein and expressed throughout the plant. physically interacts with Syntaxin1 and is required for cytokinesis. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component peripheral to membrane of membrane fraction|GO:0000300|11157980|IDA go_component cytosol|GO:0005829|11157980|IDA go_process cytokinesis|GO:0000910|11157980|IMP go_process protein secretion|GO:0009306||ISS go_function protein transporter activity|GO:0008565||ISS product Sec1/munc18-like (SM) proteins superfamily note keule (KEU); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, cytokinesis; LOCATED IN: cytosol, peripheral to membrane of membrane fraction, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT4G12120.1); Has 1791 Blast hits to 1770 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 744; Fungi - 510; Plants - 223; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink). protein_id AT1G12360.1p transcript_id AT1G12360.1 protein_id AT1G12360.1p transcript_id AT1G12360.1
At1g12370	chr1:004206500	0.0	C/4206500-4206685,4206798-4206869,4206944-4207025,4207112-4207152,4207243-4207279,4207368-4207525,4207641-4207881,4207971-4208317,4208534-4208842	AT1G12370.1 CDS photolyase 1 [TAIR10] CDS gene_syn F5O11.9, F5O11_9, PHR1, TYPE II CPD PHOTOLYASE, UV RESISTANCE 2, UVR2, photolyase 1 gene PHR1 function encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele go_component cellular_component|GO:0005575||ND go_process photoreactive repair|GO:0000719|9061951|IMP go_process photoreactive repair|GO:0000719|9750104|IMP go_process UV protection|GO:0009650|8990208|IMP go_function DNA photolyase activity|GO:0003913|8990208|IDA go_function DNA photolyase activity|GO:0003913|9061951|IDA product photolyase 1 note photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 1792 Blast hits to 1788 proteins in 474 species: Archae - 23; Bacteria - 644; Metazoa - 122; Fungi - 53; Plants - 107; Viruses - 39; Other Eukaryotes - 804 (source: NCBI BLink). protein_id AT1G12370.1p transcript_id AT1G12370.1 protein_id AT1G12370.1p transcript_id AT1G12370.1
AT1G12370	chr1:004206500	0.0	C/4206500-4206685,4206798-4206869,4206944-4207025,4207112-4207170,4207243-4207279,4207368-4207435,4207641-4207881,4207971-4208317,4208534-4208842	AT1G12370.3 AT1G12370.3 CDS photolyase 1
At1g12370	chr1:004206500	0.0	C/4206500-4206685,4206798-4206869,4206944-4207025,4207112-4207170,4207243-4207279,4207368-4207525,4207641-4207881,4207971-4208317,4208534-4208842	AT1G12370.2 CDS photolyase 1 [TAIR10] CDS gene_syn F5O11.9, F5O11_9, PHR1, TYPE II CPD PHOTOLYASE, UV RESISTANCE 2, UVR2, photolyase 1 gene PHR1 function encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele go_component cellular_component|GO:0005575||ND go_process photoreactive repair|GO:0000719|9061951|IMP go_process photoreactive repair|GO:0000719|9750104|IMP go_process UV protection|GO:0009650|8990208|IMP go_function DNA photolyase activity|GO:0003913|8990208|IDA go_function DNA photolyase activity|GO:0003913|9061951|IDA product photolyase 1 note photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 2452 Blast hits to 2448 proteins in 660 species: Archae - 33; Bacteria - 979; Metazoa - 129; Fungi - 60; Plants - 123; Viruses - 39; Other Eukaryotes - 1089 (source: NCBI BLink). protein_id AT1G12370.2p transcript_id AT1G12370.2 protein_id AT1G12370.2p transcript_id AT1G12370.2
At1g12380	chr1:004214499	0.0	C/4214499-4216880	AT1G12380.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5O11.10, F5O11_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G12380.1p transcript_id AT1G12380.1 protein_id AT1G12380.1p transcript_id AT1G12380.1
At1g12390	chr1:004220347	0.0	W/4220347-4220418,4220968-4221149,4221229-4221351,4221445-4221481	AT1G12390.1 CDS Cornichon family protein [TAIR10] CDS gene_syn F5O11.11, F5O11_11 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process intracellular signaling pathway|GO:0023034||IEA go_component membrane|GO:0016020||ISS go_function molecular_function|GO:0003674||ND product Cornichon family protein note Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12340.1); Has 617 Blast hits to 617 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 159; Plants - 93; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). protein_id AT1G12390.1p transcript_id AT1G12390.1 protein_id AT1G12390.1p transcript_id AT1G12390.1
At1g12400	chr1:004222296	0.0	W/4222296-4222330,4222423-4222603	AT1G12400.1 CDS Nucleotide excision repair, TFIIH, subunit TTDA [TAIR10] CDS gene_syn F5O11.12, F5O11_12 go_component endomembrane system|GO:0012505||IEA go_process nucleotide-excision repair|GO:0006289||IEA go_function DNA binding|GO:0003677||IEA product Nucleotide excision repair, TFIIH, subunit TTDA note Nucleotide excision repair, TFIIH, subunit TTDA; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA (InterPro:IPR009400); BEST Arabidopsis thaliana protein match is: Nucleotide excision repair, TFIIH, subunit TTDA (TAIR:AT1G62886.1); Has 174 Blast hits to 174 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G12400.1p transcript_id AT1G12400.1 protein_id AT1G12400.1p transcript_id AT1G12400.1
AT1G12400	chr1:004222296	0.0	W/4222296-4222330,4222423-4222603	AT1G12400.2 AT1G12400.2 CDS Nucleotide excision repair, TFIIH, subunit TTDA
AT1G12400	chr1:004222370	0.0	W/4222370-4222603	AT1G12400.3 AT1G12400.3 CDS Nucleotide excision repair, TFIIH, subunit TTDA
At1g12410	chr1:004223099	0.0	W/4223099-4223148,4223240-4223283,4223397-4223469,4223801-4223915,4224000-4224137,4224231-4224347,4224455-4224523,4224610-4224705,4224817-4224954	AT1G12410.1 CDS CLP protease proteolytic subunit 2 [TAIR10] CDS gene_syn CLP protease proteolytic subunit 2, CLP2, CLPR2, F5O11.13, F5O11_13, NCLPP2, NUCLEAR-ENCODED CLP PROTEASE P2 gene CLP2 function Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_function serine-type endopeptidase activity|GO:0004252||IEA go_component chloroplast thylakoid|GO:0009534|11278690|IDA go_component chloroplast stroma|GO:0009570|11278690|IDA go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA go_component plastoglobule|GO:0010287|16461379|IDA go_process chloroplast organization|GO:0009658|16766689|IMP product CLP protease proteolytic subunit 2 note CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink). protein_id AT1G12410.1p transcript_id AT1G12410.1 protein_id AT1G12410.1p transcript_id AT1G12410.1
At1g12411	chr1:004225321	0.0	C/4225321-4225482	AT1G12411.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G12411.1p transcript_id AT1G12411.1 protein_id AT1G12411.1p transcript_id AT1G12411.1
AT1G12420	chr1:004226673	0.0	C/4226673-4227029,4227116-4227220,4227323-4227895,4227979-4228046,4228130-4228136	AT1G12420.2 AT1G12420.2 CDS ACT domain repeat 8
At1g12420	chr1:004226673	0.0	C/4226673-4227029,4227116-4227220,4227323-4227895,4227979-4228046,4228130-4228244,4228327-4228372,4228856-4228917	AT1G12420.1 CDS ACT domain repeat 8 [TAIR10] CDS gene_syn ACR8, ACT domain repeat 8, F5O11.14, F5O11_14 gene ACR8 go_component cellular_component|GO:0005575||ND go_process response to abscisic acid stimulus|GO:0009737|12481063|IEP go_function amino acid binding|GO:0016597|12481063|ISS product ACT domain repeat 8 note ACT domain repeat 8 (ACR8); CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 7 (TAIR:AT4G22780.1); Has 2013 Blast hits to 1422 proteins in 371 species: Archae - 0; Bacteria - 1118; Metazoa - 0; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink). protein_id AT1G12420.1p transcript_id AT1G12420.1 protein_id AT1G12420.1p transcript_id AT1G12420.1
At1g12423	chr1:004231027	0.0	C/4231027-4231146	AT1G12423.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G12423.1p transcript_id AT1G12423.1 protein_id AT1G12423.1p transcript_id AT1G12423.1
At1g12430	chr1:004234122	0.0	C/4234122-4234285,4234364-4234492,4234560-4234703,4234798-4234923,4235016-4235141,4235250-4235342,4235433-4235571,4235675-4235806,4235889-4236023,4236111-4236254,4236345-4236548,4236661-4236749,4236864-4237013,4237153-4237306,4237386-4237793,4237890-4238012,4238097-4238197,4238354-4238552	AT1G12430.1 CDS armadillo repeat kinesin 3 [TAIR10] CDS gene_syn ARK3, PAK, armadillo repeat kinesin 3, phosphatidic acid kinase gene ARK3 function Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations. go_component chloroplast|GO:0009507||IEA go_process microtubule-based movement|GO:0007018||IEA go_function microtubule motor activity|GO:0003777||IEA go_function binding|GO:0005488||IEA go_function ATP binding|GO:0005524||IEA go_function microtubule motor activity|GO:0003777||ISS product armadillo repeat kinesin 3 note armadillo repeat kinesin 3 (ARK3); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 2 (TAIR:AT1G01950.1); Has 26314 Blast hits to 21250 proteins in 1081 species: Archae - 170; Bacteria - 1529; Metazoa - 12103; Fungi - 2761; Plants - 3107; Viruses - 18; Other Eukaryotes - 6626 (source: NCBI BLink). protein_id AT1G12430.1p transcript_id AT1G12430.1 protein_id AT1G12430.1p transcript_id AT1G12430.1
At1g12430	chr1:004234122	0.0	C/4234122-4234285,4234364-4234495,4234560-4234703,4234798-4234923,4235016-4235141,4235250-4235342,4235433-4235571,4235675-4235806,4235889-4236023,4236111-4236254,4236345-4236548,4236661-4236749,4236864-4237013,4237153-4237306,4237386-4237793,4237890-4238012,4238097-4238197,4238354-4238552	AT1G12430.2 CDS armadillo repeat kinesin 3 [TAIR10] CDS gene_syn ARK3, PAK, armadillo repeat kinesin 3, phosphatidic acid kinase gene ARK3 function Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations. go_component chloroplast|GO:0009507||IEA go_process microtubule-based movement|GO:0007018||IEA go_function microtubule motor activity|GO:0003777||IEA go_function binding|GO:0005488||IEA go_function ATP binding|GO:0005524||IEA go_function microtubule motor activity|GO:0003777||ISS product armadillo repeat kinesin 3 note armadillo repeat kinesin 3 (ARK3); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 2 (TAIR:AT1G01950.1). protein_id AT1G12430.2p transcript_id AT1G12430.2 protein_id AT1G12430.2p transcript_id AT1G12430.2
At1g12440	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.1 CDS A20/AN1-like zinc finger family protein [TAIR10] CDS gene_syn F5O11.17, F5O11_17 go_function DNA binding|GO:0003677||IEA go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product A20/AN1-like zinc finger family protein note A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2); Has 1075 Blast hits to 1057 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 9; Plants - 482; Viruses - 6; Other Eukaryotes - 126 (source: NCBI BLink). protein_id AT1G12440.1p transcript_id AT1G12440.1 protein_id AT1G12440.1p transcript_id AT1G12440.1
At1g12440	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.2 CDS A20/AN1-like zinc finger family protein [TAIR10] CDS gene_syn F5O11.17, F5O11_17 go_function DNA binding|GO:0003677||IEA go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product A20/AN1-like zinc finger family protein note A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2); Has 1075 Blast hits to 1057 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 9; Plants - 482; Viruses - 6; Other Eukaryotes - 126 (source: NCBI BLink). protein_id AT1G12440.2p transcript_id AT1G12440.2 protein_id AT1G12440.2p transcript_id AT1G12440.2
AT1G12440	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.3 AT1G12440.3 CDS A20/AN1-like zinc finger family protein
At1g12450	chr1:004244496	0.0	W/4244496-4244756,4244954-4245190,4245293-4245510,4245613-4245808	AT1G12450.1 CDS SNARE associated Golgi protein family [TAIR10] CDS gene_syn F5O11.19, F5O11_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product SNARE associated Golgi protein family note SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G22850.1); Has 1732 Blast hits to 1729 proteins in 535 species: Archae - 6; Bacteria - 860; Metazoa - 122; Fungi - 106; Plants - 250; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink). protein_id AT1G12450.1p transcript_id AT1G12450.1 protein_id AT1G12450.1p transcript_id AT1G12450.1
At1g12451	chr1:004246109	0.0	C/4246109-4246291	AT1G12451.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G12451.1p transcript_id AT1G12451.1 protein_id AT1G12451.1p transcript_id AT1G12451.1
AT1G12460	chr1:004247703	0.0	W/4247703-4248015,4248433-4248856,4248950-4250444	AT1G12460.2 AT1G12460.2 CDS Leucine-rich repeat protein kinase family protein
At1g12460	chr1:004247703	0.0	W/4247703-4248856,4248950-4250444	AT1G12460.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn F5O11.21, F5O11_21 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT1G62950.1); Has 167349 Blast hits to 109630 proteins in 4084 species: Archae - 101; Bacteria - 12513; Metazoa - 51063; Fungi - 7396; Plants - 77075; Viruses - 193; Other Eukaryotes - 19008 (source: NCBI BLink). protein_id AT1G12460.1p transcript_id AT1G12460.1 protein_id AT1G12460.1p transcript_id AT1G12460.1
At1g12470	chr1:004251359	0.0	W/4251359-4251521,4251640-4251852,4251947-4252086,4252177-4252272,4252620-4252687,4252783-4252884,4252997-4253141,4253257-4253400,4253507-4253626,4253770-4253826,4253907-4253966,4254114-4254221,4254380-4254522,4254718-4254796,4254905-4254967,4255060-4255190,4255276-4255381,4255566-4255754,4255926-4256153,4256253-4256408,4256531-4256692,4256826-4256942,4257025-4257201	AT1G12470.1 CDS zinc ion binding [TAIR10] CDS gene_syn F5O11.22, F5O11_22 go_function zinc ion binding|GO:0008270||IEA product zinc ion binding note zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pep3/Vps18/deep orange (InterPro:IPR007810), Zinc finger, RING-type (InterPro:IPR001841); Has 495 Blast hits to 471 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 170; Fungi - 162; Plants - 42; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). protein_id AT1G12470.1p transcript_id AT1G12470.1 protein_id AT1G12470.1p transcript_id AT1G12470.1
At1g12480	chr1:004257427	0.0	C/4257427-4257778,4257856-4258667,4258743-4259249	AT1G12480.1 CDS C4-dicarboxylate transporter/malic acid transport protein [TAIR10] CDS gene_syn CARBON DIOXIDE INSENSITIVE 3, CDI3, F5O11.23, F5O11_23, OZONE-SENSITIVE 1, OZS1, RADICAL-INDUCED CELL DEATH 3, RCD3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1 gene OZS1 function Encodes a membrane protein with 10 predicted transmembrane helices. SLAC1 is a multispanning membrane protein expressed predominantly in guard cells that plays a role in regulating cellular ion homeostasis and S-type anion currents. SLAC1 is important for normal stomatal closure in response to a variety of signals including elevated CO2, ozone, ABA, darkness, and humidity. SLAC1:GFP localizes to the plasma membrane. go_component plasma membrane|GO:0005886|18305482|IDA go_component integral to membrane|GO:0016021||ISS go_process anion transport|GO:0006820|18305484|IMP go_process cellular ion homeostasis|GO:0006873|18305482|IMP go_process response to humidity|GO:0009270|18305484|IMP go_process response to abscisic acid stimulus|GO:0009737|18305484|IMP go_process response to carbon dioxide|GO:0010037|18305484|IMP go_process stomatal movement|GO:0010118|18305484|IMP go_process response to ozone|GO:0010193|18305484|IMP go_process multicellular organismal water homeostasis|GO:0050891|18305484|IMP go_function transporter activity|GO:0005215||ISS product C4-dicarboxylate transporter/malic acid transport protein note OZONE-SENSITIVE 1 (OZS1); CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 3 (TAIR:AT5G24030.1); Has 903 Blast hits to 900 proteins in 365 species: Archae - 17; Bacteria - 650; Metazoa - 0; Fungi - 31; Plants - 165; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). protein_id AT1G12480.1p transcript_id AT1G12480.1 protein_id AT1G12480.1p transcript_id AT1G12480.1
At1g12490	chr1:004260783	0.0	W/4260783-4260937,4260966-4261869	AT1G12490.1 CDS F-box associated ubiquitination effector family protein [TAIR10] CDS gene_syn F5O11.24, F5O11_24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box associated ubiquitination effector family protein note F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1); Has 239 Blast hits to 239 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G12490.1p transcript_id AT1G12490.1 protein_id AT1G12490.1p transcript_id AT1G12490.1
At1g12500	chr1:004263542	0.0	C/4263542-4263955,4264286-4264957	AT1G12500.1 CDS Nucleotide-sugar transporter family protein [TAIR10] CDS gene_syn F5O11.25, F5O11_25 go_component membrane|GO:0016020||IEA go_function organic anion transmembrane transporter activity|GO:0008514||ISS product Nucleotide-sugar transporter family protein note Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT3G11320.1); Has 2763 Blast hits to 2761 proteins in 260 species: Archae - 6; Bacteria - 37; Metazoa - 632; Fungi - 440; Plants - 1334; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink). protein_id AT1G12500.1p transcript_id AT1G12500.1 protein_id AT1G12500.1p transcript_id AT1G12500.1
At1g12510	chr1:004266988	0.0	C/4266988-4267061	AT1G12510.1 [TAIR10] tRNA gene_syn 60116.TRNA-VAL-1, 61405.TRNA-VAL-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Val (anticodon: AAC) transcript_id AT1G12510.1
At1g12520	chr1:004267277	0.0	C/4267277-4267543,4267617-4267840,4268143-4268206	AT1G12520.3 CDS copper chaperone for SOD1 [TAIR10] CDS gene_syn ATCCS, CCS, COPPER/ZINC SUPEROXIDE DISMUTASE COPPER CHAPERONE, F5O11.26, F5O11_26, copper chaperone for SOD1 gene CCS function Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast|GO:0009507|15848163|IDA go_process cellular copper ion homeostasis|GO:0006878|15848163|TAS go_function superoxide dismutase activity|GO:0004784|15848163|IDA go_function superoxide dismutase activity|GO:0004784|15848163|IGI go_function superoxide dismutase activity|GO:0004784|16126858|IMP go_function superoxide dismutase copper chaperone activity|GO:0016532||ISS product copper chaperone for SOD1 note copper chaperone for SOD1 (CCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G12520.3p transcript_id AT1G12520.3 protein_id AT1G12520.3p transcript_id AT1G12520.3
At1g12520	chr1:004267277	0.0	C/4267277-4267543,4267617-4267840,4268143-4268277,4268375-4268438	AT1G12520.2 CDS copper chaperone for SOD1 [TAIR10] CDS gene_syn ATCCS, CCS, COPPER/ZINC SUPEROXIDE DISMUTASE COPPER CHAPERONE, F5O11.26, F5O11_26, copper chaperone for SOD1 gene CCS function Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast|GO:0009507|15848163|IDA go_process cellular copper ion homeostasis|GO:0006878|15848163|TAS go_function superoxide dismutase activity|GO:0004784|15848163|IDA go_function superoxide dismutase activity|GO:0004784|15848163|IGI go_function superoxide dismutase activity|GO:0004784|16126858|IMP go_function superoxide dismutase copper chaperone activity|GO:0016532||ISS product copper chaperone for SOD1 note copper chaperone for SOD1 (CCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G12520.2p transcript_id AT1G12520.2 protein_id AT1G12520.2p transcript_id AT1G12520.2
At1g12520	chr1:004267277	0.0	C/4267277-4267543,4267617-4267840,4268143-4268277,4268375-4268447,4268529-4268555,4268664-4268900	AT1G12520.1 CDS copper chaperone for SOD1 [TAIR10] CDS gene_syn ATCCS, CCS, COPPER/ZINC SUPEROXIDE DISMUTASE COPPER CHAPERONE, F5O11.26, F5O11_26, copper chaperone for SOD1 gene CCS function Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast|GO:0009507|15848163|IDA go_process cellular copper ion homeostasis|GO:0006878|15848163|TAS go_function superoxide dismutase activity|GO:0004784|15848163|IDA go_function superoxide dismutase activity|GO:0004784|15848163|IGI go_function superoxide dismutase activity|GO:0004784|16126858|IMP go_function superoxide dismutase copper chaperone activity|GO:0016532||ISS product copper chaperone for SOD1 note copper chaperone for SOD1 (CCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424), Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1); Has 3500 Blast hits to 3494 proteins in 885 species: Archae - 2; Bacteria - 672; Metazoa - 1229; Fungi - 394; Plants - 875; Viruses - 122; Other Eukaryotes - 206 (source: NCBI BLink). protein_id AT1G12520.1p transcript_id AT1G12520.1 protein_id AT1G12520.1p transcript_id AT1G12520.1
At1g12530	chr1:004269122	0.0	C/4269122-4269476,4269573-4269688,4270661-4270771	AT1G12530.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5O11.27, F5O11_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56420.1); Has 54 Blast hits to 53 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12530.1p transcript_id AT1G12530.1 protein_id AT1G12530.1p transcript_id AT1G12530.1
At1g12540	chr1:004272960	0.0	W/4272960-4273280,4273410-4273778,4273897-4273980	AT1G12540.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F5O11.28, F5O11_28 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G62975.1); Has 394 Blast hits to 394 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 387; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12540.1p transcript_id AT1G12540.1 protein_id AT1G12540.1p transcript_id AT1G12540.1
At1g12550	chr1:004274649	0.0	W/4274649-4275095,4275307-4275831	AT1G12550.1 CDS D-isomer specific 2-hydroxyacid dehydrogenase family protein [TAIR10] CDS gene_syn F5O11.29, F5O11_29 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA go_function cofactor binding|GO:0048037||IEA go_function NAD or NADH binding|GO:0051287||IEA go_component cellular_component|GO:0005575||ND go_function oxidoreductase activity|GO:0016491||ISS product D-isomer specific 2-hydroxyacid dehydrogenase family protein note D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT2G45630.2); Has 29393 Blast hits to 29385 proteins in 2729 species: Archae - 468; Bacteria - 18116; Metazoa - 729; Fungi - 1168; Plants - 597; Viruses - 5; Other Eukaryotes - 8310 (source: NCBI BLink). protein_id AT1G12550.1p transcript_id AT1G12550.1 protein_id AT1G12550.1p transcript_id AT1G12550.1
At1g12560	chr1:004276557	0.0	W/4276557-4276719,4276984-4277296,4277381-4277693	AT1G12560.1 CDS expansin A7 [TAIR10] CDS gene_syn ATEXP7, ATEXPA7, ATHEXP ALPHA 1.26, EXP7, EXPA7, F5O11.30, F5O11_30, expansin A7 gene EXPA7 function Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. go_component extracellular region|GO:0005576||IEA go_component endomembrane system|GO:0012505||IEA go_process unidimensional cell growth|GO:0009826|11641069|NAS go_process unidimensional cell growth|GO:0009826||ISS go_process plant-type cell wall loosening|GO:0009828|11641069|NAS go_process plant-type cell wall loosening|GO:0009828||ISS go_process plant-type cell wall modification involved in multidimensional cell growth|GO:0009831||ISS product expansin A7 note expansin A7 (EXPA7); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: sperm cell, root hair, root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A18 (TAIR:AT1G62980.1); Has 2192 Blast hits to 2189 proteins in 166 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 53; Plants - 2083; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). protein_id AT1G12560.1p transcript_id AT1G12560.1 protein_id AT1G12560.1p transcript_id AT1G12560.1
At1g12570	chr1:004278192	0.0	C/4278192-4278237,4278312-4279260,4279557-4279858,4280255-4280594,4280672-4280753	AT1G12570.1 CDS Glucose-methanol-choline (GMC) oxidoreductase family protein [TAIR10] CDS gene_syn F5O11.31, F5O11_31 go_component endomembrane system|GO:0012505||IEA go_process alcohol metabolic process|GO:0006066||IEA go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA go_function FAD binding|GO:0050660||IEA go_function aldehyde-lyase activity|GO:0016832||ISS product Glucose-methanol-choline (GMC) oxidoreductase family protein note Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 10555 Blast hits to 10382 proteins in 1112 species: Archae - 4; Bacteria - 3926; Metazoa - 806; Fungi - 1507; Plants - 299; Viruses - 12; Other Eukaryotes - 4001 (source: NCBI BLink). protein_id AT1G12570.1p transcript_id AT1G12570.1 protein_id AT1G12570.1p transcript_id AT1G12570.1
At1g12580	chr1:004283635	0.0	W/4283635-4284229,4284318-4284614,4284781-4285167,4285386-4285675	AT1G12580.1 CDS phosphoenolpyruvate carboxylase-related kinase 1 [TAIR10] CDS gene_syn F5O11.32, F5O11_32, PEPKR1, phosphoenolpyruvate carboxylase-related kinase 1 gene PEPKR1 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product phosphoenolpyruvate carboxylase-related kinase 1 note phosphoenolpyruvate carboxylase-related kinase 1 (PEPKR1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 34 (TAIR:AT5G19360.1); Has 122716 Blast hits to 120722 proteins in 3168 species: Archae - 154; Bacteria - 14954; Metazoa - 44101; Fungi - 12932; Plants - 28847; Viruses - 523; Other Eukaryotes - 21205 (source: NCBI BLink). protein_id AT1G12580.1p transcript_id AT1G12580.1 protein_id AT1G12580.1p transcript_id AT1G12580.1
At1g12590	chr1:004285887	0.0	C/4285887-4285958	AT1G12590.1 [TAIR10] tRNA gene_syn 60116.TRNA-GLY-1, 61405.TRNA-GLY-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Gly (anticodon: TCC) transcript_id AT1G12590.1
At1g12600	chr1:004286414	0.0	C/4286414-4286647,4286808-4286915,4287137-4287238,4287323-4287565,4287972-4288173,4288252-4288280,4288728-4288859	AT1G12600.1 CDS UDP-N-acetylglucosamine (UAA) transporter family [TAIR10] CDS gene_syn F5O11.33, F5O11_33 go_process transmembrane transport|GO:0055085||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product UDP-N-acetylglucosamine (UAA) transporter family note UDP-N-acetylglucosamine (UAA) transporter family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 2 (TAIR:AT4G23010.1); Has 1283 Blast hits to 1283 proteins in 272 species: Archae - 2; Bacteria - 86; Metazoa - 575; Fungi - 206; Plants - 224; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink). protein_id AT1G12600.1p transcript_id AT1G12600.1 protein_id AT1G12600.1p transcript_id AT1G12600.1
At1g12610	chr1:004290205	0.0	C/4290205-4290834	AT1G12610.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn DDF1, DWARF AND DELAYED FLOWERING 1, T12C24.14, T12C24_14 gene DDF1 function Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor. go_process response to salt stress|GO:0009651|14871311|IEP go_process response to salt stress|GO:0009651|18643985|IGI go_process regulation of gibberellin biosynthetic process|GO:0010371|14871311|IMP go_process cell growth|GO:0016049|14871311|IMP go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|14871311|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding|GO:0043565|18643985|IPI product Integrase-type DNA-binding superfamily protein note DWARF AND DELAYED FLOWERING 1 (DDF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G63030.2); Has 5207 Blast hits to 5205 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5202; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G12610.1p transcript_id AT1G12610.1 protein_id AT1G12610.1p transcript_id AT1G12610.1
AT1G12615	chr1:004294055	0.0	C/4294055-4294540	AT1G12615.1 AT1G12615.1 CDS pentatricopeptide (PPR) repeat protein
At1g12620	chr1:004294883	0.0	C/4294883-4296748	AT1G12620.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn T12C24.15, T12C24_15 go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 65829 Blast hits to 15121 proteins in 316 species: Archae - 4; Bacteria - 59; Metazoa - 1157; Fungi - 1233; Plants - 61014; Viruses - 0; Other Eukaryotes - 2362 (source: NCBI BLink). protein_id AT1G12620.1p transcript_id AT1G12620.1 protein_id AT1G12620.1p transcript_id AT1G12620.1
At1g12630	chr1:004298897	0.0	W/4298897-4299475	AT1G12630.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn T12C24.16, T12C24_16 function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function transcription activator activity|GO:0016563||ISS product Integrase-type DNA-binding superfamily protein note Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G52020.1); Has 5560 Blast hits to 5541 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 5552; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G12630.1p transcript_id AT1G12630.1 protein_id AT1G12630.1p transcript_id AT1G12630.1
At1g12640	chr1:004303586	0.0	C/4303586-4303723,4303812-4303930,4304014-4304077,4304188-4304273,4304360-4304768,4304870-4305090,4305210-4305265,4305371-4305666	AT1G12640.1 CDS MBOAT (membrane bound O-acyl transferase) family protein [TAIR10] CDS gene_syn T12C24.17, T12C24_17 go_component plasma membrane|GO:0005886|17644812|IDA go_component membrane|GO:0016020||ISS go_process biological_process|GO:0008150||ND go_function acyltransferase activity|GO:0008415||ISS product MBOAT (membrane bound O-acyl transferase) family protein note MBOAT (membrane bound O-acyl transferase) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT1G63050.1); Has 1204 Blast hits to 1199 proteins in 313 species: Archae - 0; Bacteria - 269; Metazoa - 625; Fungi - 142; Plants - 47; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). protein_id AT1G12640.1p transcript_id AT1G12640.1 protein_id AT1G12640.1p transcript_id AT1G12640.1
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.1 CDS rRNA biogenesis RRP36-like protein [TAIR10] CDS gene_syn T12C24.18, T12C24_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). protein_id AT1G12650.1p transcript_id AT1G12650.1 protein_id AT1G12650.1p transcript_id AT1G12650.1
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.2 CDS rRNA biogenesis RRP36-like protein [TAIR10] CDS gene_syn T12C24.18, T12C24_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G12650.2p transcript_id AT1G12650.2 protein_id AT1G12650.2p transcript_id AT1G12650.2
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.3 CDS rRNA biogenesis RRP36-like protein [TAIR10] CDS gene_syn T12C24.18, T12C24_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). protein_id AT1G12650.3p transcript_id AT1G12650.3 protein_id AT1G12650.3p transcript_id AT1G12650.3
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.4 CDS rRNA biogenesis RRP36-like protein [TAIR10] CDS gene_syn T12C24.18, T12C24_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). protein_id AT1G12650.4p transcript_id AT1G12650.4 protein_id AT1G12650.4p transcript_id AT1G12650.4
At1g12660	chr1:004308943	0.0	W/4308943-4309243,4309494-4309558	AT1G12660.1 CDS thionin-like protein [TAIR10] CDS gene_syn T12C24.19, T12C24_19 function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. go_component endomembrane system|GO:0012505||IEA go_process defense response|GO:0006952|18674922|ISS go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: central cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 37 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12660.1p transcript_id AT1G12660.1 protein_id AT1G12660.1p transcript_id AT1G12660.1
At1g12663	chr1:004310969	0.0	W/4310969-4311254,4311396-4311457	AT1G12663.1 CDS thionin-like protein [TAIR10] CDS function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. go_component endomembrane system|GO:0012505||IEA go_process defense response|GO:0006952|18674922|ISS product unknown protein note INVOLVED IN: defense response; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12672.2); Has 42 Blast hits to 41 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12663.1p transcript_id AT1G12663.1 protein_id AT1G12663.1p transcript_id AT1G12663.1
At1g12665	chr1:004312398	0.0	W/4312398-4312667	AT1G12665.1 CDS thionin-like protein [TAIR10] CDS function Encodes a Plant thionin family protein go_component endomembrane system|GO:0012505||IEA product unknown protein note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 1554 Blast hits to 382 proteins in 88 species: Archae - 6; Bacteria - 293; Metazoa - 49; Fungi - 201; Plants - 321; Viruses - 145; Other Eukaryotes - 539 (source: NCBI BLink). protein_id AT1G12665.1p transcript_id AT1G12665.1 protein_id AT1G12665.1p transcript_id AT1G12665.1
At1g12667	chr1:004313858	0.0	W/4313858-4314204	AT1G12667.1 [TAIR10] pseudogene
At1g12669	chr1:004315466	0.0	W/4315466-4315788,4315920-4315987	AT1G12669.1 [TAIR10] pseudogene
At1g12670	chr1:004316701	0.0	W/4316701-4317005	AT1G12670.1 [TAIR10] pseudogene
At1g12672	chr1:004318375	0.0	W/4318375-4318489,4318555-4318692,4318810-4318871	AT1G12672.2 CDS thionin-like protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). protein_id AT1G12672.2p transcript_id AT1G12672.2 protein_id AT1G12672.2p transcript_id AT1G12672.2
At1g12672	chr1:004318596	0.0	W/4318596-4318692,4318810-4318871	AT1G12672.1 CDS thionin-like protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12672.1p transcript_id AT1G12672.1 protein_id AT1G12672.1p transcript_id AT1G12672.1
At1g12680	chr1:004320123	0.0	C/4320123-4320484,4320623-4320919,4321516-4322269	AT1G12680.1 CDS phosphoenolpyruvate carboxylase-related kinase 2 [TAIR10] CDS gene_syn PEPKR2, T12C24.32, T12C24_32, phosphoenolpyruvate carboxylase-related kinase 2 gene PEPKR2 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product phosphoenolpyruvate carboxylase-related kinase 2 note phosphoenolpyruvate carboxylase-related kinase 2 (PEPKR2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 29 (TAIR:AT1G76040.2); Has 127165 Blast hits to 125151 proteins in 3799 species: Archae - 184; Bacteria - 15080; Metazoa - 45775; Fungi - 13042; Plants - 31031; Viruses - 550; Other Eukaryotes - 21503 (source: NCBI BLink). protein_id AT1G12680.1p transcript_id AT1G12680.1 protein_id AT1G12680.1p transcript_id AT1G12680.1
AT1G12700	chr1:004324419	0.0	C/4324419-4326275	AT1G12700.2 AT1G12700.2 CDS ATP binding;nucleic acid binding;helicases
AT1G12700	chr1:004324419	0.0	C/4324419-4326275	AT1G12700.3 AT1G12700.3 CDS ATP binding;nucleic acid binding;helicases
At1g12700	chr1:004324422	0.0	C/4324422-4326227	AT1G12700.1 CDS ATP binding;nucleic acid binding;helicases [TAIR10] CDS gene_syn T12C24.31, T12C24_31 go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_process biological_process|GO:0008150||ND product ATP binding;nucleic acid binding;helicases note ATP binding;nucleic acid binding;helicases; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 84744 Blast hits to 32036 proteins in 2584 species: Archae - 123; Bacteria - 11324; Metazoa - 2691; Fungi - 2451; Plants - 63733; Viruses - 4; Other Eukaryotes - 4418 (source: NCBI BLink). protein_id AT1G12700.1p transcript_id AT1G12700.1 protein_id AT1G12700.1p transcript_id AT1G12700.1
At1g12710	chr1:004326980	0.0	C/4326980-4327403,4327741-4327859,4327992-4328324	AT1G12710.1 CDS phloem protein 2-A12 [TAIR10] CDS gene_syn AtPP2-A12, PP2-A12, T12C24.23, T12C24_23, phloem protein 2-A12 gene PP2-A12 function This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function carbohydrate binding|GO:0030246|12529520|ISS product phloem protein 2-A12 note phloem protein 2-A12 (PP2-A12); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: phloem protein 2-A11 (TAIR:AT1G63090.1); Has 458 Blast hits to 452 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 456; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12710.1p transcript_id AT1G12710.1 protein_id AT1G12710.1p transcript_id AT1G12710.1
AT1G12710	chr1:004326980	0.0	C/4326980-4327529,4327741-4327859,4327992-4328324	AT1G12710.2 AT1G12710.2 CDS phloem protein 2-A12
At1g12720	chr1:004331062	0.0	W/4331062-4333220	AT1G12720.1 [TAIR10] mRNA
At1g12720	chr1:004331062	0.0	W/4331062-4333220	AT1G12720 [TAIR10] TE pseudo gene_syn T12C24.24, T12C24_24 note Transposable element gene, Mutator-like transposase family, has a 1.2e-40 P-value blast match to GB:AAA21566 mudrA of transposon="MuDR" (MuDr-element) (Zea mays)
At1g12725	chr1:004333383	0.0	C/4333383-4333426,4333508-4333805,4333869-4334033	AT1G12725.1 [TAIR10] mRNA
At1g12725	chr1:004333383	0.0	C/4333383-4334033	AT1G12725 [TAIR10] TE pseudo note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28570.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)
At1g12730	chr1:004334675	0.0	W/4334675-4334846,4334954-4335001,4335097-4335157,4335261-4335293,4335438-4335562,4335759-4335893,4336012-4336088,4336180-4336436,4336578-4336634,4336722-4336893,4336999-4337056,4337149-4337234,4337317-4337373,4337523-4337609	AT1G12730.1 CDS GPI transamidase subunit PIG-U [TAIR10] CDS gene_syn T12C24.26, T12C24_26 go_component endoplasmic reticulum membrane|GO:0005789||IEA go_component integral to membrane|GO:0016021||IEA go_process GPI anchor biosynthetic process|GO:0006506||IEA go_function molecular_function|GO:0003674||ND product GPI transamidase subunit PIG-U note GPI transamidase subunit PIG-U; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.1); Has 339 Blast hits to 333 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 121; Plants - 55; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). protein_id AT1G12730.1p transcript_id AT1G12730.1 protein_id AT1G12730.1p transcript_id AT1G12730.1
At1g12730	chr1:004335109	0.0	W/4335109-4335157,4335261-4335293,4335458-4335562,4335759-4335893,4336012-4336088,4336180-4336436,4336578-4336634,4336722-4336893,4336999-4337056,4337149-4337234,4337317-4337373,4337523-4337609	AT1G12730.2 CDS GPI transamidase subunit PIG-U [TAIR10] CDS gene_syn T12C24.26, T12C24_26 go_component endoplasmic reticulum membrane|GO:0005789||IEA go_component integral to membrane|GO:0016021||IEA go_process GPI anchor biosynthetic process|GO:0006506||IEA go_function molecular_function|GO:0003674||ND product GPI transamidase subunit PIG-U note GPI transamidase subunit PIG-U; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G12730.2p transcript_id AT1G12730.2 protein_id AT1G12730.2p transcript_id AT1G12730.2
At1g12740	chr1:004342462	0.0	W/4342462-4342658,4342723-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343969,4344065-4344171,4344257-4344384,4344476-4344569	AT1G12740.2 CDS cytochrome P450, family 87, subfamily A, polypeptide 2 [TAIR10] CDS gene_syn cytochrome P450, family 87, subfamily A, polypeptide 2, CYP87A2, T12C24.27, T12C24_27 gene CYP87A2 function encodes a protein with cytochrome P450 domain go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 87, subfamily A, polypeptide 2 note cytochrome P450, family 87, subfamily A, polypeptide 2 (CYP87A2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 708, subfamily A, polypeptide 3 (TAIR:AT1G78490.1). protein_id AT1G12740.2p transcript_id AT1G12740.2 protein_id AT1G12740.2p transcript_id AT1G12740.2
AT1G12740	chr1:004342462	0.0	W/4342462-4342658,4342741-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343969,4344047-4344171,4344257-4344384,4344476-4344569	AT1G12740.4 AT1G12740.4 CDS cytochrome P450, family 87, subfamily A, polypeptide 2
At1g12740	chr1:004342462	0.0	W/4342462-4342658,4342741-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343969,4344065-4344171,4344257-4344384,4344476-4344569	AT1G12740.1 CDS cytochrome P450, family 87, subfamily A, polypeptide 2 [TAIR10] CDS gene_syn cytochrome P450, family 87, subfamily A, polypeptide 2, CYP87A2, T12C24.27, T12C24_27 gene CYP87A2 function encodes a protein with cytochrome P450 domain go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 87, subfamily A, polypeptide 2 note cytochrome P450, family 87, subfamily A, polypeptide 2 (CYP87A2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 708, subfamily A, polypeptide 3 (TAIR:AT1G78490.1); Has 31076 Blast hits to 30988 proteins in 1655 species: Archae - 56; Bacteria - 5533; Metazoa - 10873; Fungi - 5392; Plants - 7791; Viruses - 3; Other Eukaryotes - 1428 (source: NCBI BLink). protein_id AT1G12740.1p transcript_id AT1G12740.1 protein_id AT1G12740.1p transcript_id AT1G12740.1
AT1G12740	chr1:004342462	0.0	W/4342462-4342658,4342741-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343980	AT1G12740.3 AT1G12740.3 CDS cytochrome P450, family 87, subfamily A, polypeptide 2
At1g12750	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.1 CDS RHOMBOID-like protein 6 [TAIR10] CDS gene_syn ATRBL6, RBL6, RHOMBOID-like protein 6, T12C24.28, T12C24_28 gene RBL6 go_component integral to membrane|GO:0016021||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_process biological_process|GO:0008150||ND product RHOMBOID-like protein 6 note RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink). protein_id AT1G12750.1p transcript_id AT1G12750.1 protein_id AT1G12750.1p transcript_id AT1G12750.1
At1g12750	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.3 CDS RHOMBOID-like protein 6 [TAIR10] CDS gene_syn ATRBL6, RBL6, RHOMBOID-like protein 6, T12C24.28, T12C24_28 gene RBL6 go_component integral to membrane|GO:0016021||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_process biological_process|GO:0008150||ND product RHOMBOID-like protein 6 note RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1). protein_id AT1G12750.3p transcript_id AT1G12750.3 protein_id AT1G12750.3p transcript_id AT1G12750.3
AT1G12750	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.4 AT1G12750.4 CDS RHOMBOID-like protein 6
AT1G12750	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.6 AT1G12750.6 CDS RHOMBOID-like protein 6
AT1G12750	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.7 AT1G12750.7 CDS RHOMBOID-like protein 6
At1g12750	chr1:004345390	0.0	C/4345390-4345407,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.2 CDS RHOMBOID-like protein 6 [TAIR10] CDS gene_syn ATRBL6, RBL6, RHOMBOID-like protein 6, T12C24.28, T12C24_28 gene RBL6 go_component integral to membrane|GO:0016021||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_process biological_process|GO:0008150||ND product RHOMBOID-like protein 6 note RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink). protein_id AT1G12750.2p transcript_id AT1G12750.2 protein_id AT1G12750.2p transcript_id AT1G12750.2
AT1G12750	chr1:004345481	0.0	C/4345481-4345713,4345809-4345972,4346453-4346688	AT1G12750.5 AT1G12750.5 CDS RHOMBOID-like protein 6
At1g12760	chr1:004348728	0.0	W/4348728-4349359,4349664-4349783,4349859-4349991,4350075-4350242,4350339-4350512	AT1G12760.1 CDS Zinc finger, C3HC4 type (RING finger) family protein [TAIR10] CDS gene_syn T12C24.29, T12C24_29 go_component chloroplast|GO:0009507||IEA go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA go_function zinc ion binding|GO:0008270||ISS product Zinc finger, C3HC4 type (RING finger) family protein note Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0; Bacteria - 6; Metazoa - 2638; Fungi - 764; Plants - 5094; Viruses - 23; Other Eukaryotes - 1348 (source: NCBI BLink). protein_id AT1G12760.1p transcript_id AT1G12760.1 protein_id AT1G12760.1p transcript_id AT1G12760.1
At1g12760	chr1:004348941	0.0	W/4348941-4349359,4349664-4349783,4349859-4349991,4350075-4350242,4350339-4350512	AT1G12760.2 CDS Zinc finger, C3HC4 type (RING finger) family protein [TAIR10] CDS gene_syn T12C24.29, T12C24_29 go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA go_function zinc ion binding|GO:0008270||ISS product Zinc finger, C3HC4 type (RING finger) family protein note Zinc finger, C3HC4 type (RING finger) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G12760.2p transcript_id AT1G12760.2 protein_id AT1G12760.2p transcript_id AT1G12760.2
At1g12770	chr1:004351888	0.0	W/4351888-4353543	AT1G12770.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn EMB1586, INCREASED SIZE EXCLUSION LIMIT 1, ISE1, embryo defective 1586 gene EMB1586 function Encodes a DEAD-box RNA helicase that localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata. go_process plasmodesma organization|GO:0009663|11874921|IMP go_component mitochondrion|GO:0005739|19805190|IDA go_process embryo development ending in seed dormancy|GO:0009793||NAS go_process plasmodesmata-mediated intercellular transport|GO:0010497|19805190|IMP go_function RNA helicase activity|GO:0003724|19805190|ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note embryo defective 1586 (EMB1586); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: plasmodesma organization, plasmodesmata-mediated intercellular transport, embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: embryo, root, flower, shoot meristem; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 38833 Blast hits to 38121 proteins in 2993 species: Archae - 753; Bacteria - 18819; Metazoa - 5837; Fungi - 4441; Plants - 2445; Viruses - 12; Other Eukaryotes - 6526 (source: NCBI BLink). protein_id AT1G12770.1p transcript_id AT1G12770.1 protein_id AT1G12770.1p transcript_id AT1G12770.1
AT1G12770	chr1:004351888	0.0	W/4351888-4353543	AT1G12770.2 AT1G12770.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g12775	chr1:004353906	0.0	W/4353906-4355840	AT1G12775.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS go_component mitochondrion|GO:0005739||IEA product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G12775.1p transcript_id AT1G12775.1 protein_id AT1G12775.1p transcript_id AT1G12775.1
At1g12780	chr1:004356124	0.0	C/4356124-4356208,4356292-4356383,4356466-4356548,4356636-4356945,4357199-4357300,4357412-4357547,4357640-4357689,4357923-4358120	AT1G12780.1 CDS UDP-D-glucose/UDP-D-galactose 4-epimerase 1 [TAIR10] CDS gene_syn A. THALIANA UDP-GLC 4-EPIMERASE 1, ATUGE1, F13K23.3, F13K23_3, UDP-D-glucose/UDP-D-galactose 4-epimerase 1, UGE1 gene UGE1 function Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. go_component plasma membrane|GO:0005886|17644812|IDA go_component cytosol|GO:0005829|16644739|IDA go_component cytosol|GO:0005829|8615692|TAS go_process response to stress|GO:0006950|17496119|IMP go_process galactose biosynthetic process|GO:0046369|8615692|IDA go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IDA go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IGI go_function UDP-glucose 4-epimerase activity|GO:0003978|17496119|IDA go_function UDP-glucose 4-epimerase activity|GO:0003978|8615692|IDA go_function UDP-glucose 4-epimerase activity|GO:0003978|8615692|IGI go_function protein dimerization activity|GO:0046983|16644739|IPI product UDP-D-glucose/UDP-D-galactose 4-epimerase 1 note UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress, galactose biosynthetic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (TAIR:AT1G63180.1); Has 42430 Blast hits to 42420 proteins in 2995 species: Archae - 799; Bacteria - 25009; Metazoa - 650; Fungi - 500; Plants - 1081; Viruses - 38; Other Eukaryotes - 14353 (source: NCBI BLink). protein_id AT1G12780.1p transcript_id AT1G12780.1 protein_id AT1G12780.1p transcript_id AT1G12780.1
At1g12790	chr1:004359597	0.0	C/4359597-4359746,4359898-4359981,4360067-4360107,4360195-4360289,4360380-4360475,4360558-4360646,4360735-4360862,4361153-4361222	AT1G12790.1 CDS DNA ligase-like protein [TAIR10] CDS gene_syn F13K23.4, F13K23_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product unknown protein note CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12790.1p transcript_id AT1G12790.1 protein_id AT1G12790.1p transcript_id AT1G12790.1
At1g12800	chr1:004361778	0.0	C/4361778-4361852,4361946-4362014,4362178-4362285,4362357-4362449,4362537-4362608,4362684-4362770,4362884-4363063,4363146-4363445,4363531-4363620,4363704-4363824,4363915-4364041,4364116-4364851,4364944-4365189	AT1G12800.1 CDS Nucleic acid-binding, OB-fold-like protein [TAIR10] CDS gene_syn F13K23.5, F13K23_5 go_component chloroplast|GO:0009507|18431481|IDA go_function RNA binding|GO:0003723||IEA go_function RNA binding|GO:0003723||ISS product Nucleic acid-binding, OB-fold-like protein note Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding proteins superfamily (TAIR:AT3G23700.1); Has 17110 Blast hits to 8844 proteins in 2496 species: Archae - 8; Bacteria - 12066; Metazoa - 261; Fungi - 174; Plants - 188; Viruses - 3; Other Eukaryotes - 4410 (source: NCBI BLink). protein_id AT1G12800.1p transcript_id AT1G12800.1 protein_id AT1G12800.1p transcript_id AT1G12800.1
At1g12805	chr1:004366728	0.0	W/4366728-4366955	AT1G12805.1 CDS nucleotide binding [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product nucleotide binding note nucleotide binding; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G12805.1p transcript_id AT1G12805.1 protein_id AT1G12805.1p transcript_id AT1G12805.1
At1g12810	chr1:004367332	0.0	W/4367332-4367374,4367494-4367791,4368020-4368118,4368472-4368520	AT1G12810.2 CDS proline-rich family protein [TAIR10] CDS gene_syn F13K23.6, F13K23_6 product proline-rich family protein note proline-rich family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 236 Blast hits to 228 proteins in 57 species: Archae - 0; Bacteria - 8; Metazoa - 108; Fungi - 38; Plants - 63; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G12810.2p transcript_id AT1G12810.2 protein_id AT1G12810.2p transcript_id AT1G12810.2
At1g12810	chr1:004367332	0.0	W/4367332-4367374,4367494-4367791,4368472-4368520	AT1G12810.1 CDS proline-rich family protein [TAIR10] CDS gene_syn F13K23.6, F13K23_6 product proline-rich family protein note proline-rich family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33520.1); Has 20080 Blast hits to 10426 proteins in 614 species: Archae - 4; Bacteria - 1877; Metazoa - 7835; Fungi - 2952; Plants - 4732; Viruses - 459; Other Eukaryotes - 2221 (source: NCBI BLink). protein_id AT1G12810.1p transcript_id AT1G12810.1 protein_id AT1G12810.1p transcript_id AT1G12810.1
At1g12820	chr1:004368879	0.0	C/4368879-4369664,4369757-4370252,4370329-4370780	AT1G12820.1 CDS auxin signaling F-box 3 [TAIR10] CDS gene_syn AFB3, F13K23.7, F13K23_7, auxin signaling F-box 3 gene AFB3 function Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. go_component cellular_component|GO:0005575||ND go_process response to molecule of bacterial origin|GO:0002237|16627744|IEP go_process pollen maturation|GO:0010152|18628351|IGI go_process stamen development|GO:0048443|18628351|IGI go_process lateral root development|GO:0048527|20142497|IMP go_process cellular response to nitrate|GO:0071249|20142497|IEP go_process primary root development|GO:0080022|20142497|IMP go_function ubiquitin-protein ligase activity|GO:0004842||ISS go_function auxin binding|GO:0010011|15917797|IGI product auxin signaling F-box 3 note auxin signaling F-box 3 (AFB3); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: auxin signaling F-box 2 (TAIR:AT3G26810.1); Has 2450 Blast hits to 1661 proteins in 170 species: Archae - 0; Bacteria - 4; Metazoa - 823; Fungi - 153; Plants - 1347; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G12820.1p transcript_id AT1G12820.1 protein_id AT1G12820.1p transcript_id AT1G12820.1
At1g12830	chr1:004374412	0.0	C/4374412-4375053	AT1G12830.1 CDS nucleolin [TAIR10] CDS gene_syn F13K23.8, F13K23_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 39778 Blast hits to 22088 proteins in 1060 species: Archae - 152; Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants - 2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI BLink). protein_id AT1G12830.1p transcript_id AT1G12830.1 protein_id AT1G12830.1p transcript_id AT1G12830.1
At1g12840	chr1:004375584	0.0	W/4375584-4375697,4375828-4375896,4375982-4376109,4376206-4376305,4376488-4376555,4376804-4376945,4377045-4377161,4377340-4377465,4377551-4377634,4377723-4377802,4378121-4378220	AT1G12840.1 CDS vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, ATVHA-C, DE-ETIOLATED 3, DET3, F13K23.9, F13K23_9, VACUOLAR ATP SYNTHASE SUBUNIT C gene DET3 function Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8. go_component plant-type vacuole|GO:0000325|16618929|IDA go_component vacuole|GO:0005773|14760709|IDA go_component vacuole|GO:0005773|15215502|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component vacuolar proton-transporting V-type ATPase, V1 domain|GO:0000221|10617574|IDA go_component vacuolar membrane|GO:0005774|16618929|IDA go_component plasma membrane|GO:0005886|10617574|IDA go_process lignin biosynthetic process|GO:0009809|16159327|IGI go_process unidimensional cell growth|GO:0009826|10617574|IMP go_process regulation of carbohydrate biosynthetic process|GO:0043255|16159327|IGI go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961|10617574|IGI product vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) note DE-ETIOLATED 3 (DET3); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: lignin biosynthetic process, regulation of carbohydrate biosynthetic process, unidimensional cell growth; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit C (InterPro:IPR004907); Has 563 Blast hits to 541 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 263; Fungi - 140; Plants - 72; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). protein_id AT1G12840.1p transcript_id AT1G12840.1 protein_id AT1G12840.1p transcript_id AT1G12840.1
At1g12845	chr1:004379023	0.0	C/4379023-4379382	AT1G12845.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G12845.1p transcript_id AT1G12845.1 protein_id AT1G12845.1p transcript_id AT1G12845.1
At1g12850	chr1:004380022	0.0	C/4380022-4380666,4381005-4381577	AT1G12850.1 CDS Phosphoglycerate mutase family protein [TAIR10] CDS gene_syn F13K23.10, F13K23_10 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_process metabolic process|GO:0008152||ISS go_function catalytic activity|GO:0003824||ISS product Phosphoglycerate mutase family protein note Phosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Uncharacterised conserved protein UCP036920, phosphoglycerate mutase, plant X4/Y4 (InterPro:IPR017070); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G26780.1); Has 1723 Blast hits to 1681 proteins in 525 species: Archae - 4; Bacteria - 974; Metazoa - 334; Fungi - 35; Plants - 147; Viruses - 2; Other Eukaryotes - 227 (source: NCBI BLink). protein_id AT1G12850.1p transcript_id AT1G12850.1 protein_id AT1G12850.1p transcript_id AT1G12850.1
At1g12855	chr1:004382223	0.0	W/4382223-4383611	AT1G12855.1 CDS F-box family protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA product F-box family protein note F-box family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G13200.1). protein_id AT1G12855.1p transcript_id AT1G12855.1 protein_id AT1G12855.1p transcript_id AT1G12855.1
At1g12860	chr1:004384758	0.0	W/4384758-4385642,4385724-4385936,4386019-4386189,4386309-4386392	AT1G12860.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F13K23.12, F13K23_12, ICE2, INDUCER OF CBF EXPRESSION 2, SCREAM 2, SCRM2 gene SCRM2 function Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. go_component nucleus|GO:0005634||IEA go_process guard mother cell differentiation|GO:0010444|18641265|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to freezing|GO:0050826|19026725|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note SCREAM 2 (SCRM2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to freezing, guard mother cell differentiation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4); Has 4150 Blast hits to 4134 proteins in 202 species: Archae - 0; Bacteria - 1; Metazoa - 48; Fungi - 52; Plants - 4003; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). protein_id AT1G12860.1p transcript_id AT1G12860.1 protein_id AT1G12860.1p transcript_id AT1G12860.1
AT1G12860	chr1:004384758	0.0	W/4384758-4385642,4385724-4385936,4386019-4386198	AT1G12860.2 AT1G12860.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
AT1G12860	chr1:004384758	0.0	W/4384758-4385723	AT1G12860.3 AT1G12860.3 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g12870	chr1:004387129	0.0	C/4387129-4387236,4387968-4389110	AT1G12870.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS gene_syn F13K23.13, F13K23_13 go_component plasma membrane|GO:0005886|17151019|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12855.1); Has 1934 Blast hits to 1913 proteins in 53 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1930; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G12870.1p transcript_id AT1G12870.1 protein_id AT1G12870.1p transcript_id AT1G12870.1
At1g12880	chr1:004390036	0.0	W/4390036-4390106,4390251-4390374,4390457-4390540,4390632-4390781,4390864-4391046	AT1G12880.1 CDS nudix hydrolase homolog 12 [TAIR10] CDS gene_syn F13K23.14, F13K23_14, NUDT12, atnudt12, nudix hydrolase homolog 12 gene NUDT12 go_function hydrolase activity|GO:0016787||IEA go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS product nudix hydrolase homolog 12 note nudix hydrolase homolog 12 (NUDT12); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 13 (TAIR:AT3G26690.2); Has 1294 Blast hits to 1293 proteins in 373 species: Archae - 0; Bacteria - 562; Metazoa - 265; Fungi - 111; Plants - 235; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). protein_id AT1G12880.1p transcript_id AT1G12880.1 protein_id AT1G12880.1p transcript_id AT1G12880.1
At1g12890	chr1:004391734	0.0	W/4391734-4392393	AT1G12890.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn F13K23.25 function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Integrase-type DNA-binding superfamily protein note Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18560.1); Has 5243 Blast hits to 5226 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5234; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G12890.1p transcript_id AT1G12890.1 protein_id AT1G12890.1p transcript_id AT1G12890.1
At1g12900	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393542-4393747	AT1G12900.2 CDS glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [TAIR10] CDS gene_syn F13K23.15, F13K23_15, GAPA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 gene GAPA-2 go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component apoplast|GO:0048046|18538804|IDA go_process glycolysis|GO:0006096||ISS go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS product glyceraldehyde 3-phosphate dehydrogenase A subunit 2 note glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: glycolysis; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24213 Blast hits to 24212 proteins in 6137 species: Archae - 36; Bacteria - 10763; Metazoa - 2201; Fungi - 2756; Plants - 3727; Viruses - 0; Other Eukaryotes - 4730 (source: NCBI BLink). protein_id AT1G12900.2p transcript_id AT1G12900.2 protein_id AT1G12900.2p transcript_id AT1G12900.2
At1g12900	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850,4394044-4394148,4394242-4394283	AT1G12900.1 CDS glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [TAIR10] CDS gene_syn F13K23.15, F13K23_15, GAPA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 gene GAPA-2 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component membrane|GO:0016020|17432890|IDA go_component apoplast|GO:0048046|18538804|IDA go_process glucose metabolic process|GO:0006006||IEA go_process oxidation reduction|GO:0055114||IEA go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA go_function NAD or NADH binding|GO:0051287||IEA go_process glycolysis|GO:0006096||ISS go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS product glyceraldehyde 3-phosphate dehydrogenase A subunit 2 note glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47; Bacteria - 10700; Metazoa - 2230; Fungi - 2778; Plants - 3753; Viruses - 0; Other Eukaryotes - 5196 (source: NCBI BLink). protein_id AT1G12900.1p transcript_id AT1G12900.1 protein_id AT1G12900.1p transcript_id AT1G12900.1
AT1G12900	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850,4394044-4394148,4394242-4394409	AT1G12900.5 AT1G12900.5 CDS glyceraldehyde 3-phosphate dehydrogenase A subunit 2
At1g12900	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850	AT1G12900.3 CDS glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [TAIR10] CDS gene_syn F13K23.15, F13K23_15, GAPA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 gene GAPA-2 go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component apoplast|GO:0048046|18538804|IDA go_process glucose metabolic process|GO:0006006||IEA go_process oxidation reduction|GO:0055114||IEA go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA go_function NAD or NADH binding|GO:0051287||IEA go_process glycolysis|GO:0006096||ISS go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS product glyceraldehyde 3-phosphate dehydrogenase A subunit 2 note glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G12900.3p transcript_id AT1G12900.3 protein_id AT1G12900.3p transcript_id AT1G12900.3
At1g12900	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850	AT1G12900.4 CDS glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [TAIR10] CDS gene_syn F13K23.15, F13K23_15, GAPA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 gene GAPA-2 go_process glucose metabolic process|GO:0006006||IEA go_process oxidation reduction|GO:0055114||IEA go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA go_function NAD or NADH binding|GO:0051287||IEA go_process glycolysis|GO:0006096||ISS go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS product glyceraldehyde 3-phosphate dehydrogenase A subunit 2 note glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1). protein_id AT1G12900.4p transcript_id AT1G12900.4 protein_id AT1G12900.4p transcript_id AT1G12900.4
At1g12910	chr1:004395114	0.0	C/4395114-4396154	AT1G12910.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn ANTHOCYANIN11, ATAN11, F13K23.16, F13K23_16, LIGHT-REGULATED WD 1, LWD1 gene ATAN11 function Encodes a protein with similarity to the petunia WD repeat protein an11. go_component cellular_component|GO:0005575||ND go_process anthocyanin biosynthetic process|GO:0009718|12369624|NAS go_process entrainment of circadian clock by photoperiod|GO:0043153|18676661|IEP go_process photoperiodism, flowering|GO:0048573|18676661|IMP go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note ANTHOCYANIN11 (ATAN11); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G26640.1); Has 4731 Blast hits to 4446 proteins in 351 species: Archae - 6; Bacteria - 291; Metazoa - 1848; Fungi - 1200; Plants - 767; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). protein_id AT1G12910.1p transcript_id AT1G12910.1 protein_id AT1G12910.1p transcript_id AT1G12910.1
At1g12920	chr1:004396555	0.0	C/4396555-4397859	AT1G12920.1 CDS eukaryotic release factor 1-2 [TAIR10] CDS gene_syn ERF1-2, F13K23.17, F13K23_17, eukaryotic release factor 1-2 gene ERF1-2 function Encodes a eukaryotic release factor one homolog. go_component plasma membrane|GO:0005886|17317660|IDA go_component translation release factor complex|GO:0018444||TAS go_process translational termination|GO:0006415|15474304|IGI go_process translational termination|GO:0006415||ISS go_function translation release factor activity|GO:0003747|15474304|IGI go_function translation release factor activity|GO:0003747||ISS product eukaryotic release factor 1-2 note eukaryotic release factor 1-2 (ERF1-2); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: translation release factor complex, plasma membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF1/aRF1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: eukaryotic release factor 1-3 (TAIR:AT3G26618.1); Has 1141 Blast hits to 1136 proteins in 380 species: Archae - 310; Bacteria - 0; Metazoa - 243; Fungi - 154; Plants - 143; Viruses - 3; Other Eukaryotes - 288 (source: NCBI BLink). protein_id AT1G12920.1p transcript_id AT1G12920.1 protein_id AT1G12920.1p transcript_id AT1G12920.1
At1g12930	chr1:004398588	0.0	C/4398588-4398824,4398916-4399032,4399105-4399262,4399347-4399458,4399548-4399735,4399914-4400006,4400176-4400363,4400657-4400742,4401047-4401196,4401304-4401439,4401616-4401695,4401779-4401892,4402145-4402225,4402518-4402652,4403083-4403206,4403332-4403388,4403776-4403837,4403968-4404096,4404285-4404341,4404439-4404522,4404608-4404727,4404818-4405024,4405107-4405205,4405292-4405495	AT1G12930.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn F13K23.18, F13K23_18 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G62600.1); Has 493 Blast hits to 488 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 137; Plants - 74; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). protein_id AT1G12930.1p transcript_id AT1G12930.1 protein_id AT1G12930.1p transcript_id AT1G12930.1
At1g12935	chr1:004406318	0.0	C/4406318-4406746	AT1G12935.1 [TAIR10] mRNA
At1g12935	chr1:004406318	0.0	C/4406318-4406746	AT1G12935 [TAIR10] TE pseudo note Transposable element gene, pseudogene, similar to putative polyprotein, blastp match of 48% identity and 1.9e-06 P-value to GP|13957647|gb|AAK50602.1|AC084404_27|AC084404 putative polyprotein {Oryza sativa}
At1g12938	chr1:004412887	0.0	W/4412887-4413057	AT1G12938.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G12938.1p transcript_id AT1G12938.1 protein_id AT1G12938.1p transcript_id AT1G12938.1
At1g12940	chr1:004416405	0.0	W/4416405-4417091,4417442-4417917,4417992-4418337	AT1G12940.1 CDS nitrate transporter2.5 [TAIR10] CDS gene_syn ATNRT2.5, F13K23.20, F13K23_20, NRT2.5, nitrate transporter2.5 gene NRT2.5 function member of High affinity nitrate transporter family go_component plasma membrane|GO:0005886|17317660|IDA go_process transmembrane transport|GO:0055085||IEA go_function nitrate transmembrane transporter activity|GO:0015112||ISS product nitrate transporter2.5 note nitrate transporter2.5 (NRT2.5); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: stem, inflorescence meristem; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 2:1 (TAIR:AT1G08090.1); Has 4805 Blast hits to 4611 proteins in 1220 species: Archae - 64; Bacteria - 3952; Metazoa - 78; Fungi - 287; Plants - 251; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink). protein_id AT1G12940.1p transcript_id AT1G12940.1 protein_id AT1G12940.1p transcript_id AT1G12940.1
At1g12950	chr1:004419849	0.0	W/4419849-4420214,4420525-4421066,4421167-4421253,4421512-4421568,4421658-4421896,4421995-4422113,4422212-4422298,4422391-4422462	AT1G12950.1 CDS root hair specific 2 [TAIR10] CDS gene_syn F13K23.21, F13K23_21, RELA/SPOT homolog 2, RHS3, ROOT HAIR SPECIFIC 3, RSH2, root hair specific 2 gene RSH2 go_component membrane|GO:0016020||IEA go_process drug transmembrane transport|GO:0006855||IEA go_process transmembrane transport|GO:0055085||IEA go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020||ISS go_function transporter activity|GO:0005215||ISS go_function antiporter activity|GO:0015297||ISS product root hair specific 2 note root hair specific 2 (RSH2); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: sperm cell, root hair, root; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 9730 Blast hits to 9684 proteins in 1960 species: Archae - 180; Bacteria - 6829; Metazoa - 143; Fungi - 326; Plants - 1351; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink). protein_id AT1G12950.1p transcript_id AT1G12950.1 protein_id AT1G12950.1p transcript_id AT1G12950.1
At1g12960	chr1:004422707	0.0	C/4422707-4422835,4422914-4422990,4423047-4423155	AT1G12960.1 CDS Ribosomal protein L18e/L15 superfamily protein [TAIR10] CDS gene_syn F13K23.22, F13K23_22 go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L18e/L15 superfamily protein note Ribosomal protein L18e/L15 superfamily protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT1G70600.1); Has 791 Blast hits to 789 proteins in 315 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 162; Plants - 138; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink). protein_id AT1G12960.1p transcript_id AT1G12960.1 protein_id AT1G12960.1p transcript_id AT1G12960.1
At1g12970	chr1:004423727	0.0	W/4423727-4424317,4424745-4424911,4424996-4425632	AT1G12970.1 CDS plant intracellular ras group-related LRR 3 [TAIR10] CDS gene_syn F13K23.23, F13K23_23, PIRL3, plant intracellular ras group-related LRR 3 gene PIRL3 function Encodes PIRL3, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. product plant intracellular ras group-related LRR 3 note plant intracellular ras group-related LRR 3 (PIRL3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1); Has 74858 Blast hits to 31563 proteins in 1228 species: Archae - 19; Bacteria - 7206; Metazoa - 30749; Fungi - 2417; Plants - 30057; Viruses - 17; Other Eukaryotes - 4393 (source: NCBI BLink). protein_id AT1G12970.1p transcript_id AT1G12970.1 protein_id AT1G12970.1p transcript_id AT1G12970.1
At1g12980	chr1:004429791	0.0	W/4429791-4430777	AT1G12980.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn DORNROSCHEN, DRN, ENHANCER OF SHOOT REGENERATION 1, ESR1, F3F19.1, F3F19_1 gene ESR1 function Encodes an AP2/ERF protein, is expressed in a subdomain of meristem stem cells, in lateral organ anlagen, and transiently in the distal domain of organ primordia. It is a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ESR1). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Can confer cytokinin-independent shoot formation and causes severe meristem defects when overexpressed in Arabidopsis root explants. Involved in controlling embryogenesis and embryo patterning by interaction with PHAVOLUTA. go_component nucleus|GO:0005634|19369397|IDA go_component nucleus|GO:0005634||ISS go_component cytosol|GO:0005829|19369397|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to cytokinin stimulus|GO:0009735|11752375|IEP go_process embryonic pattern specification|GO:0009880|17376809|IMP go_process organ morphogenesis|GO:0009887|11752375|IMP go_process specification of organ axis polarity|GO:0010084|12615942|IMP go_process cotyledon development|GO:0048825|17376809|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11752375|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Integrase-type DNA-binding superfamily protein note ENHANCER OF SHOOT REGENERATION 1 (ESR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DORNROSCHEN-like (TAIR:AT1G24590.1); Has 5974 Blast hits to 5668 proteins in 251 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 5957; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G12980.1p transcript_id AT1G12980.1 protein_id AT1G12980.1p transcript_id AT1G12980.1
At1g12990	chr1:004433973	0.0	W/4433973-4434053,4434455-4435552	AT1G12990.1 CDS beta-1,4-N-acetylglucosaminyltransferase family protein [TAIR10] CDS gene_syn F3F19.2, F3F19_2 go_component membrane|GO:0016020||IEA go_process protein amino acid N-linked glycosylation|GO:0006487||IEA go_function acetylglucosaminyltransferase activity|GO:0008375||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product beta-1,4-N-acetylglucosaminyltransferase family protein note beta-1,4-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: beta-1,4-N-acetylglucosaminyltransferase family protein (TAIR:AT1G67880.1); Has 1071 Blast hits to 1070 proteins in 91 species: Archae - 0; Bacteria - 41; Metazoa - 59; Fungi - 34; Plants - 127; Viruses - 4; Other Eukaryotes - 806 (source: NCBI BLink). protein_id AT1G12990.1p transcript_id AT1G12990.1 protein_id AT1G12990.1p transcript_id AT1G12990.1
At1g13000	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.1 CDS transmembrane protein, putative (DUF707) [TAIR10] CDS gene_syn F3F19.3, F3F19_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF707) note Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT3G26440.2); Has 334 Blast hits to 332 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G13000.1p transcript_id AT1G13000.1 protein_id AT1G13000.1p transcript_id AT1G13000.1
At1g13000	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.2 CDS transmembrane protein, putative (DUF707) [TAIR10] CDS gene_syn F3F19.3, F3F19_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF707) note Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT3G26440.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13000.2p transcript_id AT1G13000.2 protein_id AT1G13000.2p transcript_id AT1G13000.2
AT1G13000	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.4 AT1G13000.4 CDS transmembrane protein, putative (DUF707)
AT1G13000	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.5 AT1G13000.5 CDS transmembrane protein, putative (DUF707)
AT1G13000	chr1:004436858	0.0	C/4436858-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.3 AT1G13000.3 CDS transmembrane protein, putative (DUF707)
At1g13010	chr1:004440214	0.0	W/4440214-4440286	AT1G13010.1 [TAIR10] tRNA gene_syn 51346.TRNA-ARG-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Arg (anticodon: ACG) transcript_id AT1G13010.1
At1g13020	chr1:004440927	0.0	C/4440927-4440954,4441169-4441600,4442331-4443520	AT1G13020.1 CDS eukaryotic initiation factor 4B2 [TAIR10] CDS gene_syn EIF4B2, F3F19.4, F3F19_4, eukaryotic initiation factor 4B2 gene EIF4B2 function Encodes eIF4B2, eukaryotic initiation factor 4B2. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function translation initiation factor activity|GO:0003743|19493973|IDA go_function translation initiation factor activity|GO:0003743||ISS product eukaryotic initiation factor 4B2 note eukaryotic initiation factor 4B2 (EIF4B2); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4B1 (TAIR:AT3G26400.1); Has 40205 Blast hits to 18564 proteins in 1251 species: Archae - 53; Bacteria - 12943; Metazoa - 12538; Fungi - 2660; Plants - 4866; Viruses - 455; Other Eukaryotes - 6690 (source: NCBI BLink). protein_id AT1G13020.1p transcript_id AT1G13020.1 protein_id AT1G13020.1p transcript_id AT1G13020.1
At1g13030	chr1:004444284	0.0	C/4444284-4444474,4444553-4444703,4444818-4444967,4445061-4445132,4445222-4445413,4445493-4445533,4445620-4445806,4445926-4446003,4446158-4446224,4446329-4446502,4446579-4446839,4446923-4446987,4447081-4447278	AT1G13030.1 CDS sphere organelles protein-related [TAIR10] CDS gene_syn F3F19.5, F3F19_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product sphere organelles protein-related note sphere organelles protein-related; Has 14464 Blast hits to 9695 proteins in 837 species: Archae - 14; Bacteria - 1320; Metazoa - 4989; Fungi - 1376; Plants - 652; Viruses - 103; Other Eukaryotes - 6010 (source: NCBI BLink). protein_id AT1G13030.1p transcript_id AT1G13030.1 protein_id AT1G13030.1p transcript_id AT1G13030.1
At1g13040	chr1:004447647	0.0	W/4447647-4449200	AT1G13040.1 CDS Pentatricopeptide repeat (PPR-like) superfamily protein [TAIR10] CDS gene_syn F3F19.6, F3F19_6 go_component plasma membrane|GO:0005886|17151019|IDA go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR-like) superfamily protein note Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 55149 Blast hits to 14680 proteins in 295 species: Archae - 3; Bacteria - 38; Metazoa - 581; Fungi - 873; Plants - 52114; Viruses - 0; Other Eukaryotes - 1540 (source: NCBI BLink). protein_id AT1G13040.1p transcript_id AT1G13040.1 protein_id AT1G13040.1p transcript_id AT1G13040.1
AT1G13040	chr1:004447647	0.0	W/4447647-4449200	AT1G13040.2 AT1G13040.2 CDS Pentatricopeptide repeat (PPR-like) superfamily protein
At1g13050	chr1:004450568	0.0	W/4450568-4451521	AT1G13050.1 CDS proline-rich receptor-like kinase, putative [TAIR10] CDS gene_syn F3F19.7, F3F19_7 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). protein_id AT1G13050.1p transcript_id AT1G13050.1 protein_id AT1G13050.1p transcript_id AT1G13050.1
At1g13050	chr1:004450964	0.0	W/4450964-4451521	AT1G13050.2 CDS proline-rich receptor-like kinase, putative [TAIR10] CDS gene_syn F3F19.7, F3F19_7 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13050.2p transcript_id AT1G13050.2 protein_id AT1G13050.2p transcript_id AT1G13050.2
AT1G13050	chr1:004450964	0.0	W/4450964-4451521	AT1G13050.3 AT1G13050.3 CDS proline-rich receptor-like kinase, putative
At1g13060	chr1:004452641	0.0	W/4452641-4452760,4452855-4452984,4453044-4453115,4453279-4453385,4453882-4454016,4454114-4454217,4454340-4454440,4454536-4454663	AT1G13060.2 CDS 20S proteasome beta subunit E1 [TAIR10] CDS gene_syn 20S PROTEASOME BETA SUBUNIT PBE1, 20S proteasome beta subunit E1, F3F19.8, F3F19_8, PBE1 gene PBE1 function Encodes 20S proteasome beta subunit PBE1 (PBE1). go_function threonine-type endopeptidase activity|GO:0004298||IEA go_component proteasome complex|GO:0000502|20516081|IDA go_component proteasome core complex|GO:0005839|9373170|TAS go_component proteasome core complex|GO:0005839|9611183|TAS go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS go_function peptidase activity|GO:0008233||ISS product 20S proteasome beta subunit E1 note 20S proteasome beta subunit E1 (PBE1); FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: guard cell, pollen tube; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G26340.1). protein_id AT1G13060.2p transcript_id AT1G13060.2 protein_id AT1G13060.2p transcript_id AT1G13060.2
AT1G13060	chr1:004452641	0.0	W/4452641-4452760,4452855-4452984,4453044-4453115,4453279-4453385,4453882-4454016,4454114-4454217,4454340-4454440,4454536-4454663	AT1G13060.3 AT1G13060.3 CDS 20S proteasome beta subunit E1
At1g13060	chr1:004452641	0.0	W/4452641-4452760,4452855-4452984,4453279-4453385,4453882-4454016,4454114-4454217,4454340-4454440,4454536-4454663	AT1G13060.1 CDS 20S proteasome beta subunit E1 [TAIR10] CDS gene_syn 20S PROTEASOME BETA SUBUNIT PBE1, 20S proteasome beta subunit E1, F3F19.8, F3F19_8, PBE1 gene PBE1 function Encodes 20S proteasome beta subunit PBE1 (PBE1). go_process response to cadmium ion|GO:0046686|16502469|IEP go_function endopeptidase activity|GO:0004175||IEA go_function threonine-type endopeptidase activity|GO:0004298||IEA go_component proteasome complex|GO:0000502|20516081|IDA go_component proteasome core complex|GO:0005839|9373170|TAS go_component proteasome core complex|GO:0005839|9611183|TAS go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS go_function peptidase activity|GO:0008233||ISS product 20S proteasome beta subunit E1 note 20S proteasome beta subunit E1 (PBE1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: guard cell, cultured cell, pollen tube, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G26340.1); Has 6463 Blast hits to 6458 proteins in 614 species: Archae - 814; Bacteria - 515; Metazoa - 2076; Fungi - 1348; Plants - 839; Viruses - 0; Other Eukaryotes - 871 (source: NCBI BLink). protein_id AT1G13060.1p transcript_id AT1G13060.1 protein_id AT1G13060.1p transcript_id AT1G13060.1
At1g13070	chr1:004455477	0.0	W/4455477-4457099	AT1G13070.1 [TAIR10] pseudogene
At1g13080	chr1:004459212	0.0	W/4459212-4460108,4460196-4460807	AT1G13080.1 CDS cytochrome P450, family 71, subfamily B, polypeptide 2 [TAIR10] CDS gene_syn cytochrome P450, family 71, subfamily B, polypeptide 2, CYP71B2, CYTOCHROME P450 MONOOXYGENASE 71B2, F3F19.10, F3F19_10 gene CYP71B2 function cytochrome P450 monooxygenase go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_process heat acclimation|GO:0010286|16807682|IEP go_process response to cyclopentenone|GO:0010583|18334669|IEP go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 71, subfamily B, polypeptide 2 note cytochrome P450, family 71, subfamily B, polypeptide 2 (CYP71B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone, heat acclimation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 20 (TAIR:AT3G26180.1); Has 33312 Blast hits to 33067 proteins in 1707 species: Archae - 47; Bacteria - 3450; Metazoa - 12035; Fungi - 6950; Plants - 9630; Viruses - 3; Other Eukaryotes - 1197 (source: NCBI BLink). protein_id AT1G13080.1p transcript_id AT1G13080.1 protein_id AT1G13080.1p transcript_id AT1G13080.1
At1g13080	chr1:004459493	0.0	W/4459493-4459569,4459643-4460108,4460196-4460807	AT1G13080.2 CDS cytochrome P450, family 71, subfamily B, polypeptide 2 [TAIR10] CDS gene_syn cytochrome P450, family 71, subfamily B, polypeptide 2, CYP71B2, CYTOCHROME P450 MONOOXYGENASE 71B2, F3F19.10, F3F19_10 gene CYP71B2 function cytochrome P450 monooxygenase go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_process heat acclimation|GO:0010286|16807682|IEP go_process response to cyclopentenone|GO:0010583|18334669|IEP go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 71, subfamily B, polypeptide 2 note cytochrome P450, family 71, subfamily B, polypeptide 2 (CYP71B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone, heat acclimation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 20 (TAIR:AT3G26180.1); Has 32035 Blast hits to 31943 proteins in 1691 species: Archae - 47; Bacteria - 3431; Metazoa - 11477; Fungi - 6850; Plants - 9043; Viruses - 3; Other Eukaryotes - 1184 (source: NCBI BLink). protein_id AT1G13080.2p transcript_id AT1G13080.2 protein_id AT1G13080.2p transcript_id AT1G13080.2
At1g13090	chr1:004461846	0.0	W/4461846-4462730,4462813-4463400	AT1G13090.1 CDS cytochrome P450, family 71, subfamily B, polypeptide 28 [TAIR10] CDS gene_syn cytochrome P450, family 71, subfamily B, polypeptide 28, CYP71B28, F3F19.11, F3F19_11 gene CYP71B28 function putative cytochrome P450 go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 71, subfamily B, polypeptide 28 note cytochrome P450, family 71, subfamily B, polypeptide 28 (CYP71B28); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT3G26830.1); Has 32313 Blast hits to 32069 proteins in 1664 species: Archae - 46; Bacteria - 2999; Metazoa - 11820; Fungi - 6857; Plants - 9495; Viruses - 0; Other Eukaryotes - 1096 (source: NCBI BLink). protein_id AT1G13090.1p transcript_id AT1G13090.1 protein_id AT1G13090.1p transcript_id AT1G13090.1
At1g13100	chr1:004463983	0.0	W/4463983-4464867,4464951-4465538	AT1G13100.1 CDS cytochrome P450, family 71, subfamily B, polypeptide 29 [TAIR10] CDS gene_syn cytochrome P450, family 71, subfamily B, polypeptide 29, CYP71B29, F3F19.12, F3F19_12 gene CYP71B29 function putative cytochrome P450 go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 71, subfamily B, polypeptide 29 note cytochrome P450, family 71, subfamily B, polypeptide 29 (CYP71B29); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 28 (TAIR:AT1G13090.1); Has 32382 Blast hits to 32119 proteins in 1696 species: Archae - 46; Bacteria - 3118; Metazoa - 11830; Fungi - 6731; Plants - 9528; Viruses - 0; Other Eukaryotes - 1129 (source: NCBI BLink). protein_id AT1G13100.1p transcript_id AT1G13100.1 protein_id AT1G13100.1p transcript_id AT1G13100.1
At1g13110	chr1:004467272	0.0	W/4467272-4468174,4468246-4468857	AT1G13110.1 CDS cytochrome P450, family 71 subfamily B, polypeptide 7 [TAIR10] CDS gene_syn cytochrome P450, family 71 subfamily B, polypeptide 7, CYP71B7, F3F19.13, F3F19_13 gene CYP71B7 function member of CYP71B go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 71 subfamily B, polypeptide 7 note cytochrome P450, family 71 subfamily B, polypeptide 7 (CYP71B7); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 23 (TAIR:AT3G26210.1); Has 32794 Blast hits to 32517 proteins in 1680 species: Archae - 46; Bacteria - 3235; Metazoa - 12124; Fungi - 6721; Plants - 9540; Viruses - 0; Other Eukaryotes - 1128 (source: NCBI BLink). protein_id AT1G13110.1p transcript_id AT1G13110.1 protein_id AT1G13110.1p transcript_id AT1G13110.1
At1g13120	chr1:004469334	0.0	C/4469334-4469621,4469701-4469829,4469917-4469985,4470071-4470154,4470237-4470305,4470499-4470580,4470886-4470956,4471039-4471148,4471270-4471619,4471747-4471895,4472002-4472113,4472214-4472369,4472492-4472656,4472774-4472775	AT1G13120.1 CDS nucleoporin GLE1-like protein [TAIR10] CDS gene_syn F3F19.14, F3F19_14, emb1745, embryo defective 1745 gene emb1745 go_component nuclear pore|GO:0005643||IEA go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function molecular_function|GO:0003674||ND product embryo defective 1745 note embryo defective 1745 (emb1745); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GLE1-like (InterPro:IPR012476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05523.1); Has 36705 Blast hits to 24548 proteins in 2114 species: Archae - 242; Bacteria - 8583; Metazoa - 12421; Fungi - 3107; Plants - 1525; Viruses - 221; Other Eukaryotes - 10606 (source: NCBI BLink). protein_id AT1G13120.1p transcript_id AT1G13120.1 protein_id AT1G13120.1p transcript_id AT1G13120.1
At1g13130	chr1:004474726	0.0	W/4474726-4475151,4476425-4476672,4476752-4477272,4477357-4477820	AT1G13130.1 CDS Cellulase (glycosyl hydrolase family 5) protein [TAIR10] CDS gene_syn F3F19.15, F3F19_15 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product Cellulase (glycosyl hydrolase family 5) protein note Cellulase (glycosyl hydrolase family 5) protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Cellulase (glycosyl hydrolase family 5) protein (TAIR:AT3G26140.1); Has 343 Blast hits to 335 proteins in 115 species: Archae - 2; Bacteria - 129; Metazoa - 0; Fungi - 78; Plants - 115; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G13130.1p transcript_id AT1G13130.1 protein_id AT1G13130.1p transcript_id AT1G13130.1
At1g13140	chr1:004478667	0.0	C/4478667-4479433,4479512-4480271	AT1G13140.2 CDS cytochrome P450, family 86, subfamily C, polypeptide 3 [TAIR10] CDS gene_syn cytochrome P450, family 86, subfamily C, polypeptide 3, CYP86C3, F3F19.16, F3F19_16 gene CYP86C3 function member of CYP86C go_component endomembrane system|GO:0012505||IEA go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 86, subfamily C, polypeptide 3 note cytochrome P450, family 86, subfamily C, polypeptide 3 (CYP86C3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, cauline leaf, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily C, polypeptide 4 (TAIR:AT1G13150.1). protein_id AT1G13140.2p transcript_id AT1G13140.2 protein_id AT1G13140.2p transcript_id AT1G13140.2
At1g13140	chr1:004478667	0.0	C/4478667-4480271	AT1G13140.1 CDS cytochrome P450, family 86, subfamily C, polypeptide 3 [TAIR10] CDS gene_syn cytochrome P450, family 86, subfamily C, polypeptide 3, CYP86C3, F3F19.16, F3F19_16 gene CYP86C3 function member of CYP86C go_component endomembrane system|GO:0012505||IEA go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 86, subfamily C, polypeptide 3 note cytochrome P450, family 86, subfamily C, polypeptide 3 (CYP86C3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, cauline leaf, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily C, polypeptide 4 (TAIR:AT1G13150.1); Has 28771 Blast hits to 28679 proteins in 1489 species: Archae - 44; Bacteria - 2446; Metazoa - 10818; Fungi - 6442; Plants - 7961; Viruses - 3; Other Eukaryotes - 1057 (source: NCBI BLink). protein_id AT1G13140.1p transcript_id AT1G13140.1 protein_id AT1G13140.1p transcript_id AT1G13140.1
AT1G13143	chr1:004479133	0.0	W/4479133-4479273,4479451-4479612	AT1G13143.1 AT1G13143.1 CDS hypothetical protein
At1g13145	chr1:004480860	0.0	W/4480860-4481334	AT1G13145.1 [TAIR10] pseudogene
At1g13150	chr1:004481995	0.0	C/4481995-4483584	AT1G13150.1 CDS cytochrome P450, family 86, subfamily C, polypeptide 4 [TAIR10] CDS gene_syn cytochrome P450, family 86, subfamily C, polypeptide 4, CYP86C4, F3F19.17, F3F19_17 gene CYP86C4 function member of CYP86C go_component endomembrane system|GO:0012505||IEA go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 86, subfamily C, polypeptide 4 note cytochrome P450, family 86, subfamily C, polypeptide 4 (CYP86C4); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily C, polypeptide 3 (TAIR:AT1G13140.1); Has 28361 Blast hits to 28269 proteins in 1476 species: Archae - 44; Bacteria - 2374; Metazoa - 10721; Fungi - 6214; Plants - 7984; Viruses - 3; Other Eukaryotes - 1021 (source: NCBI BLink). protein_id AT1G13150.1p transcript_id AT1G13150.1 protein_id AT1G13150.1p transcript_id AT1G13150.1
At1g13160	chr1:004484634	0.0	W/4484634-4485038,4485168-4485335,4485425-4485558,4485651-4485789,4486018-4486164,4486242-4486304,4486430-4486525,4486598-4486657,4486738-4486812,4486906-4486959,4487062-4487163,4487246-4487860,4487948-4488046,4488131-4488388	AT1G13160.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn F3F19.18, F3F19_18 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT4G31520.1); Has 29206 Blast hits to 13573 proteins in 931 species: Archae - 207; Bacteria - 10267; Metazoa - 6952; Fungi - 3668; Plants - 1163; Viruses - 549; Other Eukaryotes - 6400 (source: NCBI BLink). protein_id AT1G13160.1p transcript_id AT1G13160.1 protein_id AT1G13160.1p transcript_id AT1G13160.1
At1g13170	chr1:004488826	0.0	C/4488826-4489014,4489115-4489459,4489532-4489840,4489996-4490151,4490267-4490790,4490951-4491035,4491281-4491634,4491727-4492278	AT1G13170.2 CDS OSBP(oxysterol binding protein)-related protein 1D [TAIR10] CDS gene_syn F3F19.19, F3F19_19, ORP1D, OSBP(oxysterol binding protein)-related protein 1D gene ORP1D go_process steroid metabolic process|GO:0008202||IEA go_process steroid metabolic process|GO:0008202||ISS go_function oxysterol binding|GO:0008142||ISS product OSBP(oxysterol binding protein)-related protein 1D note OSBP(oxysterol binding protein)-related protein 1D (ORP1D); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1). protein_id AT1G13170.2p transcript_id AT1G13170.2 protein_id AT1G13170.2p transcript_id AT1G13170.2
At1g13170	chr1:004488826	0.0	C/4488826-4489014,4489115-4489459,4489532-4489840,4489996-4490151,4490330-4490790,4490951-4491035,4491281-4491634,4491727-4492278	AT1G13170.1 CDS OSBP(oxysterol binding protein)-related protein 1D [TAIR10] CDS gene_syn F3F19.19, F3F19_19, ORP1D, OSBP(oxysterol binding protein)-related protein 1D gene ORP1D go_process steroid metabolic process|GO:0008202||IEA go_process steroid metabolic process|GO:0008202||ISS go_function oxysterol binding|GO:0008142||ISS product OSBP(oxysterol binding protein)-related protein 1D note OSBP(oxysterol binding protein)-related protein 1D (ORP1D); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1); Has 2556 Blast hits to 2421 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 1277; Fungi - 705; Plants - 299; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink). protein_id AT1G13170.1p transcript_id AT1G13170.1 protein_id AT1G13170.1p transcript_id AT1G13170.1
At1g13180	chr1:004495394	0.0	W/4495394-4495440,4495535-4495994,4496367-4496513,4496765-4496857,4496993-4497112,4497534-4497644,4497725-4497850,4497934-4498032,4498124-4498204	AT1G13180.1 CDS Actin-like ATPase superfamily protein [TAIR10] CDS gene_syn ACTIN-RELATED PROTEIN 3, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ARP3, ATARP3, DIS1, DISTORTED TRICHOMES 1, F3F19.20, F3F19_20 gene DIS1 function Mutant has defect in trichome cell expansion and actin organization resulting in a distorted trichome phenotype. go_function actin binding|GO:0003779||IEA go_function ATP binding|GO:0005524||IEA go_component Arp2/3 protein complex|GO:0005885|12906796|TAS go_process cell morphogenesis|GO:0000902|12837952|IMP go_process actin filament organization|GO:0007015|10572033|IMP go_process multidimensional cell growth|GO:0009825|15012260|IMP go_process trichome morphogenesis|GO:0010090|15012260|IMP go_function structural constituent of cytoskeleton|GO:0005200||ISS product Actin-like ATPase superfamily protein note DISTORTED TRICHOMES 1 (DIS1); FUNCTIONS IN: actin binding, structural constituent of cytoskeleton, ATP binding; INVOLVED IN: actin filament organization, multidimensional cell growth, cell morphogenesis, trichome morphogenesis; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000), Actin-related protein 3 (InterPro:IPR015623); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 12406 Blast hits to 12242 proteins in 2483 species: Archae - 6; Bacteria - 5; Metazoa - 5339; Fungi - 3178; Plants - 1454; Viruses - 2; Other Eukaryotes - 2422 (source: NCBI BLink). protein_id AT1G13180.1p transcript_id AT1G13180.1 protein_id AT1G13180.1p transcript_id AT1G13180.1
At1g13190	chr1:004499633	0.0	W/4499633-4501354	AT1G13190.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F3F19.21, F3F19_21 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55670.1); Has 32447 Blast hits to 17825 proteins in 1064 species: Archae - 7; Bacteria - 12227; Metazoa - 10368; Fungi - 2543; Plants - 3608; Viruses - 174; Other Eukaryotes - 3520 (source: NCBI BLink). protein_id AT1G13190.1p transcript_id AT1G13190.1 protein_id AT1G13190.1p transcript_id AT1G13190.1
At1g13195	chr1:004501778	0.0	C/4501778-4501994,4502079-4502316,4502514-4502580,4502709-4502855	AT1G13195.2 CDS RING/U-box superfamily protein [TAIR10] CDS go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G24440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G13195.2p transcript_id AT1G13195.2 protein_id AT1G13195.2p transcript_id AT1G13195.2
At1g13195	chr1:004501778	0.0	C/4501778-4501994,4502079-4502316,4502514-4502580,4502709-4502871,4503250-4503347	AT1G13195.1 CDS RING/U-box superfamily protein [TAIR10] CDS go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G24440.1); Has 912 Blast hits to 912 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 25; Plants - 358; Viruses - 17; Other Eukaryotes - 131 (source: NCBI BLink). protein_id AT1G13195.1p transcript_id AT1G13195.1 protein_id AT1G13195.1p transcript_id AT1G13195.1
At1g13200	chr1:004507221	0.0	C/4507221-4508528	AT1G13200.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS gene_syn F3F19.23, F3F19_23 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12855.1); Has 1698 Blast hits to 1674 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1696; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G13200.1p transcript_id AT1G13200.1 protein_id AT1G13200.1p transcript_id AT1G13200.1
At1g13210	chr1:004509252	0.0	C/4509252-4509902,4509995-4510186,4510280-4510504,4510610-4510825,4510920-4511028,4511126-4511214,4511299-4511575,4511675-4511785,4511871-4512769,4512847-4513296,4513382-4513774	AT1G13210.1 CDS autoinhibited Ca2+/ATPase II [TAIR10] CDS gene_syn ACA.l, F3F19.24, F3F19_24, autoinhibited Ca2+/ATPase II gene ACA.l go_component plasma membrane|GO:0005886|17317660|IDA go_process ATP biosynthetic process|GO:0006754||IEA go_process phospholipid transport|GO:0015914||IEA go_function calmodulin binding|GO:0005516|11782485|ISS go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS product autoinhibited Ca2+/ATPase II note autoinhibited Ca2+/ATPase II (ACA.l); FUNCTIONS IN: calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: phospholipid transport, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G25610.1); Has 13380 Blast hits to 11644 proteins in 1631 species: Archae - 144; Bacteria - 4268; Metazoa - 3224; Fungi - 2114; Plants - 1115; Viruses - 0; Other Eukaryotes - 2515 (source: NCBI BLink). protein_id AT1G13210.1p transcript_id AT1G13210.1 protein_id AT1G13210.1p transcript_id AT1G13210.1
AT1G13220	chr1:004515660	0.0	W/4515660-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517382,4517573-4519482,4519699-4520071	AT1G13220.3 AT1G13220.3 CDS nuclear matrix constituent protein-related
At1g13220	chr1:004515660	0.0	W/4515660-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517415	AT1G13220.1 CDS nuclear matrix constituent protein-related [TAIR10] CDS gene_syn F3F19.25, F3F19_25, LINC2, LITTLE NUCLEI2 gene LINC2 function Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. go_component nucleoplasm|GO:0005654|17873096|IDA go_process nucleus organization|GO:0006997|17873096|IGI product nuclear matrix constituent protein-related note LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei3 (TAIR:AT1G68790.1); Has 107806 Blast hits to 52972 proteins in 2654 species: Archae - 1404; Bacteria - 16181; Metazoa - 50751; Fungi - 7829; Plants - 5203; Viruses - 291; Other Eukaryotes - 26147 (source: NCBI BLink). protein_id AT1G13220.1p transcript_id AT1G13220.1 protein_id AT1G13220.1p transcript_id AT1G13220.1
At1g13220	chr1:004515699	0.0	W/4515699-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517382,4517573-4519482,4519699-4520071	AT1G13220.2 CDS nuclear matrix constituent protein-related [TAIR10] CDS gene_syn F3F19.25, F3F19_25, LINC2, LITTLE NUCLEI2 gene LINC2 function Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. go_component nucleoplasm|GO:0005654|17873096|IDA go_process nucleus organization|GO:0006997|17873096|IGI product nuclear matrix constituent protein-related note LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei3 (TAIR:AT1G68790.1); Has 343402 Blast hits to 148924 proteins in 3995 species: Archae - 3820; Bacteria - 73706; Metazoa - 134029; Fungi - 26703; Plants - 17784; Viruses - 1471; Other Eukaryotes - 85889 (source: NCBI BLink). protein_id AT1G13220.2p transcript_id AT1G13220.2 protein_id AT1G13220.2p transcript_id AT1G13220.2
At1g13230	chr1:004520679	0.0	W/4520679-4520894,4521381-4522439	AT1G13230.1 CDS Leucine-rich repeat (LRR) family protein [TAIR10] CDS gene_syn F3F19.26, F3F19_26 function Encodes a leucine-rich repeat protein pii-2. Located in the endoplasmic reticulum/plasma membrane continuum in Arabidopsis roots. Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis. go_component chloroplast|GO:0009507|15028209|IDA go_component plasma membrane|GO:0005886|17397506|IDA go_process signal transduction|GO:0007165|11751054|IC go_process response to symbiotic fungus|GO:0009610|17397506|IMP go_process symbiosis, encompassing mutualism through parasitism|GO:0044403|17397506|IMP product Leucine-rich repeat (LRR) family protein note Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, response to symbiotic fungus, symbiosis, encompassing mutualism through parasitism; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G25670.1); Has 75840 Blast hits to 27072 proteins in 996 species: Archae - 26; Bacteria - 3700; Metazoa - 16664; Fungi - 635; Plants - 50198; Viruses - 0; Other Eukaryotes - 4617 (source: NCBI BLink). protein_id AT1G13230.1p transcript_id AT1G13230.1 protein_id AT1G13230.1p transcript_id AT1G13230.1
At1g13240	chr1:004522709	0.0	C/4522709-4522782	AT1G13240.1 [TAIR10] tRNA gene_syn 51346.TRNA-ILE-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ile (anticodon: AAT) transcript_id AT1G13240.1
At1g13245	chr1:004525852	0.0	C/4525852-4525977	AT1G13245.1 CDS ROTUNDIFOLIA like 17 [TAIR10] CDS gene_syn DEVIL 4, DVL4, ROTUNDIFOLIA like 17, RTFL17 gene RTFL17 go_process shoot development|GO:0048367|14871303|IMP go_function molecular_function|GO:0003674||ND product ROTUNDIFOLIA like 17 note ROTUNDIFOLIA like 17 (RTFL17); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 15 (TAIR:AT1G68825.2); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13245.1p transcript_id AT1G13245.1 protein_id AT1G13245.1p transcript_id AT1G13245.1
At1g13250	chr1:004528965	0.0	C/4528965-4530002	AT1G13250.1 CDS galacturonosyltransferase-like 3 [TAIR10] CDS gene_syn GATL3, T6J4.1, T6J4_1, galacturonosyltransferase-like 3 gene GATL3 function Encodes a protein with putative galacturonosyltransferase activity. go_component endomembrane system|GO:0012505||IEA go_process carbohydrate biosynthetic process|GO:0016051||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS product galacturonosyltransferase-like 3 note galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). protein_id AT1G13250.1p transcript_id AT1G13250.1 protein_id AT1G13250.1p transcript_id AT1G13250.1
At1g13260	chr1:004542386	0.0	W/4542386-4543420	AT1G13260.1 CDS related to ABI3/VP1 1 [TAIR10] CDS gene_syn EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, T6J4.2, T6J4_2, related to ABI3/VP1 1 gene RAV1 function Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. go_component nucleus|GO:0005634|15610358|IDA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process circadian rhythm|GO:0007623|15728337|IEP go_process response to brassinosteroid stimulus|GO:0009741|15040885|IEP go_process negative regulation of flower development|GO:0009910|15040885|IMP go_process leaf development|GO:0048366|15040885|IMP go_process lateral root development|GO:0048527|15040885|IMP go_function DNA binding|GO:0003677|15548737|IDA go_function DNA binding|GO:0003677|9862967|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function transcription repressor activity|GO:0016564|19324928|IDA product related to ABI3/VP1 1 note related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). protein_id AT1G13260.1p transcript_id AT1G13260.1 protein_id AT1G13260.1p transcript_id AT1G13260.1
At1g13270	chr1:004544999	0.0	W/4544999-4545137,4545336-4545420,4545531-4545768,4545853-4546014,4546102-4546143,4546226-4546297,4546461-4546540,4546644-4546741,4546865-4546912,4547010-4547155	AT1G13270.1 CDS methionine aminopeptidase 1B [TAIR10] CDS gene_syn MAP1B, MAP1C, METHIONINE AMINOPEPTIDASE 1B, methionine aminopeptidase 1B gene MAP1C function Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C. go_component chloroplast|GO:0009507|18431481|IDA go_function aminopeptidase activity|GO:0004177||IEA go_function metalloexopeptidase activity|GO:0008235||IEA go_component mitochondrion|GO:0005739|15681659|TAS go_component chloroplast|GO:0009507|15681659|TAS go_process proteolysis|GO:0006508||ISS go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS go_function metalloexopeptidase activity|GO:0008235||ISS product methionine aminopeptidase 1B note methionine aminopeptidase 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1C (TAIR:AT3G25740.1); Has 18008 Blast hits to 17988 proteins in 2832 species: Archae - 481; Bacteria - 12145; Metazoa - 393; Fungi - 260; Plants - 253; Viruses - 0; Other Eukaryotes - 4476 (source: NCBI BLink). protein_id AT1G13270.1p transcript_id AT1G13270.1 protein_id AT1G13270.1p transcript_id AT1G13270.1
At1g13270	chr1:004544999	0.0	W/4544999-4545137,4545336-4545420,4545531-4545768,4545853-4546014,4546102-4546143,4546226-4546297,4546461-4546574	AT1G13270.2 CDS methionine aminopeptidase 1B [TAIR10] CDS gene_syn MAP1B, MAP1C, METHIONINE AMINOPEPTIDASE 1B, methionine aminopeptidase 1B gene MAP1C function Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C. go_component chloroplast|GO:0009507|18431481|IDA go_function aminopeptidase activity|GO:0004177||IEA go_function metalloexopeptidase activity|GO:0008235||IEA go_component mitochondrion|GO:0005739|15681659|TAS go_component chloroplast|GO:0009507|15681659|TAS go_process proteolysis|GO:0006508||ISS go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS go_function metalloexopeptidase activity|GO:0008235||ISS product methionine aminopeptidase 1B note methionine aminopeptidase 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1C (TAIR:AT3G25740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13270.2p transcript_id AT1G13270.2 protein_id AT1G13270.2p transcript_id AT1G13270.2
At1g13280	chr1:004547624	0.0	W/4547624-4547858,4548023-4548552	AT1G13280.1 CDS allene oxide cyclase 4 [TAIR10] CDS gene_syn AOC4, T6J4.4, T6J4_4, allene oxide cyclase 4 gene AOC4 function Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway. go_component chloroplast|GO:0009507|18431481|IDA go_component plasma membrane|GO:0005886|16618929|IDA go_process jasmonic acid biosynthetic process|GO:0009695|11891244|TAS go_process jasmonic acid biosynthetic process|GO:0009695||TAS go_function allene-oxide cyclase activity|GO:0046423|11891244|ISS product allene oxide cyclase 4 note allene oxide cyclase 4 (AOC4); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: allene oxide cyclase 3 (TAIR:AT3G25780.1); Has 204 Blast hits to 204 proteins in 33 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13280.1p transcript_id AT1G13280.1 protein_id AT1G13280.1p transcript_id AT1G13280.1
At1g13290	chr1:004550366	0.0	C/4550366-4550923,4551177-4551527	AT1G13290.1 CDS C2H2-like zinc finger protein [TAIR10] CDS gene_syn DEFECTIVELY ORGANIZED TRIBUTARIES 5, DOT5, T6J4.5, T6J4_5, WIP domain protein 6, WIP6 gene DOT5 function Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development. go_component nucleus|GO:0005634|20541552|IDA go_process phloem or xylem histogenesis|GO:0010087|18643975|IMP go_process leaf vascular tissue pattern formation|GO:0010305|18643975|IMP go_process cotyledon vascular tissue pattern formation|GO:0010588|18643975|IMP go_process root development|GO:0048364|18643975|IMP go_process shoot development|GO:0048367|18643975|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product C2H2-like zinc finger protein note DEFECTIVELY ORGANIZED TRIBUTARIES 5 (DOT5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G57670.1); Has 7460 Blast hits to 6100 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 6553; Fungi - 59; Plants - 690; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink). protein_id AT1G13290.1p transcript_id AT1G13290.1 protein_id AT1G13290.1p transcript_id AT1G13290.1
At1g13300	chr1:004556977	0.0	W/4556977-4557118,4557293-4557576,4557753-4557942,4558068-4558144,4558250-4558591	AT1G13300.1 CDS myb-like transcription factor family protein [TAIR10] CDS gene_syn HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, T6J4.6, T6J4_6 gene HRS1 function Overexpression confers hypersensitivity to low phosphate-elicited inhibition of primary root growth. go_process cellular response to phosphate starvation|GO:0016036|19341407|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process primary root development|GO:0080022|19341407|IMP go_function DNA binding|GO:0003677|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb-like transcription factor family protein note HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 (HRS1); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT3G25790.1); Has 1648 Blast hits to 1627 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1613; Viruses - 8; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G13300.1p transcript_id AT1G13300.1 protein_id AT1G13300.1p transcript_id AT1G13300.1
At1g13310	chr1:004561217	0.0	C/4561217-4561567,4561748-4561900,4561993-4562159,4562240-4562480,4562559-4562726,4562885-4562929	AT1G13310.1 CDS Endosomal targeting BRO1-like domain-containing protein [TAIR10] CDS gene_syn T6J4.7, T6J4_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Endosomal targeting BRO1-like domain-containing protein note Endosomal targeting BRO1-like domain-containing protein; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G13310.1p transcript_id AT1G13310.1 protein_id AT1G13310.1p transcript_id AT1G13310.1
AT1G13320	chr1:004563692	0.0	C/4563692-4563811,4563938-4564004,4564093-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566451	AT1G13320.4 AT1G13320.4 CDS protein phosphatase 2A subunit A3
At1g13320	chr1:004563692	0.0	C/4563692-4563811,4563938-4564004,4564093-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566583,4566956-4567348	AT1G13320.1 CDS protein phosphatase 2A subunit A3 [TAIR10] CDS gene_syn 65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A, PP2AA3, PR65, T6J4.8, T6J4_8, protein phosphatase 2A subunit A3 gene PP2AA3 function one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A) go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function binding|GO:0005488||IEA go_component protein phosphatase type 2A complex|GO:0000159|7811971|TAS go_process regulation of phosphorylation|GO:0042325|7811971|ISS go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS product protein phosphatase 2A subunit A3 note protein phosphatase 2A subunit A3 (PP2AA3); FUNCTIONS IN: binding, protein phosphatase type 2A regulator activity; INVOLVED IN: regulation of phosphorylation; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1); Has 2761 Blast hits to 1677 proteins in 248 species: Archae - 13; Bacteria - 63; Metazoa - 1436; Fungi - 398; Plants - 296; Viruses - 0; Other Eukaryotes - 555 (source: NCBI BLink). protein_id AT1G13320.1p transcript_id AT1G13320.1 protein_id AT1G13320.1p transcript_id AT1G13320.1
At1g13320	chr1:004563692	0.0	C/4563692-4563811,4563938-4564004,4564093-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566583,4566956-4567348	AT1G13320.3 CDS protein phosphatase 2A subunit A3 [TAIR10] CDS gene_syn 65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A, PP2AA3, PR65, T6J4.8, T6J4_8, protein phosphatase 2A subunit A3 gene PP2AA3 function one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A) go_function binding|GO:0005488||IEA go_component protein phosphatase type 2A complex|GO:0000159|7811971|TAS go_process regulation of phosphorylation|GO:0042325|7811971|ISS go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS product protein phosphatase 2A subunit A3 note protein phosphatase 2A subunit A3 (PP2AA3); FUNCTIONS IN: binding, protein phosphatase type 2A regulator activity; INVOLVED IN: regulation of phosphorylation; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1). protein_id AT1G13320.3p transcript_id AT1G13320.3 protein_id AT1G13320.3p transcript_id AT1G13320.3
At1g13320	chr1:004563970	0.0	C/4563970-4564002,4564089-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566583,4566956-4567348	AT1G13320.2 CDS protein phosphatase 2A subunit A3 [TAIR10] CDS gene_syn 65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A, PP2AA3, PR65, T6J4.8, T6J4_8, protein phosphatase 2A subunit A3 gene PP2AA3 function one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A) go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function binding|GO:0005488||IEA go_component protein phosphatase type 2A complex|GO:0000159|7811971|TAS go_process regulation of phosphorylation|GO:0042325|7811971|ISS go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS product protein phosphatase 2A subunit A3 note protein phosphatase 2A subunit A3 (PP2AA3); FUNCTIONS IN: binding, protein phosphatase type 2A regulator activity; INVOLVED IN: regulation of phosphorylation; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13320.2p transcript_id AT1G13320.2 protein_id AT1G13320.2p transcript_id AT1G13320.2
At1g13330	chr1:004568008	0.0	W/4568008-4568035,4568143-4568168,4568529-4568796,4568883-4568953,4569040-4569228,4569312-4569410	AT1G13330.1 CDS Arabidopsis Hop2 homolog [TAIR10] CDS gene_syn AHP2, Arabidopsis Hop2 homolog, T6J4.9, T6J4_9 gene AHP2 function Encodes the Arabidopsis Hop2 homologue. In other species, Hop2 is proposed to be involved in inter-homolog bias in double strand break repair. go_component cellular_component|GO:0005575||ND go_process chiasma assembly|GO:0051026|19763177|IMP go_function molecular_function|GO:0003674||ND product Arabidopsis Hop2 homolog note Arabidopsis Hop2 homolog (AHP2); CONTAINS InterPro DOMAIN/s: Tat binding protein 1-interacting (InterPro:IPR010776); Has 3022 Blast hits to 2708 proteins in 418 species: Archae - 82; Bacteria - 427; Metazoa - 1139; Fungi - 246; Plants - 98; Viruses - 21; Other Eukaryotes - 1009 (source: NCBI BLink). protein_id AT1G13330.1p transcript_id AT1G13330.1 protein_id AT1G13330.1p transcript_id AT1G13330.1
At1g13340	chr1:004569622	0.0	C/4569622-4570269,4570350-4570469,4570582-4571043	AT1G13340.1 CDS Regulator of Vps4 activity in the MVB pathway protein [TAIR10] CDS gene_syn T6J4.22, T6J4_22 go_process response to oxidative stress|GO:0006979|18614705|IMP product Regulator of Vps4 activity in the MVB pathway protein note Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G34220.2); Has 628 Blast hits to 628 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 130; Plants - 284; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). protein_id AT1G13340.1p transcript_id AT1G13340.1 protein_id AT1G13340.1p transcript_id AT1G13340.1
AT1G13350	chr1:004572502	0.0	C/4572502-4572932,4573032-4573146,4573225-4573516,4573631-4573787,4573960-4574044,4574242-4574448,4574535-4574773,4575145-4575305,4575408-4575835,4575915-4575995,4576239-4576547	AT1G13350.3 AT1G13350.3 CDS Protein kinase superfamily protein
At1g13350	chr1:004572502	0.0	C/4572502-4572932,4573032-4573146,4573225-4573516,4573631-4573787,4573960-4574044,4574380-4574448,4574535-4574773,4575145-4575305,4575408-4575835,4575915-4575995,4576239-4576547	AT1G13350.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn T6J4.10, T6J4_10 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component nucleus|GO:0005634|15469496|IDA go_component cytoplasm|GO:0005737|15469496|IDA go_function protein kinase activity|GO:0004672||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G53640.1). protein_id AT1G13350.2p transcript_id AT1G13350.2 protein_id AT1G13350.2p transcript_id AT1G13350.2
At1g13350	chr1:004572502	0.0	C/4572502-4572932,4573032-4573146,4573225-4573516,4573631-4573787,4573960-4574044,4574380-4574448,4574535-4574773,4575145-4575305,4575408-4575835,4576239-4576547	AT1G13350.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn T6J4.10, T6J4_10 go_component nucleus|GO:0005634|14617066|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component nucleus|GO:0005634|15469496|IDA go_component cytoplasm|GO:0005737|15469496|IDA go_function protein kinase activity|GO:0004672||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G53640.1); Has 102216 Blast hits to 93482 proteins in 2735 species: Archae - 128; Bacteria - 9335; Metazoa - 43180; Fungi - 13643; Plants - 14516; Viruses - 433; Other Eukaryotes - 20981 (source: NCBI BLink). protein_id AT1G13350.1p transcript_id AT1G13350.1 protein_id AT1G13350.1p transcript_id AT1G13350.1
At1g13360	chr1:004576895	0.0	C/4576895-4576964,4577305-4577813	AT1G13360.2 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). protein_id AT1G13360.2p transcript_id AT1G13360.2 protein_id AT1G13360.2p transcript_id AT1G13360.2
At1g13360	chr1:004577000	0.0	C/4577000-4577024,4577305-4577813	AT1G13360.3 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). protein_id AT1G13360.3p transcript_id AT1G13360.3 protein_id AT1G13360.3p transcript_id AT1G13360.3
At1g13360	chr1:004577229	0.0	C/4577229-4577813	AT1G13360.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13360.1p transcript_id AT1G13360.1 protein_id AT1G13360.1p transcript_id AT1G13360.1
At1g13370	chr1:004587926	0.0	C/4587926-4588096,4588202-4588292,4588374-4588522	AT1G13370.1 CDS Histone superfamily protein [TAIR10] CDS gene_syn T6J4.12, T6J4_12 go_component nucleosome|GO:0000786||IEA go_component chloroplast|GO:0009507||IEA go_process nucleosome assembly|GO:0006334||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS product Histone superfamily protein note Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: root, inflorescence, flower, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14571 Blast hits to 14563 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10588; Fungi - 2030; Plants - 1255; Viruses - 0; Other Eukaryotes - 698 (source: NCBI BLink). protein_id AT1G13370.1p transcript_id AT1G13370.1 protein_id AT1G13370.1p transcript_id AT1G13370.1
At1g13380	chr1:004589218	0.0	C/4589218-4589476,4589663-4589868,4590261-4590362	AT1G13380.1 CDS sodium/hydrogen exchanger (DUF1218) [TAIR10] CDS gene_syn T6J4.13, T6J4_13 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1218) note Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G27435.1); Has 523 Blast hits to 523 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 523; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13380.1p transcript_id AT1G13380.1 protein_id AT1G13380.1p transcript_id AT1G13380.1
At1g13390	chr1:004592829	0.0	C/4592829-4593140,4593245-4593308,4593395-4593549	AT1G13390.1 CDS translocase subunit seca, putative [TAIR10] CDS gene_syn T6J4.14, T6J4_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13390.1p transcript_id AT1G13390.1 protein_id AT1G13390.1p transcript_id AT1G13390.1
At1g13390	chr1:004592829	0.0	C/4592829-4593140,4593245-4593308,4593395-4593549	AT1G13390.2 CDS translocase subunit seca, putative [TAIR10] CDS gene_syn T6J4.14, T6J4_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13390.2p transcript_id AT1G13390.2 protein_id AT1G13390.2p transcript_id AT1G13390.2
At1g13400	chr1:004597784	0.0	W/4597784-4597785,4597890-4597996,4598235-4598348,4598426-4598513,4598599-4598911	AT1G13400.1 CDS C2H2 and C2HC zinc fingers superfamily protein [TAIR10] CDS gene_syn JAGGED-LIKE, JGL, NUB, NUBBIN, T6J4.23, T6J4_23 gene NUB function Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background. go_component intracellular|GO:0005622||IEA go_function zinc ion binding|GO:0008270||IEA go_process carpel development|GO:0048440|16554365|IGI go_process stamen development|GO:0048443|16554365|IGI go_process anther development|GO:0048653|16554365|IGI go_function nucleic acid binding|GO:0003676||ISS go_function zinc ion binding|GO:0008270||ISS product C2H2 and C2HC zinc fingers superfamily protein note NUBBIN (NUB); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: stamen development, anther development, carpel development; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G68480.1); Has 743 Blast hits to 743 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G13400.1p transcript_id AT1G13400.1 protein_id AT1G13400.1p transcript_id AT1G13400.1
At1g13410	chr1:004601526	0.0	W/4601526-4601649,4601874-4603174	AT1G13410.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T6J4.15, T6J4_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 37390 Blast hits to 13439 proteins in 200 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 54; Plants - 36888; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink). protein_id AT1G13410.1p transcript_id AT1G13410.1 protein_id AT1G13410.1p transcript_id AT1G13410.1
At1g13420	chr1:004604871	0.0	W/4604871-4605866	AT1G13420.1 CDS sulfotransferase 4B [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ATST4B, ST4B, T6J4.16, T6J4_16, sulfotransferase 4B gene ST4B function Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment. go_component cellular_component|GO:0005575||ND go_process response to cytokinin stimulus|GO:0009735|17039368|IEP go_function sulfotransferase activity|GO:0008146||ISS product sulfotransferase 4B note sulfotransferase 4B (ST4B); CONTAINS InterPro DOMAIN/s: Sulfotransferase domain (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase 4A (TAIR:AT2G14920.1); Has 2771 Blast hits to 2728 proteins in 191 species: Archae - 0; Bacteria - 215; Metazoa - 1679; Fungi - 1; Plants - 543; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink). protein_id AT1G13420.1p transcript_id AT1G13420.1 protein_id AT1G13420.1p transcript_id AT1G13420.1
At1g13430	chr1:004606530	0.0	W/4606530-4607585	AT1G13430.1 CDS sulfotransferase 4C [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 4C, ATST4C, ST4C, T6J4.24, T6J4_24, sulfotransferase 4C gene ST4C function Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4C is expressed in the roots and transcript levels rise in response to cytokinin treatment. go_component cellular_component|GO:0005575||ND go_process response to cytokinin stimulus|GO:0009735|17039368|IEP go_function sulfotransferase activity|GO:0008146||ISS product sulfotransferase 4C note sulfotransferase 4C (ST4C); CONTAINS InterPro DOMAIN/s: Sulfotransferase domain (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase 4A (TAIR:AT2G14920.1); Has 2670 Blast hits to 2627 proteins in 170 species: Archae - 0; Bacteria - 153; Metazoa - 1667; Fungi - 1; Plants - 539; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink). protein_id AT1G13430.1p transcript_id AT1G13430.1 protein_id AT1G13430.1p transcript_id AT1G13430.1
At1g13440	chr1:004608465	0.0	C/4608465-4608597,4608691-4608774,4608863-4609005,4609092-4609189,4609275-4609321,4609506-4609582,4609669-4609768,4609860-4609975,4610176-4610276,4610368-4610397,4610491-4610494	AT1G13440.2 CDS glyceraldehyde-3-phosphate dehydrogenase C2 [TAIR10] CDS gene_syn GAPC-2, GAPC2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, T6J4.17, T6J4_17, glyceraldehyde-3-phosphate dehydrogenase C2 gene GAPC2 go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process defense response to bacterium|GO:0042742|17028151|IEP go_process response to cadmium ion|GO:0046686|17075075|IEP go_component mitochondrion|GO:0005739|12492832|IDA go_component mitochondrion|GO:0005739|12953116|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component cytosol|GO:0005829|15533878|TAS go_process gluconeogenesis|GO:0006094|15533878|TAS go_process glycolysis|GO:0006096|15533878|TAS go_process glycolysis|GO:0006096||ISS go_process response to oxidative stress|GO:0006979|12492832|IDA go_function copper ion binding|GO:0005507|20018591|IDA go_function zinc ion binding|GO:0008270|20018591|IDA go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS product glyceraldehyde-3-phosphate dehydrogenase C2 note glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2); FUNCTIONS IN: copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: cytosol, mitochondrion, chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1); Has 25183 Blast hits to 25173 proteins in 6340 species: Archae - 41; Bacteria - 10793; Metazoa - 2402; Fungi - 2843; Plants - 3866; Viruses - 0; Other Eukaryotes - 5238 (source: NCBI BLink). protein_id AT1G13440.2p transcript_id AT1G13440.2 protein_id AT1G13440.2p transcript_id AT1G13440.2
At1g13440	chr1:004608465	0.0	C/4608465-4608597,4608691-4608774,4608863-4609005,4609092-4609189,4609275-4609335,4609436-4609582,4609669-4609768,4609860-4609975,4610176-4610276,4610368-4610397,4610491-4610494	AT1G13440.1 CDS glyceraldehyde-3-phosphate dehydrogenase C2 [TAIR10] CDS gene_syn GAPC-2, GAPC2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, T6J4.17, T6J4_17, glyceraldehyde-3-phosphate dehydrogenase C2 gene GAPC2 go_component cell wall|GO:0005618|16287169|IDA go_component nucleus|GO:0005634|14617066|IDA go_component nucleolus|GO:0005730|15496452|IDA go_component plasma membrane|GO:0005886|15060130|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process defense response to bacterium|GO:0042742|17028151|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_process response to cadmium ion|GO:0046686|17075075|IEP go_component mitochondrion|GO:0005739|12492832|IDA go_component mitochondrion|GO:0005739|12953116|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component cytosol|GO:0005829|15533878|TAS go_process gluconeogenesis|GO:0006094|15533878|TAS go_process glycolysis|GO:0006096|15533878|TAS go_process glycolysis|GO:0006096||ISS go_process response to oxidative stress|GO:0006979|12492832|IDA go_function copper ion binding|GO:0005507|20018591|IDA go_function zinc ion binding|GO:0008270|20018591|IDA go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS product glyceraldehyde-3-phosphate dehydrogenase C2 note glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2); FUNCTIONS IN: copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1); Has 25382 Blast hits to 25370 proteins in 6374 species: Archae - 87; Bacteria - 10988; Metazoa - 2357; Fungi - 2864; Plants - 3864; Viruses - 0; Other Eukaryotes - 5222 (source: NCBI BLink). protein_id AT1G13440.1p transcript_id AT1G13440.1 protein_id AT1G13440.1p transcript_id AT1G13440.1
At1g13448	chr1:004612243	0.0	W/4612243-4612571,4612667-4612929	AT1G13448.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G13450 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G13448.1
At1g13450	chr1:004612999	0.0	C/4612999-4613198,4613286-4613516,4613755-4613889,4614198-4614236,4614500-4615115	AT1G13450.1 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn T6J4.18, T6J4_18 go_component nucleus|GO:0005634|14617066|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1); Has 629 Blast hits to 540 proteins in 66 species: Archae - 0; Bacteria - 1; Metazoa - 110; Fungi - 7; Plants - 508; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G13450.1p transcript_id AT1G13450.1 protein_id AT1G13450.1p transcript_id AT1G13450.1
At1g13450	chr1:004613708	0.0	C/4613708-4613889,4614198-4614236,4614500-4615115	AT1G13450.2 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn T6J4.18, T6J4_18 go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13450.2p transcript_id AT1G13450.2 protein_id AT1G13450.2p transcript_id AT1G13450.2
At1g13450	chr1:004613708	0.0	C/4613708-4613889,4614198-4614236,4614500-4615115	AT1G13450.3 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn T6J4.18, T6J4_18 go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G13450.3p transcript_id AT1G13450.3 protein_id AT1G13450.3p transcript_id AT1G13450.3
AT1G13450	chr1:004614163	0.0	C/4614163-4614236,4614500-4615115	AT1G13450.4 AT1G13450.4 CDS Homeodomain-like superfamily protein
At1g13460	chr1:004616504	0.0	W/4616504-4617667,4617866-4618180	AT1G13460.1 CDS Protein phosphatase 2A regulatory B subunit family protein [TAIR10] CDS gene_syn T6J4.19, T6J4_19 function Encodes protein phosphatase 2A (PP2A) B'theta subunit. Targeted to peroxisomes. go_process signal transduction|GO:0007165||IEA go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA go_component protein phosphatase type 2A complex|GO:0000159||ISS go_component peroxisome|GO:0005777|19672620|IDA go_process signal transduction|GO:0007165||ISS go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS product Protein phosphatase 2A regulatory B subunit family protein note Protein phosphatase 2A regulatory B subunit family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: peroxisome, protein phosphatase type 2A complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT3G26020.2); Has 1181 Blast hits to 1162 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 160; Plants - 300; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). protein_id AT1G13460.1p transcript_id AT1G13460.1 protein_id AT1G13460.1p transcript_id AT1G13460.1
At1g13460	chr1:004616504	0.0	W/4616504-4617667,4617866-4618180	AT1G13460.2 CDS Protein phosphatase 2A regulatory B subunit family protein [TAIR10] CDS gene_syn T6J4.19, T6J4_19 function Encodes protein phosphatase 2A (PP2A) B'theta subunit. Targeted to peroxisomes. go_process signal transduction|GO:0007165||IEA go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA go_component protein phosphatase type 2A complex|GO:0000159||ISS go_component peroxisome|GO:0005777|19672620|IDA go_process signal transduction|GO:0007165||ISS go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS product Protein phosphatase 2A regulatory B subunit family protein note Protein phosphatase 2A regulatory B subunit family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: peroxisome, protein phosphatase type 2A complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT3G26020.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13460.2p transcript_id AT1G13460.2 protein_id AT1G13460.2p transcript_id AT1G13460.2
At1g13470	chr1:004620322	0.0	C/4620322-4621153,4621235-4621542	AT1G13470.1 CDS hypothetical protein (DUF1262) [TAIR10] CDS gene_syn T6J4.20, T6J4_20 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1262) note Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13520.1); Has 101 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13470.1p transcript_id AT1G13470.1 protein_id AT1G13470.1p transcript_id AT1G13470.1
At1g13480	chr1:004622783	0.0	C/4622783-4623626,4623724-4624043	AT1G13480.1 CDS hypothetical protein (DUF1262) [TAIR10] CDS gene_syn T6J4.21, T6J4_21 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1262) note Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13520.1); Has 111 Blast hits to 104 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13480.1p transcript_id AT1G13480.1 protein_id AT1G13480.1p transcript_id AT1G13480.1
At1g13485	chr1:004624171	0.0	C/4624171-4624344	AT1G13485.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G13485.1p transcript_id AT1G13485.1 protein_id AT1G13485.1p transcript_id AT1G13485.1
At1g13490	chr1:004624715	0.0	C/4624715-4625498,4625664-4625763,4625857-4626064	AT1G13490.1 CDS hypothetical protein (DUF1262) [TAIR10] CDS gene_syn F13B4.1, F13B4_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1262) note Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13500.1); Has 101 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13490.1p transcript_id AT1G13490.1 protein_id AT1G13490.1p transcript_id AT1G13490.1
AT1G13490	chr1:004624715	0.0	C/4624715-4625555,4625664-4625763,4625857-4626064	AT1G13490.2 AT1G13490.2 CDS hypothetical protein (DUF1262)
At1g13500	chr1:004627789	0.0	C/4627789-4628635,4628763-4628862,4628956-4629169	AT1G13500.1 CDS hypothetical protein (DUF1262) [TAIR10] CDS gene_syn F13B4.2, F13B4_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1262) note Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13530.1); Has 101 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13500.1p transcript_id AT1G13500.1 protein_id AT1G13500.1p transcript_id AT1G13500.1
At1g13510	chr1:004629459	0.0	C/4629459-4630281,4630368-4630687	AT1G13510.1 CDS hypothetical protein (DUF1262) [TAIR10] CDS gene_syn F13B4.15, F13B4_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1262) note Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13540.1); Has 101 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13510.1p transcript_id AT1G13510.1 protein_id AT1G13510.1p transcript_id AT1G13510.1
At1g13520	chr1:004631857	0.0	C/4631857-4632700,4632904-4633223	AT1G13520.1 CDS hypothetical protein (DUF1262) [TAIR10] CDS gene_syn F13B4.3, F13B4_3 go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1262) note Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13480.1); Has 107 Blast hits to 100 proteins in 12 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13520.1p transcript_id AT1G13520.1 protein_id AT1G13520.1p transcript_id AT1G13520.1
At1g13530	chr1:004633740	0.0	C/4633740-4634577,4634707-4634818,4634922-4635129	AT1G13530.1 CDS hypothetical protein (DUF1262) [TAIR10] CDS gene_syn F13B4.17, F13B4_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1262) note Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13500.1); Has 101 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13530.1p transcript_id AT1G13530.1 protein_id AT1G13530.1p transcript_id AT1G13530.1
At1g13540	chr1:004635474	0.0	C/4635474-4636296,4636386-4636708	AT1G13540.1 CDS hypothetical protein (DUF1262) [TAIR10] CDS gene_syn F13B4.29, F13B4_29 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1262) note Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13510.1); Has 101 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13540.1p transcript_id AT1G13540.1 protein_id AT1G13540.1p transcript_id AT1G13540.1
At1g13550	chr1:004637072	0.0	C/4637072-4637921,4637999-4638315	AT1G13550.1 CDS hypothetical protein (DUF1262) [TAIR10] CDS gene_syn F13B4.4, F13B4_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1262) note Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13480.1); Has 101 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13550.1p transcript_id AT1G13550.1 protein_id AT1G13550.1p transcript_id AT1G13550.1
AT1G13560	chr1:004638834	0.0	C/4638834-4638855,4638941-4639013,4639120-4639172,4639257-4639315,4639411-4639473,4639570-4639654,4639746-4639786,4639867-4639930,4640046-4640115,4640223-4640291,4640421-4640515,4640594-4640694,4640781-4640803,4640890-4640965,4641069-4641146,4641276-4641326,4641419-4641421	AT1G13560.3 AT1G13560.3 CDS aminoalcoholphosphotransferase 1
At1g13560	chr1:004638834	0.0	C/4638834-4638855,4638941-4639013,4639120-4639172,4639257-4639315,4639411-4639473,4639570-4639654,4639746-4639786,4639867-4639930,4640046-4640115,4640223-4640291,4640421-4640515,4640594-4640694,4640781-4640803,4640890-4640965,4641069-4641146,4641276-4641326,4641419-4641428,4641555-4641691	AT1G13560.1 CDS aminoalcoholphosphotransferase 1 [TAIR10] CDS gene_syn AAPT1, AMINOALCOHOLPHOSPHOTRANSFERASE, ATAAPT1, F13B4.5, F13B4_5, aminoalcoholphosphotransferase 1 gene AAPT1 function Encodes aminoalcoholphosphotransferase AAPT1. go_component membrane|GO:0016020||IEA go_process phospholipid biosynthetic process|GO:0008654||IEA go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA go_process phospholipid biosynthetic process|GO:0008654||ISS go_function phosphatidyltransferase activity|GO:0030572||ISS product aminoalcoholphosphotransferase 1 note aminoalcoholphosphotransferase 1 (AAPT1); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: aminoalcoholphosphotransferase (TAIR:AT3G25585.4); Has 927 Blast hits to 921 proteins in 239 species: Archae - 6; Bacteria - 34; Metazoa - 364; Fungi - 227; Plants - 82; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink). protein_id AT1G13560.1p transcript_id AT1G13560.1 protein_id AT1G13560.1p transcript_id AT1G13560.1
At1g13560	chr1:004638834	0.0	C/4638834-4638855,4638941-4639013,4639120-4639172,4639257-4639315,4639411-4639473,4639570-4639654,4639746-4639786,4639867-4639930,4640046-4640115,4640223-4640291,4640421-4640515,4640594-4640694,4640781-4640803,4640890-4640965,4641069-4641146,4641276-4641326,4641546-4641563	AT1G13560.2 CDS aminoalcoholphosphotransferase 1 [TAIR10] CDS gene_syn AAPT1, AMINOALCOHOLPHOSPHOTRANSFERASE, ATAAPT1, F13B4.5, F13B4_5, aminoalcoholphosphotransferase 1 gene AAPT1 function Encodes aminoalcoholphosphotransferase AAPT1. go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process phospholipid biosynthetic process|GO:0008654||IEA go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA go_process phospholipid biosynthetic process|GO:0008654||ISS go_function phosphatidyltransferase activity|GO:0030572||ISS product aminoalcoholphosphotransferase 1 note aminoalcoholphosphotransferase 1 (AAPT1); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: aminoalcoholphosphotransferase (TAIR:AT3G25585.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13560.2p transcript_id AT1G13560.2 protein_id AT1G13560.2p transcript_id AT1G13560.2
At1g13570	chr1:004642528	0.0	C/4642528-4642818,4642900-4643058,4643130-4643930	AT1G13570.1 CDS F-box/RNI-like superfamily protein [TAIR10] CDS gene_syn F13B4.6, F13B4_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like superfamily protein note F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13570.1p transcript_id AT1G13570.1 protein_id AT1G13570.1p transcript_id AT1G13570.1
AT1G13570	chr1:004642528	0.0	C/4642528-4642818,4642900-4643058,4643130-4643930	AT1G13570.3 AT1G13570.3 CDS F-box/RNI-like superfamily protein
AT1G13570	chr1:004643052	0.0	C/4643052-4643930	AT1G13570.2 AT1G13570.2 CDS F-box/RNI-like superfamily protein
At1g13580	chr1:004645006	0.0	C/4645006-4645037,4645123-4645307,4645390-4645575,4645681-4645836,4645926-4646155,4646628-4646765	AT1G13580.2 CDS LAG1 longevity assurance homolog 3 [TAIR10] CDS gene_syn F13B4.7, F13B4_7, LAG1 longevity assurance homolog 3, LAG13 gene LAG13 go_component endoplasmic reticulum|GO:0005783|18643979|IDA go_function molecular_function|GO:0003674||ND product LAG1 longevity assurance homolog 3 note LAG1 longevity assurance homolog 3 (LAG13); CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G25540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13580.2p transcript_id AT1G13580.2 protein_id AT1G13580.2p transcript_id AT1G13580.2
At1g13580	chr1:004645006	0.0	C/4645006-4645037,4645123-4645307,4645390-4645575,4645681-4645836,4645926-4646155,4646628-4646765	AT1G13580.3 CDS LAG1 longevity assurance homolog 3 [TAIR10] CDS gene_syn F13B4.7, F13B4_7, LAG1 longevity assurance homolog 3, LAG13 gene LAG13 go_component endoplasmic reticulum|GO:0005783|18643979|IDA go_function molecular_function|GO:0003674||ND product LAG1 longevity assurance homolog 3 note LAG1 longevity assurance homolog 3 (LAG13); CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G25540.1). protein_id AT1G13580.3p transcript_id AT1G13580.3 protein_id AT1G13580.3p transcript_id AT1G13580.3
At1g13580	chr1:004645380	0.0	C/4645380-4645575,4645681-4645836,4645926-4646155,4646628-4646765	AT1G13580.1 CDS LAG1 longevity assurance homolog 3 [TAIR10] CDS gene_syn F13B4.7, F13B4_7, LAG1 longevity assurance homolog 3, LAG13 gene LAG13 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component endoplasmic reticulum|GO:0005783|18643979|IDA go_function molecular_function|GO:0003674||ND product LAG1 longevity assurance homolog 3 note LAG1 longevity assurance homolog 3 (LAG13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G25540.1); Has 1229 Blast hits to 1229 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 587; Fungi - 304; Plants - 168; Viruses - 3; Other Eukaryotes - 167 (source: NCBI BLink). protein_id AT1G13580.1p transcript_id AT1G13580.1 protein_id AT1G13580.1p transcript_id AT1G13580.1
At1g13590	chr1:004647979	0.0	W/4647979-4648104,4648475-4648612	AT1G13590.1 CDS phytosulfokine 1 precursor [TAIR10] CDS gene_syn ATPSK1, F21F23.2, PSK1, phytosulfokine 1 precursor gene PSK1 function Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus. go_function growth factor activity|GO:0008083||IEA go_component extracellular matrix|GO:0031012|11706167|ISS go_process cell growth|GO:0016049|11706167|ISS product phytosulfokine 1 precursor note phytosulfokine 1 precursor (PSK1); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell growth; LOCATED IN: extracellular matrix; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); Has 98 Blast hits to 98 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13590.1p transcript_id AT1G13590.1 protein_id AT1G13590.1p transcript_id AT1G13590.1
At1g13600	chr1:004650787	0.0	C/4650787-4651377	AT1G13600.1 CDS basic leucine-zipper 58 [TAIR10] CDS gene_syn AtbZIP58, F21F23.3, bZIP58, basic leucine-zipper 58 gene bZIP58 go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function protein homodimerization activity|GO:0042803|16709202|IPI go_function protein heterodimerization activity|GO:0046982|16709202|IPI product basic leucine-zipper 58 note basic leucine-zipper 58 (bZIP58); FUNCTIONS IN: DNA binding, protein homodimerization activity, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic leucine-zipper 48 (TAIR:AT2G04038.1); Has 2046 Blast hits to 2038 proteins in 142 species: Archae - 0; Bacteria - 6; Metazoa - 51; Fungi - 55; Plants - 1834; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink). protein_id AT1G13600.1p transcript_id AT1G13600.1 protein_id AT1G13600.1p transcript_id AT1G13600.1
At1g13605	chr1:004658603	0.0	W/4658603-4658651,4658748-4659010	AT1G13605.1 CDS defensin-like protein [TAIR10] CDS function Encodes a defensin-like (DEFL) family protein. go_component endomembrane system|GO:0012505||IEA product unknown protein note LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13605.1p transcript_id AT1G13605.1 protein_id AT1G13605.1p transcript_id AT1G13605.1
At1g13607	chr1:004660778	0.0	W/4660778-4660838,4660941-4661098	AT1G13607.1 CDS Defensin-like (DEFL) family protein [TAIR10] CDS function Encodes a defensin-like (DEFL) family protein. go_component endomembrane system|GO:0012505||IEA product Defensin-like (DEFL) family protein note Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT1G13609.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13607.1p transcript_id AT1G13607.1 protein_id AT1G13607.1p transcript_id AT1G13607.1
At1g13608	chr1:004661682	0.0	W/4661682-4661726,4661838-4662029	AT1G13608.1 CDS Defensin-like (DEFL) family protein [TAIR10] CDS function Encodes a defensin-like (DEFL) family protein. product Defensin-like (DEFL) family protein note Defensin-like (DEFL) family protein; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT1G13609.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13608.1p transcript_id AT1G13608.1 protein_id AT1G13608.1p transcript_id AT1G13608.1
At1g13609	chr1:004662818	0.0	W/4662818-4662840,4662934-4663048	AT1G13609.2 CDS Defensin-like (DEFL) family protein [TAIR10] CDS function Encodes a defensin-like (DEFL) family protein. go_component endomembrane system|GO:0012505||IEA product Defensin-like (DEFL) family protein note Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system. protein_id AT1G13609.2p transcript_id AT1G13609.2 protein_id AT1G13609.2p transcript_id AT1G13609.2
At1g13609	chr1:004662818	0.0	W/4662818-4662878,4662971-4663146	AT1G13609.1 CDS Defensin-like (DEFL) family protein [TAIR10] CDS function Encodes a defensin-like (DEFL) family protein. go_component endomembrane system|GO:0012505||IEA product Defensin-like (DEFL) family protein note Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT1G13607.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13609.1p transcript_id AT1G13609.1 protein_id AT1G13609.1p transcript_id AT1G13609.1
At1g13610	chr1:004664008	0.0	C/4664008-4664080,4664203-4664573,4664673-4664720,4664822-4665053,4665276-4665312,4665665-4665680	AT1G13610.2 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F21F23.4 go_process proteolysis|GO:0006508||IEA go_function serine-type peptidase activity|GO:0008236||IEA product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G30380.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13610.2p transcript_id AT1G13610.2 protein_id AT1G13610.2p transcript_id AT1G13610.2
At1g13610	chr1:004664008	0.0	C/4664008-4664080,4664203-4664573,4664673-4664720,4664822-4665058,4665276-4665312,4665665-4665975	AT1G13610.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F21F23.4 product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G30380.2); Has 4490 Blast hits to 4478 proteins in 963 species: Archae - 8; Bacteria - 1669; Metazoa - 672; Fungi - 266; Plants - 333; Viruses - 11; Other Eukaryotes - 1531 (source: NCBI BLink). protein_id AT1G13610.1p transcript_id AT1G13610.1 protein_id AT1G13610.1p transcript_id AT1G13610.1
At1g13620	chr1:004668494	0.0	W/4668494-4668572,4668812-4668858,4669022-4669225	AT1G13620.1 CDS root meristem growth factor-like protein [TAIR10] CDS gene_syn F21F23.5, RGF2, root meristem growth factor 2 gene RGF2 function Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). go_component endomembrane system|GO:0012505||IEA go_process regulation of root meristem growth|GO:0010082|20798316|IGI go_process positive regulation of gene expression|GO:0010628|20798316|IEP go_function molecular_function|GO:0003674||ND product unknown protein note root meristem growth factor 2 (RGF2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of root meristem growth, positive regulation of gene expression; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04025.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13620.1p transcript_id AT1G13620.1 protein_id AT1G13620.1p transcript_id AT1G13620.1
AT1G13620	chr1:004668760	0.0	W/4668760-4668858,4669022-4669225	AT1G13620.2 AT1G13620.2 CDS root meristem growth factor-like protein
At1g13630	chr1:004669784	0.0	C/4669784-4669852,4670223-4670354,4670443-4672315,4672480-4672826	AT1G13630.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F21F23.6, F21F23_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1); Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3; Bacteria - 47; Metazoa - 773; Fungi - 914; Plants - 55536; Viruses - 0; Other Eukaryotes - 1597 (source: NCBI BLink). protein_id AT1G13630.1p transcript_id AT1G13630.1 protein_id AT1G13630.1p transcript_id AT1G13630.1
AT1G13630	chr1:004670308	0.0	C/4670308-4672278	AT1G13630.6 AT1G13630.6 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G13630	chr1:004670308	0.0	C/4670308-4672315,4672480-4672928	AT1G13630.5 AT1G13630.5 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G13630	chr1:004670308	0.0	C/4670308-4672358,4672484-4672928	AT1G13630.4 AT1G13630.4 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G13630	chr1:004670308	0.0	C/4670308-4672389	AT1G13630.3 AT1G13630.3 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g13630	chr1:004670311	0.0	C/4670311-4672339,4672480-4672928	AT1G13630.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F21F23.6, F21F23_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1). protein_id AT1G13630.2p transcript_id AT1G13630.2 protein_id AT1G13630.2p transcript_id AT1G13630.2
At1g13635	chr1:004674248	0.0	W/4674248-4674620,4674831-4674888,4675072-4675155,4675241-4675382,4675506-4675784	AT1G13635.1 CDS DNA glycosylase superfamily protein [TAIR10] CDS go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA go_component cellular_component|GO:0005575||ND go_function catalytic activity|GO:0003824||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G57970.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13635.1p transcript_id AT1G13635.1 protein_id AT1G13635.1p transcript_id AT1G13635.1
At1g13635	chr1:004674248	0.0	W/4674248-4674620,4674831-4674888,4675072-4675155,4675241-4675382,4675506-4675784	AT1G13635.2 CDS DNA glycosylase superfamily protein [TAIR10] CDS go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA go_component cellular_component|GO:0005575||ND go_function catalytic activity|GO:0003824||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G57970.2). protein_id AT1G13635.2p transcript_id AT1G13635.2 protein_id AT1G13635.2p transcript_id AT1G13635.2
At1g13640	chr1:004677276	0.0	C/4677276-4679144	AT1G13640.1 CDS Phosphatidylinositol 3- and 4-kinase family protein [TAIR10] CDS gene_syn F21F23.8, F21F23_8 go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA go_component cellular_component|GO:0005575||ND go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS product Phosphatidylinositol 3- and 4-kinase family protein note Phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 7 (TAIR:AT2G03890.1); Has 641 Blast hits to 624 proteins in 172 species: Archae - 0; Bacteria - 6; Metazoa - 171; Fungi - 87; Plants - 282; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). protein_id AT1G13640.1p transcript_id AT1G13640.1 protein_id AT1G13640.1p transcript_id AT1G13640.1
AT1G13640	chr1:004677276	0.0	C/4677276-4679144	AT1G13640.2 AT1G13640.2 CDS Phosphatidylinositol 3- and 4-kinase family protein
At1g13650	chr1:004680571	0.0	C/4680571-4680928,4681011-4681492,4681883-4681903	AT1G13650.1 CDS hypothetical protein [TAIR10] CDS gene_syn F21F23.9, F21F23_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4); Has 3688 Blast hits to 1629 proteins in 255 species: Archae - 22; Bacteria - 222; Metazoa - 684; Fungi - 292; Plants - 62; Viruses - 14; Other Eukaryotes - 2392 (source: NCBI BLink). protein_id AT1G13650.1p transcript_id AT1G13650.1 protein_id AT1G13650.1p transcript_id AT1G13650.1
At1g13650	chr1:004680571	0.0	C/4680571-4680928,4681011-4681492,4681883-4681903	AT1G13650.2 CDS hypothetical protein [TAIR10] CDS gene_syn F21F23.9, F21F23_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4); Has 3688 Blast hits to 1629 proteins in 255 species: Archae - 22; Bacteria - 222; Metazoa - 684; Fungi - 292; Plants - 62; Viruses - 14; Other Eukaryotes - 2392 (source: NCBI BLink). protein_id AT1G13650.2p transcript_id AT1G13650.2 protein_id AT1G13650.2p transcript_id AT1G13650.2
AT1G13650	chr1:004680571	0.0	C/4680571-4680928,4681011-4681498	AT1G13650.3 AT1G13650.3 CDS hypothetical protein
AT1G13650	chr1:004680571	0.0	C/4680571-4680928,4681011-4681498	AT1G13650.4 AT1G13650.4 CDS hypothetical protein
At1g13660	chr1:004683171	0.0	W/4683171-4685640	AT1G13660.1 [TAIR10] mRNA
At1g13660	chr1:004683171	0.0	W/4683171-4685640	AT1G13660 [TAIR10] TE pseudo gene_syn F21F23.10 note Transposable element gene, Mutator-like transposase family, has a 2.6e-36 P-value blast match to GB:AAA21566 mudrA of transposon="MuDR" (MuDr-element) (Zea mays)
At1g13670	chr1:004688201	0.0	W/4688201-4688878	AT1G13670.1 CDS hypothetical protein [TAIR10] CDS gene_syn F21F23.11, F21F23_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13670.1p transcript_id AT1G13670.1 protein_id AT1G13670.1p transcript_id AT1G13670.1
At1g13680	chr1:004690409	0.0	W/4690409-4690501,4690703-4690819,4691247-4691363,4691451-4691549,4691928-4692231,4692319-4692542,4692616-4692702	AT1G13680.1 CDS PLC-like phosphodiesterases superfamily protein [TAIR10] CDS gene_syn F21F23.12, F21F23_12 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_process intracellular signaling pathway|GO:0023034||IEA go_function phospholipase C activity|GO:0004629||IEA go_function phosphoric diester hydrolase activity|GO:0008081||IEA product PLC-like phosphodiesterases superfamily protein note PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G49740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G13680.1p transcript_id AT1G13680.1 protein_id AT1G13680.1p transcript_id AT1G13680.1
At1g13690	chr1:004693380	0.0	W/4693380-4693695,4693962-4694179	AT1G13690.1 CDS ATPase E1 [TAIR10] CDS gene_syn ATE1, ATPase E1, F21F23.13, F21F23_13, GRPE HOMOLOG gene ATE1 function AtE1 - stimulates the ATPase activity of DnaK/DnaJ go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product ATPase E1 note ATPase E1 (ATE1); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 14554 Blast hits to 12500 proteins in 724 species: Archae - 8; Bacteria - 1323; Metazoa - 7103; Fungi - 1824; Plants - 2936; Viruses - 0; Other Eukaryotes - 1360 (source: NCBI BLink). protein_id AT1G13690.1p transcript_id AT1G13690.1 protein_id AT1G13690.1p transcript_id AT1G13690.1
At1g13700	chr1:004694475	0.0	C/4694475-4694972,4695209-4695344,4695428-4695600	AT1G13700.1 CDS 6-phosphogluconolactonase 1 [TAIR10] CDS gene_syn 6-phosphogluconolactonase 1, F21F23.14, F21F23_14, PGL1 gene PGL1 go_process carbohydrate metabolic process|GO:0005975||IEA go_process pentose-phosphate shunt|GO:0006098||IEA go_function 6-phosphogluconolactonase activity|GO:0017057||IEA go_component cellular_component|GO:0005575||ND go_process carbohydrate metabolic process|GO:0005975||ISS go_function catalytic activity|GO:0003824||ISS product 6-phosphogluconolactonase 1 note 6-phosphogluconolactonase 1 (PGL1); FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 6-phosphogluconolactonase, DevB-type (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G24400.1); Has 3744 Blast hits to 3744 proteins in 1410 species: Archae - 0; Bacteria - 2521; Metazoa - 189; Fungi - 243; Plants - 155; Viruses - 0; Other Eukaryotes - 636 (source: NCBI BLink). protein_id AT1G13700.1p transcript_id AT1G13700.1 protein_id AT1G13700.1p transcript_id AT1G13700.1
AT1G13700	chr1:004694475	0.0	C/4694475-4694972,4695209-4695344,4695428-4695600	AT1G13700.2 AT1G13700.2 CDS 6-phosphogluconolactonase 1
AT1G13700	chr1:004694475	0.0	C/4694475-4694972,4695209-4695344,4695428-4695600	AT1G13700.3 AT1G13700.3 CDS 6-phosphogluconolactonase 1
At1g13710	chr1:004702932	0.0	C/4702932-4703546,4703654-4704592	AT1G13710.1 CDS cytochrome P450, family 78, subfamily A, polypeptide 5 [TAIR10] CDS gene_syn cytochrome P450, family 78, subfamily A, polypeptide 5, CYP78A5, F21F23.15, F21F23_15, KLU, KLUH gene CYP78A5 function Encodes the cytochrome P450 CYP78A5 monooxygenase. Contributes to the generation of a growth-stimulating signal distinct from the classical phytohormones that prevents proliferation arrest, promoting organ growth. go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_component endoplasmic reticulum|GO:0005783|18061566|IDA go_process positive regulation of cell proliferation|GO:0008284|18061566|IMP go_process regulation of meristem growth|GO:0010075|18492871|IGI go_process leaf formation|GO:0010338|18492871|IGI go_process organ growth|GO:0035265|18061566|IMP go_process regulation of growth rate|GO:0040009|18492871|IMP go_process positive regulation of organ growth|GO:0046622|18061566|IMP go_process floral organ development|GO:0048437|20188559|IMP go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 78, subfamily A, polypeptide 5 note cytochrome P450, family 78, subfamily A, polypeptide 5 (CYP78A5); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 78, subfamily A, polypeptide 10 (TAIR:AT1G74110.1); Has 31179 Blast hits to 31066 proteins in 1571 species: Archae - 49; Bacteria - 2905; Metazoa - 11364; Fungi - 6716; Plants - 9120; Viruses - 3; Other Eukaryotes - 1022 (source: NCBI BLink). protein_id AT1G13710.1p transcript_id AT1G13710.1 protein_id AT1G13710.1p transcript_id AT1G13710.1
At1g13720	chr1:004709635	0.0	W/4709635-4709706	AT1G13720.1 [TAIR10] tRNA gene_syn 61268.TRNA-THR-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Thr (anticodon: CGT) transcript_id AT1G13720.1
At1g13730	chr1:004710519	0.0	W/4710519-4710698,4710801-4711283,4711368-4711524,4711618-4711739,4711826-4711891,4711978-4712038,4712115-4712332	AT1G13730.1 CDS Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain [TAIR10] CDS gene_syn F21F23.16, F21F23_16 go_component intracellular|GO:0005622||IEA go_process transport|GO:0006810||IEA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process nucleocytoplasmic transport|GO:0006913||ISS go_function RNA binding|GO:0003723||ISS product Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain note Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT2G03640.2); Has 4164 Blast hits to 4034 proteins in 409 species: Archae - 0; Bacteria - 260; Metazoa - 2015; Fungi - 763; Plants - 820; Viruses - 2; Other Eukaryotes - 304 (source: NCBI BLink). protein_id AT1G13730.1p transcript_id AT1G13730.1 protein_id AT1G13730.1p transcript_id AT1G13730.1
AT1G13730	chr1:004710519	0.0	W/4710519-4710698,4710801-4711283,4711368-4711524,4711618-4711739,4711826-4711891,4711978-4712038,4712115-4712332	AT1G13730.2 AT1G13730.2 CDS Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
At1g13740	chr1:004713969	0.0	W/4713969-4714599,4714743-4715158	AT1G13740.1 CDS ABI five binding protein 2 [TAIR10] CDS gene_syn ABI five binding protein 2, AFP2, F21F23.17, F21F23_17 gene AFP2 function Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent. go_component nucleus|GO:0005634|18484180|IDA go_process response to stress|GO:0006950|18484180|IMP go_process response to abscisic acid stimulus|GO:0009737|18484180|IMP go_function protein binding|GO:0005515|20360743|IPI product ABI five binding protein 2 note ABI five binding protein 2 (AFP2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein (TAIR:AT1G69260.1); Has 207 Blast hits to 201 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 185; Viruses - 3; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G13740.1p transcript_id AT1G13740.1 protein_id AT1G13740.1p transcript_id AT1G13740.1
At1g13750	chr1:004715490	0.0	C/4715490-4715795,4715885-4716320,4716404-4716609,4716703-4716835,4716923-4717134,4717207-4717299,4717397-4717519,4717605-4717671,4717749-4717840,4717918-4718091	AT1G13750.1 CDS Purple acid phosphatases superfamily protein [TAIR10] CDS gene_syn F21F23.18, F21F23_18 go_component endomembrane system|GO:0012505||IEA go_function acid phosphatase activity|GO:0003993||IEA go_function hydrolase activity|GO:0016787||IEA go_function metal ion binding|GO:0046872||IEA go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Purple acid phosphatases superfamily protein note Purple acid phosphatases superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Fibronectin, type III (InterPro:IPR003961), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 27 (TAIR:AT5G50400.1); Has 1802 Blast hits to 1786 proteins in 349 species: Archae - 1; Bacteria - 481; Metazoa - 191; Fungi - 77; Plants - 759; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink). protein_id AT1G13750.1p transcript_id AT1G13750.1 protein_id AT1G13750.1p transcript_id AT1G13750.1
At1g13755	chr1:004718761	0.0	C/4718761-4719062,4719181-4719238	AT1G13755.1 CDS Defensin-like (DEFL) family protein [TAIR10] CDS function Encodes a defensin-like (DEFL) family protein. go_component endomembrane system|GO:0012505||IEA product Defensin-like (DEFL) family protein note Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13755.1p transcript_id AT1G13755.1 protein_id AT1G13755.1p transcript_id AT1G13755.1
At1g13760	chr1:004720365	0.0	C/4720365-4720423,4720963-4721101	AT1G13760.1 CDS hypothetical protein [TAIR10] CDS gene_syn F21F23.20, F21F23_20 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G13760.1p transcript_id AT1G13760.1 protein_id AT1G13760.1p transcript_id AT1G13760.1
At1g13770	chr1:004721717	0.0	W/4721717-4721838,4721948-4722005,4722086-4722145,4722222-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723864,4723966-4724153,4724247-4724345	AT1G13770.1 CDS root UVB sensitive protein (Protein of unknown function, DUF647) [TAIR10] CDS gene_syn F21F23.21, F21F23_21, ROOT UV-B SENSITIVE 3, RUS3 gene RUS3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF647 note ROOT UV-B SENSITIVE 3 (RUS3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT3G45890.1); Has 450 Blast hits to 446 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 75; Plants - 194; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT1G13770.1p transcript_id AT1G13770.1 protein_id AT1G13770.1p transcript_id AT1G13770.1
AT1G13770	chr1:004721717	0.0	W/4721717-4721838,4721948-4722005,4722086-4722145,4722222-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723989	AT1G13770.3 AT1G13770.3 CDS root UVB sensitive protein (Protein of unknown function, DUF647)
AT1G13770	chr1:004721717	0.0	W/4721717-4721838,4721948-4722005,4722086-4722145,4722222-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723628-4723701	AT1G13770.4 AT1G13770.4 CDS root UVB sensitive protein (Protein of unknown function, DUF647)
At1g13770	chr1:004722243	0.0	W/4722243-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723864,4723966-4724153,4724247-4724345	AT1G13770.2 CDS root UVB sensitive protein (Protein of unknown function, DUF647) [TAIR10] CDS gene_syn F21F23.21, F21F23_21, ROOT UV-B SENSITIVE 3, RUS3 gene RUS3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF647 note ROOT UV-B SENSITIVE 3 (RUS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT3G45890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G13770.2p transcript_id AT1G13770.2 protein_id AT1G13770.2p transcript_id AT1G13770.2
At1g13780	chr1:004724681	0.0	W/4724681-4724692,4724773-4725708,4725797-4725937,4726033-4726314	AT1G13780.1 CDS F-box/RNI-like/FBD-like domains-containing protein [TAIR10] CDS gene_syn F16A14.1, F16A14_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like/FBD-like domains-containing protein note F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/FBD-like domains containing protein (TAIR:AT5G27750.1); Has 2022 Blast hits to 1978 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2020; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G13780.1p transcript_id AT1G13780.1 protein_id AT1G13780.1p transcript_id AT1G13780.1
AT1G13780	chr1:004724681	0.0	W/4724681-4724692,4724773-4725765	AT1G13780.2 AT1G13780.2 CDS F-box/RNI-like/FBD-like domains-containing protein
At1g13790	chr1:004727438	0.0	W/4727438-4728656,4728748-4728929,4729015-4729083,4729186-4729479,4729692-4729901,4729993-4730229	AT1G13790.1 CDS XH/XS domain-containing protein [TAIR10] CDS gene_syn F16A14.2, F16A14_2 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product XH/XS domain-containing protein note XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G48670.2); Has 49019 Blast hits to 30980 proteins in 1872 species: Archae - 565; Bacteria - 6337; Metazoa - 23607; Fungi - 3326; Plants - 1659; Viruses - 198; Other Eukaryotes - 13327 (source: NCBI BLink). protein_id AT1G13790.1p transcript_id AT1G13790.1 protein_id AT1G13790.1p transcript_id AT1G13790.1
AT1G13790	chr1:004727438	0.0	W/4727438-4728656,4728748-4728929,4729015-4729083,4729186-4729479,4729692-4729901,4729993-4730229	AT1G13790.2 AT1G13790.2 CDS XH/XS domain-containing protein
AT1G13805	chr1:004730987	0.0	W/4730987-4731055	AT1G13805.1 AT1G13805.1 CDS hypothetical protein
At1g13800	chr1:004731056	0.0	C/4731056-4733707	AT1G13800.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F16A14.3, F16A14_3 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G26790.1); Has 64040 Blast hits to 14329 proteins in 287 species: Archae - 5; Bacteria - 54; Metazoa - 543; Fungi - 727; Plants - 60798; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink). protein_id AT1G13800.1p transcript_id AT1G13800.1 protein_id AT1G13800.1p transcript_id AT1G13800.1
AT1G13800	chr1:004731056	0.0	C/4731056-4733707	AT1G13800.2 AT1G13800.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g13810	chr1:004734088	0.0	W/4734088-4734119,4734285-4735164	AT1G13810.1 CDS Restriction endonuclease, type II-like superfamily protein [TAIR10] CDS gene_syn F16A14.30, F16A14_30 go_function DNA binding|GO:0003677||IEA go_function nuclease activity|GO:0004518||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Restriction endonuclease, type II-like superfamily protein note Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YqaJ viral recombinase family (InterPro:IPR019080), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT1G67660.1); Has 316 Blast hits to 315 proteins in 62 species: Archae - 0; Bacteria - 48; Metazoa - 55; Fungi - 0; Plants - 63; Viruses - 14; Other Eukaryotes - 136 (source: NCBI BLink). protein_id AT1G13810.1p transcript_id AT1G13810.1 protein_id AT1G13810.1p transcript_id AT1G13810.1
At1g13820	chr1:004735622	0.0	W/4735622-4735804,4736054-4736148,4736214-4736311,4736416-4736465,4736543-4736638,4736743-4736832,4736960-4737052,4737133-4737228,4737312-4737377,4737465-4737617	AT1G13820.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F16A14.4, F16A14_4 go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity|GO:0016787||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G39220.1); Has 7432 Blast hits to 7419 proteins in 1219 species: Archae - 99; Bacteria - 5035; Metazoa - 262; Fungi - 72; Plants - 574; Viruses - 0; Other Eukaryotes - 1390 (source: NCBI BLink). protein_id AT1G13820.1p transcript_id AT1G13820.1 protein_id AT1G13820.1p transcript_id AT1G13820.1
AT1G13825	chr1:004738747	0.0	C/4738747-4738752,4738837-4739040,4739156-4739305	AT1G13825.2 AT1G13825.2 CDS hypothetical protein
AT1G13825	chr1:004738747	0.0	C/4738747-4738752,4738837-4739046,4739156-4739305	AT1G13825.1 AT1G13825.1 CDS hypothetical protein
At1g13830	chr1:004739999	0.0	C/4739999-4740260,4740339-4740375,4740461-4740703,4740875-4740926	AT1G13830.1 CDS Carbohydrate-binding X8 domain superfamily protein [TAIR10] CDS gene_syn F16A14.5, F16A14_5 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Carbohydrate-binding X8 domain superfamily protein note Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G03505.1); Has 1996 Blast hits to 1758 proteins in 218 species: Archae - 6; Bacteria - 230; Metazoa - 175; Fungi - 81; Plants - 1344; Viruses - 45; Other Eukaryotes - 115 (source: NCBI BLink). protein_id AT1G13830.1p transcript_id AT1G13830.1 protein_id AT1G13830.1p transcript_id AT1G13830.1
AT1G13830	chr1:004739999	0.0	C/4739999-4740260,4740339-4740375,4740461-4740797	AT1G13830.2 AT1G13830.2 CDS Carbohydrate-binding X8 domain superfamily protein
At1g13840	chr1:004741999	0.0	W/4741999-4742071	AT1G13840.1 [TAIR10] tRNA gene_syn 60120.TRNA-ALA-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ala (anticodon: TGC) transcript_id AT1G13840.1
At1g13850	chr1:004743095	0.0	W/4743095-4743167	AT1G13850.1 [TAIR10] tRNA gene_syn 60120.TRNA-ALA-2 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ala (anticodon: TGC) transcript_id AT1G13850.1
At1g13860	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745707	AT1G13860.2 CDS QUASIMODO2 LIKE 1 [TAIR10] CDS gene_syn F16A14.7, F16A14_7, QUASIMODO2 LIKE 1, QUL1 gene QUL1 function Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development. go_component plasma membrane|GO:0005886|17151019|IDA go_process biological_process|GO:0008150||ND product QUASIMODO2 LIKE 1 note QUASIMODO2 LIKE 1 (QUL1); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13860.2p transcript_id AT1G13860.2 protein_id AT1G13860.2p transcript_id AT1G13860.2
At1g13860	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.1 CDS QUASIMODO2 LIKE 1 [TAIR10] CDS gene_syn F16A14.7, F16A14_7, QUASIMODO2 LIKE 1, QUL1 gene QUL1 function Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development. go_component plasma membrane|GO:0005886|17151019|IDA go_process biological_process|GO:0008150||ND product QUASIMODO2 LIKE 1 note QUASIMODO2 LIKE 1 (QUL1); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1); Has 1203 Blast hits to 1184 proteins in 159 species: Archae - 7; Bacteria - 235; Metazoa - 0; Fungi - 10; Plants - 903; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G13860.1p transcript_id AT1G13860.1 protein_id AT1G13860.1p transcript_id AT1G13860.1
At1g13860	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.3 CDS QUASIMODO2 LIKE 1 [TAIR10] CDS gene_syn F16A14.7, F16A14_7, QUASIMODO2 LIKE 1, QUL1 gene QUL1 function Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development. go_component plasma membrane|GO:0005886|17151019|IDA go_process biological_process|GO:0008150||ND product QUASIMODO2 LIKE 1 note QUASIMODO2 LIKE 1 (QUL1); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1); Has 1203 Blast hits to 1184 proteins in 159 species: Archae - 7; Bacteria - 235; Metazoa - 0; Fungi - 10; Plants - 903; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G13860.3p transcript_id AT1G13860.3 protein_id AT1G13860.3p transcript_id AT1G13860.3
At1g13860	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.4 CDS QUASIMODO2 LIKE 1 [TAIR10] CDS gene_syn F16A14.7, F16A14_7, QUASIMODO2 LIKE 1, QUL1 gene QUL1 function Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development. go_component plasma membrane|GO:0005886|17151019|IDA go_process biological_process|GO:0008150||ND product QUASIMODO2 LIKE 1 note QUASIMODO2 LIKE 1 (QUL1); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G13860.4p transcript_id AT1G13860.4 protein_id AT1G13860.4p transcript_id AT1G13860.4
AT1G13860	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.5 AT1G13860.5 CDS QUASIMODO2 LIKE 1
At1g13870	chr1:004747437	0.0	C/4747437-4748345	AT1G13870.1 CDS calmodulin binding;purine nucleotide binding [TAIR10] CDS gene_syn DEFORMED ROOTS AND LEAVES 1, DRL1, F16A14.8, F16A14_8 gene DRL1 function Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots. go_component cellular_component|GO:0005575||ND go_process meristem structural organization|GO:0009933|12615938|IMP go_process leaf development|GO:0048366|8392411|IMP go_function calmodulin binding|GO:0005516|12615938|IDA go_function purine nucleotide binding|GO:0017076|12615938|ISS product calmodulin binding;purine nucleotide binding note DEFORMED ROOTS AND LEAVES 1 (DRL1); CONTAINS InterPro DOMAIN/s: Chromatin associated protein KTI12 (InterPro:IPR013641); Has 345 Blast hits to 340 proteins in 174 species: Archae - 7; Bacteria - 2; Metazoa - 117; Fungi - 134; Plants - 50; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G13870.1p transcript_id AT1G13870.1 protein_id AT1G13870.1p transcript_id AT1G13870.1
AT1G13880	chr1:004749183	0.0	W/4749183-4749201,4749592-4749747,4749838-4750967	AT1G13880.2 AT1G13880.2 CDS ELM2 domain-containing protein
AT1G13880	chr1:004749603	0.0	W/4749603-4749747,4749835-4750967	AT1G13880.3 AT1G13880.3 CDS ELM2 domain-containing protein
At1g13880	chr1:004749603	0.0	W/4749603-4749747,4749838-4750967	AT1G13880.1 CDS ELM2 domain-containing protein [TAIR10] CDS gene_syn F16A14.9, F16A14_9 go_function DNA binding|GO:0003677||IEA go_process biological_process|GO:0008150||ND product ELM2 domain-containing protein note ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.2); Has 146 Blast hits to 146 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G13880.1p transcript_id AT1G13880.1 protein_id AT1G13880.1p transcript_id AT1G13880.1
At1g13890	chr1:004751581	0.0	W/4751581-4751955,4752059-4752152,4752356-4752480,4752564-4752661,4752745-4752844	AT1G13890.1 CDS soluble N-ethylmaleimide-sensitive factor adaptor protein 30 [TAIR10] CDS gene_syn ATSNAP30, F16A14.10, F16A14_10, SNAP30, soluble N-ethylmaleimide-sensitive factor adaptor protein 30 gene SNAP30 function Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33. go_component cellular_component|GO:0005575||ND go_process cellular membrane fusion|GO:0006944|11115874|TAS go_process vesicle-mediated transport|GO:0016192|11115874|TAS go_function SNAP receptor activity|GO:0005484|11115874|ISS product soluble N-ethylmaleimide-sensitive factor adaptor protein 30 note soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (SNAP30); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport, cellular membrane fusion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (TAIR:AT5G61210.1); Has 915 Blast hits to 914 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 570; Fungi - 86; Plants - 163; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G13890.1p transcript_id AT1G13890.1 protein_id AT1G13890.1p transcript_id AT1G13890.1
AT1G13890	chr1:004751581	0.0	W/4751581-4751955,4752059-4752152,4752356-4752480,4752564-4752661,4752745-4752844	AT1G13890.2 AT1G13890.2 CDS soluble N-ethylmaleimide-sensitive factor adaptor protein 30
At1g13900	chr1:004753494	0.0	C/4753494-4754768,4754859-4755554	AT1G13900.1 CDS Purple acid phosphatases superfamily protein [TAIR10] CDS gene_syn F16A14.11, F16A14_11 go_component chloroplast|GO:0009507|15028209|IDA go_function acid phosphatase activity|GO:0003993||IEA go_function hydrolase activity|GO:0016787||IEA go_function metal ion binding|GO:0046872||IEA go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Purple acid phosphatases superfamily protein note Purple acid phosphatases superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 9 (TAIR:AT2G03450.1); Has 1738 Blast hits to 1720 proteins in 355 species: Archae - 1; Bacteria - 507; Metazoa - 197; Fungi - 77; Plants - 727; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink). protein_id AT1G13900.1p transcript_id AT1G13900.1 protein_id AT1G13900.1p transcript_id AT1G13900.1
At1g13910	chr1:004755955	0.0	W/4755955-4756051,4756124-4756271,4756356-4756427,4756559-4756630,4756700-4756771,4756848-4756991,4757082-4757162,4757227-4757298,4757381-4757452,4757554-4757625,4757724-4757814	AT1G13910.1 CDS Leucine-rich repeat (LRR) family protein [TAIR10] CDS gene_syn F16A14.12, F16A14_12 go_component endomembrane system|GO:0012505||IEA go_process signal transduction|GO:0007165|11751054|IC product Leucine-rich repeat (LRR) family protein note Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G61240.1); Has 85487 Blast hits to 26338 proteins in 1000 species: Archae - 30; Bacteria - 6164; Metazoa - 15752; Fungi - 920; Plants - 57746; Viruses - 0; Other Eukaryotes - 4875 (source: NCBI BLink). protein_id AT1G13910.1p transcript_id AT1G13910.1 protein_id AT1G13910.1p transcript_id AT1G13910.1
AT1G13910	chr1:004755955	0.0	W/4755955-4756051,4756124-4756271,4756356-4756427,4756559-4756630,4756700-4756771,4756848-4756991,4757082-4757162,4757227-4757298,4757381-4757452,4757554-4757692	AT1G13910.2 AT1G13910.2 CDS Leucine-rich repeat (LRR) family protein
AT1G13920	chr1:004758089	0.0	W/4758089-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759302,4759374-4759455,4759560-4759754	AT1G13920.4 AT1G13920.4 CDS Remorin family protein
AT1G13920	chr1:004758089	0.0	W/4758089-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759306	AT1G13920.2 AT1G13920.2 CDS Remorin family protein
AT1G13920	chr1:004758089	0.0	W/4758089-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759306	AT1G13920.3 AT1G13920.3 CDS Remorin family protein
At1g13920	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759302,4759374-4759455,4759560-4759754	AT1G13920.1 CDS Remorin family protein [TAIR10] CDS gene_syn F16A14.13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function DNA binding|GO:0003677||ISS product Remorin family protein note Remorin family protein; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G69325.1); Has 2207 Blast hits to 2073 proteins in 300 species: Archae - 0; Bacteria - 220; Metazoa - 860; Fungi - 377; Plants - 358; Viruses - 3; Other Eukaryotes - 389 (source: NCBI BLink). protein_id AT1G13920.1p transcript_id AT1G13920.1 protein_id AT1G13920.1p transcript_id AT1G13920.1
AT1G13920	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759302,4759374-4759494	AT1G13920.7 AT1G13920.7 CDS Remorin family protein
AT1G13920	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759306	AT1G13920.5 AT1G13920.5 CDS Remorin family protein
AT1G13920	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759306	AT1G13920.6 AT1G13920.6 CDS Remorin family protein
At1g13930	chr1:004761091	0.0	W/4761091-4761558	AT1G13930.1 CDS oleosin-B3-like protein [TAIR10] CDS gene_syn F16A14.14 function Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. go_component plasma membrane|GO:0005886|15060130|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_process response to salt stress|GO:0009651|18643972|IMP go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: chloroplast, chloroplast stroma, plasma membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: nodulin-related protein 1 (TAIR:AT2G03440.1); Has 64 Blast hits to 64 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13930.1p transcript_id AT1G13930.1 protein_id AT1G13930.1p transcript_id AT1G13930.1
At1g13930	chr1:004761091	0.0	W/4761091-4761558	AT1G13930.2 CDS oleosin-B3-like protein [TAIR10] CDS gene_syn F16A14.14 function Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. go_process response to salt stress|GO:0009651|18643972|IMP go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nodulin-related protein 1 (TAIR:AT2G03440.1). protein_id AT1G13930.2p transcript_id AT1G13930.2 protein_id AT1G13930.2p transcript_id AT1G13930.2
At1g13930	chr1:004761091	0.0	W/4761091-4761558	AT1G13930.3 CDS oleosin-B3-like protein [TAIR10] CDS gene_syn F16A14.14 function Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. go_process response to salt stress|GO:0009651|18643972|IMP go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nodulin-related protein 1 (TAIR:AT2G03440.1). protein_id AT1G13930.3p transcript_id AT1G13930.3 protein_id AT1G13930.3p transcript_id AT1G13930.3
AT1G13935	chr1:004761844	0.0	C/4761844-4761878,4762282-4762426	AT1G13935.1 AT1G13935.1 CDS hypothetical protein
At1g13940	chr1:004762703	0.0	C/4762703-4764768,4764878-4765589,4765684-4765923	AT1G13940.1 CDS T-box transcription factor, putative (DUF863) [TAIR10] CDS gene_syn F16A14.15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF863) note Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 222 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 4; Metazoa - 12; Fungi - 2; Plants - 194; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G13940.1p transcript_id AT1G13940.1 protein_id AT1G13940.1p transcript_id AT1G13940.1
AT1G13940	chr1:004762703	0.0	C/4762703-4764768,4764878-4765589,4765684-4765923	AT1G13940.2 AT1G13940.2 CDS T-box transcription factor, putative (DUF863)
At1g13950	chr1:004773631	0.0	W/4773631-4773750,4774022-4774144,4774238-4774294,4774368-4774442,4774567-4774668	AT1G13950.1 CDS eukaryotic elongation factor 5A-1 [TAIR10] CDS gene_syn ATELF5A-1, EIF-5A, EIF5A, ELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A, EUKARYOTIC ELONGATION FACTOR 5A-1, F16A14.17, eukaryotic elongation factor 5A-1 gene ELF5A-1 function Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. go_function RNA binding|GO:0003723||IEA go_function translation elongation factor activity|GO:0003746||IEA go_function ribosome binding|GO:0043022||IEA go_component cellular_component|GO:0005575||ND go_process translational initiation|GO:0006413||ISS go_process xylem development|GO:0010089|18304977|IMP go_function translation initiation factor activity|GO:0003743||ISS product eukaryotic elongation factor 5A-1 note eukaryotic elongation factor 5A-1 (ELF5A-1); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, xylem development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1356 Blast hits to 1355 proteins in 415 species: Archae - 264; Bacteria - 0; Metazoa - 366; Fungi - 246; Plants - 261; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink). protein_id AT1G13950.1p transcript_id AT1G13950.1 protein_id AT1G13950.1p transcript_id AT1G13950.1
At1g13960	chr1:004776622	0.0	W/4776622-4777068,4777743-4778416,4778499-4778663,4778785-4779043	AT1G13960.1 CDS WRKY DNA-binding protein 4 [TAIR10] CDS gene_syn F16A14.18, WRKY DNA-binding protein 4, WRKY4 gene WRKY4 function Encodes WRKY DNA-binding protein 4 (WRKY4). go_component chloroplast|GO:0009507||IEA go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677|15705956|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10785665|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product WRKY DNA-binding protein 4 note WRKY DNA-binding protein 4 (WRKY4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1); Has 5876 Blast hits to 3214 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 17; Plants - 5749; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). protein_id AT1G13960.1p transcript_id AT1G13960.1 protein_id AT1G13960.1p transcript_id AT1G13960.1
At1g13960	chr1:004777755	0.0	W/4777755-4778416,4778499-4778663,4778785-4779043	AT1G13960.2 CDS WRKY DNA-binding protein 4 [TAIR10] CDS gene_syn F16A14.18, WRKY DNA-binding protein 4, WRKY4 gene WRKY4 function Encodes WRKY DNA-binding protein 4 (WRKY4). go_component chloroplast|GO:0009507||IEA go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677|15705956|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10785665|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product WRKY DNA-binding protein 4 note WRKY DNA-binding protein 4 (WRKY4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1); Has 5891 Blast hits to 3196 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 6; Plants - 5778; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). protein_id AT1G13960.2p transcript_id AT1G13960.2 protein_id AT1G13960.2p transcript_id AT1G13960.2
At1g13970	chr1:004779742	0.0	C/4779742-4779852,4779950-4780072,4780166-4780360,4780439-4780739,4780830-4780968,4781060-4781329,4781414-4781500,4781594-4781882	AT1G13970.1 CDS beta-hexosaminidase (DUF1336) [TAIR10] CDS gene_syn F16A14.19 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1336) note Protein of unknown function (DUF1336); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT3G29180.2); Has 292 Blast hits to 292 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 248; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). protein_id AT1G13970.1p transcript_id AT1G13970.1 protein_id AT1G13970.1p transcript_id AT1G13970.1
At1g13980	chr1:004789587	0.0	W/4789587-4790324,4790780-4794397	AT1G13980.1 CDS sec7 domain-containing protein [TAIR10] CDS gene_syn EMB30, EMBRYO DEFECTIVE 30, F16A14.20, GN, GNOM, VAN7, VASCULAR NETWORK 7 gene GN function Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions. go_component intracellular|GO:0005622||IEA go_process cytokinesis by cell plate formation|GO:0000911|8020095|IMP go_process establishment of planar polarity|GO:0001736|17084699|IGI go_process cellular cell wall organization|GO:0007047|11090208|IMP go_process cell adhesion|GO:0007155|11090208|IMP go_process embryo development ending in seed dormancy|GO:0009793|8020095|IMP go_process unidimensional cell growth|GO:0009826|8020095|IMP go_process embryonic pattern specification|GO:0009880|8020095|IMP go_process longitudinal axis specification|GO:0009942|8020095|IMP go_process phloem or xylem histogenesis|GO:0010087|10887076|IMP go_process lateral root primordium development|GO:0010386|18394892|IMP go_process basipetal auxin transport|GO:0010540|18394892|IMP go_process regulation of vesicle targeting, to, from or within Golgi|GO:0048209|16553903|TAS go_process root hair cell differentiation|GO:0048765|17084699|IGI go_function GTP:GDP antiporter activity|GO:0010292|10514379|IGI go_function protein homodimerization activity|GO:0042803|18203920|IPI product sec7 domain-containing protein note GNOM (GN); FUNCTIONS IN: protein homodimerization activity, GTP:GDP antiporter activity; INVOLVED IN: in 13 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: GNOM-like 1 (TAIR:AT5G39500.1); Has 2876 Blast hits to 2436 proteins in 245 species: Archae - 0; Bacteria - 32; Metazoa - 1502; Fungi - 690; Plants - 264; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink). protein_id AT1G13980.1p transcript_id AT1G13980.1 protein_id AT1G13980.1p transcript_id AT1G13980.1
At1g13980	chr1:004789587	0.0	W/4789587-4790324,4790780-4794397	AT1G13980.2 CDS sec7 domain-containing protein [TAIR10] CDS gene_syn EMB30, EMBRYO DEFECTIVE 30, F16A14.20, GN, GNOM, VAN7, VASCULAR NETWORK 7 gene GN function Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions. go_component intracellular|GO:0005622||IEA go_process cytokinesis by cell plate formation|GO:0000911|8020095|IMP go_process establishment of planar polarity|GO:0001736|17084699|IGI go_process cellular cell wall organization|GO:0007047|11090208|IMP go_process cell adhesion|GO:0007155|11090208|IMP go_process embryo development ending in seed dormancy|GO:0009793|8020095|IMP go_process unidimensional cell growth|GO:0009826|8020095|IMP go_process embryonic pattern specification|GO:0009880|8020095|IMP go_process longitudinal axis specification|GO:0009942|8020095|IMP go_process phloem or xylem histogenesis|GO:0010087|10887076|IMP go_process lateral root primordium development|GO:0010386|18394892|IMP go_process basipetal auxin transport|GO:0010540|18394892|IMP go_process regulation of vesicle targeting, to, from or within Golgi|GO:0048209|16553903|TAS go_process root hair cell differentiation|GO:0048765|17084699|IGI go_function GTP:GDP antiporter activity|GO:0010292|10514379|IGI go_function protein homodimerization activity|GO:0042803|18203920|IPI product sec7 domain-containing protein note GNOM (GN); FUNCTIONS IN: protein homodimerization activity, GTP:GDP antiporter activity; INVOLVED IN: in 13 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: GNOM-like 1 (TAIR:AT5G39500.1). protein_id AT1G13980.2p transcript_id AT1G13980.2 protein_id AT1G13980.2p transcript_id AT1G13980.2
At1g13990	chr1:004794810	0.0	W/4794810-4795191,4795282-4795319,4795494-4795539,4795779-4795878,4795960-4796077,4796155-4796250,4796339-4796476	AT1G13990.2 CDS plant/protein, putative [TAIR10] CDS gene_syn F7A19.8, F7A19_8 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13990.2p transcript_id AT1G13990.2 protein_id AT1G13990.2p transcript_id AT1G13990.2
At1g13990	chr1:004794810	0.0	W/4794810-4795191,4795282-4795319,4795494-4795565,4795779-4795816,4795915-4796077,4796155-4796250,4796339-4796476	AT1G13990.3 CDS plant/protein, putative [TAIR10] CDS gene_syn F7A19.8, F7A19_8 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13990.3p transcript_id AT1G13990.3 protein_id AT1G13990.3p transcript_id AT1G13990.3
At1g13990	chr1:004794810	0.0	W/4794810-4795191,4795779-4795878,4795960-4796077,4796155-4796250,4796339-4796476	AT1G13990.1 CDS plant/protein, putative [TAIR10] CDS gene_syn F7A19.8, F7A19_8 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G13990.1p transcript_id AT1G13990.1 protein_id AT1G13990.1p transcript_id AT1G13990.1
At1g14000	chr1:004797606	0.0	W/4797606-4797923,4798032-4798106,4798364-4798480,4798583-4798677,4798803-4798923,4799002-4799081,4799169-4799228,4799318-4799439,4799543-4799628,4799730-4799845,4799917-4800043	AT1G14000.1 CDS VH1-interacting kinase [TAIR10] CDS gene_syn F7A19.9, F7A19_9, VH1-interacting kinase, VIK gene VIK function Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling. go_component cellular_component|GO:0005575||ND go_process protein amino acid phosphorylation|GO:0006468||ISS go_process auxin mediated signaling pathway|GO:0009734|19000166|IMP go_process brassinosteroid mediated signaling pathway|GO:0009742|19000166|IMP go_process leaf vascular tissue pattern formation|GO:0010305|19000166|IMP go_function protein kinase activity|GO:0004672||ISS go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS go_function ATP binding|GO:0005524||ISS product VH1-interacting kinase note VH1-interacting kinase (VIK); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Integrin-linked protein kinase family (TAIR:AT3G58760.1); Has 139285 Blast hits to 133759 proteins in 5118 species: Archae - 180; Bacteria - 15286; Metazoa - 53967; Fungi - 12530; Plants - 33711; Viruses - 527; Other Eukaryotes - 23084 (source: NCBI BLink). protein_id AT1G14000.1p transcript_id AT1G14000.1 protein_id AT1G14000.1p transcript_id AT1G14000.1
At1g14010	chr1:004800385	0.0	C/4800385-4800529,4800626-4800702,4801289-4801498,4801584-4801790	AT1G14010.1 CDS emp24/gp25L/p24 family/GOLD family protein [TAIR10] CDS gene_syn F7A19.10, F7A19_10 go_process transport|GO:0006810||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_component membrane|GO:0016020||ISS go_process intracellular protein transport|GO:0006886||ISS go_function protein transmembrane transporter activity|GO:0008320||ISS product emp24/gp25L/p24 family/GOLD family protein note emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G26690.1); Has 1568 Blast hits to 1566 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 707; Fungi - 431; Plants - 276; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink). protein_id AT1G14010.1p transcript_id AT1G14010.1 protein_id AT1G14010.1p transcript_id AT1G14010.1
At1g14020	chr1:004802930	0.0	W/4802930-4803188,4803269-4803336,4803422-4803510,4803603-4803765,4803873-4804162,4804252-4804456,4804564-4804721,4804844-4805111	AT1G14020.1 CDS O-fucosyltransferase family protein [TAIR10] CDS gene_syn F7A19.11, F7A19_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product O-fucosyltransferase family protein note O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G03280.1); Has 821 Blast hits to 817 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 821; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14020.1p transcript_id AT1G14020.1 protein_id AT1G14020.1p transcript_id AT1G14020.1
At1g14030	chr1:004805493	0.0	C/4805493-4805708,4805789-4806193,4806282-4806404,4806520-4806731,4806858-4806886,4806977-4807440	AT1G14030.1 CDS Rubisco methyltransferase family protein [TAIR10] CDS gene_syn F7A19.12, F7A19_12 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_function [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity|GO:0030785||IEA go_function [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity|GO:0030785||ISS product Rubisco methyltransferase family protein note Rubisco methyltransferase family protein; FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192), SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 1278 Blast hits to 1271 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 348; Plants - 463; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink). protein_id AT1G14030.1p transcript_id AT1G14030.1 protein_id AT1G14030.1p transcript_id AT1G14030.1
At1g14040	chr1:004810488	0.0	W/4810488-4811109,4811845-4812214,4812300-4812348,4812433-4812504,4812599-4812728,4812813-4812933,4813032-4813290,4813378-4813482,4813572-4813766,4813848-4814129,4814204-4814340,4814444-4814543	AT1G14040.1 CDS EXS (ERD1/XPR1/SYG1) family protein [TAIR10] CDS gene_syn F7A19.13, F7A19_13 go_component integral to membrane|GO:0016021||IEA go_component integral to membrane|GO:0016021||ISS product EXS (ERD1/XPR1/SYG1) family protein note EXS (ERD1/XPR1/SYG1) family protein; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT2G03240.1); Has 1168 Blast hits to 1094 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 396; Plants - 362; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). protein_id AT1G14040.1p transcript_id AT1G14040.1 protein_id AT1G14040.1p transcript_id AT1G14040.1
At1g14048	chr1:004815683	0.0	C/4815683-4815988	AT1G14048.1 CDS GCK domain-containing protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product GCK domain-containing protein note GCK domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: GCK domain-containing protein (TAIR:AT5G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14048.1p transcript_id AT1G14048.1 protein_id AT1G14048.1p transcript_id AT1G14048.1
At1g14060	chr1:004817354	0.0	C/4817354-4817893	AT1G14060.1 CDS GCK domain-containing protein [TAIR10] CDS go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product GCK domain-containing protein note GCK domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: GCK domain-containing protein (TAIR:AT5G02210.1); Has 325 Blast hits to 285 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 95; Fungi - 33; Plants - 117; Viruses - 2; Other Eukaryotes - 76 (source: NCBI BLink). protein_id AT1G14060.1p transcript_id AT1G14060.1 protein_id AT1G14060.1p transcript_id AT1G14060.1
At1g14070	chr1:004818548	0.0	W/4818548-4818611,4818685-4820150	AT1G14070.1 [TAIR10] CDS gene_syn F7A19.15, F7A19_15, FUT7, fucosyltransferase 7 gene FUT7 function member of Xyloglucan fucosyltransferase family go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process cell wall biogenesis|GO:0042546||IEA go_function fucosyltransferase activity|GO:0008417|11743104|ISS go_function fucosyltransferase activity|GO:0008417||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product fucosyltransferase 7 note fucosyltransferase 7 (FUT7); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, cauline leaf, root; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: fucosyltransferase 6 (TAIR:AT1G14080.1); Has 333 Blast hits to 324 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 330; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G14070.1p transcript_id AT1G14070.1 protein_id AT1G14070.1p transcript_id AT1G14070.1
At1g14071	chr1:004820405	0.0	C/4820405-4820499	AT1G14071.1 [TAIR10] miRNA gene_syn MIR830A, microRNA830A gene MIR830A function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUUCUCCAAAUAGUUUAGGUU go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MIR830A (microRNA830A); miRNA transcript_id AT1G14071.1
At1g14080	chr1:004822526	0.0	W/4822526-4822688,4822768-4824218	AT1G14080.1 CDS fucosyltransferase 6 [TAIR10] CDS gene_syn ATFUT6, F7A19.16, F7A19_16, FUT6, fucosyltransferase 6 gene FUT6 function member of Xyloglucan fucosyltransferase family go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process cell wall biogenesis|GO:0042546||IEA go_function fucosyltransferase activity|GO:0008417|11743104|ISS go_function fucosyltransferase activity|GO:0008417||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product fucosyltransferase 6 note fucosyltransferase 6 (FUT6); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, root, flower; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: fucosyltransferase 4 (TAIR:AT2G15390.2); Has 336 Blast hits to 327 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 332; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G14080.1p transcript_id AT1G14080.1 protein_id AT1G14080.1p transcript_id AT1G14080.1
At1g14090	chr1:004826292	0.0	C/4826292-4827122	AT1G14090.1 CDS PPR containing-like protein [TAIR10] pseudogene
At1g14100	chr1:004827961	0.0	W/4827961-4828066,4828143-4829587	AT1G14100.1 CDS fucosyltransferase 8 [TAIR10] CDS gene_syn FUT8, fucosyltransferase 8 gene FUT8 function member of Glycosyltransferase Family- 37. FUT8 was previously associated to AT1G14110 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process cell wall biogenesis|GO:0042546||IEA go_function galactoside 2-alpha-L-fucosyltransferase activity|GO:0008107||IEA product fucosyltransferase 8 note fucosyltransferase 8 (FUT8); FUNCTIONS IN: galactoside 2-alpha-L-fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: fucosyltransferase 7 (TAIR:AT1G14070.1); Has 332 Blast hits to 323 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 330; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G14100.1p transcript_id AT1G14100.1 protein_id AT1G14100.1p transcript_id AT1G14100.1
At1g14110	chr1:004830297	0.0	W/4830297-4830405,4830483-4831378,4831496-4831915	AT1G14110.1 CDS fucosyltransferase 9 [TAIR10] CDS gene_syn ATFUT9, F7A19.19, F7A19_19, FUT9, fucosyltransferase 9 gene FUT9 function member of xyloglucan fucosyltransferase family go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process cell wall biogenesis|GO:0042546||IEA go_function fucosyltransferase activity|GO:0008417|11743104|ISS product fucosyltransferase 9 note fucosyltransferase 9 (FUT9); FUNCTIONS IN: fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, cauline leaf; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: fucosyltransferase 8 (TAIR:AT1G14100.1); Has 330 Blast hits to 321 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 328; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G14110.1p transcript_id AT1G14110.1 protein_id AT1G14110.1p transcript_id AT1G14110.1
At1g14120	chr1:004833648	0.0	C/4833648-4833920,4834019-4834340,4834490-4834833	AT1G14120.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F7A19.20, F7A19_20 go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G14130.1); Has 6316 Blast hits to 6255 proteins in 769 species: Archae - 0; Bacteria - 698; Metazoa - 67; Fungi - 416; Plants - 4549; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink). protein_id AT1G14120.1p transcript_id AT1G14120.1 protein_id AT1G14120.1p transcript_id AT1G14120.1
AT1G14120	chr1:004833648	0.0	C/4833648-4833920,4834019-4834340,4834490-4834833	AT1G14120.2 AT1G14120.2 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
AT1G14120	chr1:004833648	0.0	C/4833648-4833920,4834019-4834340,4834490-4834833	AT1G14120.3 AT1G14120.3 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
At1g14130	chr1:004836041	0.0	C/4836041-4836620,4836694-4837040	AT1G14130.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F7A19.21, F7A19_21 go_component nucleus|GO:0005634|14617066|IDA go_function oxidoreductase activity|GO:0016491||IEA go_process biological_process|GO:0008150||ND go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G14120.1); Has 6919 Blast hits to 6851 proteins in 822 species: Archae - 0; Bacteria - 798; Metazoa - 89; Fungi - 567; Plants - 4661; Viruses - 0; Other Eukaryotes - 804 (source: NCBI BLink). protein_id AT1G14130.1p transcript_id AT1G14130.1 protein_id AT1G14130.1p transcript_id AT1G14130.1
At1g14140	chr1:004838131	0.0	C/4838131-4838661,4839216-4839602	AT1G14140.1 CDS Mitochondrial substrate carrier family protein [TAIR10] CDS gene_syn F7A19.22, F7A19_22 go_component mitochondrial inner membrane|GO:0005743||IEA go_component membrane|GO:0016020||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function transporter activity|GO:0005215||IEA go_function binding|GO:0005488||IEA go_component mitochondrial inner membrane|GO:0005743||ISS go_process transport|GO:0006810||ISS go_process mitochondrial transport|GO:0006839||ISS go_function binding|GO:0005488||ISS product Mitochondrial substrate carrier family protein note Mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: uncoupling protein 2 (TAIR:AT5G58970.1); Has 28913 Blast hits to 14062 proteins in 461 species: Archae - 0; Bacteria - 4; Metazoa - 12057; Fungi - 8822; Plants - 5230; Viruses - 3; Other Eukaryotes - 2797 (source: NCBI BLink). protein_id AT1G14140.1p transcript_id AT1G14140.1 protein_id AT1G14140.1p transcript_id AT1G14140.1
At1g14150	chr1:004839885	0.0	W/4839885-4840358,4840534-4840632	AT1G14150.1 CDS PsbQ-like 2 [TAIR10] CDS gene_syn F7A19.23, F7A19_23, PQL1, PQL2, PsbQ-like 1, PsbQ-like 2 gene PQL2 function Encodes a subunit of the NAD(P)H dehydrogenase complex located in the chloroplast thylakoid lumen. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component nitrite reductase complex [NAD(P)H]|GO:0009344|20460499|IMP go_component chloroplast thylakoid|GO:0009534|20430763|IDA go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS go_component chloroplast photosystem II|GO:0030095||ISS go_process photosynthetic electron transport chain|GO:0009767|20430763|IMP go_function electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity|GO:0045156|20430763|IMP product PsbQ-like 2 note PsbQ-like 2 (PQL2); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit Q-2 (TAIR:AT4G05180.1); Has 142 Blast hits to 142 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14150.1p transcript_id AT1G14150.1 protein_id AT1G14150.1p transcript_id AT1G14150.1
At1g14150	chr1:004839885	0.0	W/4839885-4840373	AT1G14150.2 CDS PsbQ-like 2 [TAIR10] CDS gene_syn F7A19.23, F7A19_23, PQL1, PQL2, PsbQ-like 1, PsbQ-like 2 gene PQL2 function Encodes a subunit of the NAD(P)H dehydrogenase complex located in the chloroplast thylakoid lumen. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component nitrite reductase complex [NAD(P)H]|GO:0009344|20460499|IMP go_component chloroplast thylakoid|GO:0009534|20430763|IDA go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS go_component chloroplast photosystem II|GO:0030095||ISS go_process photosynthetic electron transport chain|GO:0009767|20430763|IMP go_function electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity|GO:0045156|20430763|IMP product PsbQ-like 2 note PsbQ-like 2 (PQL2); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: PsbQ-like 1 (TAIR:AT3G01440.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14150.2p transcript_id AT1G14150.2 protein_id AT1G14150.2p transcript_id AT1G14150.2
At1g14160	chr1:004840798	0.0	C/4840798-4841013,4841168-4841291,4841371-4841660	AT1G14160.1 CDS Uncharacterised protein family (UPF0497) [TAIR10] CDS gene_syn F7A19.24, F7A19_24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Uncharacterised protein family (UPF0497) note Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT5G15290.1); Has 565 Blast hits to 565 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 565; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14160.1p transcript_id AT1G14160.1 protein_id AT1G14160.1p transcript_id AT1G14160.1
At1g14170	chr1:004843463	0.0	C/4843463-4843498,4843597-4843779,4843875-4844129,4844207-4844572,4844654-4845126,4845226-4845253	AT1G14170.2 CDS RNA-binding KH domain-containing protein [TAIR10] CDS gene_syn F7A19.25, F7A19_25 go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product RNA-binding KH domain-containing protein note RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14170.2p transcript_id AT1G14170.2 protein_id AT1G14170.2p transcript_id AT1G14170.2
At1g14170	chr1:004843463	0.0	C/4843463-4843498,4843597-4843779,4843875-4844129,4844207-4844572,4844654-4845150,4845226-4845253	AT1G14170.1 CDS RNA-binding KH domain-containing protein [TAIR10] CDS gene_syn F7A19.25, F7A19_25 go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product RNA-binding KH domain-containing protein note RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 5723 Blast hits to 2502 proteins in 207 species: Archae - 0; Bacteria - 27; Metazoa - 3969; Fungi - 490; Plants - 1023; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink). protein_id AT1G14170.1p transcript_id AT1G14170.1 protein_id AT1G14170.1p transcript_id AT1G14170.1
At1g14170	chr1:004843463	0.0	C/4843463-4843498,4843597-4843779,4843875-4844129,4844207-4844572,4844654-4845253	AT1G14170.3 CDS RNA-binding KH domain-containing protein [TAIR10] CDS gene_syn F7A19.25, F7A19_25 go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product RNA-binding KH domain-containing protein note RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14170.3p transcript_id AT1G14170.3 protein_id AT1G14170.3p transcript_id AT1G14170.3
At1g14180	chr1:004847828	0.0	W/4847828-4848092,4848189-4848970	AT1G14180.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F7A19.26 go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G18260.1); Has 165 Blast hits to 164 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 162; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G14180.1p transcript_id AT1G14180.1 protein_id AT1G14180.1p transcript_id AT1G14180.1
At1g14180	chr1:004847976	0.0	W/4847976-4848092,4848194-4848970	AT1G14180.2 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F7A19.26 go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G18260.1); Has 163 Blast hits to 162 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 160; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G14180.2p transcript_id AT1G14180.2 protein_id AT1G14180.2p transcript_id AT1G14180.2
At1g14182	chr1:004849448	0.0	C/4849448-4849667,4849760-4849826	AT1G14182.1 [TAIR10] pseudogene
At1g14185	chr1:004850284	0.0	W/4850284-4850338,4850429-4851885	AT1G14185.1 CDS Glucose-methanol-choline (GMC) oxidoreductase family protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process alcohol metabolic process|GO:0006066||IEA go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA go_function FAD binding|GO:0050660||IEA go_function aldehyde-lyase activity|GO:0016832||ISS product Glucose-methanol-choline (GMC) oxidoreductase family protein note Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: alcohol metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14190.1); Has 12030 Blast hits to 11184 proteins in 1126 species: Archae - 6; Bacteria - 4157; Metazoa - 958; Fungi - 1842; Plants - 310; Viruses - 9; Other Eukaryotes - 4748 (source: NCBI BLink). protein_id AT1G14185.1p transcript_id AT1G14185.1 protein_id AT1G14185.1p transcript_id AT1G14185.1
AT1G14190	chr1:004852650	0.0	W/4852650-4852704,4852794-4854307	AT1G14190.2 AT1G14190.2 CDS Glucose-methanol-choline (GMC) oxidoreductase family protein
At1g14190	chr1:004852802	0.0	W/4852802-4854307	AT1G14190.1 CDS Glucose-methanol-choline (GMC) oxidoreductase family protein [TAIR10] CDS gene_syn F7A19.28, F7A19_28 go_process alcohol metabolic process|GO:0006066||IEA go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA go_function FAD binding|GO:0050660||IEA go_component cellular_component|GO:0005575||ND go_function aldehyde-lyase activity|GO:0016832||ISS product Glucose-methanol-choline (GMC) oxidoreductase family protein note Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: alcohol metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14185.1); Has 12034 Blast hits to 11141 proteins in 1120 species: Archae - 6; Bacteria - 4075; Metazoa - 1036; Fungi - 1877; Plants - 336; Viruses - 6; Other Eukaryotes - 4698 (source: NCBI BLink). protein_id AT1G14190.1p transcript_id AT1G14190.1 protein_id AT1G14190.1p transcript_id AT1G14190.1
At1g14200	chr1:004854532	0.0	C/4854532-4855071	AT1G14200.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F7A19.29, F7A19_29 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G26800.1); Has 10250 Blast hits to 10222 proteins in 289 species: Archae - 0; Bacteria - 6; Metazoa - 2721; Fungi - 824; Plants - 5163; Viruses - 73; Other Eukaryotes - 1463 (source: NCBI BLink). protein_id AT1G14200.1p transcript_id AT1G14200.1 protein_id AT1G14200.1p transcript_id AT1G14200.1
At1g14205	chr1:004855570	0.0	W/4855570-4855681,4855777-4855868,4855965-4856117,4856610-4856762	AT1G14205.1 CDS Ribosomal L18p/L5e family protein [TAIR10] CDS go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal L18p/L5e family protein note Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G48350.1); Has 2486 Blast hits to 2465 proteins in 979 species: Archae - 0; Bacteria - 1979; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink). protein_id AT1G14205.1p transcript_id AT1G14205.1 protein_id AT1G14205.1p transcript_id AT1G14205.1
At1g14210	chr1:004856902	0.0	C/4856902-4857182,4857261-4857465,4857600-4857755,4857840-4857941	AT1G14210.1 CDS Ribonuclease T2 family protein [TAIR10] CDS gene_syn F7A19.31, F7A19_31 go_component endomembrane system|GO:0012505||IEA go_process response to salt stress|GO:0009651|17916636|IEP go_function RNA binding|GO:0003723||IEA go_function ribonuclease T2 activity|GO:0033897||IEA go_function endoribonuclease activity|GO:0004521||ISS product Ribonuclease T2 family protein note Ribonuclease T2 family protein; FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2321 Blast hits to 2320 proteins in 411 species: Archae - 0; Bacteria - 245; Metazoa - 291; Fungi - 229; Plants - 1455; Viruses - 6; Other Eukaryotes - 95 (source: NCBI BLink). protein_id AT1G14210.1p transcript_id AT1G14210.1 protein_id AT1G14210.1p transcript_id AT1G14210.1
At1g14220	chr1:004858642	0.0	C/4858642-4858865,4858955-4859153,4859233-4859388,4859494-4859601	AT1G14220.1 CDS Ribonuclease T2 family protein [TAIR10] CDS gene_syn F7A19.32, F7A19_32 go_component endomembrane system|GO:0012505||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function RNA binding|GO:0003723||IEA go_function ribonuclease T2 activity|GO:0033897||IEA go_function endoribonuclease activity|GO:0004521||ISS product Ribonuclease T2 family protein note Ribonuclease T2 family protein; FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root, egg cell; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: ribonuclease 3 (TAIR:AT1G26820.1); Has 2564 Blast hits to 2563 proteins in 502 species: Archae - 0; Bacteria - 420; Metazoa - 283; Fungi - 235; Plants - 1517; Viruses - 7; Other Eukaryotes - 102 (source: NCBI BLink). protein_id AT1G14220.1p transcript_id AT1G14220.1 protein_id AT1G14220.1p transcript_id AT1G14220.1
At1g14225	chr1:004860515	0.0	C/4860515-4860649	AT1G14225.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14225.1p transcript_id AT1G14225.1 protein_id AT1G14225.1p transcript_id AT1G14225.1
At1g14230	chr1:004861497	0.0	W/4861497-4862103,4862343-4862455,4862588-4862695,4862924-4862966,4863070-4863261,4863347-4863444,4863545-4863741,4863838-4863991	AT1G14230.1 CDS GDA1/CD39 nucleoside phosphatase family protein [TAIR10] CDS gene_syn 7A19.33, 7A19_33, F7A19.33, F7A19_33 go_function hydrolase activity|GO:0016787||IEA go_function hydrolase activity|GO:0016787||ISS product GDA1/CD39 nucleoside phosphatase family protein note GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1); Has 1467 Blast hits to 1458 proteins in 234 species: Archae - 0; Bacteria - 41; Metazoa - 609; Fungi - 317; Plants - 334; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink). protein_id AT1G14230.1p transcript_id AT1G14230.1 protein_id AT1G14230.1p transcript_id AT1G14230.1
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.1 CDS GDA1/CD39 nucleoside phosphatase family protein [TAIR10] CDS gene_syn F7A19.34, F7A19_34 go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS product GDA1/CD39 nucleoside phosphatase family protein note GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1); Has 1471 Blast hits to 1463 proteins in 237 species: Archae - 0; Bacteria - 39; Metazoa - 609; Fungi - 317; Plants - 332; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink). protein_id AT1G14240.1p transcript_id AT1G14240.1 protein_id AT1G14240.1p transcript_id AT1G14240.1
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.2 CDS GDA1/CD39 nucleoside phosphatase family protein [TAIR10] CDS gene_syn F7A19.34, F7A19_34 go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS product GDA1/CD39 nucleoside phosphatase family protein note GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1); Has 1471 Blast hits to 1463 proteins in 237 species: Archae - 0; Bacteria - 39; Metazoa - 609; Fungi - 317; Plants - 332; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink). protein_id AT1G14240.2p transcript_id AT1G14240.2 protein_id AT1G14240.2p transcript_id AT1G14240.2
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.4 CDS GDA1/CD39 nucleoside phosphatase family protein [TAIR10] CDS gene_syn F7A19.34, F7A19_34 go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS product GDA1/CD39 nucleoside phosphatase family protein note GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14240.4p transcript_id AT1G14240.4 protein_id AT1G14240.4p transcript_id AT1G14240.4
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865822-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.3 CDS GDA1/CD39 nucleoside phosphatase family protein [TAIR10] CDS gene_syn F7A19.34, F7A19_34 go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS product GDA1/CD39 nucleoside phosphatase family protein note GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14240.3p transcript_id AT1G14240.3 protein_id AT1G14240.3p transcript_id AT1G14240.3
At1g14250	chr1:004868675	0.0	W/4868675-4869251,4869478-4869590,4869815-4869922,4870120-4870162,4870307-4870504,4870587-4870684,4870783-4870979,4871071-4871203	AT1G14250.1 CDS GDA1/CD39 nucleoside phosphatase family protein [TAIR10] CDS go_component vacuole|GO:0005773|15539469|IDA go_function hydrolase activity|GO:0016787||IEA go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS product GDA1/CD39 nucleoside phosphatase family protein note GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14240.4); Has 1463 Blast hits to 1456 proteins in 234 species: Archae - 0; Bacteria - 39; Metazoa - 610; Fungi - 315; Plants - 332; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink). protein_id AT1G14250.1p transcript_id AT1G14250.1 protein_id AT1G14250.1p transcript_id AT1G14250.1
At1g14260	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.1 CDS RING/FYVE/PHD zinc finger superfamily protein [TAIR10] CDS gene_syn F14L17.2, F14L17_2 go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA go_function zinc ion binding|GO:0008270||ISS product RING/FYVE/PHD zinc finger superfamily protein note RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3); Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 745; Fungi - 130; Plants - 638; Viruses - 54; Other Eukaryotes - 226 (source: NCBI BLink). protein_id AT1G14260.1p transcript_id AT1G14260.1 protein_id AT1G14260.1p transcript_id AT1G14260.1
At1g14260	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.2 CDS RING/FYVE/PHD zinc finger superfamily protein [TAIR10] CDS gene_syn F14L17.2, F14L17_2 go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA go_function zinc ion binding|GO:0008270||ISS product RING/FYVE/PHD zinc finger superfamily protein note RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3); Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 745; Fungi - 130; Plants - 638; Viruses - 54; Other Eukaryotes - 226 (source: NCBI BLink). protein_id AT1G14260.2p transcript_id AT1G14260.2 protein_id AT1G14260.2p transcript_id AT1G14260.2
AT1G14260	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.3 AT1G14260.3 CDS RING/FYVE/PHD zinc finger superfamily protein
At1g14270	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876443	AT1G14270.3 CDS CAAX amino terminal protease family protein [TAIR10] CDS gene_syn F14L17.3, F14L17_3 go_component membrane|GO:0016020||IEA go_process proteolysis|GO:0006508||ISS product CAAX amino terminal protease family protein note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 3768 Blast hits to 3768 proteins in 1001 species: Archae - 88; Bacteria - 3268; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink). protein_id AT1G14270.3p transcript_id AT1G14270.3 protein_id AT1G14270.3p transcript_id AT1G14270.3
At1g14270	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876443	AT1G14270.4 CDS CAAX amino terminal protease family protein [TAIR10] CDS gene_syn F14L17.3, F14L17_3 go_component membrane|GO:0016020||IEA go_process proteolysis|GO:0006508||ISS product CAAX amino terminal protease family protein note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14270.4p transcript_id AT1G14270.4 protein_id AT1G14270.4p transcript_id AT1G14270.4
At1g14270	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876468,4876670-4876767,4876941-4877195	AT1G14270.1 CDS CAAX amino terminal protease family protein [TAIR10] CDS gene_syn F14L17.3, F14L17_3 go_component membrane|GO:0016020||IEA go_process proteolysis|GO:0006508||ISS product CAAX amino terminal protease family protein note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 3763 Blast hits to 3760 proteins in 994 species: Archae - 88; Bacteria - 3260; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink). protein_id AT1G14270.1p transcript_id AT1G14270.1 protein_id AT1G14270.1p transcript_id AT1G14270.1
At1g14270	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876503	AT1G14270.2 CDS CAAX amino terminal protease family protein [TAIR10] CDS gene_syn F14L17.3, F14L17_3 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process proteolysis|GO:0006508||ISS product CAAX amino terminal protease family protein note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14270.2p transcript_id AT1G14270.2 protein_id AT1G14270.2p transcript_id AT1G14270.2
At1g14280	chr1:004877657	0.0	W/4877657-4878985	AT1G14280.1 CDS phytochrome kinase substrate 2 [TAIR10] CDS gene_syn F14L17.4, F14L17_4, PKS2, phytochrome kinase substrate 2 gene PKS2 function Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. Forms a complex with Phot1, Phot2 and NPH3. go_component plasma membrane|GO:0005886|20071603|IDA go_process phototropism|GO:0009638|16777956|IGI go_process leaf development|GO:0048366|20071603|IMP go_function molecular_function|GO:0003674||ND product phytochrome kinase substrate 2 note phytochrome kinase substrate 2 (PKS2); BEST Arabidopsis thaliana protein match is: phytochrome kinase substrate 1 (TAIR:AT2G02950.1); Has 337 Blast hits to 325 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 6; Plants - 286; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). protein_id AT1G14280.1p transcript_id AT1G14280.1 protein_id AT1G14280.1p transcript_id AT1G14280.1
AT1G14290	chr1:004880307	0.0	C/4880307-4880861,4880969-4880971	AT1G14290.2 AT1G14290.2 CDS sphingoid base hydroxylase 2
At1g14290	chr1:004880307	0.0	C/4880307-4880861,4881560-4881784	AT1G14290.1 CDS sphingoid base hydroxylase 2 [TAIR10] CDS gene_syn F14L17.5, F14L17_5, SBH2, sphingoid base hydroxylase 2 gene SBH2 function Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth. go_component endoplasmic reticulum|GO:0005783|18643979|IDA go_component Golgi apparatus|GO:0005794|18643979|IDA go_process photomorphogenesis|GO:0009640|18612100|IMP go_process sphingoid biosynthetic process|GO:0046520|18612100|IMP go_function sphingosine hydroxylase activity|GO:0000170|11297741|IGI go_function catalytic activity|GO:0003824||ISS product sphingoid base hydroxylase 2 note sphingoid base hydroxylase 2 (SBH2); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 1 (TAIR:AT1G69640.1); Has 2314 Blast hits to 2272 proteins in 379 species: Archae - 0; Bacteria - 367; Metazoa - 413; Fungi - 680; Plants - 393; Viruses - 3; Other Eukaryotes - 458 (source: NCBI BLink). protein_id AT1G14290.1p transcript_id AT1G14290.1 protein_id AT1G14290.1p transcript_id AT1G14290.1
At1g14300	chr1:004882654	0.0	C/4882654-4882713,4882817-4882930,4883045-4883176,4883277-4883390,4883492-4883637,4883930-4884008,4884112-4884309,4884399-4884521,4884633-4884686	AT1G14300.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn F14L17.6, F14L17_6 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0507 (InterPro:IPR007205), Armadillo-like helical (InterPro:IPR011989), Uncharacterised protein family UPF0507, C-terminal (InterPro:IPR007206), Armadillo-type fold (InterPro:IPR016024); Has 331 Blast hits to 331 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 149; Plants - 51; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). protein_id AT1G14300.1p transcript_id AT1G14300.1 protein_id AT1G14300.1p transcript_id AT1G14300.1
At1g14300	chr1:004882654	0.0	C/4882654-4882713,4882817-4883176,4883277-4883390,4883492-4883637,4883930-4884008,4884112-4884309,4884399-4884521,4884633-4884686	AT1G14300.2 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn F14L17.6, F14L17_6 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0507 (InterPro:IPR007205), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Uncharacterised protein family UPF0507, C-terminal (InterPro:IPR007206). protein_id AT1G14300.2p transcript_id AT1G14300.2 protein_id AT1G14300.2p transcript_id AT1G14300.2
At1g14310	chr1:004885049	0.0	W/4885049-4885151,4885329-4885439,4885523-4885605,4885705-4885788,4885879-4885954,4886041-4886113,4886211-4886284,4886408-4886501,4886606-4886672	AT1G14310.1 CDS Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [TAIR10] CDS gene_syn F14L17.7, F14L17_7 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function phosphoglycolate phosphatase activity|GO:0008967||IEA go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND go_function hydrolase activity|GO:0016787||ISS product Haloacid dehalogenase-like hydrolase (HAD) superfamily protein note Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G41250.1); Has 5555 Blast hits to 5555 proteins in 1508 species: Archae - 313; Bacteria - 4016; Metazoa - 183; Fungi - 73; Plants - 110; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink). protein_id AT1G14310.1p transcript_id AT1G14310.1 protein_id AT1G14310.1p transcript_id AT1G14310.1
At1g14315	chr1:004886861	0.0	C/4886861-4887377,4887539-4887933	AT1G14315.2 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1); Has 1107 Blast hits to 1070 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1105; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G14315.2p transcript_id AT1G14315.2 protein_id AT1G14315.2p transcript_id AT1G14315.2
At1g14315	chr1:004886861	0.0	C/4886861-4887439	AT1G14315.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14315.1p transcript_id AT1G14315.1 protein_id AT1G14315.1p transcript_id AT1G14315.1
At1g14320	chr1:004888270	0.0	W/4888270-4888279,4888549-4889050,4889146-4889227,4889340-4889408	AT1G14320.1 CDS Ribosomal protein L16p/L10e family protein [TAIR10] CDS gene_syn F14L17.9, F14L17_9, RPL10, RPL10A, SAC52, SUPPRESSOR OF ACAULIS 52, ribosomal protein L10, ribosomal protein L10 A gene SAC52 function Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself. go_component nucleolus|GO:0005730|15496452|IDA go_component vacuole|GO:0005773|15215502|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process translation|GO:0006412|18694459|TAS go_component large ribosomal subunit|GO:0015934||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_process cellular response to UV-B|GO:0071493|20516338|IMP go_function structural constituent of ribosome|GO:0003735|20516338|IPI go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L16p/L10e family protein note SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: cellular response to UV-B, translation; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1679 Blast hits to 1677 proteins in 606 species: Archae - 325; Bacteria - 13; Metazoa - 562; Fungi - 162; Plants - 159; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink). protein_id AT1G14320.1p transcript_id AT1G14320.1 protein_id AT1G14320.1p transcript_id AT1G14320.1
At1g14320	chr1:004888650	0.0	W/4888650-4888766,4888938-4889050,4889146-4889227,4889340-4889408	AT1G14320.2 CDS Ribosomal protein L16p/L10e family protein [TAIR10] CDS gene_syn F14L17.9, F14L17_9, RPL10, RPL10A, SAC52, SUPPRESSOR OF ACAULIS 52, ribosomal protein L10, ribosomal protein L10 A gene SAC52 function Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself. go_component plasma membrane|GO:0005886|17151019|IDA go_component large ribosomal subunit|GO:0015934||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process translation|GO:0006412||ISS go_process cellular response to UV-B|GO:0071493|20516338|IMP go_function structural constituent of ribosome|GO:0003735|20516338|IPI go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L16p/L10e family protein note SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: cellular response to UV-B, translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1844 Blast hits to 1606 proteins in 584 species: Archae - 300; Bacteria - 0; Metazoa - 671; Fungi - 224; Plants - 162; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink). protein_id AT1G14320.2p transcript_id AT1G14320.2 protein_id AT1G14320.2p transcript_id AT1G14320.2
At1g14330	chr1:004890375	0.0	C/4890375-4891700	AT1G14330.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F14L17.10, F14L17_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G02870.3); Has 8067 Blast hits to 4582 proteins in 289 species: Archae - 6; Bacteria - 418; Metazoa - 6039; Fungi - 16; Plants - 1102; Viruses - 148; Other Eukaryotes - 338 (source: NCBI BLink). protein_id AT1G14330.1p transcript_id AT1G14330.1 protein_id AT1G14330.1p transcript_id AT1G14330.1
At1g14340	chr1:004897709	0.0	W/4897709-4897827,4897919-4897994,4898080-4898193,4898351-4898776	AT1G14340.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F14L17.11, F14L17_11 go_process oxidation reduction|GO:0055114||IEA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function nucleic acid binding|GO:0003676||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G01210.1); Has 332 Blast hits to 332 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 92; Plants - 229; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G14340.1p transcript_id AT1G14340.1 protein_id AT1G14340.1p transcript_id AT1G14340.1
At1g14345	chr1:004899176	0.0	W/4899176-4899766	AT1G14345.1 CDS NAD(P)-linked oxidoreductase superfamily protein [TAIR10] CDS go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component membrane|GO:0016020|17432890|IDA go_process oxidation reduction|GO:0055114||IEA go_function oxidoreductase activity|GO:0016491||IEA product NAD(P)-linked oxidoreductase superfamily protein note NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); Has 297 Blast hits to 297 proteins in 86 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink). protein_id AT1G14345.1p transcript_id AT1G14345.1 protein_id AT1G14345.1p transcript_id AT1G14345.1
At1g14350	chr1:004908427	0.0	W/4908427-4908519,4908607-4908653,4908820-4908876,4908978-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.1 CDS Duplicated homeodomain-like superfamily protein [TAIR10] CDS gene_syn AtMYB124, F14L17.12, F14L17_12, FLP, FOUR LIPS, MYB124, myb domain protein 124 gene FLP function Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88. go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS go_process guard cell differentiation|GO:0010052|16155180|IGI go_process guard cell differentiation|GO:0010052||NAS go_function DNA binding|GO:0003677|11597504|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Duplicated homeodomain-like superfamily protein note FOUR LIPS (FLP); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 88 (TAIR:AT2G02820.2); Has 8541 Blast hits to 7630 proteins in 544 species: Archae - 0; Bacteria - 2; Metazoa - 904; Fungi - 531; Plants - 5146; Viruses - 6; Other Eukaryotes - 1952 (source: NCBI BLink). protein_id AT1G14350.1p transcript_id AT1G14350.1 protein_id AT1G14350.1p transcript_id AT1G14350.1
At1g14350	chr1:004908427	0.0	W/4908427-4908519,4908607-4908653,4908820-4908876,4908978-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.2 CDS Duplicated homeodomain-like superfamily protein [TAIR10] CDS gene_syn AtMYB124, F14L17.12, F14L17_12, FLP, FOUR LIPS, MYB124, myb domain protein 124 gene FLP function Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88. go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS go_process guard cell differentiation|GO:0010052|16155180|IGI go_process guard cell differentiation|GO:0010052||NAS go_function DNA binding|GO:0003677|11597504|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Duplicated homeodomain-like superfamily protein note FOUR LIPS (FLP); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 88 (TAIR:AT2G02820.2); Has 8538 Blast hits to 7627 proteins in 543 species: Archae - 0; Bacteria - 2; Metazoa - 904; Fungi - 528; Plants - 5146; Viruses - 6; Other Eukaryotes - 1952 (source: NCBI BLink). protein_id AT1G14350.2p transcript_id AT1G14350.2 protein_id AT1G14350.2p transcript_id AT1G14350.2
AT1G14350	chr1:004908641	0.0	W/4908641-4908653,4908923-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.3 AT1G14350.3 CDS Duplicated homeodomain-like superfamily protein
AT1G14350	chr1:004908641	0.0	W/4908641-4908653,4908923-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.4 AT1G14350.4 CDS Duplicated homeodomain-like superfamily protein
At1g14360	chr1:004911362	0.0	C/4911362-4911767,4911865-4911986,4912079-4912182,4912268-4912298,4912413-4912543,4912639-4912736,4912926-4913029	AT1G14360.1 CDS UDP-galactose transporter 3 [TAIR10] CDS gene_syn ATUTR3, F14L17.13, F14L17_13, UDP-galactose transporter 3, UTR3 gene UTR3 go_component endomembrane system|GO:0012505||IEA go_process transmembrane transport|GO:0055085||IEA go_function pyrimidine nucleotide sugar transmembrane transporter activity|GO:0015165||ISS product UDP-galactose transporter 3 note UDP-galactose transporter 3 (UTR3); FUNCTIONS IN: pyrimidine nucleotide sugar transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 1 (TAIR:AT2G02810.1); Has 1048 Blast hits to 1040 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 487; Fungi - 154; Plants - 232; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink). protein_id AT1G14360.1p transcript_id AT1G14360.1 protein_id AT1G14360.1p transcript_id AT1G14360.1
At1g14370	chr1:004915859	0.0	W/4915859-4915925,4916195-4916541,4916636-4916771,4916873-4917009,4917096-4917219,4917490-4917959	AT1G14370.1 CDS protein kinase 2A [TAIR10] CDS gene_syn APK2A, F14L17.14, F14L17_14, PBL2, PBS1-like 2, PROTEIN KINASE 2A, protein kinase 2A gene APK2A function Encodes protein kinase APK2a. go_component chloroplast|GO:0009507||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product protein kinase 2A note protein kinase 2A (APK2A); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase 2B (TAIR:AT2G02800.2); Has 112844 Blast hits to 111359 proteins in 3847 species: Archae - 89; Bacteria - 13219; Metazoa - 41419; Fungi - 9318; Plants - 32676; Viruses - 341; Other Eukaryotes - 15782 (source: NCBI BLink). protein_id AT1G14370.1p transcript_id AT1G14370.1 protein_id AT1G14370.1p transcript_id AT1G14370.1
AT1G14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4918953,4919224-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.4 AT1G14380.4 CDS IQ-domain 28
At1g14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4919037,4919224-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.2 CDS IQ-domain 28 [TAIR10] CDS gene_syn F14L17.15, F14L17_15, IQ-domain 28, IQD28 gene IQD28 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function calmodulin binding|GO:0005516||ISS product IQ-domain 28 note IQ-domain 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14380.2p transcript_id AT1G14380.2 protein_id AT1G14380.2p transcript_id AT1G14380.2
AT1G14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4919037,4919224-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.6 AT1G14380.6 CDS IQ-domain 28
AT1G14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4919037,4919224-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.7 AT1G14380.7 CDS IQ-domain 28
At1g14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.1 CDS IQ-domain 28 [TAIR10] CDS gene_syn F14L17.15, F14L17_15, IQ-domain 28, IQD28 gene IQD28 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function calmodulin binding|GO:0005516||ISS product IQ-domain 28 note IQ-domain 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1); Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2; Bacteria - 474; Metazoa - 2682; Fungi - 509; Plants - 1003; Viruses - 37; Other Eukaryotes - 2095 (source: NCBI BLink). protein_id AT1G14380.1p transcript_id AT1G14380.1 protein_id AT1G14380.1p transcript_id AT1G14380.1
At1g14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.3 CDS IQ-domain 28 [TAIR10] CDS gene_syn F14L17.15, F14L17_15, IQ-domain 28, IQD28 gene IQD28 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function calmodulin binding|GO:0005516||ISS product IQ-domain 28 note IQ-domain 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14380.3p transcript_id AT1G14380.3 protein_id AT1G14380.3p transcript_id AT1G14380.3
AT1G14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.5 AT1G14380.5 CDS IQ-domain 28
At1g14390	chr1:004924277	0.0	W/4924277-4925522,4925599-4925720,4925800-4926046,4926127-4926320,4926417-4926791	AT1G14390.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn F14L17.16, F14L17_16 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G02780.1); Has 96517 Blast hits to 51613 proteins in 1566 species: Archae - 24; Bacteria - 6061; Metazoa - 18233; Fungi - 1323; Plants - 64840; Viruses - 89; Other Eukaryotes - 5947 (source: NCBI BLink). protein_id AT1G14390.1p transcript_id AT1G14390.1 protein_id AT1G14390.1p transcript_id AT1G14390.1
AT1G14390	chr1:004924277	0.0	W/4924277-4925522,4925599-4925720,4925800-4926046,4926127-4926320,4926417-4926794	AT1G14390.2 AT1G14390.2 CDS Leucine-rich repeat protein kinase family protein
At1g14400	chr1:004927294	0.0	C/4927294-4927422,4927518-4927606,4927704-4927793,4927890-4927915,4928012-4928136	AT1G14400.1 CDS ubiquitin carrier protein 1 [TAIR10] CDS gene_syn ATUBC1, F14L17.17, F14L17_17, UBC1, UBIQUITIN CARRIER PROTEIN 1, UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 gene UBC1 function ubiquitin carrier protein go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA go_process negative regulation of flower development|GO:0009910|18798874|IGI go_process leaf morphogenesis|GO:0009965|18798874|IGI go_process vegetative to reproductive phase transition of meristem|GO:0010228|18849490|IGI go_process histone H2B ubiquitination|GO:0033523|18849490|IGI go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA go_function ubiquitin-protein ligase activity|GO:0004842||ISS product ubiquitin carrier protein 1 note ubiquitin carrier protein 1 (UBC1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 10640 Blast hits to 10586 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4553; Fungi - 2331; Plants - 2017; Viruses - 26; Other Eukaryotes - 1711 (source: NCBI BLink). protein_id AT1G14400.1p transcript_id AT1G14400.1 protein_id AT1G14400.1p transcript_id AT1G14400.1
At1g14400	chr1:004927294	0.0	C/4927294-4927422,4927518-4927606,4927704-4927793,4927890-4927915,4928012-4928136	AT1G14400.2 CDS ubiquitin carrier protein 1 [TAIR10] CDS gene_syn ATUBC1, F14L17.17, F14L17_17, UBC1, UBIQUITIN CARRIER PROTEIN 1, UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 gene UBC1 function ubiquitin carrier protein go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA go_process negative regulation of flower development|GO:0009910|18798874|IGI go_process leaf morphogenesis|GO:0009965|18798874|IGI go_process vegetative to reproductive phase transition of meristem|GO:0010228|18849490|IGI go_process histone H2B ubiquitination|GO:0033523|18849490|IGI go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA go_function ubiquitin-protein ligase activity|GO:0004842||ISS product ubiquitin carrier protein 1 note ubiquitin carrier protein 1 (UBC1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14400.2p transcript_id AT1G14400.2 protein_id AT1G14400.2p transcript_id AT1G14400.2
At1g14410	chr1:004929352	0.0	C/4929352-4929471,4929563-4929651,4929725-4929798,4929878-4929972,4930106-4930198,4930291-4930391,4930591-4930810	AT1G14410.1 CDS ssDNA-binding transcriptional regulator [TAIR10] CDS gene_syn A. THALIANA WHIRLY 1, ATWHY1, F14L17.18, F14L17_18, PTAC1, WHIRLY 1, WHY1 gene WHY1 function Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length. go_component nucleoid|GO:0009295|16326926|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component telomerase holoenzyme complex|GO:0005697|17217467|IDA go_component chloroplast|GO:0009507|15967440|IDA go_component plastid chromosome|GO:0009508|16326926|IDA go_process defense response|GO:0006952|15708347|TAS go_process negative regulation of telomere maintenance via telomerase|GO:0032211|17217467|IMP go_function DNA binding|GO:0003677|15967440|ISS go_function telomeric DNA binding|GO:0042162|17217467|IDA product ssDNA-binding transcriptional regulator note WHIRLY 1 (WHY1); FUNCTIONS IN: DNA binding, telomeric DNA binding; INVOLVED IN: negative regulation of telomere maintenance via telomerase, defense response; LOCATED IN: plastid chromosome, chloroplast, nucleoid, telomerase holoenzyme complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT2G02740.2); Has 106 Blast hits to 105 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G14410.1p transcript_id AT1G14410.1 protein_id AT1G14410.1p transcript_id AT1G14410.1
At1g14420	chr1:004931844	0.0	C/4931844-4932326,4932424-4933111,4933197-4933405	AT1G14420.1 CDS Pectate lyase family protein [TAIR10] CDS gene_syn AT59, F14L17.19, F14L17_19 gene AT59 go_component endomembrane system|GO:0012505||IEA go_process plant-type cell wall organization|GO:0009664|9278171|TAS go_function lyase activity|GO:0016829||ISS go_function pectate lyase activity|GO:0030570|9278171|ISS go_function pectate lyase activity|GO:0030570||ISS product Pectate lyase family protein note AT59; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT2G02720.1); Has 1736 Blast hits to 1725 proteins in 285 species: Archae - 2; Bacteria - 722; Metazoa - 0; Fungi - 281; Plants - 703; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). protein_id AT1G14420.1p transcript_id AT1G14420.1 protein_id AT1G14420.1p transcript_id AT1G14420.1
At1g14430	chr1:004934359	0.0	W/4934359-4936053	AT1G14430.1 CDS glyoxal oxidase-related protein [TAIR10] CDS gene_syn F14L17.20, F14L17_20 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product glyoxal oxidase-related protein note glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT3G57620.1); Has 1265 Blast hits to 1255 proteins in 183 species: Archae - 0; Bacteria - 321; Metazoa - 2; Fungi - 244; Plants - 682; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT1G14430.1p transcript_id AT1G14430.1 protein_id AT1G14430.1p transcript_id AT1G14430.1
At1g14440	chr1:004939076	0.0	C/4939076-4940014	AT1G14440.1 CDS homeobox protein 31 [TAIR10] CDS gene_syn AtHB31, F14L17.21, F14L17_21, HB31, homeobox protein 31 gene HB31 go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_component cellular_component|GO:0005575||ND go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product homeobox protein 31 note homeobox protein 31 (HB31); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 21 (TAIR:AT2G02540.1); Has 602 Blast hits to 562 proteins in 67 species: Archae - 0; Bacteria - 10; Metazoa - 45; Fungi - 3; Plants - 505; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). protein_id AT1G14440.1p transcript_id AT1G14440.1 protein_id AT1G14440.1p transcript_id AT1G14440.1
At1g14440	chr1:004939076	0.0	C/4939076-4940014	AT1G14440.2 CDS homeobox protein 31 [TAIR10] CDS gene_syn AtHB31, F14L17.21, F14L17_21, HB31, homeobox protein 31 gene HB31 go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_component cellular_component|GO:0005575||ND go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product homeobox protein 31 note homeobox protein 31 (HB31); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 21 (TAIR:AT2G02540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14440.2p transcript_id AT1G14440.2 protein_id AT1G14440.2p transcript_id AT1G14440.2
AT1G14453	chr1:004947330	0.0	W/4947330-4947566,4947944-4947976	AT1G14453.1 AT1G14453.1 CDS hypothetical protein
At1g14450	chr1:004947337	0.0	C/4947337-4947558	AT1G14450.1 CDS NADH dehydrogenase (ubiquinone)s [TAIR10] CDS gene_syn F14L17.22, F14L17_22 go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA go_component mitochondrial membrane|GO:0031966|16407270|IDA go_component respiratory chain complex I|GO:0045271|16407270|IDA go_process photorespiration|GO:0009853|16407270|TAS product NADH dehydrogenase (ubiquinone)s note NADH dehydrogenase (ubiquinone)s; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, B12 subunit (InterPro:IPR012576); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase (ubiquinone)s (TAIR:AT2G02510.1); Has 62 Blast hits to 62 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 53; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G14450.1p transcript_id AT1G14450.1 protein_id AT1G14450.1p transcript_id AT1G14450.1
AT1G14450	chr1:004947337	0.0	C/4947337-4947630	AT1G14450.2 AT1G14450.2 CDS NADH dehydrogenase (ubiquinone)s
At1g14455	chr1:004947985	0.0	C/4947985-4948278	AT1G14455.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14455.1p transcript_id AT1G14455.1 protein_id AT1G14455.1p transcript_id AT1G14455.1
At1g14460	chr1:004948962	0.0	C/4948962-4949045,4949138-4949219,4949302-4949776,4949855-4950364,4950455-4950674,4950771-4952750	AT1G14460.1 CDS AAA-type ATPase family protein [TAIR10] CDS gene_syn F14L17.24, F14L17_24 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process DNA replication|GO:0006260||IEA go_function nucleotide binding|GO:0000166||IEA go_function DNA binding|GO:0003677||IEA go_function DNA-directed DNA polymerase activity|GO:0003887||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA product AAA-type ATPase family protein note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G02480.1); Has 16118 Blast hits to 16088 proteins in 2833 species: Archae - 487; Bacteria - 9881; Metazoa - 404; Fungi - 514; Plants - 302; Viruses - 52; Other Eukaryotes - 4478 (source: NCBI BLink). protein_id AT1G14460.1p transcript_id AT1G14460.1 protein_id AT1G14460.1p transcript_id AT1G14460.1
At1g14470	chr1:004954080	0.0	W/4954080-4955702	AT1G14470.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F14L17.25, F14L17_25 go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 45588 Blast hits to 14013 proteins in 255 species: Archae - 1; Bacteria - 22; Metazoa - 282; Fungi - 244; Plants - 44188; Viruses - 0; Other Eukaryotes - 851 (source: NCBI BLink). protein_id AT1G14470.1p transcript_id AT1G14470.1 protein_id AT1G14470.1p transcript_id AT1G14470.1
At1g14480	chr1:004956404	0.0	W/4956404-4956871,4957160-4957888	AT1G14480.2 CDS Ankyrin repeat family protein [TAIR10] CDS gene_syn F14L17.26, F14L17_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Ankyrin repeat family protein note Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G14500.1). protein_id AT1G14480.2p transcript_id AT1G14480.2 protein_id AT1G14480.2p transcript_id AT1G14480.2
At1g14480	chr1:004956404	0.0	W/4956404-4957000,4957160-4957888	AT1G14480.1 CDS Ankyrin repeat family protein [TAIR10] CDS gene_syn F14L17.26, F14L17_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Ankyrin repeat family protein note Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G14500.1); Has 8895 Blast hits to 5065 proteins in 313 species: Archae - 10; Bacteria - 564; Metazoa - 4493; Fungi - 246; Plants - 1339; Viruses - 29; Other Eukaryotes - 2214 (source: NCBI BLink). protein_id AT1G14480.1p transcript_id AT1G14480.1 protein_id AT1G14480.1p transcript_id AT1G14480.1
At1g14490	chr1:004958705	0.0	C/4958705-4959325	AT1G14490.1 CDS Predicted AT-hook DNA-binding family protein [TAIR10] CDS gene_syn F14L17.27, F14L17_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Predicted AT-hook DNA-binding family protein note Predicted AT-hook DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT5G49700.1); Has 747 Blast hits to 743 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 747; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14490.1p transcript_id AT1G14490.1 protein_id AT1G14490.1p transcript_id AT1G14490.1
AT1G14490	chr1:004958705	0.0	C/4958705-4959382	AT1G14490.2 AT1G14490.2 CDS Predicted AT-hook DNA-binding family protein
At1g14500	chr1:004960375	0.0	W/4960375-4960971,4961067-4961780	AT1G14500.1 CDS Ankyrin repeat family protein [TAIR10] CDS gene_syn F14L17.28, F14L17_28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Ankyrin repeat family protein note Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G14480.1); Has 10084 Blast hits to 5540 proteins in 307 species: Archae - 14; Bacteria - 721; Metazoa - 5684; Fungi - 405; Plants - 1520; Viruses - 27; Other Eukaryotes - 1713 (source: NCBI BLink). protein_id AT1G14500.1p transcript_id AT1G14500.1 protein_id AT1G14500.1p transcript_id AT1G14500.1
At1g14510	chr1:004962171	0.0	C/4962171-4962443,4962539-4962665,4963066-4963294,4963810-4963842,4964058-4964154	AT1G14510.1 CDS alfin-like 7 [TAIR10] CDS gene_syn AL7, F14L17.29, F14L17_29, alfin-like 7 gene AL7 function AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. go_component nucleus|GO:0005634|19154204|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function methylated histone residue binding|GO:0035064|19154204|IDA product alfin-like 7 note alfin-like 7 (AL7); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 6 (TAIR:AT2G02470.1); Has 1825 Blast hits to 1776 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 841; Fungi - 323; Plants - 580; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). protein_id AT1G14510.1p transcript_id AT1G14510.1 protein_id AT1G14510.1p transcript_id AT1G14510.1
At1g14518	chr1:004966810	0.0	C/4966810-4967264,4967344-4967493	AT1G14518.1 [TAIR10] ncRNA function Unknown gene go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G14518.1
At1g14520	chr1:004968376	0.0	C/4968376-4968402,4968501-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969802,4969918-4969954	AT1G14520.2 CDS myo-inositol oxygenase 1 [TAIR10] CDS gene_syn F14L17.30, F14L17_30, MIOX1, myo-inositol oxygenase 1 gene MIOX1 function Encodes MIOX1. Belongs to myo-inositol oxygenase gene family. go_component cytoplasm|GO:0005737||IEA go_process syncytium formation|GO:0006949|19691674|IGI go_function oxidoreductase activity|GO:0016491||ISS go_function inositol oxygenase activity|GO:0050113|15660207|IMP product myo-inositol oxygenase 1 note myo-inositol oxygenase 1 (MIOX1); FUNCTIONS IN: inositol oxygenase activity, oxidoreductase activity; INVOLVED IN: syncytium formation; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: myo-inositol oxygenase 2 (TAIR:AT2G19800.1); Has 482 Blast hits to 480 proteins in 154 species: Archae - 0; Bacteria - 27; Metazoa - 132; Fungi - 124; Plants - 97; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). protein_id AT1G14520.2p transcript_id AT1G14520.2 protein_id AT1G14520.2p transcript_id AT1G14520.2
At1g14520	chr1:004968376	0.0	C/4968376-4968402,4968501-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969808,4969918-4969954	AT1G14520.1 CDS myo-inositol oxygenase 1 [TAIR10] CDS gene_syn F14L17.30, F14L17_30, MIOX1, myo-inositol oxygenase 1 gene MIOX1 function Encodes MIOX1. Belongs to myo-inositol oxygenase gene family. go_component cytoplasm|GO:0005737||IEA go_process syncytium formation|GO:0006949|19691674|IGI go_function oxidoreductase activity|GO:0016491||ISS go_function inositol oxygenase activity|GO:0050113|15660207|IMP product myo-inositol oxygenase 1 note myo-inositol oxygenase 1 (MIOX1); FUNCTIONS IN: inositol oxygenase activity, oxidoreductase activity; INVOLVED IN: syncytium formation; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: myo-inositol oxygenase 2 (TAIR:AT2G19800.1); Has 490 Blast hits to 488 proteins in 159 species: Archae - 0; Bacteria - 27; Metazoa - 132; Fungi - 132; Plants - 97; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). protein_id AT1G14520.1p transcript_id AT1G14520.1 protein_id AT1G14520.1p transcript_id AT1G14520.1
AT1G14520	chr1:004968376	0.0	C/4968376-4968402,4968501-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969808,4969918-4969954	AT1G14520.4 AT1G14520.4 CDS myo-inositol oxygenase 1
AT1G14520	chr1:004968384	0.0	C/4968384-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969808,4969918-4969954	AT1G14520.3 AT1G14520.3 CDS myo-inositol oxygenase 1
At1g14530	chr1:004971420	0.0	C/4971420-4971512,4971648-4971725,4971854-4971907,4971998-4972061,4972323-4972368,4972456-4972528,4972702-4972773,4972849-4972941,4973034-4973086,4973166-4973256,4973433-4973597	AT1G14530.2 CDS tobamovirus multiplication-like protein (DUF1084) [TAIR10] CDS gene_syn F14L17.31, F14L17_31, THH1, TOM THREE HOMOLOG 1 gene THH1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function virion binding|GO:0046790|11836427|IPI product Protein of unknown function (DUF1084) note TOM THREE HOMOLOG 1 (THH1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication protein 3 (TAIR:AT2G02180.1); Has 257 Blast hits to 256 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). protein_id AT1G14530.2p transcript_id AT1G14530.2 protein_id AT1G14530.2p transcript_id AT1G14530.2
At1g14530	chr1:004971827	0.0	C/4971827-4971907,4971998-4972061,4972323-4972368,4972456-4972528,4972702-4972773,4972849-4972941,4973034-4973086,4973166-4973256,4973433-4973597	AT1G14530.1 CDS tobamovirus multiplication-like protein (DUF1084) [TAIR10] CDS gene_syn F14L17.31, F14L17_31, THH1, TOM THREE HOMOLOG 1 gene THH1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function virion binding|GO:0046790|11836427|IPI product Protein of unknown function (DUF1084) note TOM THREE HOMOLOG 1 (THH1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication protein 3 (TAIR:AT2G02180.1); Has 257 Blast hits to 256 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). protein_id AT1G14530.1p transcript_id AT1G14530.1 protein_id AT1G14530.1p transcript_id AT1G14530.1
At1g14540	chr1:004974233	0.0	C/4974233-4974624,4974712-4974877,4975099-4975290,4975403-4975600	AT1G14540.1 CDS Peroxidase superfamily protein [TAIR10] CDS gene_syn F14L17.32, F14L17_32 go_component endomembrane system|GO:0012505||IEA go_process response to oxidative stress|GO:0006979||IEA go_process oxidation reduction|GO:0055114||IEA go_function peroxidase activity|GO:0004601||IEA go_function heme binding|GO:0020037||IEA go_function peroxidase activity|GO:0004601||ISS product Peroxidase superfamily protein note Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G14550.1); Has 4581 Blast hits to 4555 proteins in 302 species: Archae - 0; Bacteria - 6; Metazoa - 19; Fungi - 179; Plants - 4302; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). protein_id AT1G14540.1p transcript_id AT1G14540.1 protein_id AT1G14540.1p transcript_id AT1G14540.1
At1g14549	chr1:004978794	0.0	C/4978794-4978907	AT1G14549.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14549.1p transcript_id AT1G14549.1 protein_id AT1G14549.1p transcript_id AT1G14549.1
At1g14550	chr1:004979028	0.0	W/4979028-4979240,4979326-4979517,4979607-4979775,4979933-4980324	AT1G14550.1 CDS Peroxidase superfamily protein [TAIR10] CDS gene_syn F14L17.33, F14L17_33 go_component endomembrane system|GO:0012505||IEA go_process response to oxidative stress|GO:0006979||IEA go_process oxidation reduction|GO:0055114||IEA go_function peroxidase activity|GO:0004601||IEA go_function heme binding|GO:0020037||IEA go_function peroxidase activity|GO:0004601||ISS product Peroxidase superfamily protein note Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G14540.1); Has 4724 Blast hits to 4696 proteins in 306 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 328; Plants - 4308; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). protein_id AT1G14550.1p transcript_id AT1G14550.1 protein_id AT1G14550.1p transcript_id AT1G14550.1
At1g14560	chr1:004981300	0.0	W/4981300-4981455,4981615-4981700,4981785-4981992,4982105-4982237,4982492-4982676,4982764-4982898,4982990-4983082	AT1G14560.1 CDS Mitochondrial substrate carrier family protein [TAIR10] CDS gene_syn T5E21.6, T5E21_6 go_component mitochondrial inner membrane|GO:0005743||IEA go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component mitochondrial inner membrane|GO:0005743||ISS go_process transport|GO:0006810||ISS go_process mitochondrial transport|GO:0006839||ISS go_function transporter activity|GO:0005215||ISS go_function binding|GO:0005488||ISS product Mitochondrial substrate carrier family protein note Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: endomembrane system, mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Graves disease carrier protein (InterPro:IPR002167); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT4G26180.1); Has 25798 Blast hits to 13799 proteins in 460 species: Archae - 0; Bacteria - 2; Metazoa - 10868; Fungi - 7493; Plants - 4688; Viruses - 0; Other Eukaryotes - 2747 (source: NCBI BLink). protein_id AT1G14560.1p transcript_id AT1G14560.1 protein_id AT1G14560.1p transcript_id AT1G14560.1
AT1G14560	chr1:004981300	0.0	W/4981300-4981455,4981615-4981700,4981785-4981992,4982105-4982237,4982492-4982676,4982764-4982922	AT1G14560.2 AT1G14560.2 CDS Mitochondrial substrate carrier family protein
AT1G14560	chr1:004981837	0.0	W/4981837-4981992,4982105-4982237,4982492-4982676,4982764-4982898,4982990-4983082	AT1G14560.3 AT1G14560.3 CDS Mitochondrial substrate carrier family protein
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985428-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.1 CDS UBX domain-containing protein [TAIR10] CDS gene_syn T5E21.7, T5E21_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product UBX domain-containing protein note UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2); Has 594 Blast hits to 577 proteins in 178 species: Archae - 0; Bacteria - 4; Metazoa - 212; Fungi - 143; Plants - 155; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). protein_id AT1G14570.1p transcript_id AT1G14570.1 protein_id AT1G14570.1p transcript_id AT1G14570.1
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985428-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.2 CDS UBX domain-containing protein [TAIR10] CDS gene_syn T5E21.7, T5E21_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product UBX domain-containing protein note UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14570.2p transcript_id AT1G14570.2 protein_id AT1G14570.2p transcript_id AT1G14570.2
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985491-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.3 CDS UBX domain-containing protein [TAIR10] CDS gene_syn T5E21.7, T5E21_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product UBX domain-containing protein note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 596 Blast hits to 582 proteins in 180 species: Archae - 0; Bacteria - 6; Metazoa - 214; Fungi - 136; Plants - 152; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). protein_id AT1G14570.3p transcript_id AT1G14570.3 protein_id AT1G14570.3p transcript_id AT1G14570.3
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985491-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.4 CDS UBX domain-containing protein [TAIR10] CDS gene_syn T5E21.7, T5E21_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product UBX domain-containing protein note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 596 Blast hits to 582 proteins in 180 species: Archae - 0; Bacteria - 6; Metazoa - 214; Fungi - 136; Plants - 152; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). protein_id AT1G14570.4p transcript_id AT1G14570.4 protein_id AT1G14570.4p transcript_id AT1G14570.4
AT1G14580	chr1:004990028	0.0	W/4990028-4990256,4990484-4990880,4991623-4992442	AT1G14580.3 AT1G14580.3 CDS C2H2-like zinc finger protein
At1g14580	chr1:004990070	0.0	W/4990070-4990256,4990484-4990880,4991623-4992442	AT1G14580.1 CDS C2H2-like zinc finger protein [TAIR10] CDS gene_syn T5E21.8, T5E21_8 go_component intracellular|GO:0005622||IEA go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-like zinc finger protein note C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1); Has 50611 Blast hits to 19416 proteins in 277 species: Archae - 0; Bacteria - 3; Metazoa - 47960; Fungi - 322; Plants - 829; Viruses - 2; Other Eukaryotes - 1495 (source: NCBI BLink). protein_id AT1G14580.1p transcript_id AT1G14580.1 protein_id AT1G14580.1p transcript_id AT1G14580.1
At1g14580	chr1:004990070	0.0	W/4990070-4990256,4990484-4990880,4991623-4992442	AT1G14580.2 CDS C2H2-like zinc finger protein [TAIR10] CDS gene_syn T5E21.8, T5E21_8 go_component intracellular|GO:0005622||IEA go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-like zinc finger protein note C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1). protein_id AT1G14580.2p transcript_id AT1G14580.2 protein_id AT1G14580.2p transcript_id AT1G14580.2
AT1G14580	chr1:004991103	0.0	W/4991103-4991293,4991623-4992442	AT1G14580.4 AT1G14580.4 CDS C2H2-like zinc finger protein
At1g14590	chr1:004998957	0.0	C/4998957-4999035,4999125-4999606,4999711-5000076,5000384-5000617	AT1G14590.1 CDS Nucleotide-diphospho-sugar transferase family protein [TAIR10] CDS gene_syn T5E21.9, T5E21_9 go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Nucleotide-diphospho-sugar transferase family protein note Nucleotide-diphospho-sugar transferase family protein; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT2G02061.1); Has 314 Blast hits to 308 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT1G14590.1p transcript_id AT1G14590.1 protein_id AT1G14590.1p transcript_id AT1G14590.1
At1g14600	chr1:005001185	0.0	C/5001185-5001442,5001998-5002121,5002287-5002413,5002790-5002829,5002980-5003056,5003229-5003370	AT1G14600.1 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn T5E21.10, T5E21_10 go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G02060.1); Has 1612 Blast hits to 1608 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1598; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G14600.1p transcript_id AT1G14600.1 protein_id AT1G14600.1p transcript_id AT1G14600.1
At1g14610	chr1:005008502	0.0	C/5008502-5008676,5008779-5008927,5009012-5009111,5009236-5009342,5009427-5009927,5010012-5010263,5010371-5010773,5010917-5011116,5011251-5011421,5011512-5011814,5011889-5011946,5012108-5012187,5012352-5012435,5012523-5012600,5012732-5012815,5012896-5012961,5013134-5013206,5013288-5013466,5013593-5013655,5014167-5014232,5014352-5014486	AT1G14610.1 CDS valyl-tRNA synthetase / valine--tRNA ligase (VALRS) [TAIR10] CDS gene_syn T5E21.11, T5E21_11, TWIN 2, TWN2, VALRS, VALYL TRNA SYNTHETASE gene TWN2 function Required for proper proliferation of basal cells. go_function nucleotide binding|GO:0000166||IEA go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA go_function valine-tRNA ligase activity|GO:0004832||IEA go_function ATP binding|GO:0005524||IEA go_component mitochondrion|GO:0005739|16251277|IDA go_component chloroplast|GO:0009507|16251277|IDA go_process tRNA aminoacylation for protein translation|GO:0006418||ISS go_process embryo development ending in seed dormancy|GO:0009793|16297076|IMP go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS go_function ATP binding|GO:0005524||ISS product valyl-tRNA synthetase / valine--tRNA ligase (VALRS) note TWIN 2 (TWN2); FUNCTIONS IN: valine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (TAIR:AT5G16715.1); Has 39194 Blast hits to 36732 proteins in 3122 species: Archae - 839; Bacteria - 19755; Metazoa - 1534; Fungi - 892; Plants - 369; Viruses - 3; Other Eukaryotes - 15802 (source: NCBI BLink). protein_id AT1G14610.1p transcript_id AT1G14610.1 protein_id AT1G14610.1p transcript_id AT1G14610.1
At1g14620	chr1:005014948	0.0	C/5014948-5015091,5015177-5015302,5015397-5015526,5015622-5015696,5016046-5016111,5016341-5016501	AT1G14620.1 CDS decoy [TAIR10] CDS gene_syn DECOY, T5E21.12, T5E21_12 gene DECOY go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product decoy note DECOY (DECOY); CONTAINS InterPro DOMAIN/s: Ribosomal protein L46 (InterPro:IPR021757); Has 274 Blast hits to 274 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 83; Fungi - 120; Plants - 46; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). protein_id AT1G14620.1p transcript_id AT1G14620.1 protein_id AT1G14620.1p transcript_id AT1G14620.1
At1g14620	chr1:005014985	0.0	C/5014985-5015089,5015177-5015302,5015397-5015526,5015622-5015696,5016046-5016111,5016341-5016501	AT1G14620.2 CDS decoy [TAIR10] CDS gene_syn DECOY, T5E21.12, T5E21_12 gene DECOY go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product decoy note DECOY (DECOY); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L46 (InterPro:IPR021757); Has 231 Blast hits to 231 proteins in 117 species: Archae - 0; Bacteria - 2; Metazoa - 68; Fungi - 103; Plants - 44; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G14620.2p transcript_id AT1G14620.2 protein_id AT1G14620.2p transcript_id AT1G14620.2
At1g14630	chr1:005019995	0.0	W/5019995-5020073,5020327-5020511,5020620-5020671,5020832-5020924,5021174-5021445	AT1G14630.1 CDS XRI1-like protein [TAIR10] CDS gene_syn T5E21.19, T5E21_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 125 Blast hits to 123 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14630.1p transcript_id AT1G14630.1 protein_id AT1G14630.1p transcript_id AT1G14630.1
AT1G14630	chr1:005019995	0.0	W/5019995-5020073,5020327-5020511,5020620-5020671,5020832-5021016	AT1G14630.2 AT1G14630.2 CDS XRI1-like protein
At1g14640	chr1:005023656	0.0	W/5023656-5025716,5025809-5025955	AT1G14640.1 CDS SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [TAIR10] CDS gene_syn T5E21.18, T5E21_18 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_process RNA processing|GO:0006396||ISS go_function RNA binding|GO:0003723||ISS product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: male gametophyte, flower, seed, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 30145 Blast hits to 19260 proteins in 1053 species: Archae - 38; Bacteria - 3368; Metazoa - 12891; Fungi - 4189; Plants - 5021; Viruses - 726; Other Eukaryotes - 3912 (source: NCBI BLink). protein_id AT1G14640.1p transcript_id AT1G14640.1 protein_id AT1G14640.1p transcript_id AT1G14640.1
AT1G14640	chr1:005023656	0.0	W/5023656-5025716,5025809-5025955	AT1G14640.2 AT1G14640.2 CDS SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
At1g14642	chr1:005026364	0.0	W/5026364-5026405,5026496-5026558	AT1G14642.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G14642.1p transcript_id AT1G14642.1 protein_id AT1G14642.1p transcript_id AT1G14642.1
At1g14650	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.1 CDS SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [TAIR10] CDS gene_syn T5E21.13, T5E21_13 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_process RNA processing|GO:0006396||ISS go_function RNA binding|GO:0003723||ISS product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 37228 Blast hits to 22919 proteins in 1210 species: Archae - 39; Bacteria - 4240; Metazoa - 16399; Fungi - 5145; Plants - 6055; Viruses - 891; Other Eukaryotes - 4459 (source: NCBI BLink). protein_id AT1G14650.1p transcript_id AT1G14650.1 protein_id AT1G14650.1p transcript_id AT1G14650.1
At1g14650	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.2 CDS SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [TAIR10] CDS gene_syn T5E21.13, T5E21_13 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_process RNA processing|GO:0006396||ISS go_function RNA binding|GO:0003723||ISS product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14650.2p transcript_id AT1G14650.2 protein_id AT1G14650.2p transcript_id AT1G14650.2
AT1G14650	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.3 AT1G14650.3 CDS SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
At1g14660	chr1:005032163	0.0	C/5032163-5032297,5032379-5032510,5032595-5032692,5032833-5033135,5033226-5033454,5033768-5033875,5033964-5034008,5034145-5034329,5034532-5034584,5034717-5034761,5034856-5034921,5034998-5035050,5035136-5035253,5035333-5035434,5035517-5035674,5035760-5035837,5035913-5036004,5036073-5036123,5036220-5036439	AT1G14660.1 CDS Na+/H+ exchanger 8 [TAIR10] CDS gene_syn ATNHX8, F10B6.1, F10B6_1, NHX8, Na+/H+ exchanger 8, SODIUM HYDROGEN EXCHANGER 8 gene NHX8 function member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification. go_component plasma membrane|GO:0005886|17270011|IDA go_process sodium ion transport|GO:0006814||ISS go_process lithium ion transport|GO:0010351|17270011|IGI go_process lithium ion export|GO:0010352|17270011|IMP go_function lithium:hydrogen antiporter activity|GO:0010348|17270011|IGI go_function sodium:hydrogen antiporter activity|GO:0015385||ISS product Na+/H+ exchanger 8 note Na+/H+ exchanger 8 (NHX8); CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: sodium proton exchanger, putative (NHX7) (SOS1) (TAIR:AT2G01980.1); Has 7911 Blast hits to 7887 proteins in 1969 species: Archae - 132; Bacteria - 5569; Metazoa - 988; Fungi - 148; Plants - 408; Viruses - 0; Other Eukaryotes - 666 (source: NCBI BLink). protein_id AT1G14660.1p transcript_id AT1G14660.1 protein_id AT1G14660.1p transcript_id AT1G14660.1
At1g14660	chr1:005032163	0.0	C/5032163-5032297,5032379-5032510,5032595-5032692,5032833-5033135,5033226-5033454,5033768-5033875,5033964-5034028,5034145-5034181,5034271-5034329,5034532-5034584,5034717-5034761,5034856-5034921,5034998-5035050,5035136-5035253,5035333-5035434,5035517-5035674,5035760-5035837,5035913-5036004,5036073-5036123,5036220-5036439	AT1G14660.2 CDS Na+/H+ exchanger 8 [TAIR10] CDS gene_syn ATNHX8, F10B6.1, F10B6_1, NHX8, Na+/H+ exchanger 8, SODIUM HYDROGEN EXCHANGER 8 gene NHX8 function member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification. go_component plasma membrane|GO:0005886|17270011|IDA go_process sodium ion transport|GO:0006814||ISS go_process lithium ion transport|GO:0010351|17270011|IGI go_process lithium ion export|GO:0010352|17270011|IMP go_function lithium:hydrogen antiporter activity|GO:0010348|17270011|IGI go_function sodium:hydrogen antiporter activity|GO:0015385||ISS product Na+/H+ exchanger 8 note Na+/H+ exchanger 8 (NHX8); CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: sodium proton exchanger, putative (NHX7) (SOS1) (TAIR:AT2G01980.1). protein_id AT1G14660.2p transcript_id AT1G14660.2 protein_id AT1G14660.2p transcript_id AT1G14660.2
At1g14670	chr1:005037669	0.0	W/5037669-5037820,5038100-5038140,5038249-5038834,5038911-5039048,5039159-5039315,5039411-5039895,5039980-5040199	AT1G14670.1 CDS Endomembrane protein 70 protein family [TAIR10] CDS gene_syn F10B6.3, F10B6_3 go_component membrane|GO:0016020|17432890|IDA go_component Golgi apparatus|GO:0005794|16618929|IDA go_component integral to membrane|GO:0016021||ISS go_process transport|GO:0006810||ISS product Endomembrane protein 70 protein family note Endomembrane protein 70 protein family; INVOLVED IN: transport; LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT2G01970.1); Has 1574 Blast hits to 1525 proteins in 319 species: Archae - 0; Bacteria - 2; Metazoa - 610; Fungi - 249; Plants - 451; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink). protein_id AT1G14670.1p transcript_id AT1G14670.1 protein_id AT1G14670.1p transcript_id AT1G14670.1
At1g14680	chr1:005040861	0.0	W/5040861-5041733	AT1G14680.1 CDS early endosome antigen [TAIR10] CDS gene_syn F10B6.4, F10B6_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09060.1); Has 8132 Blast hits to 6366 proteins in 685 species: Archae - 171; Bacteria - 671; Metazoa - 4046; Fungi - 445; Plants - 318; Viruses - 23; Other Eukaryotes - 2458 (source: NCBI BLink). protein_id AT1G14680.1p transcript_id AT1G14680.1 protein_id AT1G14680.1p transcript_id AT1G14680.1
At1g14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.1 CDS basic pentacysteine 2 [TAIR10] CDS gene_syn ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2, BPC2, F10B6.5, F10B6_5, basic pentacysteine 2 gene BPC2 function Arabidopsis GBP Basic Penta Cysteine 1 go_component nucleus|GO:0005634|14731261|IDA go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI go_function DNA binding|GO:0003677|14731261|IPI go_function sequence-specific DNA binding transcription factor activity|GO:0003700|14731261|IPI product basic pentacysteine 2 note basic pentacysteine 2 (BPC2); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 236 Blast hits to 236 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT1G14685.1p transcript_id AT1G14685.1 protein_id AT1G14685.1p transcript_id AT1G14685.1
At1g14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.2 CDS basic pentacysteine 2 [TAIR10] CDS gene_syn ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2, BPC2, F10B6.5, F10B6_5, basic pentacysteine 2 gene BPC2 function Arabidopsis GBP Basic Penta Cysteine 1 go_component nucleus|GO:0005634|14731261|IDA go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI go_function DNA binding|GO:0003677|14731261|IPI go_function sequence-specific DNA binding transcription factor activity|GO:0003700|14731261|IPI product basic pentacysteine 2 note basic pentacysteine 2 (BPC2); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 236 Blast hits to 236 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT1G14685.2p transcript_id AT1G14685.2 protein_id AT1G14685.2p transcript_id AT1G14685.2
At1g14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.3 CDS basic pentacysteine 2 [TAIR10] CDS gene_syn ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2, BPC2, F10B6.5, F10B6_5, basic pentacysteine 2 gene BPC2 function Arabidopsis GBP Basic Penta Cysteine 1 go_component nucleus|GO:0005634|14731261|IDA go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI go_function DNA binding|GO:0003677|14731261|IPI go_function sequence-specific DNA binding transcription factor activity|GO:0003700|14731261|IPI product basic pentacysteine 2 note basic pentacysteine 2 (BPC2); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14685.3p transcript_id AT1G14685.3 protein_id AT1G14685.3p transcript_id AT1G14685.3
AT1G14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.4 AT1G14685.4 CDS basic pentacysteine 2
At1g14686	chr1:005045781	0.0	C/5045781-5046800	AT1G14686.1 CDS ENTH/ANTH/VHS superfamily protein [TAIR10] CDS go_component clathrin coat|GO:0030118||IEA go_process clathrin coat assembly|GO:0048268||IEA go_function phospholipid binding|GO:0005543||IEA go_function phosphatidylinositol binding|GO:0005545||IEA go_function clathrin binding|GO:0030276||IEA go_function binding|GO:0005488||ISS product ENTH/ANTH/VHS superfamily protein note ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT2G01920.1); Has 354 Blast hits to 311 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 352; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14686.1p transcript_id AT1G14686.1 protein_id AT1G14686.1p transcript_id AT1G14686.1
At1g14687	chr1:005048046	0.0	W/5048046-5048552	AT1G14687.1 CDS homeobox protein 32 [TAIR10] CDS gene_syn AtHB32, HB32, homeobox protein 32 gene HB32 go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677|16428600|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product homeobox protein 32 note homeobox protein 32 (HB32); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 26 (TAIR:AT5G60480.1); Has 531 Blast hits to 458 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 531; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14687.1p transcript_id AT1G14687.1 protein_id AT1G14687.1p transcript_id AT1G14687.1
At1g14688	chr1:005049654	0.0	C/5049654-5049834,5049920-5050038,5050160-5050213,5050761-5050879,5050944-5050983	AT1G14688.1 CDS E3 ubiquitin ligase [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: E3 Ubiquitin ligase (InterPro:IPR022170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14688.1p transcript_id AT1G14688.1 protein_id AT1G14688.1p transcript_id AT1G14688.1
At1g14690	chr1:005052090	0.0	C/5052090-5052428,5052518-5052592,5052667-5052740,5052819-5052906,5052976-5053127,5053216-5053375,5053467-5053622,5053710-5053925,5054025-5054294,5054386-5054589,5054859-5054936	AT1G14690.1 CDS microtubule-associated protein 65-7 [TAIR10] CDS gene_syn F10B6.8, F10B6_8, MAP65-7, microtubule-associated protein 65-7 gene MAP65-7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product microtubule-associated protein 65-7 note microtubule-associated protein 65-7 (MAP65-7); CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: Microtubule associated protein (MAP65/ASE1) family protein (TAIR:AT2G01910.1); Has 3902 Blast hits to 3379 proteins in 390 species: Archae - 69; Bacteria - 268; Metazoa - 1928; Fungi - 367; Plants - 438; Viruses - 6; Other Eukaryotes - 826 (source: NCBI BLink). protein_id AT1G14690.1p transcript_id AT1G14690.1 protein_id AT1G14690.1p transcript_id AT1G14690.1
At1g14690	chr1:005052090	0.0	C/5052090-5052428,5052518-5052592,5052667-5052740,5052819-5052906,5052976-5053127,5053216-5053375,5053467-5053622,5053710-5053925,5054025-5054294,5054386-5054589,5054859-5054936	AT1G14690.2 CDS microtubule-associated protein 65-7 [TAIR10] CDS gene_syn F10B6.8, F10B6_8, MAP65-7, microtubule-associated protein 65-7 gene MAP65-7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product microtubule-associated protein 65-7 note microtubule-associated protein 65-7 (MAP65-7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: Microtubule associated protein (MAP65/ASE1) family protein (TAIR:AT2G01910.1); Has 3904 Blast hits to 3381 proteins in 390 species: Archae - 69; Bacteria - 268; Metazoa - 1930; Fungi - 367; Plants - 438; Viruses - 6; Other Eukaryotes - 826 (source: NCBI BLink). protein_id AT1G14690.2p transcript_id AT1G14690.2 protein_id AT1G14690.2p transcript_id AT1G14690.2
At1g14700	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059726-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.1 CDS purple acid phosphatase 3 [TAIR10] CDS gene_syn ATPAP3, F10B6.10, F10B6_10, PAP3, purple acid phosphatase 3 gene PAP3 go_component vacuole|GO:0005773|15539469|IDA go_function acid phosphatase activity|GO:0003993|16244908|ISS go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product purple acid phosphatase 3 note purple acid phosphatase 3 (PAP3); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 8 (TAIR:AT2G01890.1); Has 1143 Blast hits to 1133 proteins in 280 species: Archae - 0; Bacteria - 267; Metazoa - 336; Fungi - 8; Plants - 196; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink). protein_id AT1G14700.1p transcript_id AT1G14700.1 protein_id AT1G14700.1p transcript_id AT1G14700.1
AT1G14700	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059726-5059833,5059930-5060057,5060361-5060489,5060584-5060655	AT1G14700.4 AT1G14700.4 CDS purple acid phosphatase 3
At1g14700	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059732-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.2 CDS purple acid phosphatase 3 [TAIR10] CDS gene_syn ATPAP3, F10B6.10, F10B6_10, PAP3, purple acid phosphatase 3 gene PAP3 go_function acid phosphatase activity|GO:0003993|16244908|ISS go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product purple acid phosphatase 3 note purple acid phosphatase 3 (PAP3); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 8 (TAIR:AT2G01890.1); Has 1092 Blast hits to 1082 proteins in 272 species: Archae - 0; Bacteria - 250; Metazoa - 335; Fungi - 8; Plants - 191; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink). protein_id AT1G14700.2p transcript_id AT1G14700.2 protein_id AT1G14700.2p transcript_id AT1G14700.2
AT1G14700	chr1:005059473	0.0	W/5059473-5059629,5059726-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.3 AT1G14700.3 CDS purple acid phosphatase 3
At1g14710	chr1:005062168	0.0	C/5062168-5062717,5062807-5062961,5063067-5063179,5063252-5063359,5063438-5063555,5063631-5063734,5063823-5063930,5064148-5064697	AT1G14710.1 CDS hydroxyproline-rich glycoprotein family protein [TAIR10] CDS gene_syn F10B6.11, F10B6_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 6006 Blast hits to 3456 proteins in 374 species: Archae - 2; Bacteria - 410; Metazoa - 1957; Fungi - 511; Plants - 1958; Viruses - 385; Other Eukaryotes - 783 (source: NCBI BLink). protein_id AT1G14710.1p transcript_id AT1G14710.1 protein_id AT1G14710.1p transcript_id AT1G14710.1
At1g14710	chr1:005062168	0.0	C/5062168-5062717,5062807-5062961,5063067-5063179,5063252-5063359,5063438-5063555,5063631-5063734,5063823-5063930,5064148-5064697	AT1G14710.2 CDS hydroxyproline-rich glycoprotein family protein [TAIR10] CDS gene_syn F10B6.11, F10B6_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 6006 Blast hits to 3456 proteins in 374 species: Archae - 2; Bacteria - 410; Metazoa - 1957; Fungi - 511; Plants - 1958; Viruses - 385; Other Eukaryotes - 783 (source: NCBI BLink). protein_id AT1G14710.2p transcript_id AT1G14710.2 protein_id AT1G14710.2p transcript_id AT1G14710.2
At1g14720	chr1:005066806	0.0	C/5066806-5067310,5067782-5067990,5068095-5068195,5068283-5068466	AT1G14720.1 CDS xyloglucan endotransglucosylase/hydrolase 28 [TAIR10] CDS gene_syn ATXTH28, ENDOXYLOGLUCAN TRANSFERASE A2, EXGT-A2, F10B6.12, F10B6_12, XTH28, XTR2, XYLOGLUCAN ENDOTRANSGLYCOSYLASE-RELATED PROTEIN, xyloglucan endotransglucosylase/hydrolase 28, xyloglucan endotransglycosylase related 2 gene XTH28 function member of Glycoside Hydrolase Family 16 go_component cell wall|GO:0005618||IEA go_component endomembrane system|GO:0012505||IEA go_component apoplast|GO:0048046||IEA go_process fruit development|GO:0010154|19139039|IMP go_process stamen filament development|GO:0080086|19139039|IMP go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|10557219|ISS go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS product xyloglucan endotransglucosylase/hydrolase 28 note xyloglucan endotransglucosylase/hydrolase 28 (XTH28); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: fruit development, stamen filament development; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: endoxyloglucan transferase A3 (TAIR:AT2G01850.1); Has 2041 Blast hits to 2031 proteins in 289 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 395; Plants - 1341; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). protein_id AT1G14720.1p transcript_id AT1G14720.1 protein_id AT1G14720.1p transcript_id AT1G14720.1
At1g14730	chr1:005073244	0.0	W/5073244-5073408,5073587-5073635,5073986-5074185,5074308-5074568	AT1G14730.1 CDS Cytochrome b561/ferric reductase transmembrane protein family [TAIR10] CDS gene_syn F10B6.13, F10B6_13 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA product Cytochrome b561/ferric reductase transmembrane protein family note Cytochrome b561/ferric reductase transmembrane protein family; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Cytochrome b561/ferric reductase transmembrane protein family (TAIR:AT4G25570.1); Has 599 Blast hits to 596 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 368; Fungi - 6; Plants - 197; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). protein_id AT1G14730.1p transcript_id AT1G14730.1 protein_id AT1G14730.1p transcript_id AT1G14730.1
At1g14740	chr1:005075450	0.0	C/5075450-5075925,5076007-5077732	AT1G14740.1 CDS class I heat shock protein, putative (DUF1423) [TAIR10] CDS gene_syn F10B6.14, F10B6_14 go_component cellular_component|GO:0005575||ND product Protein of unknown function (DUF1423) note Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT3G63500.1); Has 415 Blast hits to 414 proteins in 82 species: Archae - 3; Bacteria - 32; Metazoa - 64; Fungi - 8; Plants - 255; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). protein_id AT1G14740.1p transcript_id AT1G14740.1 protein_id AT1G14740.1p transcript_id AT1G14740.1
AT1G14750	chr1:005079648	0.0	C/5079648-5079842,5079936-5080116,5080205-5080333,5080631-5080797,5081047-5081214,5081404-5082423	AT1G14750.3 AT1G14750.3 CDS Cyclin family protein
At1g14750	chr1:005079674	0.0	C/5079674-5079700,5079798-5079842,5079936-5080116,5080205-5080333,5080631-5080797,5081047-5081214,5081404-5081655,5082160-5082423	AT1G14750.2 CDS Cyclin family protein [TAIR10] CDS gene_syn F10B6.15, F10B6_15, SDS, SOLO DANCERS gene SDS function Encodes a meiotic cyclin-like protein, distinct from all other known Arabidopsis cyclins. It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome. go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_process double-strand break repair via homologous recombination|GO:0000724|19763177|IMP go_process chiasma assembly|GO:0051026|19763177|IMP go_process regulation of cell cycle|GO:0051726||ISS go_function cyclin-dependent protein kinase activity|GO:0004693||ISS product Cyclin family protein note SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: chiasma assembly, regulation of cell cycle, double-strand break repair via homologous recombination; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1); Has 3409 Blast hits to 3403 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 1595; Fungi - 422; Plants - 957; Viruses - 3; Other Eukaryotes - 432 (source: NCBI BLink). protein_id AT1G14750.2p transcript_id AT1G14750.2 protein_id AT1G14750.2p transcript_id AT1G14750.2
At1g14750	chr1:005079674	0.0	C/5079674-5079700,5079798-5079842,5079936-5080116,5080205-5080333,5080631-5080797,5081047-5081214,5081404-5082423	AT1G14750.1 CDS Cyclin family protein [TAIR10] CDS gene_syn F10B6.15, F10B6_15, SDS, SOLO DANCERS gene SDS function Encodes a meiotic cyclin-like protein, distinct from all other known Arabidopsis cyclins. It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome. go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_process double-strand break repair via homologous recombination|GO:0000724|19763177|IMP go_process chiasma assembly|GO:0051026|19763177|IMP go_process regulation of cell cycle|GO:0051726||ISS go_function cyclin-dependent protein kinase activity|GO:0004693||ISS product Cyclin family protein note SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: chiasma assembly, regulation of cell cycle, double-strand break repair via homologous recombination; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1); Has 3541 Blast hits to 3470 proteins in 348 species: Archae - 0; Bacteria - 40; Metazoa - 1630; Fungi - 464; Plants - 953; Viruses - 3; Other Eukaryotes - 451 (source: NCBI BLink). protein_id AT1G14750.1p transcript_id AT1G14750.1 protein_id AT1G14750.1p transcript_id AT1G14750.1
AT1G14750	chr1:005079674	0.0	C/5079674-5079700,5079798-5079842,5079936-5080116,5080208-5080333,5080631-5080797,5081047-5081214,5081404-5081655,5082160-5082423	AT1G14750.4 AT1G14750.4 CDS Cyclin family protein
At1g14755	chr1:005083765	0.0	W/5083765-5083825,5083923-5084098	AT1G14755.1 CDS S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family [TAIR10] CDS function Encodes a defensin-like (DEFL) family protein. go_component endomembrane system|GO:0012505||IEA product S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family note S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14755.1p transcript_id AT1G14755.1 protein_id AT1G14755.1p transcript_id AT1G14755.1
At1g14760	chr1:005084530	0.0	C/5084530-5084655,5084826-5084951,5085049-5085213	AT1G14760.2 CDS KNOX Arabidopsis thaliana meinox [TAIR10] CDS gene_syn F10B6.16, F10B6_16, KNATM, KNOX Arabidopsis thaliana meinox gene KNATM function Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities go_component nucleus|GO:0005634|18398054|IDA go_component cytoplasm|GO:0005737|18398054|IDA go_process leaf proximal/distal pattern formation|GO:0010589|18398054|IMP go_function transcription activator activity|GO:0016563|18398054|IDA product KNOX Arabidopsis thaliana meinox note KNOX Arabidopsis thaliana meinox (KNATM); CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540), KNOX2 (InterPro:IPR005541); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana (TAIR:AT4G08150.1); Has 1449 Blast hits to 1449 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1449; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14760.2p transcript_id AT1G14760.2 protein_id AT1G14760.2p transcript_id AT1G14760.2
At1g14760	chr1:005084530	0.0	C/5084530-5084655,5085049-5085213	AT1G14760.3 CDS KNOX Arabidopsis thaliana meinox [TAIR10] CDS gene_syn F10B6.16, F10B6_16, KNATM, KNOX Arabidopsis thaliana meinox gene KNATM function Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities go_component nucleus|GO:0005634|18398054|IDA go_component cytoplasm|GO:0005737|18398054|IDA go_process leaf proximal/distal pattern formation|GO:0010589|18398054|IMP go_function transcription activator activity|GO:0016563|18398054|IDA product KNOX Arabidopsis thaliana meinox note KNOX Arabidopsis thaliana meinox (KNATM); CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540); Has 13 Blast hits to 13 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14760.3p transcript_id AT1G14760.3 protein_id AT1G14760.3p transcript_id AT1G14760.3
At1g14760	chr1:005084688	0.0	C/5084688-5084951,5085049-5085213	AT1G14760.1 CDS KNOX Arabidopsis thaliana meinox [TAIR10] CDS gene_syn F10B6.16, F10B6_16, KNATM, KNOX Arabidopsis thaliana meinox gene KNATM function Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities go_component nucleus|GO:0005634|18398054|IDA go_component cytoplasm|GO:0005737|18398054|IDA go_process leaf proximal/distal pattern formation|GO:0010589|18398054|IMP go_function transcription activator activity|GO:0016563|18398054|IDA product KNOX Arabidopsis thaliana meinox note KNOX Arabidopsis thaliana meinox (KNATM); CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540); Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14760.1p transcript_id AT1G14760.1 protein_id AT1G14760.1p transcript_id AT1G14760.1
At1g14770	chr1:005086867	0.0	C/5086867-5087706,5087813-5087920,5088022-5088224,5088299-5088437	AT1G14770.1 CDS RING/FYVE/PHD zinc finger superfamily protein [TAIR10] CDS gene_syn F10B6.17, F10B6_17 go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product RING/FYVE/PHD zinc finger superfamily protein note RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G68030.1); Has 95 Blast hits to 84 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 12; Plants - 59; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G14770.1p transcript_id AT1G14770.1 protein_id AT1G14770.1p transcript_id AT1G14770.1
At1g14770	chr1:005086867	0.0	C/5086867-5087706,5087813-5087920,5088022-5088224,5088299-5088437	AT1G14770.2 CDS RING/FYVE/PHD zinc finger superfamily protein [TAIR10] CDS gene_syn F10B6.17, F10B6_17 go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product RING/FYVE/PHD zinc finger superfamily protein note RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G68030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14770.2p transcript_id AT1G14770.2 protein_id AT1G14770.2p transcript_id AT1G14770.2
At1g14780	chr1:005091020	0.0	W/5091020-5091283,5091387-5091631,5092118-5092331,5092456-5092530,5092614-5092797,5092888-5093057,5093142-5093873	AT1G14780.1 CDS MAC/Perforin domain-containing protein [TAIR10] CDS gene_syn F10B6.18, F10B6_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MAC/Perforin domain-containing protein note MAC/Perforin domain-containing protein; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 221 Blast hits to 220 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14780.1p transcript_id AT1G14780.1 protein_id AT1G14780.1p transcript_id AT1G14780.1
At1g14790	chr1:005094317	0.0	C/5094317-5095129,5095210-5095360,5095458-5097817	AT1G14790.1 CDS RNA-dependent RNA polymerase 1 [TAIR10] CDS gene_syn ATRDRP1, F10B6.19, F10B6_19, RDR1, RNA-dependent RNA polymerase 1 gene RDR1 function Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. go_process response to virus|GO:0009615|12650452|IMP go_process response to salicylic acid stimulus|GO:0009751|15024409|IEP go_process posttranscriptional gene silencing|GO:0016441||ISS go_process positive regulation of posttranscriptional gene silencing|GO:0060148|17586651|IMP go_function nucleic acid binding|GO:0003676||ISS go_function RNA-directed RNA polymerase activity|GO:0003968||ISS product RNA-dependent RNA polymerase 1 note RNA-dependent RNA polymerase 1 (RDR1); CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 2 (TAIR:AT4G11130.1); Has 638 Blast hits to 623 proteins in 115 species: Archae - 0; Bacteria - 2; Metazoa - 73; Fungi - 286; Plants - 205; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink). protein_id AT1G14790.1p transcript_id AT1G14790.1 protein_id AT1G14790.1p transcript_id AT1G14790.1
At1g14800	chr1:005099572	0.0	W/5099572-5099751,5099835-5100108,5100188-5100269,5100352-5100419,5100529-5100611,5100734-5100854,5101020-5101245,5102438-5102558	AT1G14800.1 CDS Nucleic acid-binding, OB-fold-like protein [TAIR10] CDS gene_syn F10B6.21, F10B6_21 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Nucleic acid-binding, OB-fold-like protein note Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G35280.1); Has 210 Blast hits to 208 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14800.1p transcript_id AT1G14800.1 protein_id AT1G14800.1p transcript_id AT1G14800.1
At1g14810	chr1:005102684	0.0	C/5102684-5102765,5102847-5103001,5103339-5103440,5103537-5103632,5103728-5103772,5103874-5103960,5104073-5104633	AT1G14810.1 CDS semialdehyde dehydrogenase family protein [TAIR10] CDS gene_syn F10B6.22, F10B6_22 function encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_process cellular amino acid metabolic process|GO:0006520||IEA go_process cellular amino acid biosynthetic process|GO:0008652||IEA go_process methionine biosynthetic process|GO:0009086||IEA go_process threonine biosynthetic process|GO:0009088||IEA go_process oxidation reduction|GO:0055114||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_process cellular amino acid metabolic process|GO:0006520||ISS go_function aspartate-semialdehyde dehydrogenase activity|GO:0004073|11812229|IDA go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|GO:0016620||ISS product semialdehyde dehydrogenase family protein note semialdehyde dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, aspartate-semialdehyde dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, oxidation reduction, threonine biosynthetic process, methionine biosynthetic process, cellular amino acid metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Semialdehyde dehydrogenase, dimerisation domain (InterPro:IPR012280), Semialdehyde dehydrogenase, NAD-binding (InterPro:IPR000534), Aspartate-semialdehyde dehydrogenase, bacterial (InterPro:IPR005986), Aspartate-semialdehyde dehydrogenase (InterPro:IPR012080); Has 10268 Blast hits to 10266 proteins in 2514 species: Archae - 260; Bacteria - 6386; Metazoa - 3; Fungi - 175; Plants - 61; Viruses - 0; Other Eukaryotes - 3383 (source: NCBI BLink). protein_id AT1G14810.1p transcript_id AT1G14810.1 protein_id AT1G14810.1p transcript_id AT1G14810.1
AT1G14810	chr1:005103152	0.0	C/5103152-5103181,5103339-5103440,5103537-5103632,5103728-5103772,5103874-5103960,5104073-5104633	AT1G14810.2 AT1G14810.2 CDS semialdehyde dehydrogenase family protein
At1g14820	chr1:005105237	0.0	C/5105237-5105398,5105487-5105597,5105683-5105800,5105888-5105924,5106163-5106421,5106722-5106793	AT1G14820.3 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn F10B6.40, F10B6_40 go_component cellular_component|GO:0005575||ND go_process transport|GO:0006810||ISS go_function transporter activity|GO:0005215||ISS product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G01630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14820.3p transcript_id AT1G14820.3 protein_id AT1G14820.3p transcript_id AT1G14820.3
At1g14820	chr1:005105237	0.0	C/5105237-5105398,5105487-5105597,5105683-5105800,5105888-5105924,5106163-5106454	AT1G14820.1 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn F10B6.40, F10B6_40 go_component cellular_component|GO:0005575||ND go_process transport|GO:0006810||ISS go_function transporter activity|GO:0005215||ISS product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G01630.1); Has 1699 Blast hits to 1699 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 335; Fungi - 476; Plants - 691; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). protein_id AT1G14820.1p transcript_id AT1G14820.1 protein_id AT1G14820.1p transcript_id AT1G14820.1
At1g14820	chr1:005105237	0.0	C/5105237-5105398,5105487-5105597,5105683-5105800,5105888-5105924,5106163-5106454	AT1G14820.2 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn F10B6.40, F10B6_40 go_component cellular_component|GO:0005575||ND go_process transport|GO:0006810||ISS go_function transporter activity|GO:0005215||ISS product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G01630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G14820.2p transcript_id AT1G14820.2 protein_id AT1G14820.2p transcript_id AT1G14820.2
At1g14830	chr1:005107699	0.0	C/5107699-5107824,5107919-5108058,5108137-5108377,5108471-5108521,5108615-5108840,5109161-5109231,5109317-5109436,5109531-5109725,5109821-5109885,5109977-5110067,5110215-5110276,5110384-5110434,5110636-5110737,5110829-5110936,5111156-5111219,5111339-5111470	AT1G14830.1 CDS DYNAMIN-like 1C [TAIR10] CDS gene_syn ADL1C, ADL5, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DL1C, DRP1C, DYNAMIN RELATED PROTEIN 1C, DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C, F10B6.23, F10B6_23 gene DL1C function Encodes a dynamin-like protein that is involved in mitochondrial morphogenesis and pollen development. Protein is localized as speckles in the cytoplasm, partially co-localizes with mitochondrial markers, cell plate of dividing cells, and the tip of root hairs, root cap cells, and expanding part of trichoblasts. go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_component plasma membrane|GO:0005886|16618929|IDA go_component cell cortex|GO:0005938|18344418|IDA go_component cell plate|GO:0009504|12834397|IDA go_process mitochondrial fission|GO:0000266|14523248|IMP go_process mitochondrion organization|GO:0007005|14523248|IMP go_process pollen maturation|GO:0010152|12834397|IMP go_function GTPase activity|GO:0003924||ISS go_function GTP binding|GO:0005525||ISS product DYNAMIN-like 1C note DYNAMIN-like 1C (DL1C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: mitochondrial fission, pollen maturation, mitochondrion organization; LOCATED IN: cell cortex, plasma membrane, membrane, cell plate; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1E (TAIR:AT3G60190.1); Has 2810 Blast hits to 2715 proteins in 313 species: Archae - 2; Bacteria - 34; Metazoa - 1054; Fungi - 805; Plants - 579; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink). protein_id AT1G14830.1p transcript_id AT1G14830.1 protein_id AT1G14830.1p transcript_id AT1G14830.1
At1g14840	chr1:005112415	0.0	C/5112415-5112454,5112542-5112729,5112825-5113352,5113432-5113503,5113612-5113758,5113863-5114018,5114125-5114295,5114402-5114572,5114654-5114719,5114919-5115004,5115110-5115299	AT1G14840.1 CDS microtubule-associated proteins 70-4 [TAIR10] CDS gene_syn ATMAP70-4, F10B6.24, F10B6_24, MAP70-4, microtubule-associated proteins 70-4 gene MAP70-4 function Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues. go_component plasma membrane|GO:0005886|17317660|IDA go_component microtubule|GO:0005874|15860013|ISS go_process cytoskeleton organization|GO:0007010|15860013|TAS go_function microtubule binding|GO:0008017|15860013|ISS product microtubule-associated proteins 70-4 note microtubule-associated proteins 70-4 (MAP70-4); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule, plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-3 (TAIR:AT2G01750.1); Has 44078 Blast hits to 26830 proteins in 2000 species: Archae - 639; Bacteria - 5780; Metazoa - 22591; Fungi - 3541; Plants - 2515; Viruses - 207; Other Eukaryotes - 8805 (source: NCBI BLink). protein_id AT1G14840.1p transcript_id AT1G14840.1 protein_id AT1G14840.1p transcript_id AT1G14840.1
At1g14840	chr1:005112415	0.0	C/5112415-5112454,5112542-5112729,5112825-5113352,5113432-5113503,5113657-5113758,5113863-5114018,5114125-5114295,5114402-5114572,5114654-5114719,5114919-5115004,5115110-5115299	AT1G14840.2 CDS microtubule-associated proteins 70-4 [TAIR10] CDS gene_syn ATMAP70-4, F10B6.24, F10B6_24, MAP70-4, microtubule-associated proteins 70-4 gene MAP70-4 function Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues. go_component microtubule|GO:0005874|15860013|ISS go_process cytoskeleton organization|GO:0007010|15860013|TAS go_function microtubule binding|GO:0008017|15860013|ISS product microtubule-associated proteins 70-4 note microtubule-associated proteins 70-4 (MAP70-4); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-3 (TAIR:AT2G01750.1). protein_id AT1G14840.2p transcript_id AT1G14840.2 protein_id AT1G14840.2p transcript_id AT1G14840.2
At1g14850	chr1:005116921	0.0	C/5116921-5117029,5117152-5117477,5117564-5117782,5118150-5118507,5118643-5118839,5119100-5119475,5119783-5120030,5120115-5120327,5120429-5122058,5122183-5122445,5122544-5122670,5122776-5122945,5123101-5123259	AT1G14850.1 CDS nucleoporin 155 [TAIR10] CDS gene_syn F10B6.25, F10B6_25, NUP155, nucleoporin 155 gene NUP155 function Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport go_component nucleolus|GO:0005730|15496452|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component nuclear pore|GO:0005643|12034489|ISS go_component plasma membrane|GO:0005886|16618929|IDA go_process nucleocytoplasmic transport|GO:0006913|12034489|ISS go_function nucleocytoplasmic transporter activity|GO:0005487|12034489|ISS product nucleoporin 155 note nucleoporin 155 (NUP155); FUNCTIONS IN: nucleocytoplasmic transporter activity; INVOLVED IN: nucleocytoplasmic transport; LOCATED IN: nucleolus, plasma membrane, chloroplast, nuclear pore; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup155-like (InterPro:IPR004870), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187); Has 459 Blast hits to 396 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 168; Plants - 85; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). protein_id AT1G14850.1p transcript_id AT1G14850.1 protein_id AT1G14850.1p transcript_id AT1G14850.1
At1g14860	chr1:005124993	0.0	W/5124993-5125063,5125138-5125243,5125359-5125442,5125536-5125805	AT1G14860.1 CDS nudix hydrolase homolog 18 [TAIR10] CDS gene_syn F10B6.26, F10B6_26, NUDT18, atnudt18, nudix hydrolase homolog 18 gene NUDT18 go_function hydrolase activity|GO:0016787||IEA go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS product nudix hydrolase homolog 18 note nudix hydrolase homolog 18 (NUDT18); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 17 (TAIR:AT2G01670.1); Has 1011 Blast hits to 1010 proteins in 304 species: Archae - 0; Bacteria - 339; Metazoa - 213; Fungi - 121; Plants - 237; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). protein_id AT1G14860.1p transcript_id AT1G14860.1 protein_id AT1G14860.1p transcript_id AT1G14860.1
At1g14870	chr1:005128591	0.0	C/5128591-5128676,5128790-5129002,5129094-5129165,5129371-5129458	AT1G14870.1 CDS PLANT CADMIUM RESISTANCE 2 [TAIR10] CDS gene_syn F10B6.27, F10B6_27, PCR2, PLANT CADMIUM RESISTANCE 2 gene PCR2 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|16618929|IDA go_process response to oxidative stress|GO:0006979|18614705|IMP go_function molecular_function|GO:0003674||ND product PLANT CADMIUM RESISTANCE 2 note PLANT CADMIUM RESISTANCE 2 (PCR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G35525.1); Has 803 Blast hits to 802 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 115; Plants - 527; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). protein_id AT1G14870.1p transcript_id AT1G14870.1 protein_id AT1G14870.1p transcript_id AT1G14870.1
AT1G14870	chr1:005128734	0.0	C/5128734-5129002,5129094-5129165,5129371-5129458	AT1G14870.2 AT1G14870.2 CDS PLANT CADMIUM RESISTANCE 2
At1g14880	chr1:005132791	0.0	C/5132791-5132876,5132989-5133201,5133302-5133373,5133579-5133663	AT1G14880.1 CDS PLANT CADMIUM RESISTANCE 1 [TAIR10] CDS gene_syn F10B6.29, F10B6_29, PCR1, PLANT CADMIUM RESISTANCE 1 gene PCR1 go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product PLANT CADMIUM RESISTANCE 1 note PLANT CADMIUM RESISTANCE 1 (PCR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLANT CADMIUM RESISTANCE 2 (TAIR:AT1G14870.1); Has 778 Blast hits to 777 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 110; Plants - 511; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). protein_id AT1G14880.1p transcript_id AT1G14880.1 protein_id AT1G14880.1p transcript_id AT1G14880.1
At1g14890	chr1:005137045	0.0	W/5137045-5137704	AT1G14890.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily protein [TAIR10] CDS gene_syn F10B6.30, F10B6_30 go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_process biological_process|GO:0008150||ND go_function pectinesterase inhibitor activity|GO:0046910||ISS product Plant invertase/pectin methylesterase inhibitor superfamily protein note Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT2G01610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G14890.1p transcript_id AT1G14890.1 protein_id AT1G14890.1p transcript_id AT1G14890.1
At1g14900	chr1:005138665	0.0	C/5138665-5139195,5139270-5139353	AT1G14900.1 CDS high mobility group A [TAIR10] CDS gene_syn F10B6.31, F10B6_31, HMGA, high mobility group A gene HMGA function Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. go_process nucleosome assembly|GO:0006334||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nuclear chromatin|GO:0000790|17114349|IDA go_component nucleus|GO:0005634|17114349|IDA go_component nucleus|GO:0005634||ISS go_component cytosol|GO:0005829|17114349|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677|17114349|IDA go_function DNA binding|GO:0003677||ISS product high mobility group A note high mobility group A (HMGA); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, nucleosome assembly; LOCATED IN: cytosol, nuclear chromatin, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), High mobility group, HMG-I/HMG-Y (InterPro:IPR000116), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT3G18035.1); Has 1377 Blast hits to 1228 proteins in 223 species: Archae - 0; Bacteria - 119; Metazoa - 428; Fungi - 179; Plants - 544; Viruses - 9; Other Eukaryotes - 98 (source: NCBI BLink). protein_id AT1G14900.1p transcript_id AT1G14900.1 protein_id AT1G14900.1p transcript_id AT1G14900.1
AT1G14910	chr1:005139928	0.0	C/5139928-5140665,5140801-5140916,5141005-5141083,5141172-5141354,5141445-5141525,5141616-5141696,5141771-5141836,5141927-5141992,5142124-5142174,5142298-5142390,5142476-5142588,5142721-5142859,5143093-5143190,5143288-5143357,5143482-5143571	AT1G14910.2 AT1G14910.2 CDS ENTH/ANTH/VHS superfamily protein
At1g14910	chr1:005139928	0.0	C/5139928-5140665,5140801-5140916,5141005-5141083,5141172-5141354,5141445-5141525,5141616-5141696,5141771-5141836,5141927-5141992,5142124-5142174,5142298-5142390,5142476-5142603,5142721-5142859,5143093-5143190,5143288-5143357,5143482-5143571	AT1G14910.1 CDS ENTH/ANTH/VHS superfamily protein [TAIR10] CDS gene_syn F10B6.32, F10B6_32 go_component mitochondrion|GO:0005739||IEA go_component clathrin coat|GO:0030118||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_process clathrin coat assembly|GO:0048268||IEA go_function phospholipid binding|GO:0005543||IEA go_function phosphatidylinositol binding|GO:0005545||IEA go_function clathrin binding|GO:0030276||IEA go_function binding|GO:0005488||ISS product ENTH/ANTH/VHS superfamily protein note ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: N-terminal protein myristoylation, clathrin coat assembly; LOCATED IN: clathrin coat, mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT2G01600.1); Has 1433 Blast hits to 1265 proteins in 231 species: Archae - 2; Bacteria - 84; Metazoa - 471; Fungi - 269; Plants - 492; Viruses - 2; Other Eukaryotes - 113 (source: NCBI BLink). protein_id AT1G14910.1p transcript_id AT1G14910.1 protein_id AT1G14910.1p transcript_id AT1G14910.1
At1g14920	chr1:005149414	0.0	W/5149414-5151015	AT1G14920.1 CDS GRAS family transcription factor family protein [TAIR10] CDS gene_syn F10B6.34, F10B6_34, GAI, GAI PROTEIN, GIBBERELLIC ACID INSENSITIVE, RESTORATION ON GROWTH ON AMMONIA 2, RGA2 gene GAI function Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. go_component nucleus|GO:0005634|10421366|TAS go_component nucleus|GO:0005634|10713441|ISS go_component nucleus|GO:0005634|12492836|IDA go_process regulation of nitrogen utilization|GO:0006808|9237632|IMP go_process response to salt stress|GO:0009651|16400150|IGI go_process response to ethylene stimulus|GO:0009723|16400150|IGI go_process response to abscisic acid stimulus|GO:0009737|16400150|IGI go_process response to gibberellin stimulus|GO:0009739|17333251|IEP go_process gibberellic acid mediated signaling pathway|GO:0009740|10421366|TAS go_process salicylic acid mediated signaling pathway|GO:0009863|18450451|IGI go_process jasmonic acid mediated signaling pathway|GO:0009867|18450451|IGI go_process negative regulation of gibberellic acid mediated signaling pathway|GO:0009938|11925042|TAS go_process negative regulation of gibberellic acid mediated signaling pathway|GO:0009938|17416730|IMP go_process regulation of seed germination|GO:0010029|17141619|IGI go_process negative regulation of seed germination|GO:0010187|17449805|IGI go_process response to far red light|GO:0010218|17449805|IEP go_process phloem transport|GO:0010233|15773853|IMP go_process hyperosmotic salinity response|GO:0042538|16400150|IGI go_process regulation of oxygen and reactive oxygen species metabolic process|GO:0080010|18450450|IGI go_process regulation of seed dormancy|GO:2000033|17141619|IGI go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10421366|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11487693|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9237632|ISS product GRAS family transcription factor family protein note GIBBERELLIC ACID INSENSITIVE (GAI); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT2G01570.1); Has 2718 Blast hits to 2657 proteins in 311 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14920.1p transcript_id AT1G14920.1 protein_id AT1G14920.1p transcript_id AT1G14920.1
At1g14930	chr1:005152465	0.0	C/5152465-5152745,5152849-5153035	AT1G14930.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn F10B6.35, F10B6_35 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14940.1); Has 428 Blast hits to 400 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 428; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14930.1p transcript_id AT1G14930.1 protein_id AT1G14930.1p transcript_id AT1G14930.1
At1g14940	chr1:005154775	0.0	C/5154775-5155055,5155326-5155512	AT1G14940.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn F10B6.37, F10B6_37 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14930.1); Has 362 Blast hits to 333 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 362; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14940.1p transcript_id AT1G14940.1 protein_id AT1G14940.1p transcript_id AT1G14940.1
At1g14940	chr1:005154775	0.0	C/5154775-5155055,5155374-5155512	AT1G14940.2 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn F10B6.37, F10B6_37 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14930.1). protein_id AT1G14940.2p transcript_id AT1G14940.2 protein_id AT1G14940.2p transcript_id AT1G14940.2
At1g14950	chr1:005157588	0.0	C/5157588-5157868,5157958-5158144	AT1G14950.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn F10B6.38, F10B6_38 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14930.1); Has 414 Blast hits to 387 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 414; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14950.1p transcript_id AT1G14950.1 protein_id AT1G14950.1p transcript_id AT1G14950.1
At1g14960	chr1:005159334	0.0	C/5159334-5159608,5159806-5159992	AT1G14960.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn F10B6.39, F10B6_39 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14950.1); Has 368 Blast hits to 339 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 368; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14960.1p transcript_id AT1G14960.1 protein_id AT1G14960.1p transcript_id AT1G14960.1
AT1G14970	chr1:005162085	0.0	C/5162085-5162235,5162329-5162519,5162596-5162763,5162974-5163141,5163269-5163473,5163606-5163803,5163902-5163990,5164106-5164173,5164278-5164290	AT1G14970.3 AT1G14970.3 CDS O-fucosyltransferase family protein
At1g14970	chr1:005162085	0.0	C/5162085-5162235,5162329-5162519,5162596-5162763,5162974-5163141,5163269-5163473,5163606-5163803,5163902-5163990,5164106-5164173,5164278-5164347,5164537-5164917	AT1G14970.1 CDS O-fucosyltransferase family protein [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product O-fucosyltransferase family protein note O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G01480.1); Has 831 Blast hits to 817 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 831; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14970.1p transcript_id AT1G14970.1 protein_id AT1G14970.1p transcript_id AT1G14970.1
AT1G14970	chr1:005162085	0.0	C/5162085-5162235,5162329-5162519,5162596-5162763,5162974-5163141,5163269-5163473,5163606-5163803,5163902-5163990,5164106-5164173,5164278-5164368	AT1G14970.2 AT1G14970.2 CDS O-fucosyltransferase family protein
At1g14980	chr1:005165930	0.0	C/5165930-5165981,5166324-5166463,5166550-5166654	AT1G14980.1 CDS chaperonin 10 [TAIR10] CDS gene_syn CPN10, MITOCHONDRIAL CHAPERONIN 10, T15D22.2, T15D22_2, chaperonin 10 gene CPN10 function Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs. go_component mitochondrion|GO:0005739|18385124|IDA go_component mitochondrion|GO:0005739|12492832|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrion|GO:0005739|9011092|IDA go_process protein folding|GO:0006457|9011092|IGI go_process response to heat|GO:0009408|9011092|IEP go_function copper ion binding|GO:0005507|20018591|IDA go_function chaperone binding|GO:0051087|9011092|ISS product chaperonin 10 note chaperonin 10 (CPN10); FUNCTIONS IN: copper ion binding, chaperone binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: GroES-like family protein (TAIR:AT1G23100.1); Has 9195 Blast hits to 9085 proteins in 2839 species: Archae - 7; Bacteria - 6160; Metazoa - 328; Fungi - 119; Plants - 343; Viruses - 2; Other Eukaryotes - 2236 (source: NCBI BLink). protein_id AT1G14980.1p transcript_id AT1G14980.1 protein_id AT1G14980.1p transcript_id AT1G14980.1
AT1G14980	chr1:005166236	0.0	C/5166236-5166239,5166324-5166463,5166550-5166654	AT1G14980.2 AT1G14980.2 CDS chaperonin 10
At1g14990	chr1:005167354	0.0	C/5167354-5167404,5167495-5167524,5167586-5167702,5167798-5167879,5168033-5168151	AT1G14990.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T15D22.3, T15D22_3 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. protein_id AT1G14990.2p transcript_id AT1G14990.2 protein_id AT1G14990.2p transcript_id AT1G14990.2
At1g14990	chr1:005167354	0.0	C/5167354-5167404,5167586-5167702,5167798-5167879,5168033-5168151	AT1G14990.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T15D22.3, T15D22_3 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G14990.1p transcript_id AT1G14990.1 protein_id AT1G14990.1p transcript_id AT1G14990.1
At1g15000	chr1:005168613	0.0	W/5168613-5169947	AT1G15000.1 CDS serine carboxypeptidase-like 50 [TAIR10] CDS gene_syn T15D22.4, T15D22_4, scpl50, serine carboxypeptidase-like 50 gene scpl50 go_component vacuole|GO:0005773|15539469|IDA go_process proteolysis|GO:0006508||IEA go_function serine-type carboxypeptidase activity|GO:0004185||IEA go_process proteolysis|GO:0006508||ISS go_function serine-type carboxypeptidase activity|GO:0004185||ISS product serine carboxypeptidase-like 50 note serine carboxypeptidase-like 50 (scpl50); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 47 (TAIR:AT5G22980.1); Has 3616 Blast hits to 3489 proteins in 407 species: Archae - 0; Bacteria - 288; Metazoa - 703; Fungi - 860; Plants - 1378; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink). protein_id AT1G15000.1p transcript_id AT1G15000.1 protein_id AT1G15000.1p transcript_id AT1G15000.1
At1g15002	chr1:005169940	0.0	C/5169940-5170435	AT1G15002.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G15000 product other RNA transcript_id AT1G15002.1
At1g15010	chr1:005171215	0.0	W/5171215-5171643	AT1G15010.1 CDS mediator of RNA polymerase II transcription subunit, putative [TAIR10] CDS gene_syn T15D22.5, T15D22_5 go_process defense response to fungus|GO:0050832|19656045|IEP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15010.1p transcript_id AT1G15010.1 protein_id AT1G15010.1p transcript_id AT1G15010.1
At1g15015	chr1:005172340	0.0	W/5172340-5172822	AT1G15015.1 CDS F-box family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G15015.1p transcript_id AT1G15015.1 protein_id AT1G15015.1p transcript_id AT1G15015.1
At1g15020	chr1:005173246	0.0	C/5173246-5173267,5173441-5173872,5173945-5174091,5174180-5174220,5174315-5174459,5174545-5174621,5174703-5174771,5174867-5174930,5175100-5175281,5175464-5175556,5175639-5175663,5175894-5176105	AT1G15020.1 CDS quiescin-sulfhydryl oxidase 1 [TAIR10] CDS gene_syn ATQSOX1, QSO2, QSOX1, T15D22.7, T15D22_7, quiescin-sulfhydryl oxidase 1 gene QSOX1 function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain. go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_function thiol oxidase activity|GO:0016972||IEA go_process response to cation stress|GO:0043157|17568770|IMP product quiescin-sulfhydryl oxidase 1 note quiescin-sulfhydryl oxidase 1 (QSOX1); FUNCTIONS IN: thiol oxidase activity, zinc ion binding; INVOLVED IN: response to cation stress; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Zinc finger, RING-type (InterPro:IPR001841), Erv1/Alr (InterPro:IPR006863), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: quiescin-sulfhydryl oxidase 2 (TAIR:AT2G01270.1); Has 2363 Blast hits to 1967 proteins in 298 species: Archae - 18; Bacteria - 44; Metazoa - 1234; Fungi - 321; Plants - 442; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). protein_id AT1G15020.1p transcript_id AT1G15020.1 protein_id AT1G15020.1p transcript_id AT1G15020.1
AT1G15020	chr1:005173246	0.0	C/5173246-5173267,5173441-5173872,5173945-5174091,5174180-5174220,5174315-5174459,5174545-5174621,5174703-5174771,5174867-5174930,5175100-5175281,5175464-5175556,5175639-5175663,5175894-5176105	AT1G15020.3 AT1G15020.3 CDS quiescin-sulfhydryl oxidase 1
At1g15020	chr1:005173341	0.0	C/5173341-5173872,5173945-5174091,5174180-5174220,5174315-5174459,5174545-5174621,5174703-5174771,5174867-5174930,5175100-5175281,5175464-5175556,5175639-5175663,5175894-5176105	AT1G15020.2 CDS quiescin-sulfhydryl oxidase 1 [TAIR10] CDS gene_syn ATQSOX1, QSO2, QSOX1, T15D22.7, T15D22_7, quiescin-sulfhydryl oxidase 1 gene QSOX1 function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain. go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_function thiol oxidase activity|GO:0016972||IEA go_process response to cation stress|GO:0043157|17568770|IMP product quiescin-sulfhydryl oxidase 1 note quiescin-sulfhydryl oxidase 1 (QSOX1); FUNCTIONS IN: thiol oxidase activity, zinc ion binding; INVOLVED IN: response to cation stress; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Zinc finger, RING-type (InterPro:IPR001841), Erv1/Alr (InterPro:IPR006863), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: quiescin-sulfhydryl oxidase 2 (TAIR:AT2G01270.1); Has 2372 Blast hits to 1975 proteins in 299 species: Archae - 18; Bacteria - 46; Metazoa - 1235; Fungi - 321; Plants - 448; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). protein_id AT1G15020.2p transcript_id AT1G15020.2 protein_id AT1G15020.2p transcript_id AT1G15020.2
At1g15030	chr1:005177895	0.0	W/5177895-5178095,5178177-5178400,5178512-5178761,5179208-5179293,5179379-5179470,5179624-5179853	AT1G15030.1 CDS hypothetical protein (DUF789) [TAIR10] CDS gene_syn T15D22.8, T15D22_8 function Encodes a Cysteine-rich peptide (CRP) family protein go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF789) note Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT2G01260.1); Has 315 Blast hits to 313 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 311; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G15030.1p transcript_id AT1G15030.1 protein_id AT1G15030.1p transcript_id AT1G15030.1
AT1G15030	chr1:005177895	0.0	W/5177895-5178095,5178177-5178400,5178512-5178761,5179208-5179293,5179379-5179496	AT1G15030.2 AT1G15030.2 CDS hypothetical protein (DUF789)
At1g15040	chr1:005180038	0.0	C/5180038-5180304,5180395-5181315	AT1G15040.1 CDS Class I glutamine amidotransferase-like superfamily protein [TAIR10] CDS gene_syn T15D22.12, T15D22_12 go_process glutamine metabolic process|GO:0006541||IEA go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND product Class I glutamine amidotransferase-like superfamily protein note Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G66860.1); Has 3704 Blast hits to 3700 proteins in 1207 species: Archae - 28; Bacteria - 2948; Metazoa - 3; Fungi - 7; Plants - 53; Viruses - 0; Other Eukaryotes - 665 (source: NCBI BLink). protein_id AT1G15040.1p transcript_id AT1G15040.1 protein_id AT1G15040.1p transcript_id AT1G15040.1
At1g15040	chr1:005180314	0.0	C/5180314-5181315	AT1G15040.2 CDS Class I glutamine amidotransferase-like superfamily protein [TAIR10] CDS gene_syn T15D22.12, T15D22_12 go_process glutamine metabolic process|GO:0006541||IEA go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND product Class I glutamine amidotransferase-like superfamily protein note Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G66860.1); Has 3653 Blast hits to 3649 proteins in 1189 species: Archae - 28; Bacteria - 2899; Metazoa - 3; Fungi - 7; Plants - 51; Viruses - 0; Other Eukaryotes - 665 (source: NCBI BLink). protein_id AT1G15040.2p transcript_id AT1G15040.2 protein_id AT1G15040.2p transcript_id AT1G15040.2
At1g15045	chr1:005181857	0.0	W/5181857-5181964	AT1G15045.1 CDS hypothetical protein [TAIR10] CDS gene_syn T15D22.9, T15D22_9 function hypothetical protein go_component endomembrane system|GO:0012505||IEA product unknown protein note LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G15045.1p transcript_id AT1G15045.1 protein_id AT1G15045.1p transcript_id AT1G15045.1
AT1G15050	chr1:005182256	0.0	C/5182256-5182322,5182396-5182504,5182605-5182745,5182854-5182998	AT1G15050.2 AT1G15050.2 CDS indole-3-acetic acid inducible 34
At1g15050	chr1:005182256	0.0	C/5182256-5182322,5182396-5182504,5182605-5182745,5182854-5183007,5183157-5183243	AT1G15050.1 CDS indole-3-acetic acid inducible 34 [TAIR10] CDS gene_syn IAA34, T15D22.10, T15D22_10, indole-3-acetic acid inducible 34 gene IAA34 function Belongs to auxin inducible gene family. go_component nucleus|GO:0005634||IEA go_process response to auxin stimulus|GO:0009733|12036262|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product indole-3-acetic acid inducible 34 note indole-3-acetic acid inducible 34 (IAA34); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 32 (TAIR:AT2G01200.2); Has 1472 Blast hits to 1472 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1472; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15050.1p transcript_id AT1G15050.1 protein_id AT1G15050.1p transcript_id AT1G15050.1
At1g15060	chr1:005184053	0.0	C/5184053-5184112,5184229-5184329,5184591-5184761,5184963-5185137,5185241-5185341,5185419-5185521,5185609-5186283,5186415-5186492,5186584-5186856	AT1G15060.1 CDS alpha/beta hydrolase family protein [TAIR10] CDS go_component chloroplast|GO:0009507|18431481|IDA product Uncharacterised conserved protein UCP031088, alpha/beta hydrolase note Uncharacterised conserved protein UCP031088, alpha/beta hydrolase; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070 (InterPro:IPR016969), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (TAIR:AT1G73750.1); Has 177 Blast hits to 156 proteins in 44 species: Archae - 2; Bacteria - 72; Metazoa - 2; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G15060.1p transcript_id AT1G15060.1 protein_id AT1G15060.1p transcript_id AT1G15060.1
AT1G15060	chr1:005184053	0.0	C/5184053-5184112,5184229-5184329,5184591-5184761,5184963-5185137,5185241-5185341,5185419-5185521,5185609-5186283,5186415-5186492,5186584-5186856	AT1G15060.3 AT1G15060.3 CDS alpha/beta hydrolase family protein
AT1G15060	chr1:005184955	0.0	C/5184955-5185137,5185241-5185341,5185419-5185521,5185609-5186283,5186415-5186492,5186584-5186856	AT1G15060.2 AT1G15060.2 CDS alpha/beta hydrolase family protein
At1g15080	chr1:005188080	0.0	W/5188080-5188295,5188384-5188471,5188560-5188669,5188748-5188841,5188923-5189111,5189205-5189264,5189361-5189476	AT1G15080.1 CDS lipid phosphate phosphatase 2 [TAIR10] CDS gene_syn ATLPP2, ATPAP2, F9L1.2, F9L1_2, LIPID PHOSPHATE PHOSPHATASE 2, LPP2, PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 gene LPP2 function Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. go_component plasma membrane|GO:0005886|17317660|IDA go_component integral to plasma membrane|GO:0005887|15960620|ISS go_process abscisic acid mediated signaling pathway|GO:0009738|15960620|IGI go_function acid phosphatase activity|GO:0003993|16244908|ISS go_function phosphatidate phosphatase activity|GO:0008195|11278556|IDA go_function phosphatidate phosphatase activity|GO:0008195||ISS product lipid phosphate phosphatase 2 note lipid phosphate phosphatase 2 (LPP2); FUNCTIONS IN: acid phosphatase activity, phosphatidate phosphatase activity; INVOLVED IN: abscisic acid mediated signaling pathway; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.5); Has 2086 Blast hits to 2081 proteins in 377 species: Archae - 13; Bacteria - 320; Metazoa - 928; Fungi - 399; Plants - 199; Viruses - 3; Other Eukaryotes - 224 (source: NCBI BLink). protein_id AT1G15080.1p transcript_id AT1G15080.1 protein_id AT1G15080.1p transcript_id AT1G15080.1
At1g15090	chr1:005189687	0.0	C/5189687-5189760	AT1G15090.1 [TAIR10] tRNA gene_syn 51439.TRNA-ASN-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Asn (anticodon: GTT) transcript_id AT1G15090.1
AT1G15085	chr1:005192219	0.0	W/5192219-5192263,5192355-5192411,5192777-5192854	AT1G15085.1 AT1G15085.1 CDS hypothetical protein
At1g15100	chr1:005193703	0.0	C/5193703-5194170	AT1G15100.1 CDS RING-H2 finger A2A [TAIR10] CDS gene_syn RHA2A, RING-H2 FINGER PROTEIN RHA2A, RING-H2 finger A2A gene RHA2A function Encodes a putative RING-H2 finger protein RHA2a. go_component endomembrane system|GO:0012505||IEA go_process response to salt stress|GO:0009651|19286935|IMP go_process positive regulation of abscisic acid mediated signaling pathway|GO:0009789|19286935|IMP go_process regulation of response to osmotic stress|GO:0047484|19286935|IMP go_function ubiquitin-protein ligase activity|GO:0004842|19286935|IDA go_function zinc ion binding|GO:0008270||ISS product RING-H2 finger A2A note RING-H2 finger A2A (RHA2A); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: response to salt stress, positive regulation of abscisic acid mediated signaling pathway, regulation of response to osmotic stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger protein 2B (TAIR:AT2G01150.1); Has 8620 Blast hits to 8597 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 2194; Fungi - 672; Plants - 4576; Viruses - 12; Other Eukaryotes - 1166 (source: NCBI BLink). protein_id AT1G15100.1p transcript_id AT1G15100.1 protein_id AT1G15100.1p transcript_id AT1G15100.1
At1g15110	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201681,5201781-5201908	AT1G15110.1 CDS phosphatidyl serine synthase family protein [TAIR10] CDS gene_syn F9L1.4, F9L1_4 go_process phosphatidylserine biosynthetic process|GO:0006659||IEA go_component cellular_component|GO:0005575||ND go_process phosphatidylserine biosynthetic process|GO:0006659||ISS go_function CDP-diacylglycerol-serine O-phosphatidyltransferase activity|GO:0003882||ISS product phosphatidyl serine synthase family protein note phosphatidyl serine synthase family protein; FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity; INVOLVED IN: phosphatidylserine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277); Has 329 Blast hits to 325 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 10; Plants - 65; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). protein_id AT1G15110.1p transcript_id AT1G15110.1 protein_id AT1G15110.1p transcript_id AT1G15110.1
AT1G15110	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201681,5201781-5201908	AT1G15110.3 AT1G15110.3 CDS phosphatidyl serine synthase family protein
AT1G15110	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201681,5201781-5201908	AT1G15110.4 AT1G15110.4 CDS phosphatidyl serine synthase family protein
At1g15110	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201685,5201781-5201988	AT1G15110.2 CDS phosphatidyl serine synthase family protein [TAIR10] CDS gene_syn F9L1.4, F9L1_4 go_process phosphatidylserine biosynthetic process|GO:0006659||IEA go_component cellular_component|GO:0005575||ND go_process phosphatidylserine biosynthetic process|GO:0006659||ISS go_function CDP-diacylglycerol-serine O-phosphatidyltransferase activity|GO:0003882||ISS product phosphatidyl serine synthase family protein note phosphatidyl serine synthase family protein; FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity; INVOLVED IN: phosphatidylserine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277); Has 335 Blast hits to 331 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 10; Plants - 65; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). protein_id AT1G15110.2p transcript_id AT1G15110.2 protein_id AT1G15110.2p transcript_id AT1G15110.2
At1g15120	chr1:005202648	0.0	W/5202648-5202772,5202871-5202920,5203065-5203092,5203484-5203568,5203683-5203772,5203828-5203950	AT1G15120.2 CDS Ubiquinol-cytochrome C reductase hinge protein [TAIR10] CDS gene_syn F9L1.5, F9L1_5 go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA go_component mitochondrial respiratory chain complex III|GO:0005750||ISS go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS product Ubiquinol-cytochrome C reductase hinge protein note Ubiquinol-cytochrome C reductase hinge protein; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422); BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase hinge protein (TAIR:AT2G01090.2); Has 136 Blast hits to 136 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). protein_id AT1G15120.2p transcript_id AT1G15120.2 protein_id AT1G15120.2p transcript_id AT1G15120.2
At1g15120	chr1:005203091	0.0	W/5203091-5203092,5203484-5203568,5203683-5203772,5203865-5203897	AT1G15120.1 CDS Ubiquinol-cytochrome C reductase hinge protein [TAIR10] CDS gene_syn F9L1.5, F9L1_5 go_component mitochondrion|GO:0005739|15276431|IDA go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA go_component mitochondrial respiratory chain complex III|GO:0005750||ISS go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS product Ubiquinol-cytochrome C reductase hinge protein note Ubiquinol-cytochrome C reductase hinge protein; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422); BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase hinge protein (TAIR:AT2G01090.2); Has 410 Blast hits to 410 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 210; Fungi - 51; Plants - 87; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). protein_id AT1G15120.1p transcript_id AT1G15120.1 protein_id AT1G15120.1p transcript_id AT1G15120.1
At1g15125	chr1:005204625	0.0	W/5204625-5204675,5204758-5205049,5205126-5205490,5205565-5205912	AT1G15125.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS go_function methyltransferase activity|GO:0008168||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G68040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G15125.1p transcript_id AT1G15125.1 protein_id AT1G15125.1p transcript_id AT1G15125.1
AT1G15125	chr1:005204625	0.0	W/5204625-5204675,5204758-5205049,5205126-5205529	AT1G15125.2 AT1G15125.2 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
At1g15130	chr1:005206217	0.0	C/5206217-5206687,5206851-5206954,5207144-5207192,5207379-5207519,5207618-5207686,5207781-5207870,5208084-5209034,5209183-5209848	AT1G15130.1 CDS Endosomal targeting BRO1-like domain-containing protein [TAIR10] CDS gene_syn F9L1.7, F9L1_7 product Endosomal targeting BRO1-like domain-containing protein note Endosomal targeting BRO1-like domain-containing protein; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); Has 26948 Blast hits to 15985 proteins in 1003 species: Archae - 32; Bacteria - 2662; Metazoa - 9770; Fungi - 4642; Plants - 6039; Viruses - 612; Other Eukaryotes - 3191 (source: NCBI BLink). protein_id AT1G15130.1p transcript_id AT1G15130.1 protein_id AT1G15130.1p transcript_id AT1G15130.1
At1g15140	chr1:005210403	0.0	C/5210403-5210465,5210549-5210629,5210714-5210809,5210972-5211071,5211590-5212137	AT1G15140.1 CDS FAD/NAD(P)-binding oxidoreductase [TAIR10] CDS gene_syn F9L1.8, F9L1_8 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process oxidation reduction|GO:0055114||IEA go_function copper ion binding|GO:0005507|20018591|IDA go_function oxidoreductase activity|GO:0016491||ISS product FAD/NAD(P)-binding oxidoreductase note FAD/NAD(P)-binding oxidoreductase; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 6042 Blast hits to 6042 proteins in 1578 species: Archae - 81; Bacteria - 4817; Metazoa - 13; Fungi - 213; Plants - 309; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink). protein_id AT1G15140.1p transcript_id AT1G15140.1 protein_id AT1G15140.1p transcript_id AT1G15140.1
At1g15140	chr1:005210642	0.0	C/5210642-5210809,5210972-5211071,5211590-5212137	AT1G15140.2 CDS FAD/NAD(P)-binding oxidoreductase [TAIR10] CDS gene_syn F9L1.8, F9L1_8 go_component chloroplast|GO:0009507|18431481|IDA go_component thylakoid|GO:0009579|16648217|IDA go_process oxidation reduction|GO:0055114||IEA go_function copper ion binding|GO:0005507|20018591|IDA go_function oxidoreductase activity|GO:0016491||ISS product FAD/NAD(P)-binding oxidoreductase note FAD/NAD(P)-binding oxidoreductase; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15140.2p transcript_id AT1G15140.2 protein_id AT1G15140.2p transcript_id AT1G15140.2
At1g15140	chr1:005210642	0.0	C/5210642-5210809,5210972-5211071,5211590-5212137	AT1G15140.3 CDS FAD/NAD(P)-binding oxidoreductase [TAIR10] CDS gene_syn F9L1.8, F9L1_8 go_component chloroplast|GO:0009507|18431481|IDA go_component thylakoid|GO:0009579|16648217|IDA go_process oxidation reduction|GO:0055114||IEA go_function copper ion binding|GO:0005507|20018591|IDA go_function oxidoreductase activity|GO:0016491||ISS product FAD/NAD(P)-binding oxidoreductase note FAD/NAD(P)-binding oxidoreductase; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15140.3p transcript_id AT1G15140.3 protein_id AT1G15140.3p transcript_id AT1G15140.3
At1g15150	chr1:005212674	0.0	W/5212674-5212931,5213047-5213591,5213675-5213761,5213841-5213897,5213989-5214227,5214357-5214562,5214652-5214723	AT1G15150.1 CDS MATE efflux family protein [TAIR10] CDS gene_syn F9L1.9, F9L1_9 go_component membrane|GO:0016020||IEA go_process drug transmembrane transport|GO:0006855||IEA go_process transmembrane transport|GO:0055085||IEA go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020||ISS go_function transporter activity|GO:0005215||ISS go_function antiporter activity|GO:0015297||ISS product MATE efflux family protein note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15160.1); Has 8066 Blast hits to 8001 proteins in 1866 species: Archae - 126; Bacteria - 5341; Metazoa - 149; Fungi - 332; Plants - 1319; Viruses - 0; Other Eukaryotes - 799 (source: NCBI BLink). protein_id AT1G15150.1p transcript_id AT1G15150.1 protein_id AT1G15150.1p transcript_id AT1G15150.1
AT1G15150	chr1:005213137	0.0	W/5213137-5213591,5213675-5213761,5213841-5213897,5213989-5214227,5214357-5214562,5214652-5214723	AT1G15150.2 AT1G15150.2 CDS MATE efflux family protein
At1g15160	chr1:005215475	0.0	W/5215475-5215732,5215848-5216392,5216472-5216558,5216638-5216694,5216798-5217036,5217170-5217375,5217474-5217545	AT1G15160.1 CDS MATE efflux family protein [TAIR10] CDS gene_syn F9L1.10, F9L1_10 go_component membrane|GO:0016020||IEA go_process drug transmembrane transport|GO:0006855||IEA go_process transmembrane transport|GO:0055085||IEA go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020||ISS go_function transporter activity|GO:0005215||ISS go_function antiporter activity|GO:0015297||ISS product MATE efflux family protein note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15150.1); Has 7342 Blast hits to 7269 proteins in 1785 species: Archae - 88; Bacteria - 4667; Metazoa - 149; Fungi - 332; Plants - 1329; Viruses - 0; Other Eukaryotes - 777 (source: NCBI BLink). protein_id AT1G15160.1p transcript_id AT1G15160.1 protein_id AT1G15160.1p transcript_id AT1G15160.1
At1g15165	chr1:005217719	0.0	C/5217719-5217980,5218117-5218259,5218521-5218627,5218743-5218911,5219298-5219328,5219552-5219711,5219950-5220067	AT1G15165.1 CDS RING/FYVE/PHD zinc finger superfamily protein [TAIR10] CDS go_component ubiquitin ligase complex|GO:0000151||IEA go_process protein ubiquitination|GO:0016567||IEA go_function ubiquitin-protein ligase activity|GO:0004842||IEA product RING/FYVE/PHD zinc finger superfamily protein note RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 427 Blast hits to 408 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G15165.1p transcript_id AT1G15165.1 protein_id AT1G15165.1p transcript_id AT1G15165.1
At1g15170	chr1:005220690	0.0	W/5220690-5220956,5221043-5221587,5221659-5221745,5221827-5221883,5221996-5222234,5222411-5222616,5222712-5222756	AT1G15170.1 CDS MATE efflux family protein [TAIR10] CDS gene_syn F9L1.11, F9L1_11 go_component chloroplast|GO:0009507|18431481|IDA go_process drug transmembrane transport|GO:0006855||IEA go_process transmembrane transport|GO:0055085||IEA go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020||ISS go_function transporter activity|GO:0005215||ISS go_function antiporter activity|GO:0015297||ISS product MATE efflux family protein note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15180.1); Has 8903 Blast hits to 8835 proteins in 2013 species: Archae - 124; Bacteria - 6072; Metazoa - 149; Fungi - 330; Plants - 1330; Viruses - 0; Other Eukaryotes - 898 (source: NCBI BLink). protein_id AT1G15170.1p transcript_id AT1G15170.1 protein_id AT1G15170.1p transcript_id AT1G15170.1
AT1G15170	chr1:005221133	0.0	W/5221133-5221587,5221659-5221745,5221827-5221883,5221996-5222234,5222411-5222616,5222712-5222756	AT1G15170.2 AT1G15170.2 CDS MATE efflux family protein
At1g15175	chr1:005222913	0.0	C/5222913-5223652,5224033-5224121	AT1G15175.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G15170 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G15175.1
At1g15180	chr1:005224452	0.0	W/5224452-5224721,5224826-5225370,5225448-5225534,5225614-5225670,5225766-5226004,5226186-5226391,5226487-5226531	AT1G15180.1 CDS MATE efflux family protein [TAIR10] CDS gene_syn F9L1.12, F9L1_12 go_component membrane|GO:0016020||IEA go_process drug transmembrane transport|GO:0006855||IEA go_process transmembrane transport|GO:0055085||IEA go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020||ISS go_function transporter activity|GO:0005215||ISS go_function antiporter activity|GO:0015297||ISS product MATE efflux family protein note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 7522 Blast hits to 7471 proteins in 1793 species: Archae - 118; Bacteria - 4822; Metazoa - 149; Fungi - 328; Plants - 1330; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink). protein_id AT1G15180.1p transcript_id AT1G15180.1 protein_id AT1G15180.1p transcript_id AT1G15180.1
At1g15180	chr1:005224916	0.0	W/5224916-5225370,5225448-5225534,5225614-5225670,5225766-5226391,5226487-5226494	AT1G15180.2 CDS MATE efflux family protein [TAIR10] CDS gene_syn F9L1.12, F9L1_12 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process drug transmembrane transport|GO:0006855||IEA go_process transmembrane transport|GO:0055085||IEA go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020||ISS go_function transporter activity|GO:0005215||ISS go_function antiporter activity|GO:0015297||ISS product MATE efflux family protein note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G15180.2p transcript_id AT1G15180.2 protein_id AT1G15180.2p transcript_id AT1G15180.2
At1g15190	chr1:005227275	0.0	W/5227275-5228021	AT1G15190.1 CDS Fasciclin-like arabinogalactan family protein [TAIR10] CDS gene_syn F9L1.13, F9L1_13 go_component endomembrane system|GO:0012505||IEA go_function molecular_function|GO:0003674||ND product Fasciclin-like arabinogalactan family protein note Fasciclin-like arabinogalactan family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); Has 106 Blast hits to 85 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15190.1p transcript_id AT1G15190.1 protein_id AT1G15190.1p transcript_id AT1G15190.1
At1g15200	chr1:005228477	0.0	C/5228477-5228566,5228651-5228881,5228967-5229051,5229128-5229268,5229346-5229446,5229546-5229629,5229979-5230050,5230172-5230288,5230374-5230541,5230623-5230688,5230765-5230860,5230940-5231017	AT1G15200.4 CDS protein-protein interaction regulator family protein [TAIR10] CDS gene_syn F9L1.14, F9L1_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product protein-protein interaction regulator family protein note protein-protein interaction regulator family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786). protein_id AT1G15200.4p transcript_id AT1G15200.4 protein_id AT1G15200.4p transcript_id AT1G15200.4
At1g15200	chr1:005228477	0.0	C/5228477-5228881,5228967-5229051,5229128-5229268,5229346-5229446,5229546-5229629,5229979-5230050,5230172-5230288,5230374-5230541,5230623-5230688,5230765-5230860,5230940-5231017	AT1G15200.3 CDS protein-protein interaction regulator family protein [TAIR10] CDS gene_syn F9L1.14, F9L1_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product protein-protein interaction regulator family protein note protein-protein interaction regulator family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786). protein_id AT1G15200.3p transcript_id AT1G15200.3 protein_id AT1G15200.3p transcript_id AT1G15200.3
At1g15200	chr1:005228477	0.0	C/5228477-5228881,5228967-5229051,5229247-5229261,5229346-5229446,5229546-5229629,5229979-5230050,5230172-5230288,5230374-5230541,5230623-5230688,5230765-5230860,5230940-5231017	AT1G15200.2 CDS protein-protein interaction regulator family protein [TAIR10] CDS gene_syn F9L1.14, F9L1_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product protein-protein interaction regulator family protein note protein-protein interaction regulator family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786). protein_id AT1G15200.2p transcript_id AT1G15200.2 protein_id AT1G15200.2p transcript_id AT1G15200.2
At1g15200	chr1:005228477	0.0	C/5228477-5228881,5228967-5229051,5229346-5229446,5229546-5229629,5229979-5230050,5230172-5230288,5230374-5230541,5230623-5230688,5230765-5230860,5230940-5231017	AT1G15200.1 CDS protein-protein interaction regulator family protein [TAIR10] CDS gene_syn F9L1.14, F9L1_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product protein-protein interaction regulator family protein note protein-protein interaction regulator family protein; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786); Has 5330 Blast hits to 4034 proteins in 383 species: Archae - 10; Bacteria - 289; Metazoa - 2328; Fungi - 484; Plants - 229; Viruses - 50; Other Eukaryotes - 1940 (source: NCBI BLink). protein_id AT1G15200.1p transcript_id AT1G15200.1 protein_id AT1G15200.1p transcript_id AT1G15200.1
At1g15210	chr1:005231552	0.0	C/5231552-5232479,5232568-5233409,5233493-5233599,5233690-5233761,5233834-5233987,5234080-5234949,5235039-5235431,5235527-5235657,5235742-5236573	AT1G15210.1 CDS pleiotropic drug resistance 7 [TAIR10] CDS gene_syn ATPDR7, F9L1.15, F9L1_15, PDR7, PLEIOTROPIC DRUG RESISTANCE 7, pleiotropic drug resistance 7 gene PDR7 go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component membrane|GO:0016020|17432890|IDA go_component plasma membrane|GO:0005886|16618929|IDA go_process drug transmembrane transport|GO:0006855|16506311|ISS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product pleiotropic drug resistance 7 note pleiotropic drug resistance 7 (PDR7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT1G59870.1); Has 383488 Blast hits to 290790 proteins in 4017 species: Archae - 7218; Bacteria - 309544; Metazoa - 9443; Fungi - 7090; Plants - 6323; Viruses - 4; Other Eukaryotes - 43866 (source: NCBI BLink). protein_id AT1G15210.1p transcript_id AT1G15210.1 protein_id AT1G15210.1p transcript_id AT1G15210.1
At1g15215	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239715-5239741	AT1G15215.3 CDS SAWADEE HOMEODOMAIN protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15215.3p transcript_id AT1G15215.3 protein_id AT1G15215.3p transcript_id AT1G15215.3
At1g15215	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239726-5239770	AT1G15215.2 CDS SAWADEE HOMEODOMAIN protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15215.2p transcript_id AT1G15215.2 protein_id AT1G15215.2p transcript_id AT1G15215.2
AT1G15215	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239713	AT1G15215.4 AT1G15215.4 CDS SAWADEE HOMEODOMAIN protein
At1g15215	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239257	AT1G15215.1 CDS SAWADEE HOMEODOMAIN protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15215.1p transcript_id AT1G15215.1 protein_id AT1G15215.1p transcript_id AT1G15215.1
AT1G15215	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239257	AT1G15215.5 AT1G15215.5 CDS SAWADEE HOMEODOMAIN protein
At1g15220	chr1:005240471	0.0	C/5240471-5240674,5240755-5240886,5240974-5241117	AT1G15220.1 CDS cytochrome c biogenesis protein family [TAIR10] CDS gene_syn ATCCMH, CCMH, F9L1.17, F9L1_17 gene CCMH function Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2. go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrial inner membrane|GO:0005743|16236729|IDA go_component protein complex|GO:0043234|16236729|IDA go_process embryo development|GO:0009790|16236729|IMP go_process cytochrome complex assembly|GO:0017004||ISS go_function oxidoreductase activity|GO:0016491|16236729|IDA product cytochrome c biogenesis protein family note CCMH; CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616); Has 3193 Blast hits to 3193 proteins in 721 species: Archae - 0; Bacteria - 1884; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink). protein_id AT1G15220.1p transcript_id AT1G15220.1 protein_id AT1G15220.1p transcript_id AT1G15220.1
At1g15220	chr1:005240471	0.0	C/5240471-5240674,5240755-5240886,5240974-5241117	AT1G15220.2 CDS cytochrome c biogenesis protein family [TAIR10] CDS gene_syn ATCCMH, CCMH, F9L1.17, F9L1_17 gene CCMH function Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2. go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrial inner membrane|GO:0005743|16236729|IDA go_component protein complex|GO:0043234|16236729|IDA go_process embryo development|GO:0009790|16236729|IMP go_process cytochrome complex assembly|GO:0017004||ISS go_function oxidoreductase activity|GO:0016491|16236729|IDA product cytochrome c biogenesis protein family note CCMH; CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15220.2p transcript_id AT1G15220.2 protein_id AT1G15220.2p transcript_id AT1G15220.2
At1g15230	chr1:005242729	0.0	C/5242729-5243196	AT1G15230.1 CDS hypothetical protein [TAIR10] CDS gene_syn F9L1.18, F9L1_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15230.1p transcript_id AT1G15230.1 protein_id AT1G15230.1p transcript_id AT1G15230.1
At1g15240	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246468,5246929-5246997,5247073-5247118,5247198-5247487,5247584-5247663,5247765-5247900,5248075-5248201,5248302-5248384,5248467-5248604	AT1G15240.2 CDS phox (PX) domain-containing protein [TAIR10] CDS gene_syn F9L1.19, F9L1_19 go_process signal transduction|GO:0007165|15358268|ISS go_process intracellular signaling pathway|GO:0023034||ISS go_function phosphoinositide binding|GO:0035091|15358268|ISS product Phox-associated domain;Phox-like;Sorting nexin, C-terminal note Phox-associated domain;Phox-like;Sorting nexin, C-terminal; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT2G15900.1); Has 944 Blast hits to 779 proteins in 177 species: Archae - 0; Bacteria - 4; Metazoa - 546; Fungi - 164; Plants - 152; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). protein_id AT1G15240.2p transcript_id AT1G15240.2 protein_id AT1G15240.2p transcript_id AT1G15240.2
At1g15240	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246468,5246929-5246997,5247073-5247118,5247198-5247487,5247584-5247663,5247765-5247900,5248075-5248201,5248302-5248498	AT1G15240.3 CDS phox (PX) domain-containing protein [TAIR10] CDS gene_syn F9L1.19, F9L1_19 go_process signal transduction|GO:0007165|15358268|ISS go_process intracellular signaling pathway|GO:0023034||ISS go_function phosphoinositide binding|GO:0035091|15358268|ISS product Phox-associated domain;Phox-like;Sorting nexin, C-terminal note Phox-associated domain;Phox-like;Sorting nexin, C-terminal; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT2G15900.1). protein_id AT1G15240.3p transcript_id AT1G15240.3 protein_id AT1G15240.3p transcript_id AT1G15240.3
At1g15240	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246495	AT1G15240.1 CDS phox (PX) domain-containing protein [TAIR10] CDS gene_syn F9L1.19, F9L1_19 go_process signal transduction|GO:0007165|15358268|ISS go_process intracellular signaling pathway|GO:0023034||ISS go_function phosphoinositide binding|GO:0035091|15358268|ISS product Phox-associated domain;Phox-like;Sorting nexin, C-terminal note Phox-associated domain;Phox-like;Sorting nexin, C-terminal; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT2G15900.1); Has 583 Blast hits to 560 proteins in 162 species: Archae - 0; Bacteria - 8; Metazoa - 268; Fungi - 113; Plants - 135; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). protein_id AT1G15240.1p transcript_id AT1G15240.1 protein_id AT1G15240.1p transcript_id AT1G15240.1
AT1G15240	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246495	AT1G15240.4 AT1G15240.4 CDS phox (PX) domain-containing protein
AT1G15240	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246495	AT1G15240.5 AT1G15240.5 CDS phox (PX) domain-containing protein
At1g15250	chr1:005248825	0.0	C/5248825-5248871,5248961-5249062,5249169-5249304,5249379-5249381	AT1G15250.1 CDS Zinc-binding ribosomal protein family protein [TAIR10] CDS gene_syn F9L1.46, F9L1_46 go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_process ribosome biogenesis|GO:0042254||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Zinc-binding ribosomal protein family protein note Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G16080.1); Has 993 Blast hits to 993 proteins in 346 species: Archae - 293; Bacteria - 0; Metazoa - 305; Fungi - 141; Plants - 122; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink). protein_id AT1G15250.1p transcript_id AT1G15250.1 protein_id AT1G15250.1p transcript_id AT1G15250.1
AT1G15250	chr1:005248825	0.0	C/5248825-5248871,5248961-5249062,5249169-5249304,5249379-5249381	AT1G15250.2 AT1G15250.2 CDS Zinc-binding ribosomal protein family protein
At1g15260	chr1:005249834	0.0	W/5249834-5250370	AT1G15260.1 CDS LOW protein: ATP-dependent RNA helicase-like protein, putative [TAIR10] CDS gene_syn F9L1.20, F9L1_20 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15260.1p transcript_id AT1G15260.1 protein_id AT1G15260.1p transcript_id AT1G15260.1
At1g15270	chr1:005250833	0.0	C/5250833-5250913,5251450-5251491,5251845-5251900,5252005-5252020	AT1G15270.1 CDS Translation machinery associated TMA7 [TAIR10] CDS gene_syn F9L1.21, F9L1_21 go_component plasma membrane|GO:0005886|17644812|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Translation machinery associated TMA7 note Translation machinery associated TMA7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: Translation machinery associated TMA7 (TAIR:AT3G16040.1); Has 377 Blast hits to 377 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 86; Plants - 64; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). protein_id AT1G15270.1p transcript_id AT1G15270.1 protein_id AT1G15270.1p transcript_id AT1G15270.1
At1g15280	chr1:005252538	0.0	W/5252538-5252935,5253288-5253387,5253546-5253751,5253831-5254525,5254734-5254836,5255182-5255292,5255470-5255525,5255840-5255900,5256187-5256214	AT1G15280.2 CDS CASC3/Barentsz eIF4AIII binding [TAIR10] CDS gene_syn F9L1.22, F9L1_22 go_component cytosol|GO:0005829|18433157|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product CASC3/Barentsz eIF4AIII binding note CASC3/Barentsz eIF4AIII binding; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2); Has 4051 Blast hits to 2285 proteins in 311 species: Archae - 2; Bacteria - 232; Metazoa - 1228; Fungi - 302; Plants - 228; Viruses - 67; Other Eukaryotes - 1992 (source: NCBI BLink). protein_id AT1G15280.2p transcript_id AT1G15280.2 protein_id AT1G15280.2p transcript_id AT1G15280.2
At1g15280	chr1:005252538	0.0	W/5252538-5252935,5253288-5253387,5253549-5253751,5253831-5254525,5254734-5254836,5255182-5255292,5255470-5255525,5255840-5255900,5256187-5256214	AT1G15280.1 CDS CASC3/Barentsz eIF4AIII binding [TAIR10] CDS gene_syn F9L1.22, F9L1_22 go_component cytosol|GO:0005829|18433157|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product CASC3/Barentsz eIF4AIII binding note CASC3/Barentsz eIF4AIII binding; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2); Has 4070 Blast hits to 2291 proteins in 306 species: Archae - 2; Bacteria - 223; Metazoa - 1249; Fungi - 308; Plants - 219; Viruses - 71; Other Eukaryotes - 1998 (source: NCBI BLink). protein_id AT1G15280.1p transcript_id AT1G15280.1 protein_id AT1G15280.1p transcript_id AT1G15280.1
At1g15290	chr1:005257327	0.0	C/5257327-5258784,5259090-5259171,5259253-5259365,5259498-5259629,5259707-5259890,5260077-5260210,5260358-5260462,5260549-5260650,5260786-5260878,5260949-5261266,5261435-5261536,5261623-5261685,5261815-5262301,5262580-5262734,5262945-5263466,5263555-5263596,5263688-5263884,5263968-5264198,5264420-5264492,5264581-5264814	AT1G15290.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F9L1.23, F9L1_23 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G15290.1p transcript_id AT1G15290.1 protein_id AT1G15290.1p transcript_id AT1G15290.1
AT1G15290	chr1:005258091	0.0	C/5258091-5258137,5258208-5258784,5259090-5259171,5259253-5259365,5259498-5259629,5259707-5259890,5260077-5260210,5260358-5260462,5260549-5260650,5260786-5260878,5260949-5261266,5261435-5261536,5261623-5261685,5261815-5262301,5262580-5262734,5262945-5263466,5263555-5263596,5263688-5263884,5263968-5264198,5264420-5264492,5264581-5264814	AT1G15290.2 AT1G15290.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g15300	chr1:005265828	0.0	C/5265828-5268227	AT1G15300.1 CDS zinc finger BED domain DAYSLEEPER-like protein [TAIR10] mRNA
AT1G15300	chr1:005265828	0.0	C/5265828-5268227	AT1G15300.2 AT1G15300.2 CDS zinc finger BED domain DAYSLEEPER-like protein
At1g15310	chr1:005269173	0.0	C/5269173-5269456,5269534-5269648,5269723-5269877,5269993-5270093,5270206-5270354,5270436-5270586,5271282-5271435,5271532-5271631,5271717-5271947	AT1G15310.1 CDS signal recognition particle 54 kDa subunit [TAIR10] CDS gene_syn ATHSRP54A, F9L1.25, F9L1_25, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT, SRP54-1, signal recognition particle 54 kDa subunit gene ATHSRP54A function 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA go_function nucleotide binding|GO:0000166||IEA go_function GTP binding|GO:0005525||IEA go_function 7S RNA binding|GO:0008312||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_component cytoplasm|GO:0005737|7824644|ISS go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786|8292790|ISS go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS go_process SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|GO:0006617||ISS go_function mRNA binding|GO:0003729||ISS go_function GTP binding|GO:0005525||ISS go_function 7S RNA binding|GO:0008312||ISS product signal recognition particle 54 kDa subunit note signal recognition particle 54 kDa subunit (ATHSRP54A); FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, endoplasmic reticulum targeting, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Signal recognition particle, SRP54 subunit (InterPro:IPR006325); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT1G48900.1); Has 17558 Blast hits to 17547 proteins in 2928 species: Archae - 474; Bacteria - 10612; Metazoa - 362; Fungi - 294; Plants - 285; Viruses - 1; Other Eukaryotes - 5530 (source: NCBI BLink). protein_id AT1G15310.1p transcript_id AT1G15310.1 protein_id AT1G15310.1p transcript_id AT1G15310.1
At1g15320	chr1:005272468	0.0	C/5272468-5272645,5272807-5273335,5273483-5273619,5274004-5274029	AT1G15320.2 CDS seed dormancy control protein [TAIR10] CDS gene_syn F9L1.26, F9L1_26 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G15320.2p transcript_id AT1G15320.2 protein_id AT1G15320.2p transcript_id AT1G15320.2
At1g15320	chr1:005272468	0.0	C/5272468-5272645,5272807-5273335,5273483-5273699	AT1G15320.1 CDS seed dormancy control protein [TAIR10] CDS gene_syn F9L1.26, F9L1_26 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 62 Blast hits to 62 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15320.1p transcript_id AT1G15320.1 protein_id AT1G15320.1p transcript_id AT1G15320.1
At1g15330	chr1:005274368	0.0	W/5274368-5275135,5275209-5275499	AT1G15330.1 CDS Cystathionine beta-synthase (CBS) protein [TAIR10] CDS gene_syn F9L1.27, F9L1_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Cystathionine beta-synthase (CBS) protein note Cystathionine beta-synthase (CBS) protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT1G80090.1); Has 526 Blast hits to 526 proteins in 132 species: Archae - 6; Bacteria - 4; Metazoa - 257; Fungi - 91; Plants - 124; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G15330.1p transcript_id AT1G15330.1 protein_id AT1G15330.1p transcript_id AT1G15330.1
At1g15340	chr1:005275895	0.0	C/5275895-5276725,5276882-5276986,5277412-5277474	AT1G15340.2 CDS methyl-CPG-binding domain 10 [TAIR10] CDS gene_syn F9L1.28, F9L1_28, MBD10, methyl-CPG-binding domain 10 gene MBD10 function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. go_component nucleus|GO:0005634||IEA go_process biological_process|GO:0008150||ND go_function DNA binding|GO:0003677||ISS go_function methyl-CpG binding|GO:0008327|12787239|ISS product methyl-CPG-binding domain 10 note methyl-CPG-binding domain 10 (MBD10); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 11 (TAIR:AT3G15790.1). protein_id AT1G15340.2p transcript_id AT1G15340.2 protein_id AT1G15340.2p transcript_id AT1G15340.2
At1g15340	chr1:005275895	0.0	C/5275895-5276986,5277412-5277474	AT1G15340.1 CDS methyl-CPG-binding domain 10 [TAIR10] CDS gene_syn F9L1.28, F9L1_28, MBD10, methyl-CPG-binding domain 10 gene MBD10 function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. go_component nucleus|GO:0005634||IEA go_process biological_process|GO:0008150||ND go_function DNA binding|GO:0003677||ISS go_function methyl-CpG binding|GO:0008327|12787239|ISS product methyl-CPG-binding domain 10 note methyl-CPG-binding domain 10 (MBD10); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 11 (TAIR:AT3G15790.1); Has 137026 Blast hits to 72034 proteins in 3183 species: Archae - 674; Bacteria - 27556; Metazoa - 48373; Fungi - 14456; Plants - 6804; Viruses - 747; Other Eukaryotes - 38416 (source: NCBI BLink). protein_id AT1G15340.1p transcript_id AT1G15340.1 protein_id AT1G15340.1p transcript_id AT1G15340.1
At1g15350	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279056	AT1G15350.3 CDS DUF4050 family protein [TAIR10] CDS gene_syn F9L1.29, F9L1_29 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 145 Blast hits to 145 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G15350.3p transcript_id AT1G15350.3 protein_id AT1G15350.3p transcript_id AT1G15350.3
AT1G15350	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279056	AT1G15350.4 AT1G15350.4 CDS DUF4050 family protein
AT1G15350	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279056	AT1G15350.5 AT1G15350.5 CDS DUF4050 family protein
AT1G15350	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279056	AT1G15350.6 AT1G15350.6 CDS DUF4050 family protein
At1g15350	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279189,5279482-5279486	AT1G15350.1 CDS DUF4050 family protein [TAIR10] CDS gene_syn F9L1.29, F9L1_29 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G15350.1p transcript_id AT1G15350.1 protein_id AT1G15350.1p transcript_id AT1G15350.1
At1g15350	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279189,5279482-5279486	AT1G15350.2 CDS DUF4050 family protein [TAIR10] CDS gene_syn F9L1.29, F9L1_29 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G15350.2p transcript_id AT1G15350.2 protein_id AT1G15350.2p transcript_id AT1G15350.2
At1g15360	chr1:005283609	0.0	W/5283609-5283688,5283987-5284506	AT1G15360.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn F9L1.31, F9L1_31, SHINE 1, SHN1, WAX INDUCER 1, WIN1 gene SHN1 function Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to water deprivation|GO:0009414|15319479|IMP go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS go_process cutin biosynthetic process|GO:0010143|17449808|IMP go_process wax metabolic process|GO:0010166|15319479|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9687012|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function sequence-specific DNA binding|GO:0043565|17449808|IPI product Integrase-type DNA-binding superfamily protein note SHINE 1 (SHN1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 5918 Blast hits to 5765 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 23; Plants - 5843; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G15360.1p transcript_id AT1G15360.1 protein_id AT1G15360.1p transcript_id AT1G15360.1
AT1G15360	chr1:005283609	0.0	W/5283609-5283688,5283987-5284506	AT1G15360.2 AT1G15360.2 CDS Integrase-type DNA-binding superfamily protein
At1g15370	chr1:005287135	0.0	W/5287135-5287187,5287801-5287914,5288013-5288092,5288179-5288375	AT1G15370.1 CDS SNARE-like superfamily protein [TAIR10] CDS gene_syn F9L1.32, F9L1_32 go_process transport|GO:0006810||IEA go_function molecular_function|GO:0003674||ND product SNARE-like superfamily protein note SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); Has 91 Blast hits to 91 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 67; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G15370.1p transcript_id AT1G15370.1 protein_id AT1G15370.1p transcript_id AT1G15370.1
At1g15380	chr1:005290955	0.0	W/5290955-5291109,5291215-5291320,5292024-5292287	AT1G15380.1 CDS Lactoylglutathione lyase / glyoxalase I family protein [TAIR10] CDS gene_syn F9L1.33, F9L1_33 go_component cellular_component|GO:0005575||ND go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS product Lactoylglutathione lyase / glyoxalase I family protein note Lactoylglutathione lyase / glyoxalase I family protein; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G80160.1); Has 780 Blast hits to 780 proteins in 276 species: Archae - 1; Bacteria - 484; Metazoa - 4; Fungi - 2; Plants - 222; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). protein_id AT1G15380.1p transcript_id AT1G15380.1 protein_id AT1G15380.1p transcript_id AT1G15380.1
At1g15380	chr1:005290955	0.0	W/5290955-5291109,5291215-5291320,5292024-5292287	AT1G15380.2 CDS Lactoylglutathione lyase / glyoxalase I family protein [TAIR10] CDS gene_syn F9L1.33, F9L1_33 go_component cellular_component|GO:0005575||ND go_process carbohydrate metabolic process|GO:0005975||ISS go_function lactoylglutathione lyase activity|GO:0004462||ISS product Lactoylglutathione lyase / glyoxalase I family protein note Lactoylglutathione lyase / glyoxalase I family protein; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G80160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15380.2p transcript_id AT1G15380.2 protein_id AT1G15380.2p transcript_id AT1G15380.2
At1g15385	chr1:005292976	0.0	C/5292976-5293197	AT1G15385.1 CDS cotton fibre protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15385.1p transcript_id AT1G15385.1 protein_id AT1G15385.1p transcript_id AT1G15385.1
At1g15390	chr1:005294653	0.0	W/5294653-5295063,5295144-5295233,5295317-5295625	AT1G15390.1 CDS peptide deformylase 1A [TAIR10] CDS gene_syn ATDEF1, PDF1A, peptide deformylase 1A gene PDF1A function encodes a peptide deformylase-like protein. Removes N-formyl groups, a prerequisite for the action of methionine aminopeptidase during protein synthesis. Targeted to mitochondria. Requires Zn for catalysis. go_component mitochondrion|GO:0005739|18385124|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component mitochondrion|GO:0005739|11060042|IDA go_component plant-type cell wall|GO:0009505|16287169|IDA go_process translation|GO:0006412||ISS go_process co-translational protein modification|GO:0043686|11733990|IDA go_function peptide deformylase activity|GO:0042586|11733990|IDA go_function peptide deformylase activity|GO:0042586||ISS product peptide deformylase 1A note peptide deformylase 1A (PDF1A); FUNCTIONS IN: peptide deformylase activity; INVOLVED IN: translation, co-translational protein modification; LOCATED IN: mitochondrion, chloroplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181); BEST Arabidopsis thaliana protein match is: peptide deformylase 1B (TAIR:AT5G14660.2); Has 10999 Blast hits to 10999 proteins in 2667 species: Archae - 4; Bacteria - 8033; Metazoa - 124; Fungi - 0; Plants - 109; Viruses - 2; Other Eukaryotes - 2727 (source: NCBI BLink). protein_id AT1G15390.1p transcript_id AT1G15390.1 protein_id AT1G15390.1p transcript_id AT1G15390.1
At1g15400	chr1:005296019	0.0	C/5296019-5296046,5296406-5296824	AT1G15400.3 CDS hypothetical protein [TAIR10] CDS gene_syn F9L1.35, F9L1_35 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G15400.3p transcript_id AT1G15400.3 protein_id AT1G15400.3p transcript_id AT1G15400.3
At1g15400	chr1:005296033	0.0	C/5296033-5296051,5296406-5296824	AT1G15400.1 CDS hypothetical protein [TAIR10] CDS gene_syn F9L1.35, F9L1_35 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G15400.1p transcript_id AT1G15400.1 protein_id AT1G15400.1p transcript_id AT1G15400.1
At1g15400	chr1:005296402	0.0	C/5296402-5296824	AT1G15400.2 CDS hypothetical protein [TAIR10] CDS gene_syn F9L1.35, F9L1_35 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G15400.2p transcript_id AT1G15400.2 protein_id AT1G15400.2p transcript_id AT1G15400.2
At1g15405	chr1:005297875	0.0	C/5297875-5298166	AT1G15405.1 [TAIR10] ncRNA function Unknown gene product other RNA transcript_id AT1G15405.1
At1g15410	chr1:005299577	0.0	W/5299577-5300293,5300406-5300681	AT1G15410.1 CDS aspartate-glutamate racemase family [TAIR10] CDS gene_syn F9L1.36, F9L1_36 go_component chloroplast|GO:0009507|18431481|IDA go_process cellular amino acid metabolic process|GO:0006520||IEA go_process metabolic process|GO:0008152||IEA go_function racemase and epimerase activity, acting on amino acids and derivatives|GO:0016855||IEA go_process metabolic process|GO:0008152||ISS go_function racemase and epimerase activity, acting on amino acids and derivatives|GO:0016855||ISS product aspartate-glutamate racemase family note aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57; Bacteria - 1708; Metazoa - 0; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink). protein_id AT1G15410.1p transcript_id AT1G15410.1 protein_id AT1G15410.1p transcript_id AT1G15410.1
AT1G15410	chr1:005299577	0.0	W/5299577-5300293,5300406-5300681	AT1G15410.2 AT1G15410.2 CDS aspartate-glutamate racemase family
At1g15415	chr1:005300931	0.0	C/5300931-5301104,5301189-5301242,5301350-5301412	AT1G15415.1 CDS late embryogenesis abundant-like protein [TAIR10] CDS gene_syn F9L1.37, F9L1_37 function The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol. go_component nucleus|GO:0005634|19672620|IDA go_component cytosol|GO:0005829|19672620|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: male gametophyte; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15415.1p transcript_id AT1G15415.1 protein_id AT1G15415.1p transcript_id AT1G15415.1
At1g15420	chr1:005301794	0.0	C/5301794-5301979,5302152-5302214,5302334-5302445,5302526-5302608,5302689-5302936,5303059-5303157,5303251-5303296	AT1G15420.1 CDS WD repeat protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). protein_id AT1G15420.1p transcript_id AT1G15420.1 protein_id AT1G15420.1p transcript_id AT1G15420.1
AT1G15420	chr1:005302253	0.0	C/5302253-5302445,5302526-5302608,5302689-5302936,5303059-5303157,5303251-5303296	AT1G15420.2 AT1G15420.2 CDS WD repeat protein
At1g15430	chr1:005305011	0.0	W/5305011-5305790	AT1G15430.1 CDS hypothetical protein (DUF1644) [TAIR10] CDS gene_syn F9L1.39, F9L1_39 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1644) note Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 273 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15430.1p transcript_id AT1G15430.1 protein_id AT1G15430.1p transcript_id AT1G15430.1
At1g15430	chr1:005305011	0.0	W/5305011-5305790	AT1G15430.2 CDS hypothetical protein (DUF1644) [TAIR10] CDS gene_syn F9L1.39, F9L1_39 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1644) note Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15430.2p transcript_id AT1G15430.2 protein_id AT1G15430.2p transcript_id AT1G15430.2
At1g15440	chr1:005306159	0.0	C/5306159-5306329,5306419-5306646,5306730-5307074,5307174-5307545,5307686-5307778,5307867-5308118,5308219-5308843,5308964-5309460	AT1G15440.2 CDS periodic tryptophan protein 2 [TAIR10] CDS gene_syn (PERIODIC TRYPTOPHAN PROTEIN 2, ATPWP2, F9L1.40, F9L1_40, PWP2, periodic tryptophan protein 2 gene PWP2 go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product periodic tryptophan protein 2 note periodic tryptophan protein 2 (PWP2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15440.2p transcript_id AT1G15440.2 protein_id AT1G15440.2p transcript_id AT1G15440.2
At1g15440	chr1:005306159	0.0	C/5306159-5306329,5306419-5306646,5306730-5307074,5307174-5307545,5307686-5307778,5307867-5308118,5308219-5309460	AT1G15440.1 CDS periodic tryptophan protein 2 [TAIR10] CDS gene_syn (PERIODIC TRYPTOPHAN PROTEIN 2, ATPWP2, F9L1.40, F9L1_40, PWP2, periodic tryptophan protein 2 gene PWP2 go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product periodic tryptophan protein 2 note periodic tryptophan protein 2 (PWP2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 76374 Blast hits to 32281 proteins in 860 species: Archae - 60; Bacteria - 9617; Metazoa - 31125; Fungi - 15572; Plants - 10039; Viruses - 0; Other Eukaryotes - 9961 (source: NCBI BLink). protein_id AT1G15440.1p transcript_id AT1G15440.1 protein_id AT1G15440.1p transcript_id AT1G15440.1
At1g15450	chr1:005309647	0.0	C/5309647-5309718	AT1G15450.1 [TAIR10] tRNA gene_syn 51439.TRNA-TRP-1, 51691.TRNA-TRP-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Trp (anticodon: CCA) transcript_id AT1G15450.1
AT1G15460	chr1:005310196	0.0	C/5310196-5310255,5310341-5310460,5310610-5310889,5310983-5311320,5311412-5311528,5311605-5311700,5311775-5311948,5312035-5312201,5312282-5312586,5312679-5312755	AT1G15460.4 AT1G15460.4 CDS HCO3- transporter family
At1g15460	chr1:005310196	0.0	C/5310196-5310255,5310341-5310460,5310610-5310889,5310983-5311320,5311412-5311528,5311605-5311700,5311775-5311948,5312035-5312201,5312282-5312586,5312679-5312871,5313089-5313171,5313258-5313376	AT1G15460.1 CDS HCO3- transporter family [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, ATBOR4, BOR4, F9L1.41, F9L1_41, REQUIRES HIGH BORON 4 gene BOR4 function Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions. go_component plasma membrane|GO:0005886|18048682|IDA go_process boron transport|GO:0046713|18048682|IMP go_function anion exchanger activity|GO:0015380||ISS go_function boron efflux transmembrane transporter activity|GO:0080139|18048682|IMP product HCO3- transporter family note REQUIRES HIGH BORON 4 (BOR4); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT1G74810.1); Has 2623 Blast hits to 1400 proteins in 194 species: Archae - 0; Bacteria - 4; Metazoa - 1965; Fungi - 314; Plants - 231; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink). protein_id AT1G15460.1p transcript_id AT1G15460.1 protein_id AT1G15460.1p transcript_id AT1G15460.1
AT1G15460	chr1:005310196	0.0	C/5310196-5310255,5310341-5310460,5310610-5310889,5310983-5311320,5311412-5311528,5311605-5311700,5311775-5311948,5312035-5312201,5312282-5312586,5312679-5312871,5313089-5313171,5313258-5313376	AT1G15460.2 AT1G15460.2 CDS HCO3- transporter family
AT1G15460	chr1:005310514	0.0	C/5310514-5310889,5310983-5311320,5311412-5311528,5311605-5311700,5311775-5311948,5312035-5312201,5312282-5312586,5312679-5312871,5313089-5313171,5313258-5313376	AT1G15460.3 AT1G15460.3 CDS HCO3- transporter family
At1g15470	chr1:005315838	0.0	W/5315838-5315940,5316173-5316308,5316509-5316590,5316766-5316941,5317027-5317164,5317250-5317389,5317470-5317696	AT1G15470.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn F9L1.42, F9L1_42 go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1); Has 41653 Blast hits to 22434 proteins in 735 species: Archae - 64; Bacteria - 7048; Metazoa - 15440; Fungi - 9730; Plants - 4355; Viruses - 0; Other Eukaryotes - 5016 (source: NCBI BLink). protein_id AT1G15470.1p transcript_id AT1G15470.1 protein_id AT1G15470.1p transcript_id AT1G15470.1
AT1G15470	chr1:005315838	0.0	W/5315838-5315940,5316173-5316308,5316509-5316590,5316766-5316941,5317027-5317164,5317250-5317463	AT1G15470.2 AT1G15470.2 CDS Transducin/WD40 repeat-like superfamily protein
At1g15480	chr1:005318307	0.0	W/5318307-5318335,5318500-5319007,5319175-5320422	AT1G15480.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F9L1.43, F9L1_43 go_process biological_process|GO:0008150||ND go_function DNA binding|GO:0003677||ISS product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PENTATRICOPEPTIDE REPEAT 596 (TAIR:AT1G80270.3); Has 10417 Blast hits to 5237 proteins in 200 species: Archae - 3; Bacteria - 20; Metazoa - 156; Fungi - 81; Plants - 9958; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). protein_id AT1G15480.1p transcript_id AT1G15480.1 protein_id AT1G15480.1p transcript_id AT1G15480.1
AT1G15490	chr1:005320859	0.0	C/5320859-5320981,5321076-5321276,5321348-5321551,5321634-5321762,5321846-5322562,5322653-5322769	AT1G15490.3 AT1G15490.3 CDS alpha/beta-Hydrolases superfamily protein
At1g15490	chr1:005320859	0.0	C/5320859-5320981,5321076-5321276,5321348-5321551,5321634-5321762,5321846-5322562,5322653-5322960,5323158-5323422	AT1G15490.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F9L1.44, F9L1_44 go_function hydrolase activity|GO:0016787||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G80280.1); Has 5830 Blast hits to 5818 proteins in 1057 species: Archae - 56; Bacteria - 4179; Metazoa - 223; Fungi - 71; Plants - 420; Viruses - 1; Other Eukaryotes - 880 (source: NCBI BLink). protein_id AT1G15490.1p transcript_id AT1G15490.1 protein_id AT1G15490.1p transcript_id AT1G15490.1
AT1G15490	chr1:005320859	0.0	C/5320859-5320981,5321076-5321276,5321348-5321551,5321634-5321762,5321846-5322562,5322653-5323012	AT1G15490.2 AT1G15490.2 CDS alpha/beta-Hydrolases superfamily protein
AT1G15490	chr1:005321312	0.0	C/5321312-5321551,5321634-5321762,5321846-5322562,5322653-5322960,5323158-5323422	AT1G15490.4 AT1G15490.4 CDS alpha/beta-Hydrolases superfamily protein
At1g15500	chr1:005326426	0.0	W/5326426-5327205,5327350-5327604,5327691-5327834,5327926-5328273,5328359-5328688	AT1G15500.1 CDS TLC ATP/ADP transporter [TAIR10] CDS gene_syn ATNTT2, T16N11.1, T16N11_1 gene ATNTT2 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_process transport|GO:0006810||IEA go_component cytoplasm|GO:0005737|15610358|IDA go_function ATP:ADP antiporter activity|GO:0005471||ISS product TLC ATP/ADP transporter note ATNTT2; FUNCTIONS IN: ATP:ADP antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: ADP/ATP carrier protein (InterPro:IPR004667); BEST Arabidopsis thaliana protein match is: nucleotide transporter 1 (TAIR:AT1G80300.1); Has 767 Blast hits to 762 proteins in 173 species: Archae - 0; Bacteria - 466; Metazoa - 8; Fungi - 28; Plants - 101; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink). protein_id AT1G15500.1p transcript_id AT1G15500.1 protein_id AT1G15500.1p transcript_id AT1G15500.1
At1g15510	chr1:005329111	0.0	W/5329111-5331711	AT1G15510.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, ATECB2, EARLY CHLOROPLAST BIOGENESIS2, ECB2, T16N11.2, T16N11_2, VAC1, VANILLA CREAM 1 gene ECB2 function Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis. go_component chloroplast|GO:0009507|19500301|IDA go_process response to light stimulus|GO:0009416|20143129|IEP go_process RNA modification|GO:0009451|19500301|IMP go_process RNA modification|GO:0009451|20143129|IMP go_process chloroplast organization|GO:0009658|19500301|IMP go_process growth|GO:0040007|19889879|IMP product Tetratricopeptide repeat (TPR)-like superfamily protein note EARLY CHLOROPLAST BIOGENESIS2 (ECB2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 49765 Blast hits to 13993 proteins in 266 species: Archae - 0; Bacteria - 6; Metazoa - 64; Fungi - 140; Plants - 48782; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink). protein_id AT1G15510.1p transcript_id AT1G15510.1 protein_id AT1G15510.1p transcript_id AT1G15510.1
At1g15520	chr1:005331993	0.0	C/5331993-5332253,5332346-5332600,5332684-5332855,5332949-5333176,5333262-5333395,5333478-5333561,5333645-5333935,5334018-5334350,5334431-5334612,5334707-5334863,5334964-5335067,5335151-5335311,5335407-5335723,5335831-5336112,5336194-5336586,5336673-5336726,5336811-5336887,5336985-5337144,5337244-5337328,5337421-5337509,5337598-5337718,5337844-5338175	AT1G15520.1 CDS pleiotropic drug resistance 12 [TAIR10] CDS gene_syn ABCG40, ARABIDOPSIS THALIANA ATP-BINDING CASSETTE FAMILY G 40, ATABCG40, ATP-BINDING CASSETTE FAMILY G40, ATPDR12, PDR12, PLEIOTROPIC DRUG RESISTANCE 12, T16N11.3, T16N11_3, pleiotropic drug resistance 12 gene PDR12 function ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots. go_component plasma membrane|GO:0005886|15923333|IDA go_component plasma membrane|GO:0005886|20133880|IDA go_process drug transmembrane transport|GO:0006855|16506311|ISS go_process response to biotic stimulus|GO:0009607|16506311|TAS go_process response to ethylene stimulus|GO:0009723|16506311|TAS go_process response to salicylic acid stimulus|GO:0009751|16506311|TAS go_process response to jasmonic acid stimulus|GO:0009753|16506311|TAS go_process response to ozone|GO:0010193|19054359|IEP go_process response to cyclopentenone|GO:0010583|18334669|IEP go_process lead ion transport|GO:0015692|15923333|IMP go_process terpenoid transport|GO:0046865|20133880|IDA go_process abscisic acid transport|GO:0080168|20133880|IDA go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product pleiotropic drug resistance 12 note pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink). protein_id AT1G15520.1p transcript_id AT1G15520.1 protein_id AT1G15520.1p transcript_id AT1G15520.1
AT1G15520	chr1:005332561	0.0	C/5332561-5332855,5332949-5333176,5333262-5333395,5333478-5333561,5333645-5333935,5334018-5334350,5334431-5334612,5334707-5334863,5334964-5335067,5335151-5335311,5335407-5335723,5335831-5336112,5336194-5336586,5336673-5336726,5336811-5336887,5336985-5337144,5337244-5337328,5337421-5337509,5337598-5337718,5337844-5338175	AT1G15520.2 AT1G15520.2 CDS pleiotropic drug resistance 12
At1g15530	chr1:005339961	0.0	C/5339961-5341931	AT1G15530.1 CDS Concanavalin A-like lectin protein kinase family protein [TAIR10] CDS gene_syn T16N11.4, T16N11_4 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301||ISS go_function carbohydrate binding|GO:0030246||ISS product Concanavalin A-like lectin protein kinase family protein note Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: synergid, cultured cell; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G29050.1); Has 122402 Blast hits to 120886 proteins in 4615 species: Archae - 112; Bacteria - 13960; Metazoa - 45016; Fungi - 10521; Plants - 34601; Viruses - 479; Other Eukaryotes - 17713 (source: NCBI BLink). protein_id AT1G15530.1p transcript_id AT1G15530.1 protein_id AT1G15530.1p transcript_id AT1G15530.1
AT1G15535	chr1:005341405	0.0	W/5341405-5341674,5341698-5341948,5342056-5342096,5342284-5342300	AT1G15535.1 AT1G15535.1 CDS hypothetical protein
AT1G15540	chr1:005342425	0.0	W/5342425-5342428,5342582-5342972,5343058-5343382,5343454-5343705	AT1G15540.2 AT1G15540.2 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
AT1G15540	chr1:005342566	0.0	W/5342566-5342972,5343058-5343382,5343454-5343705	AT1G15540.3 AT1G15540.3 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
At1g15540	chr1:005342587	0.0	W/5342587-5342972,5343058-5343382,5343454-5343705	AT1G15540.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn T16N11.5, T16N11_5 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function oxidoreductase activity|GO:0016491||IEA product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G80320.1); Has 4520 Blast hits to 4453 proteins in 605 species: Archae - 0; Bacteria - 428; Metazoa - 27; Fungi - 309; Plants - 3395; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink). protein_id AT1G15540.1p transcript_id AT1G15540.1 protein_id AT1G15540.1p transcript_id AT1G15540.1
At1g15550	chr1:005344569	0.0	C/5344569-5345154,5345588-5346078	AT1G15550.1 CDS gibberellin 3-oxidase 1 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, ATGA3OX1, GA REQUIRING 4, GA3OX1, GA4, GIBBERELLIN 3 BETA-HYDROXYLASE, T16N11.6, T16N11_6, gibberellin 3-oxidase 1 gene GA3OX1 function Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback). go_component cytoplasm|GO:0005737|9701576|TAS go_process response to red or far red light|GO:0009639|17010113|IEP go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS go_process gibberellin biosynthetic process|GO:0009686|2236013|IMP go_process response to gibberellin stimulus|GO:0009739|15927942|IEP go_process response to gibberellin stimulus|GO:0009739|17277098|IEP go_process response to gibberellin stimulus|GO:0009739|17933900|IEP go_process gibberellic acid mediated signaling pathway|GO:0009740|9701576|TAS go_process response to red light|GO:0010114|17449805|IEP go_function transcription factor binding|GO:0008134|17277098|IPI go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|2236013|IMP go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|9625708|IDA go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|9701576|TAS product gibberellin 3-oxidase 1 note gibberellin 3-oxidase 1 (GA3OX1); CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 3-oxidase 2 (TAIR:AT1G80340.1); Has 8504 Blast hits to 8472 proteins in 995 species: Archae - 0; Bacteria - 1119; Metazoa - 109; Fungi - 1012; Plants - 4925; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink). protein_id AT1G15550.1p transcript_id AT1G15550.1 protein_id AT1G15550.1p transcript_id AT1G15550.1
At1g15560	chr1:005352655	0.0	C/5352655-5353074,5353232-5353408	AT1G15560.1 CDS PttA/En/Spm family plant transposase [TAIR10] mRNA
At1g15570	chr1:005363034	0.0	W/5363034-5363249,5363361-5363607,5363704-5363840,5363938-5364030,5364119-5364252,5364337-5364412,5364485-5364595,5364691-5364840,5364935-5365069,5365165-5365218	AT1G15570.1 CDS CYCLIN A2;3 [TAIR10] CDS gene_syn CYCA2;3, CYCLIN A2;3, T16N11.8, T16N11_8 gene CYCA2;3 function A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues. go_component nucleus|GO:0005634|15610358|IDA go_component nucleus|GO:0005634|16415207|IDA go_component nucleus|GO:0005634|20018602|IDA go_process DNA endoreduplication|GO:0042023|16415207|IMP go_process regulation of cell cycle|GO:0051726||ISS go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS product CYCLIN A2;3 note CYCLIN A2;3 (CYCA2;3); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: Cyclin A2;4 (TAIR:AT1G80370.1); Has 4146 Blast hits to 4144 proteins in 368 species: Archae - 0; Bacteria - 0; Metazoa - 1906; Fungi - 532; Plants - 1053; Viruses - 34; Other Eukaryotes - 621 (source: NCBI BLink). protein_id AT1G15570.1p transcript_id AT1G15570.1 protein_id AT1G15570.1p transcript_id AT1G15570.1
At1g15580	chr1:005365764	0.0	C/5365764-5365824,5365913-5365997,5366115-5366460	AT1G15580.1 CDS indole-3-acetic acid inducible 5 [TAIR10] CDS gene_syn ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, T16N11.9, T16N11_9, indole-3-acetic acid inducible 5 gene IAA5 function auxin induced protein go_component nucleus|GO:0005634||IEA go_process response to auxin stimulus|GO:0009733|12036262|TAS go_process response to auxin stimulus|GO:0009733|2102379|IEP go_process response to brassinosteroid stimulus|GO:0009741|16367964|TAS go_process response to cyclopentenone|GO:0010583|18334669|IEP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product indole-3-acetic acid inducible 5 note indole-3-acetic acid inducible 5 (IAA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 19 (TAIR:AT3G15540.1); Has 1807 Blast hits to 1806 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1806; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G15580.1p transcript_id AT1G15580.1 protein_id AT1G15580.1p transcript_id AT1G15580.1
At1g15590	chr1:005367374	0.0	W/5367374-5367759,5367838-5367963,5368205-5368232	AT1G15590.1 CDS E3 ubiquitin-protein ligase, putative [TAIR10] CDS gene_syn T16N11.26, T16N11_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G80400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G15590.1p transcript_id AT1G15590.1 protein_id AT1G15590.1p transcript_id AT1G15590.1
At1g15590	chr1:005367374	0.0	W/5367374-5367759,5367838-5367963,5368205-5368232	AT1G15590.2 CDS E3 ubiquitin-protein ligase, putative [TAIR10] CDS gene_syn T16N11.26, T16N11_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G80400.1). protein_id AT1G15590.2p transcript_id AT1G15590.2 protein_id AT1G15590.2p transcript_id AT1G15590.2
At1g15600	chr1:005368923	0.0	W/5368923-5369278,5369352-5369480,5369584-5369761	AT1G15600.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T16N11.10, T16N11_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1); Has 227 Blast hits to 227 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15600.1p transcript_id AT1G15600.1 protein_id AT1G15600.1p transcript_id AT1G15600.1
At1g15610	chr1:005370793	0.0	W/5370793-5371184,5371261-5371386,5371466-5371679	AT1G15610.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T16N11.11, T16N11_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15630.1); Has 129 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15610.1p transcript_id AT1G15610.1 protein_id AT1G15610.1p transcript_id AT1G15610.1
At1g15610	chr1:005370793	0.0	W/5370793-5371184,5371261-5371386,5371493-5371679	AT1G15610.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T16N11.11, T16N11_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15630.1). protein_id AT1G15610.2p transcript_id AT1G15610.2 protein_id AT1G15610.2p transcript_id AT1G15610.2
At1g15620	chr1:005373553	0.0	W/5373553-5373935,5374020-5374145,5374248-5374476	AT1G15620.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T16N11.13, T16N11_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15640.1); Has 125 Blast hits to 124 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15620.1p transcript_id AT1G15620.1 protein_id AT1G15620.1p transcript_id AT1G15620.1
AT1G15625	chr1:005374935	0.0	W/5374935-5375233,5375323-5375448,5375538-5375655	AT1G15625.1 AT1G15625.1 CDS E3 ubiquitin-protein ligase, putative
At1g15630	chr1:005376988	0.0	W/5376988-5377427,5377511-5377633,5377713-5377938	AT1G15630.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T16N11.14, T16N11_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15610.1); Has 122 Blast hits to 122 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15630.1p transcript_id AT1G15630.1 protein_id AT1G15630.1p transcript_id AT1G15630.1
At1g15640	chr1:005379077	0.0	W/5379077-5379480,5379565-5379690,5379790-5380027	AT1G15640.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T16N11.15, T16N11_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1); Has 154 Blast hits to 146 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15640.1p transcript_id AT1G15640.1 protein_id AT1G15640.1p transcript_id AT1G15640.1
AT1G15640	chr1:005379077	0.0	W/5379077-5379480,5379565-5379724	AT1G15640.2 AT1G15640.2 CDS transmembrane protein, putative
AT1G15645	chr1:005380109	0.0	C/5380109-5380150,5380182-5380254,5380463-5380533	AT1G15645.1 AT1G15645.1 CDS hypothetical protein
At1g15650	chr1:005380907	0.0	W/5380907-5380988	AT1G15650.1 [TAIR10] tRNA gene_syn 51691.TRNA-SER-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ser (anticodon: AGA) transcript_id AT1G15650.1
At1g15660	chr1:005381230	0.0	W/5381230-5381397,5381980-5382134,5382250-5382335,5382417-5382513,5382622-5382779,5382866-5383611,5383702-5383771,5383940-5384088,5384381-5384630,5384740-5384847,5384927-5385057	AT1G15660.1 CDS centromere protein C [TAIR10] CDS gene_syn CENP-C, CENP-C HOMOLOGUE, T16N11.16, T16N11_16, centromere protein C gene CENP-C function Encodes a homologue of the human centromeric protein C (CENP-C). CENP-C co-localizes with the 180 bp centromeric regions of chromosomes throughout the cell cycle, but does not completely cover the 180 bp regions. go_component chromosome, centromeric region|GO:0000775|15329494|IDA go_component nucleus|GO:0005634|15329494|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product centromere protein C note centromere protein C (CENP-C); Has 380 Blast hits to 353 proteins in 129 species: Archae - 0; Bacteria - 6; Metazoa - 108; Fungi - 26; Plants - 78; Viruses - 8; Other Eukaryotes - 154 (source: NCBI BLink). protein_id AT1G15660.1p transcript_id AT1G15660.1 protein_id AT1G15660.1p transcript_id AT1G15660.1
At1g15670	chr1:005390119	0.0	W/5390119-5391198	AT1G15670.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F7H2.1, F7H2_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G80440.1); Has 1241 Blast hits to 1194 proteins in 125 species: Archae - 6; Bacteria - 99; Metazoa - 399; Fungi - 6; Plants - 685; Viruses - 3; Other Eukaryotes - 43 (source: NCBI BLink). protein_id AT1G15670.1p transcript_id AT1G15670.1 protein_id AT1G15670.1p transcript_id AT1G15670.1
At1g15680	chr1:005393407	0.0	W/5393407-5394639	AT1G15680.1 CDS F-box family protein [TAIR10] CDS gene_syn F7H2.2, F7H2_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G49990.1); Has 875 Blast hits to 870 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 875; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15680.1p transcript_id AT1G15680.1 protein_id AT1G15680.1p transcript_id AT1G15680.1
At1g15690	chr1:005399115	0.0	W/5399115-5399376,5399575-5400149,5400237-5400616,5400717-5400803,5400885-5401215,5401346-5401608,5402155-5402185	AT1G15690.2 CDS Inorganic H pyrophosphatase family protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA V-PPASE 3, ATAVP3, AVP-3, AVP1, AtVHP1;1, F7H2.3, F7H2_3, VACUOLAR H+ - PYROPHOSPHATASE AVP-3 gene AVP1 function Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1. go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component vacuolar membrane|GO:0005774|16618929|IDA go_component plasma membrane|GO:0005886|16210544|IDA go_component plant-type vacuole membrane|GO:0009705|1311852|IDA go_component endosome membrane|GO:0010008|16210544|IDA go_process response to water deprivation|GO:0009414|11572991|IMP go_process response to salt stress|GO:0009651|11572991|IMP go_process auxin polar transport|GO:0009926|16210544|IGI go_process establishment or maintenance of transmembrane electrochemical gradient|GO:0010248|1311852|TAS go_process leaf development|GO:0048366|20460583|IMP go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|1311852|IDA go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|20605924|IDA product Inorganic H pyrophosphatase family protein note AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: response to water deprivation, response to salt stress, establishment or maintenance of transmembrane electrochemical gradient, leaf development, auxin polar transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1); Has 5891 Blast hits to 5869 proteins in 792 species: Archae - 67; Bacteria - 1317; Metazoa - 5; Fungi - 0; Plants - 299; Viruses - 0; Other Eukaryotes - 4203 (source: NCBI BLink). protein_id AT1G15690.2p transcript_id AT1G15690.2 protein_id AT1G15690.2p transcript_id AT1G15690.2
At1g15690	chr1:005399115	0.0	W/5399115-5399376,5399575-5400149,5400237-5400616,5400717-5400803,5400885-5401215,5401346-5401756,5401838-5401897,5401979-5402185	AT1G15690.1 CDS Inorganic H pyrophosphatase family protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA V-PPASE 3, ATAVP3, AVP-3, AVP1, AtVHP1;1, F7H2.3, F7H2_3, VACUOLAR H+ - PYROPHOSPHATASE AVP-3 gene AVP1 function Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1. go_component plant-type vacuole|GO:0000325|16618929|IDA go_component vacuole|GO:0005773|14760709|IDA go_component vacuole|GO:0005773|15215502|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component vacuolar membrane|GO:0005774|16618929|IDA go_component plasma membrane|GO:0005886|16210544|IDA go_component plant-type vacuole membrane|GO:0009705|1311852|IDA go_component endosome membrane|GO:0010008|16210544|IDA go_process response to water deprivation|GO:0009414|11572991|IMP go_process response to salt stress|GO:0009651|11572991|IMP go_process auxin polar transport|GO:0009926|16210544|IGI go_process establishment or maintenance of transmembrane electrochemical gradient|GO:0010248|1311852|TAS go_process leaf development|GO:0048366|20460583|IMP go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|1311852|IDA go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|20605924|IDA product Inorganic H pyrophosphatase family protein note AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: response to water deprivation, response to salt stress, establishment or maintenance of transmembrane electrochemical gradient, leaf development, auxin polar transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1); Has 6470 Blast hits to 6448 proteins in 793 species: Archae - 67; Bacteria - 1322; Metazoa - 5; Fungi - 1; Plants - 304; Viruses - 0; Other Eukaryotes - 4771 (source: NCBI BLink). protein_id AT1G15690.1p transcript_id AT1G15690.1 protein_id AT1G15690.1p transcript_id AT1G15690.1
At1g15700	chr1:005402629	0.0	C/5402629-5403789	AT1G15700.1 CDS ATPase, F1 complex, gamma subunit protein [TAIR10] CDS gene_syn ATPC2, F7H2.4, F7H2_4 gene ATPC2 function One of two genes that encode the gamma subunit of Arabidopsis chloroplast ATP synthase. It is thought to be involved in the regulation of the ATP synthase activity. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|1826905|IDA go_component chloroplast ATP synthase complex|GO:0009544|1826905|TAS go_process ATP synthesis coupled proton transport|GO:0015986|1826905|TAS go_function enzyme regulator activity|GO:0030234|1826905|TAS product ATPase, F1 complex, gamma subunit protein note ATPC2; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: chloroplast ATP synthase complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPase, F1 complex, gamma subunit protein (TAIR:AT4G04640.1); Has 9547 Blast hits to 9544 proteins in 2715 species: Archae - 5; Bacteria - 5540; Metazoa - 280; Fungi - 148; Plants - 177; Viruses - 0; Other Eukaryotes - 3397 (source: NCBI BLink). protein_id AT1G15700.1p transcript_id AT1G15700.1 protein_id AT1G15700.1p transcript_id AT1G15700.1
At1g15710	chr1:005404505	0.0	W/5404505-5405581	AT1G15710.1 CDS prephenate dehydrogenase family protein [TAIR10] CDS gene_syn F7H2.5, F7H2_5 go_component chloroplast|GO:0009507|18431481|IDA go_process tyrosine biosynthetic process|GO:0006571||IEA go_function prephenate dehydrogenase (NADP+) activity|GO:0004665||IEA go_process tyrosine biosynthetic process|GO:0006571||ISS go_function prephenate dehydrogenase (NADP+) activity|GO:0004665||ISS product prephenate dehydrogenase family protein note prephenate dehydrogenase family protein; FUNCTIONS IN: prephenate dehydrogenase (NADP+) activity; INVOLVED IN: tyrosine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydrogenase (InterPro:IPR003099), Arogenate/prephenate dehydrogenase (InterPro:IPR012070); BEST Arabidopsis thaliana protein match is: arogenate dehydrogenase (TAIR:AT5G34930.1); Has 919 Blast hits to 907 proteins in 395 species: Archae - 81; Bacteria - 505; Metazoa - 3; Fungi - 100; Plants - 115; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink). protein_id AT1G15710.1p transcript_id AT1G15710.1 protein_id AT1G15710.1p transcript_id AT1G15710.1
At1g15720	chr1:005406138	0.0	W/5406138-5407310	AT1G15720.1 CDS TRF-like 5 [TAIR10] CDS gene_syn F7H2.6, F7H2_6, TRF-like 5, TRFL5 gene TRFL5 function Arabidopsis thaliana myb family transcription factor (At1g15720) go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product TRF-like 5 note TRF-like 5 (TRFL5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G58340.2); Has 513 Blast hits to 506 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 41; Plants - 402; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G15720.1p transcript_id AT1G15720.1 protein_id AT1G15720.1p transcript_id AT1G15720.1
At1g15730	chr1:005407535	0.0	C/5407535-5407672,5407781-5407885,5408031-5408116,5408203-5408318,5408501-5408592,5408688-5408738,5408903-5409099,5409200-5409380,5409459-5409524,5409623-5409937	AT1G15730.1 CDS Cobalamin biosynthesis CobW-like protein [TAIR10] CDS gene_syn F7H2.7, F7H2_7 product Cobalamin biosynthesis CobW-like protein note Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 17 (TAIR:AT1G80480.1); Has 16369 Blast hits to 11834 proteins in 1861 species: Archae - 128; Bacteria - 8189; Metazoa - 1729; Fungi - 553; Plants - 409; Viruses - 6; Other Eukaryotes - 5355 (source: NCBI BLink). protein_id AT1G15730.1p transcript_id AT1G15730.1 protein_id AT1G15730.1p transcript_id AT1G15730.1
At1g15740	chr1:005411509	0.0	W/5411509-5411724,5411801-5411929,5412013-5412220,5412342-5412488,5412607-5412681,5412757-5412828,5412927-5413001,5413096-5413167,5413264-5413335,5413445-5413516,5413594-5413665,5413752-5413895,5413981-5414052,5414136-5414282,5414360-5414544	AT1G15740.1 CDS Leucine-rich repeat family protein [TAIR10] CDS gene_syn F7H2.8, F7H2_8 go_component cellular_component|GO:0005575||ND product Leucine-rich repeat family protein note Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink). protein_id AT1G15740.1p transcript_id AT1G15740.1 protein_id AT1G15740.1p transcript_id AT1G15740.1
At1g15750	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.1 CDS Transducin family protein / WD-40 repeat family protein [TAIR10] CDS gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1 gene TPL function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. go_component nucleus|GO:0005634|16763149|IDA go_component cytosol|GO:0005829|18433157|IDA go_process response to auxin stimulus|GO:0009733|18258861|IPI go_process jasmonic acid mediated signaling pathway|GO:0009867|20360743|IMP go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP go_function protein binding|GO:0005515|16461579|IPI go_function protein binding|GO:0005515|20360743|IPI go_function transcription repressor activity|GO:0016564|18258861|IDA go_function protein homodimerization activity|GO:0042803|18258861|IPI product Transducin family protein / WD-40 repeat family protein note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification, jasmonic acid mediated signaling pathway; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 1 (TAIR:AT1G80490.2); Has 22110 Blast hits to 13392 proteins in 605 species: Archae - 36; Bacteria - 4397; Metazoa - 7838; Fungi - 4804; Plants - 2241; Viruses - 6; Other Eukaryotes - 2788 (source: NCBI BLink). protein_id AT1G15750.1p transcript_id AT1G15750.1 protein_id AT1G15750.1p transcript_id AT1G15750.1
At1g15750	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.2 CDS Transducin family protein / WD-40 repeat family protein [TAIR10] CDS gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1 gene TPL function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. go_component nucleus|GO:0005634|16763149|IDA go_component cytosol|GO:0005829|18433157|IDA go_process response to auxin stimulus|GO:0009733|18258861|IPI go_process jasmonic acid mediated signaling pathway|GO:0009867|20360743|IMP go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP go_function protein binding|GO:0005515|16461579|IPI go_function protein binding|GO:0005515|20360743|IPI go_function transcription repressor activity|GO:0016564|18258861|IDA go_function protein homodimerization activity|GO:0042803|18258861|IPI product Transducin family protein / WD-40 repeat family protein note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification, jasmonic acid mediated signaling pathway; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 1 (TAIR:AT1G80490.2); Has 22110 Blast hits to 13392 proteins in 605 species: Archae - 36; Bacteria - 4397; Metazoa - 7838; Fungi - 4804; Plants - 2241; Viruses - 6; Other Eukaryotes - 2788 (source: NCBI BLink). protein_id AT1G15750.2p transcript_id AT1G15750.2 protein_id AT1G15750.2p transcript_id AT1G15750.2
At1g15750	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.3 CDS Transducin family protein / WD-40 repeat family protein [TAIR10] CDS gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1 gene TPL function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. go_component nucleus|GO:0005634|16763149|IDA go_component cytosol|GO:0005829|18433157|IDA go_process response to auxin stimulus|GO:0009733|18258861|IPI go_process jasmonic acid mediated signaling pathway|GO:0009867|20360743|IMP go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP go_function protein binding|GO:0005515|16461579|IPI go_function protein binding|GO:0005515|20360743|IPI go_function transcription repressor activity|GO:0016564|18258861|IDA go_function protein homodimerization activity|GO:0042803|18258861|IPI product Transducin family protein / WD-40 repeat family protein note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification, jasmonic acid mediated signaling pathway; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 1 (TAIR:AT1G80490.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15750.3p transcript_id AT1G15750.3 protein_id AT1G15750.3p transcript_id AT1G15750.3
At1g15750	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.4 CDS Transducin family protein / WD-40 repeat family protein [TAIR10] CDS gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1 gene TPL function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. go_component nucleus|GO:0005634|16763149|IDA go_component cytosol|GO:0005829|18433157|IDA go_process response to auxin stimulus|GO:0009733|18258861|IPI go_process jasmonic acid mediated signaling pathway|GO:0009867|20360743|IMP go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP go_function protein binding|GO:0005515|16461579|IPI go_function protein binding|GO:0005515|20360743|IPI go_function transcription repressor activity|GO:0016564|18258861|IDA go_function protein homodimerization activity|GO:0042803|18258861|IPI product Transducin family protein / WD-40 repeat family protein note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification, jasmonic acid mediated signaling pathway; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 1 (TAIR:AT1G80490.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15750.4p transcript_id AT1G15750.4 protein_id AT1G15750.4p transcript_id AT1G15750.4
At1g15757	chr1:005424242	0.0	C/5424242-5424396,5424480-5424576	AT1G15757.1 CDS Molecular chaperone Hsp40/DnaJ family protein [TAIR10] CDS function Encodes a defensin-like (DEFL) family protein. go_component endomembrane system|GO:0012505||IEA product Molecular chaperone Hsp40/DnaJ family protein note Molecular chaperone Hsp40/DnaJ family protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT2G40995.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15757.1p transcript_id AT1G15757.1 protein_id AT1G15757.1p transcript_id AT1G15757.1
At1g15760	chr1:005425714	0.0	W/5425714-5426322	AT1G15760.1 CDS Sterile alpha motif (SAM) domain-containing protein [TAIR10] CDS gene_syn F7H2.10, F7H2_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Sterile alpha motif (SAM) domain-containing protein note Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G80520.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15760.1p transcript_id AT1G15760.1 protein_id AT1G15760.1p transcript_id AT1G15760.1
At1g15770	chr1:005426892	0.0	C/5426892-5427176,5427296-5427805,5428129-5428215	AT1G15770.1 CDS mediator of RNA polymerase II transcription subunit [TAIR10] CDS gene_syn F7H2.11, F7H2_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G15770.1p transcript_id AT1G15770.1 protein_id AT1G15770.1p transcript_id AT1G15770.1
At1g15772	chr1:005428701	0.0	C/5428701-5428934,5429018-5429092,5429185-5429232	AT1G15772.1 CDS mediator of RNA polymerase II transcription subunit, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G15772.1p transcript_id AT1G15772.1 protein_id AT1G15772.1p transcript_id AT1G15772.1
AT1G15772	chr1:005428701	0.0	C/5428701-5428934,5429018-5429092,5429185-5429232	AT1G15772.2 AT1G15772.2 CDS mediator of RNA polymerase II transcription subunit, putative
AT1G15772	chr1:005428701	0.0	C/5428701-5428934,5429018-5429092,5429185-5429232	AT1G15772.3 AT1G15772.3 CDS mediator of RNA polymerase II transcription subunit, putative
AT1G15772	chr1:005428701	0.0	C/5428701-5428934,5429018-5429092,5429185-5429232	AT1G15772.4 AT1G15772.4 CDS mediator of RNA polymerase II transcription subunit, putative
At1g15780	chr1:005430446	0.0	C/5430446-5430653,5430823-5430911,5431006-5431212,5431357-5431701,5431814-5433097,5433426-5433500,5433623-5433693,5433793-5435178,5435279-5435396,5435573-5435684,5435809-5435921	AT1G15780.1 CDS mediator of RNA polymerase II transcription subunit 15a-like protein [TAIR10] CDS gene_syn F7H2.12, F7H2_12 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). protein_id AT1G15780.1p transcript_id AT1G15780.1 protein_id AT1G15780.1p transcript_id AT1G15780.1
AT1G15780	chr1:005430446	0.0	C/5430446-5430653,5430823-5430911,5431006-5431212,5431357-5431701,5431814-5433097,5433426-5433500,5433623-5433693,5433793-5435178,5435279-5435396,5435573-5435684,5435809-5435929,5436156-5436213	AT1G15780.3 AT1G15780.3 CDS mediator of RNA polymerase II transcription subunit 15a-like protein
AT1G15780	chr1:005430522	0.0	C/5430522-5430911,5431006-5431212,5431357-5431701,5431814-5433097,5433426-5433500,5433623-5433693,5433793-5435178,5435279-5435396,5435573-5435684,5435809-5435921	AT1G15780.2 AT1G15780.2 CDS mediator of RNA polymerase II transcription subunit 15a-like protein
At1g15790	chr1:005438477	0.0	C/5438477-5438521,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.1 CDS mediator of RNA polymerase II transcription subunit 15a-like protein, putative [TAIR10] CDS gene_syn F7H2.13, F7H2_13 product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15790.1p transcript_id AT1G15790.1 protein_id AT1G15790.1p transcript_id AT1G15790.1
At1g15790	chr1:005438477	0.0	C/5438477-5438521,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.2 CDS mediator of RNA polymerase II transcription subunit 15a-like protein, putative [TAIR10] CDS gene_syn F7H2.13, F7H2_13 product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15790.2p transcript_id AT1G15790.2 protein_id AT1G15790.2p transcript_id AT1G15790.2
AT1G15790	chr1:005438477	0.0	C/5438477-5438521,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.4 AT1G15790.4 CDS mediator of RNA polymerase II transcription subunit 15a-like protein, putative
AT1G15790	chr1:005438477	0.0	C/5438477-5438539,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.5 AT1G15790.5 CDS mediator of RNA polymerase II transcription subunit 15a-like protein, putative
AT1G15790	chr1:005438680	0.0	C/5438680-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.3 AT1G15790.3 CDS mediator of RNA polymerase II transcription subunit 15a-like protein, putative
At1g15800	chr1:005441425	0.0	C/5441425-5441526,5441607-5441675,5441753-5441815,5441914-5441967,5443249-5443584	AT1G15800.1 CDS hypothetical protein [TAIR10] CDS gene_syn F7H2.14, F7H2_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 56 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15800.1p transcript_id AT1G15800.1 protein_id AT1G15800.1p transcript_id AT1G15800.1
At1g15810	chr1:005444496	0.0	W/5444496-5445363,5445526-5445608,5445759-5445870,5445980-5446032,5446128-5446271	AT1G15810.1 CDS S15/NS1, RNA-binding protein [TAIR10] CDS gene_syn F7H2.15, F7H2_15 go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component small ribosomal subunit|GO:0015935||ISS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product S15/NS1, RNA-binding protein note S15/NS1, RNA-binding protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: S15/NS1, RNA-binding protein (TAIR:AT1G80620.1); Has 8219 Blast hits to 8219 proteins in 2793 species: Archae - 0; Bacteria - 5437; Metazoa - 107; Fungi - 123; Plants - 505; Viruses - 0; Other Eukaryotes - 2047 (source: NCBI BLink). protein_id AT1G15810.1p transcript_id AT1G15810.1 protein_id AT1G15810.1p transcript_id AT1G15810.1
At1g15820	chr1:005446685	0.0	C/5446685-5447234,5447450-5447676	AT1G15820.1 CDS light harvesting complex photosystem II subunit 6 [TAIR10] CDS gene_syn CHLOROPHYLL PROTEIN 24, CP24, F7H2.16, F7H2_16, LHCB6, light harvesting complex photosystem II subunit 6 gene LHCB6 function Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component thylakoid|GO:0009579|18633119|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component membrane|GO:0016020|17432890|IDA go_component photosystem II antenna complex|GO:0009783|11601979|NAS go_component plastoglobule|GO:0010287|16461379|IDA go_process nonphotochemical quenching|GO:0010196|18381925|IMP go_process photosynthesis|GO:0015979|11340191|NAS go_process photosynthesis|GO:0015979|18381925|IMP go_function chlorophyll binding|GO:0016168||ISS product light harvesting complex photosystem II subunit 6 note light harvesting complex photosystem II subunit 6 (LHCB6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 2316 Blast hits to 2191 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1959; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink). protein_id AT1G15820.1p transcript_id AT1G15820.1 protein_id AT1G15820.1p transcript_id AT1G15820.1
At1g15825	chr1:005448149	0.0	C/5448149-5448529	AT1G15825.1 CDS hydroxyproline-rich glycoprotein family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; Has 11879 Blast hits to 5508 proteins in 628 species: Archae - 56; Bacteria - 1752; Metazoa - 3397; Fungi - 734; Plants - 3913; Viruses - 567; Other Eukaryotes - 1460 (source: NCBI BLink). protein_id AT1G15825.1p transcript_id AT1G15825.1 protein_id AT1G15825.1p transcript_id AT1G15825.1
AT1G15830	chr1:005448726	0.0	W/5448726-5449155,5449348-5450177	AT1G15830.3 AT1G15830.3 CDS hypothetical protein
AT1G15830	chr1:005448726	0.0	W/5448726-5449839,5449930-5450177	AT1G15830.2 AT1G15830.2 CDS hypothetical protein
At1g15830	chr1:005448726	0.0	W/5448726-5450177	AT1G15830.1 CDS hypothetical protein [TAIR10] CDS gene_syn F7H2.23, F7H2_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 165982 Blast hits to 57214 proteins in 2459 species: Archae - 263; Bacteria - 44622; Metazoa - 55751; Fungi - 10656; Plants - 17613; Viruses - 2527; Other Eukaryotes - 34550 (source: NCBI BLink). protein_id AT1G15830.1p transcript_id AT1G15830.1 protein_id AT1G15830.1p transcript_id AT1G15830.1
At1g15840	chr1:005451723	0.0	W/5451723-5451760,5451781-5452123	AT1G15840.1 CDS hypothetical protein [TAIR10] CDS gene_syn F7H2.17, F7H2_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 111484 Blast hits to 29940 proteins in 1985 species: Archae - 153; Bacteria - 40635; Metazoa - 31564; Fungi - 6444; Plants - 10232; Viruses - 1710; Other Eukaryotes - 20746 (source: NCBI BLink). protein_id AT1G15840.1p transcript_id AT1G15840.1 protein_id AT1G15840.1p transcript_id AT1G15840.1
At1g15850	chr1:005453245	0.0	C/5453245-5453442,5453529-5453606,5453723-5453809,5454029-5454088	AT1G15850.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn F7H2.18, F7H2_18 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G80670.1); Has 13036 Blast hits to 6879 proteins in 476 species: Archae - 26; Bacteria - 4384; Metazoa - 3193; Fungi - 2897; Plants - 1043; Viruses - 0; Other Eukaryotes - 1493 (source: NCBI BLink). protein_id AT1G15850.1p transcript_id AT1G15850.1 protein_id AT1G15850.1p transcript_id AT1G15850.1
At1g15860	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456410,5456504-5456569,5456646-5456741	AT1G15860.1 CDS defective in cullin neddylation protein (DUF298) [TAIR10] CDS gene_syn F7H2.19, F7H2_19 go_process biological_process|GO:0008150||ND product Domain of unknown function (DUF298) note CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 784 Blast hits to 784 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 124; Plants - 115; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). protein_id AT1G15860.1p transcript_id AT1G15860.1 protein_id AT1G15860.1p transcript_id AT1G15860.1
At1g15860	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456410,5456504-5456569,5456646-5456741	AT1G15860.2 CDS defective in cullin neddylation protein (DUF298) [TAIR10] CDS gene_syn F7H2.19, F7H2_19 go_process biological_process|GO:0008150||ND product Domain of unknown function (DUF298) note INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 784 Blast hits to 784 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 124; Plants - 115; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). protein_id AT1G15860.2p transcript_id AT1G15860.2 protein_id AT1G15860.2p transcript_id AT1G15860.2
At1g15860	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456437,5456504-5456569,5456646-5456741	AT1G15860.3 CDS defective in cullin neddylation protein (DUF298) [TAIR10] CDS gene_syn F7H2.19, F7H2_19 go_process biological_process|GO:0008150||ND product Domain of unknown function (DUF298) note INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1). protein_id AT1G15860.3p transcript_id AT1G15860.3 protein_id AT1G15860.3p transcript_id AT1G15860.3
At1g15870	chr1:005457153	0.0	W/5457153-5457395,5457666-5457988,5458083-5458245	AT1G15870.1 CDS Mitochondrial glycoprotein family protein [TAIR10] CDS gene_syn F7H2.20, F7H2_20 go_component mitochondrial matrix|GO:0005759||IEA go_component mitochondrial matrix|GO:0005759||ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Mitochondrial glycoprotein family protein note Mitochondrial glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: Mitochondrial glycoprotein family protein (TAIR:AT1G80720.1); Has 432 Blast hits to 432 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 119; Plants - 216; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). protein_id AT1G15870.1p transcript_id AT1G15870.1 protein_id AT1G15870.1p transcript_id AT1G15870.1
At1g15880	chr1:005458718	0.0	C/5458718-5458831,5458954-5459067,5459198-5459362,5459561-5459800,5460051-5460089	AT1G15880.1 CDS golgi snare 11 [TAIR10] CDS gene_syn F7H2.21, F7H2_21, GOS11, atgos11, golgi snare 11 gene GOS11 function Golgi SNARE 11 protein (GOS11) go_component integral to membrane|GO:0016021|10831610|TAS go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS go_process cellular membrane fusion|GO:0006944|10831610|IPI go_function SNARE binding|GO:0000149|11115874|TAS product golgi snare 11 note golgi snare 11 (GOS11); BEST Arabidopsis thaliana protein match is: golgi snare 12 (TAIR:AT2G45200.1); Has 412 Blast hits to 412 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 123; Plants - 99; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). protein_id AT1G15880.1p transcript_id AT1G15880.1 protein_id AT1G15880.1p transcript_id AT1G15880.1
AT1G15880	chr1:005458718	0.0	C/5458718-5458831,5458954-5459067,5459198-5459362,5459561-5459800,5460051-5460089	AT1G15880.2 AT1G15880.2 CDS golgi snare 11
AT1G15880	chr1:005458718	0.0	C/5458718-5458831,5458954-5459067,5459198-5459362,5459561-5459800,5460051-5460089	AT1G15880.3 AT1G15880.3 CDS golgi snare 11
At1g15885	chr1:005460550	0.0	W/5460550-5460690,5460970-5461095	AT1G15885.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15885.1p transcript_id AT1G15885.1 protein_id AT1G15885.1p transcript_id AT1G15885.1
At1g15890	chr1:005461406	0.0	W/5461406-5463961	AT1G15890.1 CDS Disease resistance protein (CC-NBS-LRR class) family [TAIR10] CDS gene_syn F7H2.22, F7H2_22 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_process apoptosis|GO:0006915||IEA go_process defense response|GO:0006952||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_process defense response|GO:0006952||ISS product Disease resistance protein (CC-NBS-LRR class) family note Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12; Bacteria - 829; Metazoa - 2844; Fungi - 202; Plants - 13567; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink). protein_id AT1G15890.1p transcript_id AT1G15890.1 protein_id AT1G15890.1p transcript_id AT1G15890.1
AT1G15890	chr1:005461886	0.0	W/5461886-5463961	AT1G15890.2 AT1G15890.2 CDS Disease resistance protein (CC-NBS-LRR class) family
At1g15900	chr1:005464356	0.0	W/5464356-5464697	AT1G15900.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F7H2.24, F7H2_24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G15900.1p transcript_id AT1G15900.1 protein_id AT1G15900.1p transcript_id AT1G15900.1
At1g15910	chr1:005465951	0.0	W/5465951-5466851,5466933-5467114,5467228-5467317,5467431-5467718,5468073-5468285,5468493-5468723	AT1G15910.1 CDS XH/XS domain-containing protein [TAIR10] CDS gene_syn T24D18.1, T24D18_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product XH/XS domain-containing protein note XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT4G00380.1); Has 48628 Blast hits to 29972 proteins in 1836 species: Archae - 567; Bacteria - 5701; Metazoa - 24120; Fungi - 3416; Plants - 1878; Viruses - 163; Other Eukaryotes - 12783 (source: NCBI BLink). protein_id AT1G15910.1p transcript_id AT1G15910.1 protein_id AT1G15910.1p transcript_id AT1G15910.1
At1g15920	chr1:005469962	0.0	W/5469962-5470822	AT1G15920.1 CDS Polynucleotidyl transferase, ribonuclease H-like superfamily protein [TAIR10] CDS gene_syn T24D18.2, T24D18_2 go_component nucleus|GO:0005634||IEA go_function nucleic acid binding|GO:0003676||IEA go_process RNA modification|GO:0009451||ISS go_function ribonuclease activity|GO:0004540||ISS product Polynucleotidyl transferase, ribonuclease H-like superfamily protein note Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G32070.1); Has 915 Blast hits to 901 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 151; Plants - 388; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). protein_id AT1G15920.1p transcript_id AT1G15920.1 protein_id AT1G15920.1p transcript_id AT1G15920.1
At1g15920	chr1:005469962	0.0	W/5469962-5470822	AT1G15920.2 CDS Polynucleotidyl transferase, ribonuclease H-like superfamily protein [TAIR10] CDS gene_syn T24D18.2, T24D18_2 go_component nucleus|GO:0005634||IEA go_function nucleic acid binding|GO:0003676||IEA go_process RNA modification|GO:0009451||ISS go_function ribonuclease activity|GO:0004540||ISS product Polynucleotidyl transferase, ribonuclease H-like superfamily protein note Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G32070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G15920.2p transcript_id AT1G15920.2 protein_id AT1G15920.2p transcript_id AT1G15920.2
At1g15930	chr1:005471702	0.0	W/5471702-5471709,5472098-5472398,5472520-5472585,5472682-5472741	AT1G15930.1 CDS Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [TAIR10] CDS gene_syn T24D18.3, T24D18_3 go_component cytosolic ribosome|GO:0022626|15734919|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA go_process translation|GO:0006412|11598216|ISS go_function structural constituent of ribosome|GO:0003735|11598216|ISS product Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein note Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G32060.2); Has 1044 Blast hits to 1044 proteins in 336 species: Archae - 248; Bacteria - 0; Metazoa - 315; Fungi - 181; Plants - 131; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). protein_id AT1G15930.1p transcript_id AT1G15930.1 protein_id AT1G15930.1p transcript_id AT1G15930.1
At1g15930	chr1:005471702	0.0	W/5471702-5471709,5472098-5472398,5472520-5472585,5472682-5472741	AT1G15930.2 CDS Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [TAIR10] CDS gene_syn T24D18.3, T24D18_3 go_component cytosolic ribosome|GO:0022626|15734919|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA go_process translation|GO:0006412|11598216|ISS go_function structural constituent of ribosome|GO:0003735|11598216|ISS product Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein note Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G32060.2); Has 1044 Blast hits to 1044 proteins in 336 species: Archae - 248; Bacteria - 0; Metazoa - 315; Fungi - 181; Plants - 131; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). protein_id AT1G15930.2p transcript_id AT1G15930.2 protein_id AT1G15930.2p transcript_id AT1G15930.2
At1g15940	chr1:005473672	0.0	W/5473672-5473785,5474095-5474298,5474414-5474595,5474688-5474814,5474899-5475096,5475218-5475268,5475353-5476060,5476147-5476242,5476328-5476401,5476485-5476536,5476626-5476712,5476801-5476844,5476933-5477007,5477090-5478050	AT1G15940.1 CDS Tudor/PWWP/MBT superfamily protein [TAIR10] CDS gene_syn T24D18.4, T24D18_4 go_function binding|GO:0005488||IEA go_process biological_process|GO:0008150||ND product Tudor/PWWP/MBT superfamily protein note Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G80810.1); Has 113244 Blast hits to 64070 proteins in 2877 species: Archae - 468; Bacteria - 17745; Metazoa - 45816; Fungi - 13599; Plants - 5330; Viruses - 622; Other Eukaryotes - 29664 (source: NCBI BLink). protein_id AT1G15940.1p transcript_id AT1G15940.1 protein_id AT1G15940.1p transcript_id AT1G15940.1
AT1G15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5480837-5480894	AT1G15950.3 AT1G15950.3 CDS cinnamoyl coa reductase 1
AT1G15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5480865-5480889	AT1G15950.4 AT1G15950.4 CDS cinnamoyl coa reductase 1
At1g15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481816,5481872-5481949	AT1G15950.2 CDS cinnamoyl coa reductase 1 [TAIR10] CDS gene_syn ATCCR1, CCR1, CINNAMOYL COA REDUCTASE, IRREGULAR XYLEM 4, IRX4, T24D18.5, T24D18_5, cinnamoyl coa reductase 1 gene CCR1 function Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis. go_component cellular_component|GO:0005575||ND go_process response to cold|GO:0009409|7513083|IEP go_process lignin biosynthetic process|GO:0009809|11430991|IDA go_function cinnamoyl-CoA reductase activity|GO:0016621|11430991|IDA product cinnamoyl coa reductase 1 note cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 11995 Blast hits to 11983 proteins in 1896 species: Archae - 218; Bacteria - 5371; Metazoa - 416; Fungi - 931; Plants - 2539; Viruses - 54; Other Eukaryotes - 2466 (source: NCBI BLink). protein_id AT1G15950.2p transcript_id AT1G15950.2 protein_id AT1G15950.2p transcript_id AT1G15950.2
At1g15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481915	AT1G15950.1 CDS cinnamoyl coa reductase 1 [TAIR10] CDS gene_syn ATCCR1, CCR1, CINNAMOYL COA REDUCTASE, IRREGULAR XYLEM 4, IRX4, T24D18.5, T24D18_5, cinnamoyl coa reductase 1 gene CCR1 function Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis. go_component cellular_component|GO:0005575||ND go_process response to cold|GO:0009409|7513083|IEP go_process lignin biosynthetic process|GO:0009809|11430991|IDA go_function cinnamoyl-CoA reductase activity|GO:0016621|11430991|IDA product cinnamoyl coa reductase 1 note cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 12077 Blast hits to 12065 proteins in 1900 species: Archae - 220; Bacteria - 5385; Metazoa - 413; Fungi - 986; Plants - 2545; Viruses - 54; Other Eukaryotes - 2474 (source: NCBI BLink). protein_id AT1G15950.1p transcript_id AT1G15950.1 protein_id AT1G15950.1p transcript_id AT1G15950.1
AT1G15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481915	AT1G15950.6 AT1G15950.6 CDS cinnamoyl coa reductase 1
AT1G15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480510	AT1G15950.5 AT1G15950.5 CDS cinnamoyl coa reductase 1
AT1G15950	chr1:005479798	0.0	W/5479798-5479977,5480154-5480506,5481708-5481915	AT1G15950.7 AT1G15950.7 CDS cinnamoyl coa reductase 1
At1g15960	chr1:005482202	0.0	C/5482202-5482519,5482612-5482707,5482790-5482921,5482997-5483101,5483198-5483371,5483447-5483516,5483588-5483769,5483847-5483956,5484076-5484180,5484314-5484392,5484480-5484520,5484607-5484685,5484974-5485066	AT1G15960.1 CDS NRAMP metal ion transporter 6 [TAIR10] CDS gene_syn ATNRAMP6, NRAMP metal ion transporter 6, NRAMP6, T24D18.6, T24D18_6 gene NRAMP6 function member of Nramp2 family go_component membrane|GO:0016020||IEA go_process cellular metal ion homeostasis|GO:0006875|11500563|NAS go_process metal ion transport|GO:0030001|11500563|NAS go_process metal ion transport|GO:0030001||ISS go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS go_function metal ion transmembrane transporter activity|GO:0046873|11500563|NAS go_function metal ion transmembrane transporter activity|GO:0046873||ISS product NRAMP metal ion transporter 6 note NRAMP metal ion transporter 6 (NRAMP6); FUNCTIONS IN: inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular metal ion homeostasis, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: natural resistance-associated macrophage protein 1 (TAIR:AT1G80830.1); Has 5518 Blast hits to 5467 proteins in 1679 species: Archae - 118; Bacteria - 4110; Metazoa - 356; Fungi - 271; Plants - 336; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink). protein_id AT1G15960.1p transcript_id AT1G15960.1 protein_id AT1G15960.1p transcript_id AT1G15960.1
At1g15970	chr1:005486544	0.0	C/5486544-5486855,5486959-5487100,5487215-5487298,5487386-5487443,5488032-5488494	AT1G15970.1 CDS DNA glycosylase superfamily protein [TAIR10] CDS gene_syn T24D18.7, T24D18_7 go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA go_component cellular_component|GO:0005575||ND go_process DNA repair|GO:0006281||ISS go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G80850.1); Has 3684 Blast hits to 3684 proteins in 1581 species: Archae - 10; Bacteria - 3170; Metazoa - 10; Fungi - 2; Plants - 164; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink). protein_id AT1G15970.1p transcript_id AT1G15970.1 protein_id AT1G15970.1p transcript_id AT1G15970.1
AT1G15970	chr1:005486544	0.0	C/5486544-5486855,5486959-5487100,5487215-5487298,5487386-5487443,5488032-5488494	AT1G15970.2 AT1G15970.2 CDS DNA glycosylase superfamily protein
At1g15980	chr1:005489314	0.0	W/5489314-5489738,5489837-5489987,5490075-5490265,5490338-5490595,5490675-5490780,5490867-5490952,5491031-5491199	AT1G15980.1 CDS NDH-dependent cyclic electron flow 1 [TAIR10] CDS gene_syn NAD(P)H DEHYDROGENASE SUBUNIT 48, NDF1, NDH-dependent cyclic electron flow 1, NDH48, T24D18.8, T24D18_8 gene NDF1 function encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|18785996|IDA go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IDA go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IMP go_process photosynthetic electron transport in photosystem I|GO:0009773|18785996|IMP product NDH-dependent cyclic electron flow 1 note NDH-dependent cyclic electron flow 1 (NDF1); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 119 Blast hits to 119 proteins in 57 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G15980.1p transcript_id AT1G15980.1 protein_id AT1G15980.1p transcript_id AT1G15980.1
At1g15990	chr1:005491304	0.0	C/5491304-5492023,5492093-5492441,5492527-5492840,5492939-5493151,5493239-5493812,5493890-5493936	AT1G15990.1 CDS cyclic nucleotide gated channel 7 [TAIR10] CDS gene_syn ATCNGC7, CNGC7, T24D18.9, T24D18_9, cyclic nucleotide gated channel 7 gene CNGC7 function member of Cyclic nucleotide gated channel family go_component membrane|GO:0016020||IEA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function ion channel activity|GO:0005216||ISS go_function calmodulin binding|GO:0005516|11782485|ISS go_function cyclic nucleotide binding|GO:0030551||ISS product cyclic nucleotide gated channel 7 note cyclic nucleotide gated channel 7 (CNGC7); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 8 (TAIR:AT1G19780.1); Has 3586 Blast hits to 3408 proteins in 277 species: Archae - 0; Bacteria - 66; Metazoa - 1555; Fungi - 86; Plants - 1001; Viruses - 0; Other Eukaryotes - 878 (source: NCBI BLink). protein_id AT1G15990.1p transcript_id AT1G15990.1 protein_id AT1G15990.1p transcript_id AT1G15990.1
At1g16000	chr1:005494576	0.0	W/5494576-5494744,5495058-5495149	AT1G16000.1 CDS GAG1At protein, putative [TAIR10] CDS gene_syn T24D18.10, T24D18_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16000.1p transcript_id AT1G16000.1 protein_id AT1G16000.1p transcript_id AT1G16000.1
At1g16010	chr1:005495462	0.0	C/5495462-5495692,5495785-5495832,5495920-5496378,5496492-5497082	AT1G16010.1 CDS magnesium transporter 2 [TAIR10] CDS gene_syn MGT2, MRS2-1, T24D18.11, T24D18_11, magnesium transporter 2 gene MGT2 function Transmembrane magnesium transporter. One of nine family members. go_component vacuole|GO:0005773|15539469|IDA go_process metal ion transport|GO:0030001||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_process metal ion transport|GO:0030001||ISS go_function magnesium ion transmembrane transporter activity|GO:0015095|19966073|IDA go_function metal ion transmembrane transporter activity|GO:0046873||ISS product magnesium transporter 2 note magnesium transporter 2 (MGT2); FUNCTIONS IN: magnesium ion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: vacuole, membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter 1 (TAIR:AT1G80900.1); Has 790 Blast hits to 772 proteins in 170 species: Archae - 2; Bacteria - 29; Metazoa - 62; Fungi - 196; Plants - 407; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G16010.1p transcript_id AT1G16010.1 protein_id AT1G16010.1p transcript_id AT1G16010.1
At1g16010	chr1:005495462	0.0	C/5495462-5495692,5495785-5495832,5495920-5496378,5496492-5497082	AT1G16010.2 CDS magnesium transporter 2 [TAIR10] CDS gene_syn MGT2, MRS2-1, T24D18.11, T24D18_11, magnesium transporter 2 gene MGT2 function Transmembrane magnesium transporter. One of nine family members. go_process metal ion transport|GO:0030001||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_process metal ion transport|GO:0030001||ISS go_function magnesium ion transmembrane transporter activity|GO:0015095|19966073|IDA go_function metal ion transmembrane transporter activity|GO:0046873||ISS product magnesium transporter 2 note magnesium transporter 2 (MGT2); FUNCTIONS IN: magnesium ion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter 1 (TAIR:AT1G80900.1); Has 790 Blast hits to 772 proteins in 170 species: Archae - 2; Bacteria - 29; Metazoa - 62; Fungi - 196; Plants - 407; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G16010.2p transcript_id AT1G16010.2 protein_id AT1G16010.2p transcript_id AT1G16010.2
At1g16010	chr1:005495462	0.0	C/5495462-5495692,5495785-5495832,5495920-5496378,5496492-5497082	AT1G16010.3 CDS magnesium transporter 2 [TAIR10] CDS gene_syn MGT2, MRS2-1, T24D18.11, T24D18_11, magnesium transporter 2 gene MGT2 function Transmembrane magnesium transporter. One of nine family members. go_process metal ion transport|GO:0030001||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_process metal ion transport|GO:0030001||ISS go_function magnesium ion transmembrane transporter activity|GO:0015095|19966073|IDA go_function metal ion transmembrane transporter activity|GO:0046873||ISS product magnesium transporter 2 note magnesium transporter 2 (MGT2); FUNCTIONS IN: magnesium ion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: transmembrane transport, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter 1 (TAIR:AT1G80900.1). protein_id AT1G16010.3p transcript_id AT1G16010.3 protein_id AT1G16010.3p transcript_id AT1G16010.3
At1g16020	chr1:005498633	0.0	W/5498633-5498808,5498986-5499079,5499192-5499375,5499475-5499513,5499641-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.1 CDS vacuolar fusion protein (DUF1712) [TAIR10] CDS gene_syn T24D18.12, T24D18_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1712) note Protein of unknown function (DUF1712); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712, fungi (InterPro:IPR013176); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1); Has 187 Blast hits to 185 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 3; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT1G16020.1p transcript_id AT1G16020.1 protein_id AT1G16020.1p transcript_id AT1G16020.1
At1g16020	chr1:005498633	0.0	W/5498633-5498808,5498986-5499079,5499192-5499375,5499641-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.2 CDS vacuolar fusion protein (DUF1712) [TAIR10] CDS gene_syn T24D18.12, T24D18_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1712) note Protein of unknown function (DUF1712); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712, fungi (InterPro:IPR013176); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1); Has 188 Blast hits to 186 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 3; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT1G16020.2p transcript_id AT1G16020.2 protein_id AT1G16020.2p transcript_id AT1G16020.2
AT1G16020	chr1:005499589	0.0	W/5499589-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.3 AT1G16020.3 CDS vacuolar fusion protein (DUF1712)
AT1G16020	chr1:005499712	0.0	W/5499712-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.4 AT1G16020.4 CDS vacuolar fusion protein (DUF1712)
At1g16022	chr1:005501396	0.0	C/5501396-5501646,5501736-5501856	AT1G16022.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G16022.1p transcript_id AT1G16022.1 protein_id AT1G16022.1p transcript_id AT1G16022.1
At1g16025	chr1:005501505	0.0	W/5501505-5501648,5501762-5501959	AT1G16025.1 CDS hypothetical protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16025.1p transcript_id AT1G16025.1 protein_id AT1G16025.1p transcript_id AT1G16025.1
At1g16030	chr1:005502386	0.0	C/5502386-5504326	AT1G16030.1 CDS heat shock protein 70B [TAIR10] CDS gene_syn Hsp70b, T24D18.14, T24D18_14, heat shock protein 70B gene Hsp70b go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component membrane|GO:0016020|17432890|IDA go_function ATP binding|GO:0005524||IEA go_component cytosol|GO:0005829|11402207|TAS go_process protein folding|GO:0006457|11402207|TAS go_process response to heat|GO:0009408|11402207|IEP product heat shock protein 70B note heat shock protein 70B (Hsp70b); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: cytosol, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (TAIR:AT3G12580.1); Has 33913 Blast hits to 33562 proteins in 4835 species: Archae - 164; Bacteria - 16454; Metazoa - 3784; Fungi - 1785; Plants - 1262; Viruses - 309; Other Eukaryotes - 10155 (source: NCBI BLink). protein_id AT1G16030.1p transcript_id AT1G16030.1 protein_id AT1G16030.1p transcript_id AT1G16030.1
AT1G16040	chr1:005504747	0.0	W/5504747-5504929,5505015-5505080,5505312-5505354,5505569-5505623,5505821-5505869,5505979-5506046,5506125-5506233,5506349-5506405,5506519-5506536	AT1G16040.3 AT1G16040.3 CDS phosphatidylinositol-glycan biosynthesis class F-like protein
At1g16040	chr1:005504747	0.0	W/5504747-5504929,5505015-5505080,5505312-5505354,5505569-5505623,5505821-5505869,5505979-5506046,5506125-5506233,5506349-5506456	AT1G16040.1 CDS phosphatidylinositol-glycan biosynthesis class F-like protein [TAIR10] CDS gene_syn AT1G16050, T24D18.15, T24D18_15 go_component endoplasmic reticulum membrane|GO:0005789||IEA go_component integral to membrane|GO:0016021||IEA go_process GPI anchor biosynthetic process|GO:0006506||IEA go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 280 Blast hits to 280 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 111; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G16040.1p transcript_id AT1G16040.1 protein_id AT1G16040.1p transcript_id AT1G16040.1
AT1G16040	chr1:005504747	0.0	W/5504747-5504929,5505015-5505080,5505312-5505354,5505989-5506046,5506125-5506233,5506349-5506456	AT1G16040.4 AT1G16040.4 CDS phosphatidylinositol-glycan biosynthesis class F-like protein
AT1G16040	chr1:005505074	0.0	W/5505074-5505080,5505569-5505623,5505821-5505869,5505979-5506046,5506125-5506233,5506349-5506456	AT1G16040.2 AT1G16040.2 CDS phosphatidylinositol-glycan biosynthesis class F-like protein
At1g16060	chr1:005508563	0.0	W/5508563-5508753,5508834-5508916,5509147-5509155,5509594-5509682,5509908-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.1 CDS ARIA-interacting double AP2 domain protein [TAIR10] CDS gene_syn ADAP, ARIA-interacting double AP2 domain protein, T24D18.16, T24D18_16 gene ADAP function Encodes ADAP, an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth. go_component nucleus|GO:0005634|10948255|IC go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to water deprivation|GO:0009414|19390821|IMP go_process response to salt stress|GO:0009651|19390821|IMP go_process response to abscisic acid stimulus|GO:0009737|19390821|IMP go_process organ morphogenesis|GO:0009887|8742707|ISS go_process organ morphogenesis|GO:0009887|9636071|ISS go_process negative regulation of seed germination|GO:0010187|19390821|IMP go_process regulation of growth|GO:0040008|19390821|IMP go_function DNA binding|GO:0003677|9192694|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10948255|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10948255|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product ARIA-interacting double AP2 domain protein note ARIA-interacting double AP2 domain protein (ADAP); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G79700.2); Has 6422 Blast hits to 4728 proteins in 256 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 6319; Viruses - 2; Other Eukaryotes - 64 (source: NCBI BLink). protein_id AT1G16060.1p transcript_id AT1G16060.1 protein_id AT1G16060.1p transcript_id AT1G16060.1
AT1G16060	chr1:005509083	0.0	W/5509083-5509155,5509594-5509682,5509908-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.3 AT1G16060.3 CDS ARIA-interacting double AP2 domain protein
At1g16060	chr1:005509938	0.0	W/5509938-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.2 CDS ARIA-interacting double AP2 domain protein [TAIR10] CDS gene_syn ADAP, ARIA-interacting double AP2 domain protein, T24D18.16, T24D18_16 gene ADAP function Encodes ADAP, an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth. go_component nucleus|GO:0005634|10948255|IC go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to water deprivation|GO:0009414|19390821|IMP go_process response to salt stress|GO:0009651|19390821|IMP go_process response to abscisic acid stimulus|GO:0009737|19390821|IMP go_process organ morphogenesis|GO:0009887|8742707|ISS go_process organ morphogenesis|GO:0009887|9636071|ISS go_process negative regulation of seed germination|GO:0010187|19390821|IMP go_process regulation of growth|GO:0040008|19390821|IMP go_function DNA binding|GO:0003677|9192694|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10948255|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10948255|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product ARIA-interacting double AP2 domain protein note ARIA-interacting double AP2 domain protein (ADAP); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G79700.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16060.2p transcript_id AT1G16060.2 protein_id AT1G16060.2p transcript_id AT1G16060.2
AT1G16060	chr1:005509938	0.0	W/5509938-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.4 AT1G16060.4 CDS ARIA-interacting double AP2 domain protein
AT1G16060	chr1:005509938	0.0	W/5509938-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.5 AT1G16060.5 CDS ARIA-interacting double AP2 domain protein
AT1G16060	chr1:005509938	0.0	W/5509938-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.6 AT1G16060.6 CDS ARIA-interacting double AP2 domain protein
AT1G16060	chr1:005510218	0.0	W/5510218-5510323,5511146-5511609	AT1G16060.7 AT1G16060.7 CDS ARIA-interacting double AP2 domain protein
At1g16070	chr1:005511899	0.0	C/5511899-5511974,5512077-5512144,5512224-5512316,5512387-5512476,5512567-5512663,5512756-5512811,5512904-5513080,5513161-5513275,5513358-5513779	AT1G16070.1 CDS tubby like protein 8 [TAIR10] CDS gene_syn AtTLP8, T24D18.17, T24D18_17, TLP8, tubby like protein 8 gene TLP8 function Member of TLP family go_component cellular_component|GO:0005575||ND go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product tubby like protein 8 note tubby like protein 8 (TLP8); CONTAINS InterPro DOMAIN/s: Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 842 Blast hits to 842 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 340; Fungi - 21; Plants - 410; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). protein_id AT1G16070.1p transcript_id AT1G16070.1 protein_id AT1G16070.1p transcript_id AT1G16070.1
At1g16070	chr1:005512170	0.0	C/5512170-5512316,5512387-5512476,5512567-5512663,5512756-5512811,5512904-5513080,5513161-5513275,5513358-5513779	AT1G16070.2 CDS tubby like protein 8 [TAIR10] CDS gene_syn AtTLP8, T24D18.17, T24D18_17, TLP8, tubby like protein 8 gene TLP8 function Member of TLP family go_component cellular_component|GO:0005575||ND go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product tubby like protein 8 note tubby like protein 8 (TLP8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 6 (TAIR:AT1G47270.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16070.2p transcript_id AT1G16070.2 protein_id AT1G16070.2p transcript_id AT1G16070.2
AT1G16070	chr1:005512555	0.0	C/5512555-5512663,5512756-5512811,5512904-5513080,5513161-5513275,5513358-5513779	AT1G16070.3 AT1G16070.3 CDS tubby like protein 8
At1g16080	chr1:005514394	0.0	W/5514394-5514742,5514909-5515126,5515216-5515344,5515419-5515550,5515648-5515761	AT1G16080.1 CDS nuclear protein [TAIR10] CDS gene_syn T24D18.18, T24D18_18 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component apoplast|GO:0048046|18538804|IDA product unknown protein note unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G16080.1p transcript_id AT1G16080.1 protein_id AT1G16080.1p transcript_id AT1G16080.1
At1g16090	chr1:005516259	0.0	W/5516259-5516862,5516908-5517068,5517111-5517182,5517264-5517380	AT1G16090.1 CDS wall associated kinase-like 7 [TAIR10] CDS gene_syn T24D18.19, T24D18_19, WAKL7, wall associated kinase-like 7 gene WAKL7 function WAK-like kinase go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA product wall associated kinase-like 7 note wall associated kinase-like 7 (WAKL7); FUNCTIONS IN: protein serine/threonine kinase activity; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695); BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G79670.1); Has 767 Blast hits to 757 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 767; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16090.1p transcript_id AT1G16090.1 protein_id AT1G16090.1p transcript_id AT1G16090.1
At1g16100	chr1:005518062	0.0	C/5518062-5518134	AT1G16100.1 [TAIR10] tRNA gene_syn 51681.TRNA-LYS-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Lys (anticodon: CTT) transcript_id AT1G16100.1
At1g16110	chr1:005518381	0.0	W/5518381-5519344,5519429-5519545,5519623-5520470	AT1G16110.1 CDS wall associated kinase-like 6 [TAIR10] CDS gene_syn T24D18.30, T24D18_30, WAKL6, wall associated kinase-like 6 gene WAKL6 function WAK-like kinase go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function kinase activity|GO:0016301||ISS product wall associated kinase-like 6 note wall associated kinase-like 6 (WAKL6); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall associated kinase-like 1 (TAIR:AT1G16120.1); Has 122937 Blast hits to 120828 proteins in 4420 species: Archae - 135; Bacteria - 14043; Metazoa - 45685; Fungi - 10517; Plants - 33921; Viruses - 506; Other Eukaryotes - 18130 (source: NCBI BLink). protein_id AT1G16110.1p transcript_id AT1G16110.1 protein_id AT1G16110.1p transcript_id AT1G16110.1
At1g16120	chr1:005522639	0.0	W/5522639-5523581,5523657-5523785,5523863-5524983	AT1G16120.1 CDS wall associated kinase-like 1 [TAIR10] CDS gene_syn T24D18.20, T24D18_20, WAKL1, wall associated kinase-like 1 gene WAKL1 function wall-associated kinase like go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_component cell wall|GO:0005618||ISS go_process protein amino acid phosphorylation|GO:0006468||ISS go_function kinase activity|GO:0016301||ISS product wall associated kinase-like 1 note wall associated kinase-like 1 (WAKL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane, cell wall; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall associated kinase-like 5 (TAIR:AT1G16160.1); Has 123437 Blast hits to 121647 proteins in 4379 species: Archae - 141; Bacteria - 14104; Metazoa - 45195; Fungi - 10752; Plants - 34405; Viruses - 501; Other Eukaryotes - 18339 (source: NCBI BLink). protein_id AT1G16120.1p transcript_id AT1G16120.1 protein_id AT1G16120.1p transcript_id AT1G16120.1
At1g16130	chr1:005525634	0.0	W/5525634-5526543,5526627-5526749,5526834-5528047	AT1G16130.1 CDS wall associated kinase-like 2 [TAIR10] CDS gene_syn T24D18.21, T24D18_21, WAKL2, wall associated kinase-like 2 gene WAKL2 function wall-associated kinase like go_component integral to membrane|GO:0016021||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function kinase activity|GO:0016301||ISS product wall associated kinase-like 2 note wall associated kinase-like 2 (WAKL2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: integral to membrane; EXPRESSED IN: stem, cotyledon, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall associated kinase-like 4 (TAIR:AT1G16150.1); Has 122559 Blast hits to 120935 proteins in 4599 species: Archae - 125; Bacteria - 14250; Metazoa - 44921; Fungi - 10430; Plants - 34238; Viruses - 502; Other Eukaryotes - 18093 (source: NCBI BLink). protein_id AT1G16130.1p transcript_id AT1G16130.1 protein_id AT1G16130.1p transcript_id AT1G16130.1
At1g16140	chr1:005529378	0.0	W/5529378-5529849,5529922-5530041,5530129-5531255	AT1G16140.1 CDS wall-associated receptor kinase-like protein [TAIR10] pseudogene
At1g16150	chr1:005532415	0.0	W/5532415-5533348,5533434-5533556,5533649-5534874	AT1G16150.1 CDS wall associated kinase-like 4 [TAIR10] CDS gene_syn T24D18.23, T24D18_23, WAKL4, wall associated kinase-like 4 gene WAKL4 function Encodes a cell-wall associated kinase like protein of the receptor-like kinase (RLK) superfamily. Likely involved in Arabidopsis root mineral responses to Zn2+, Cu2+, K+, Na+ and Ni+. go_component plasma membrane|GO:0005886|16286448|IDA go_component plant-type cell wall|GO:0009505|16286448|IDA go_component cell surface|GO:0009986|16286448|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process response to zinc ion|GO:0010043|16286448|IEP go_process response to nickel ion|GO:0010045|16286448|IEP go_process response to cadmium ion|GO:0046686|16286448|IEP go_function kinase activity|GO:0016301||ISS product wall associated kinase-like 4 note wall associated kinase-like 4 (WAKL4); CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: wall associated kinase-like 2 (TAIR:AT1G16130.1); Has 121654 Blast hits to 119929 proteins in 4418 species: Archae - 143; Bacteria - 13875; Metazoa - 44623; Fungi - 10480; Plants - 34034; Viruses - 478; Other Eukaryotes - 18021 (source: NCBI BLink). protein_id AT1G16150.1p transcript_id AT1G16150.1 protein_id AT1G16150.1p transcript_id AT1G16150.1
AT1G16150	chr1:005532415	0.0	W/5532415-5533348,5533434-5533556,5533649-5534877	AT1G16150.2 AT1G16150.2 CDS wall associated kinase-like 4
At1g16160	chr1:005535913	0.0	W/5535913-5536864,5536941-5537063,5537149-5538269	AT1G16160.1 CDS wall associated kinase-like 5 [TAIR10] CDS gene_syn T24D18.24, T24D18_24, WAKL5, wall associated kinase-like 5 gene WAKL5 function WAK-like kinase go_component chloroplast|GO:0009507||IEA go_component integral to membrane|GO:0016021||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function kinase activity|GO:0016301||ISS product wall associated kinase-like 5 note wall associated kinase-like 5 (WAKL5); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: wall associated kinase-like 1 (TAIR:AT1G16120.1); Has 123134 Blast hits to 120241 proteins in 4306 species: Archae - 131; Bacteria - 13824; Metazoa - 45906; Fungi - 10588; Plants - 34048; Viruses - 501; Other Eukaryotes - 18136 (source: NCBI BLink). protein_id AT1G16160.1p transcript_id AT1G16160.1 protein_id AT1G16160.1p transcript_id AT1G16160.1
At1g16170	chr1:005538874	0.0	C/5538874-5539152	AT1G16170.1 CDS ephrin-A3 protein [TAIR10] CDS gene_syn T24D18.25, T24D18_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16170.1p transcript_id AT1G16170.1 protein_id AT1G16170.1p transcript_id AT1G16170.1
At1g16180	chr1:005540905	0.0	W/5540905-5541088,5541163-5541402,5541484-5541595,5541675-5541849,5541948-5542188,5542384-5542670	AT1G16180.1 CDS Serinc-domain containing serine and sphingolipid biosynthesis protein [TAIR10] CDS gene_syn T24D18.26, T24D18_26 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS go_function molecular_function|GO:0003674||ND product Serinc-domain containing serine and sphingolipid biosynthesis protein note Serinc-domain containing serine and sphingolipid biosynthesis protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G06170.1); Has 780 Blast hits to 770 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 127; Plants - 141; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). protein_id AT1G16180.1p transcript_id AT1G16180.1 protein_id AT1G16180.1p transcript_id AT1G16180.1
At1g16180	chr1:005540905	0.0	W/5540905-5541088,5541163-5541402,5541484-5541595,5541675-5541849,5541948-5542188,5542384-5542670	AT1G16180.2 CDS Serinc-domain containing serine and sphingolipid biosynthesis protein [TAIR10] CDS gene_syn T24D18.26, T24D18_26 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS go_function molecular_function|GO:0003674||ND product Serinc-domain containing serine and sphingolipid biosynthesis protein note Serinc-domain containing serine and sphingolipid biosynthesis protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G06170.1). protein_id AT1G16180.2p transcript_id AT1G16180.2 protein_id AT1G16180.2p transcript_id AT1G16180.2
At1g16190	chr1:005543267	0.0	W/5543267-5543332,5543606-5543767,5544064-5544102,5544192-5544230,5544317-5544390,5544484-5544661,5544739-5544861,5544950-5545015,5545219-5545266,5545344-5545453,5545599-5545683,5545776-5545892	AT1G16190.1 CDS Rad23 UV excision repair protein family [TAIR10] CDS gene_syn RAD23A, RADIATION SENSITIVE23A gene RAD23A function Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. go_process nucleotide-excision repair|GO:0006289||IEA go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161||IEA go_component nucleus|GO:0005634|20086187|IDA go_process base-excision repair|GO:0006284||ISS go_function damaged DNA binding|GO:0003684||ISS go_function ubiquitin binding|GO:0043130|20086187|IDA go_function proteasome binding|GO:0070628|20086187|IDA product Rad23 UV excision repair protein family note RADIATION SENSITIVE23A (RAD23A); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G79650.2); Has 9140 Blast hits to 4719 proteins in 640 species: Archae - 2; Bacteria - 43; Metazoa - 4062; Fungi - 1252; Plants - 2281; Viruses - 138; Other Eukaryotes - 1362 (source: NCBI BLink). protein_id AT1G16190.1p transcript_id AT1G16190.1 protein_id AT1G16190.1p transcript_id AT1G16190.1
AT1G16190	chr1:005543609	0.0	W/5543609-5543767,5544064-5544102,5544192-5544230,5544317-5544390,5544484-5544661,5544739-5544861,5544950-5545015,5545219-5545266,5545344-5545453,5545599-5545683,5545776-5545892	AT1G16190.2 AT1G16190.2 CDS Rad23 UV excision repair protein family
At1g16210	chr1:005546352	0.0	C/5546352-5546378,5546497-5546616,5546890-5547447	AT1G16210.1 CDS coiled-coil protein [TAIR10] CDS gene_syn F3O9.2, F3O9_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI BLink). protein_id AT1G16210.1p transcript_id AT1G16210.1 protein_id AT1G16210.1p transcript_id AT1G16210.1
At1g16220	chr1:005548653	0.0	W/5548653-5548907,5549098-5549466,5549543-5549660,5549746-5549969,5550044-5550553	AT1G16220.1 CDS Protein phosphatase 2C family protein [TAIR10] CDS gene_syn F3O9.3, F3O9_3 go_component plasma membrane|GO:0005886|17317660|IDA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function catalytic activity|GO:0003824||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Protein phosphatase 2C family protein note Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G79630.1); Has 5547 Blast hits to 5545 proteins in 292 species: Archae - 2; Bacteria - 12; Metazoa - 1332; Fungi - 643; Plants - 2421; Viruses - 5; Other Eukaryotes - 1132 (source: NCBI BLink). protein_id AT1G16220.1p transcript_id AT1G16220.1 protein_id AT1G16220.1p transcript_id AT1G16220.1
At1g16225	chr1:005551041	0.0	C/5551041-5551157,5551261-5551305,5551400-5551500,5551591-5551784,5551886-5552028	AT1G16225.1 CDS Target SNARE coiled-coil domain protein [TAIR10] CDS go_function molecular_function|GO:0003674||ND product Target SNARE coiled-coil domain protein note Target SNARE coiled-coil domain protein; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: Target SNARE coiled-coil domain protein (TAIR:AT1G16230.1); Has 135 Blast hits to 135 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 37; Plants - 88; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G16225.1p transcript_id AT1G16225.1 protein_id AT1G16225.1p transcript_id AT1G16225.1
AT1G16225	chr1:005551041	0.0	C/5551041-5551157,5551261-5551305,5551400-5551500,5551591-5551784,5551886-5552100	AT1G16225.2 AT1G16225.2 CDS Target SNARE coiled-coil domain protein
AT1G16225	chr1:005551577	0.0	C/5551577-5551784,5551886-5552100	AT1G16225.3 AT1G16225.3 CDS Target SNARE coiled-coil domain protein
At1g16230	chr1:005553467	0.0	C/5553467-5553532,5553618-5553718,5553812-5554011,5554110-5554324	AT1G16230.1 CDS Target SNARE coiled-coil domain protein [TAIR10] CDS gene_syn F3O9.34, F3O9_34 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Target SNARE coiled-coil domain protein note Target SNARE coiled-coil domain protein; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 184 Blast hits to 184 proteins in 71 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 66; Plants - 93; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G16230.1p transcript_id AT1G16230.1 protein_id AT1G16230.1p transcript_id AT1G16230.1
At1g16240	chr1:005555183	0.0	C/5555183-5555314,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.1 CDS syntaxin of plants 51 [TAIR10] CDS gene_syn ATSYP51, F3O9.4, F3O9_4, SYP51, syntaxin of plants 51 gene SYP51 function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. go_component vacuole|GO:0005773|15539469|IDA go_component endosome membrane|GO:0010008|11115874|NAS go_component endosome membrane|GO:0010008|11115874|TAS go_process vesicle-mediated transport|GO:0016192|11115874|TAS go_function SNAP receptor activity|GO:0005484|11115874|TAS product syntaxin of plants 51 note syntaxin of plants 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 837 Blast hits to 837 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 265; Fungi - 234; Plants - 241; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). protein_id AT1G16240.1p transcript_id AT1G16240.1 protein_id AT1G16240.1p transcript_id AT1G16240.1
At1g16240	chr1:005555183	0.0	C/5555183-5555314,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.2 CDS syntaxin of plants 51 [TAIR10] CDS gene_syn ATSYP51, F3O9.4, F3O9_4, SYP51, syntaxin of plants 51 gene SYP51 function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. go_component vacuole|GO:0005773|15539469|IDA go_component endosome membrane|GO:0010008|11115874|NAS go_component endosome membrane|GO:0010008|11115874|TAS go_process vesicle-mediated transport|GO:0016192|11115874|TAS go_function SNAP receptor activity|GO:0005484|11115874|TAS product syntaxin of plants 51 note syntaxin of plants 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16240.2p transcript_id AT1G16240.2 protein_id AT1G16240.2p transcript_id AT1G16240.2
AT1G16240	chr1:005555183	0.0	C/5555183-5555314,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.4 AT1G16240.4 CDS syntaxin of plants 51
At1g16240	chr1:005555193	0.0	C/5555193-5555312,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.3 CDS syntaxin of plants 51 [TAIR10] CDS gene_syn ATSYP51, F3O9.4, F3O9_4, SYP51, syntaxin of plants 51 gene SYP51 function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. go_component endosome membrane|GO:0010008|11115874|NAS go_component endosome membrane|GO:0010008|11115874|TAS go_process vesicle-mediated transport|GO:0016192|11115874|TAS go_function SNAP receptor activity|GO:0005484|11115874|TAS product syntaxin of plants 51 note syntaxin of plants 51 (SYP51); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 550 Blast hits to 550 proteins in 163 species: Archae - 0; Bacteria - 4; Metazoa - 169; Fungi - 163; Plants - 161; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). protein_id AT1G16240.3p transcript_id AT1G16240.3 protein_id AT1G16240.3p transcript_id AT1G16240.3
At1g16250	chr1:005557214	0.0	W/5557214-5557215,5557370-5557945,5558124-5558697	AT1G16250.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F3O9.5, F3O9_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G63220.2); Has 9062 Blast hits to 5094 proteins in 277 species: Archae - 4; Bacteria - 620; Metazoa - 6949; Fungi - 23; Plants - 1110; Viruses - 34; Other Eukaryotes - 322 (source: NCBI BLink). protein_id AT1G16250.1p transcript_id AT1G16250.1 protein_id AT1G16250.1p transcript_id AT1G16250.1
AT1G16250	chr1:005557214	0.0	W/5557214-5557215,5557370-5557945,5558124-5558697	AT1G16250.2 AT1G16250.2 CDS Galactose oxidase/kelch repeat superfamily protein
At1g16260	chr1:005559708	0.0	C/5559708-5560915,5560984-5561088,5561169-5562018	AT1G16260.1 CDS Wall-associated kinase family protein [TAIR10] CDS gene_syn F3O9.6, F3O9_6 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301||ISS product Wall-associated kinase family protein note Wall-associated kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), EGF calcium-binding (InterPro:IPR013091), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G79670.1); Has 123075 Blast hits to 119967 proteins in 4481 species: Archae - 119; Bacteria - 13868; Metazoa - 46954; Fungi - 10147; Plants - 33759; Viruses - 489; Other Eukaryotes - 17739 (source: NCBI BLink). protein_id AT1G16260.1p transcript_id AT1G16260.1 protein_id AT1G16260.1p transcript_id AT1G16260.1
At1g16260	chr1:005559708	0.0	C/5559708-5560915,5560984-5561088,5561169-5562018	AT1G16260.2 CDS Wall-associated kinase family protein [TAIR10] CDS gene_syn F3O9.6, F3O9_6 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301||ISS product Wall-associated kinase family protein note Wall-associated kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), EGF calcium-binding (InterPro:IPR013091), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G79670.1). protein_id AT1G16260.2p transcript_id AT1G16260.2 protein_id AT1G16260.2p transcript_id AT1G16260.2
AT1G16260	chr1:005559708	0.0	C/5559708-5560915,5561011-5561088,5561169-5562018	AT1G16260.3 AT1G16260.3 CDS Wall-associated kinase family protein
At1g16270	chr1:005563890	0.0	W/5563890-5566376,5566449-5566529,5566710-5566862,5566988-5567151,5567262-5567409,5567482-5567604,5567675-5567762,5567946-5568145	AT1G16270.1 CDS Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain [TAIR10] CDS gene_syn F3O9.7, F3O9_7 go_process protein amino acid phosphorylation|GO:0006468||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function protein kinase activity|GO:0004672||ISS go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS product Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain note Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G79570.1); Has 120346 Blast hits to 118920 proteins in 4807 species: Archae - 116; Bacteria - 12493; Metazoa - 46290; Fungi - 10609; Plants - 32462; Viruses - 473; Other Eukaryotes - 17903 (source: NCBI BLink). protein_id AT1G16270.1p transcript_id AT1G16270.1 protein_id AT1G16270.1p transcript_id AT1G16270.1
At1g16270	chr1:005563890	0.0	W/5563890-5566376,5566449-5566529,5566710-5566862,5566988-5567151,5567262-5567409,5567482-5567604,5567675-5567762,5567946-5568145	AT1G16270.2 CDS Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain [TAIR10] CDS gene_syn F3O9.7, F3O9_7 go_process protein amino acid phosphorylation|GO:0006468||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function protein kinase activity|GO:0004672||ISS go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS product Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain note Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G79570.1). protein_id AT1G16270.2p transcript_id AT1G16270.2 protein_id AT1G16270.2p transcript_id AT1G16270.2
AT1G16270	chr1:005563890	0.0	W/5563890-5566376,5566449-5566529,5566710-5566862,5566988-5567151,5567262-5567409,5567482-5567604,5567675-5567762,5567946-5568145	AT1G16270.3 AT1G16270.3 CDS Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
At1g16280	chr1:005568482	0.0	C/5568482-5568634,5568815-5568913,5569014-5569095,5569180-5569383,5569464-5569786,5569873-5570487	AT1G16280.1 CDS RNA helicase 36 [TAIR10] CDS gene_syn Arabidopsis thaliana RNA helicase 36, AtRH36, F3O9.8, F3O9_8, RH36, RNA helicase 36, SLOW WALKER 3, SWA3 gene RH36 go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_component nucleus|GO:0005634|20378763|IDA go_process rRNA processing|GO:0006364|20378763|IMP go_process embryo sac development|GO:0009553|20378763|IMP go_process post-embryonic development|GO:0009791|20378763|IMP go_function ATP-dependent helicase activity|GO:0008026||ISS product RNA helicase 36 note RNA helicase 36 (RH36); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: post-embryonic development, embryo sac development, rRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 43946 Blast hits to 42938 proteins in 3095 species: Archae - 969; Bacteria - 21832; Metazoa - 6240; Fungi - 4948; Plants - 2606; Viruses - 36; Other Eukaryotes - 7315 (source: NCBI BLink). protein_id AT1G16280.1p transcript_id AT1G16280.1 protein_id AT1G16280.1p transcript_id AT1G16280.1
At1g16290	chr1:005570938	0.0	C/5570938-5570965,5571061-5571186,5571276-5571389,5571483-5571592,5571705-5571758,5571873-5572042,5572248-5572309,5572510-5572629,5572741-5572857,5572951-5573081,5573200-5573250,5573362-5573538	AT1G16290.1 CDS transglycosylase [TAIR10] CDS gene_syn F3O9.9, F3O9_9 go_component vacuole|GO:0005773|14760709|IDA go_component chloroplast|GO:0009507|15028209|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). protein_id AT1G16290.1p transcript_id AT1G16290.1 protein_id AT1G16290.1p transcript_id AT1G16290.1
AT1G16290	chr1:005570938	0.0	C/5570938-5570965,5571061-5571186,5571276-5571389,5571483-5571592,5571705-5571758,5571873-5572042,5572248-5572309,5572510-5572629,5572741-5572857,5572951-5573081,5573200-5573250,5573362-5573565	AT1G16290.2 AT1G16290.2 CDS transglycosylase
At1g16300	chr1:005574433	0.0	W/5574433-5574525,5574837-5574907,5575013-5575080,5575165-5575203,5575336-5575436,5575661-5575773,5575911-5576010,5576157-5576303,5576406-5576466,5576574-5576671,5576753-5576895,5577005-5577088,5577169-5577258,5577352-5577406	AT1G16300.1 CDS glyceraldehyde-3-phosphate dehydrogenase of plastid 2 [TAIR10] CDS gene_syn F3O9.10, F3O9_10, GAPCP-2, glyceraldehyde-3-phosphate dehydrogenase of plastid 2 gene GAPCP-2 function Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism and sterility. GAPCps are important for the synthesis of serine in roots. go_component plastid|GO:0009536|15533878|ISS go_component plastid|GO:0009536|19675149|IDA go_process carbohydrate metabolic process|GO:0005975|19675149|IMP go_process glycolysis|GO:0006096||ISS go_process primary root development|GO:0080022|19675149|IMP go_process amino acid homeostasis|GO:0080144|19675149|IMP go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365|19675149|IMP go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS product glyceraldehyde-3-phosphate dehydrogenase of plastid 2 note glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (GAPCP-2); CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (TAIR:AT1G79530.1); Has 25238 Blast hits to 25227 proteins in 6343 species: Archae - 51; Bacteria - 10898; Metazoa - 2382; Fungi - 2852; Plants - 3834; Viruses - 0; Other Eukaryotes - 5221 (source: NCBI BLink). protein_id AT1G16300.1p transcript_id AT1G16300.1 protein_id AT1G16300.1p transcript_id AT1G16300.1
At1g16310	chr1:005578435	0.0	W/5578435-5578708,5579235-5579347,5579434-5579679,5579769-5579849,5579925-5580155,5580244-5580585	AT1G16310.1 CDS Cation efflux family protein [TAIR10] CDS gene_syn F3O9.11, F3O9_11 go_component membrane|GO:0016020||IEA go_process cation transport|GO:0006812||IEA go_process transmembrane transport|GO:0055085||IEA go_function cation transmembrane transporter activity|GO:0008324||IEA go_component membrane|GO:0016020||ISS go_process cation transport|GO:0006812||ISS go_function cation transmembrane transporter activity|GO:0008324||ISS product Cation efflux family protein note Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1); Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163; Bacteria - 4116; Metazoa - 44; Fungi - 281; Plants - 207; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink). protein_id AT1G16310.1p transcript_id AT1G16310.1 protein_id AT1G16310.1p transcript_id AT1G16310.1
AT1G16310	chr1:005579300	0.0	W/5579300-5579347,5579434-5579679,5579769-5579849,5579925-5580155,5580244-5580585	AT1G16310.2 AT1G16310.2 CDS Cation efflux family protein
At1g16320	chr1:005580951	0.0	W/5580951-5581282,5581443-5581932	AT1G16320.1 CDS plant/protein (DUF2358) [TAIR10] CDS gene_syn F3O9.12, F3O9_12 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Uncharacterized conserved protein (DUF2358) note Uncharacterized conserved protein (DUF2358); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT1G79510.2); Has 274 Blast hits to 274 proteins in 79 species: Archae - 0; Bacteria - 78; Metazoa - 80; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G16320.1p transcript_id AT1G16320.1 protein_id AT1G16320.1p transcript_id AT1G16320.1
At1g16330	chr1:005582387	0.0	C/5582387-5582522,5582614-5582792,5582886-5582984,5583089-5583148,5583228-5583389,5583479-5583568,5583697-5583819,5583898-5584182,5584395-5584449,5584693-5584783,5584884-5584929,5585046-5585100,5585354-5585411,5585503-5585557,5585791-5585845,5586036-5586071,5586227-5586323,5586410-5586461,5586555-5586615,5586758-5586793,5586890-5586950,5587031-5587070,5587377-5587391	AT1G16330.1 CDS cyclin b3;1 [TAIR10] CDS gene_syn CYCB3;1, F3O9.13, F3O9_13, cyclin b3;1 gene CYCB3;1 function core cell cycle genes go_component nucleus|GO:0005634||IEA go_process regulation of cell cycle|GO:0051726||ISS go_function cyclin-dependent protein kinase activity|GO:0004693||ISS product cyclin b3;1 note cyclin b3;1 (CYCB3;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;3 (TAIR:AT1G20610.1); Has 4427 Blast hits to 4424 proteins in 376 species: Archae - 0; Bacteria - 0; Metazoa - 2128; Fungi - 557; Plants - 1053; Viruses - 34; Other Eukaryotes - 655 (source: NCBI BLink). protein_id AT1G16330.1p transcript_id AT1G16330.1 protein_id AT1G16330.1p transcript_id AT1G16330.1
At1g16340	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590235-5590338,5590431-5590469	AT1G16340.4 CDS Aldolase superfamily protein [TAIR10] CDS gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14 gene ATKDSA2 function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500). go_component cytoplasm|GO:0005737||IEA go_component endomembrane system|GO:0012505||IEA go_component cytoplasm|GO:0005737||ISS go_process metabolic process|GO:0008152||ISS go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS product Aldolase superfamily protein note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79500.4). protein_id AT1G16340.4p transcript_id AT1G16340.4 protein_id AT1G16340.4p transcript_id AT1G16340.4
At1g16340	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590241-5590338,5590431-5590469	AT1G16340.1 CDS Aldolase superfamily protein [TAIR10] CDS gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14 gene ATKDSA2 function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500). go_component cytoplasm|GO:0005737||IEA go_component endomembrane system|GO:0012505||IEA go_component cytoplasm|GO:0005737||ISS go_process metabolic process|GO:0008152||ISS go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS product Aldolase superfamily protein note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79500.4); Has 7899 Blast hits to 7897 proteins in 2055 species: Archae - 64; Bacteria - 4967; Metazoa - 4; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2806 (source: NCBI BLink). protein_id AT1G16340.1p transcript_id AT1G16340.1 protein_id AT1G16340.1p transcript_id AT1G16340.1
At1g16340	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590241-5590338,5590431-5590469	AT1G16340.2 CDS Aldolase superfamily protein [TAIR10] CDS gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14 gene ATKDSA2 function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500). go_component cytoplasm|GO:0005737||IEA go_component endomembrane system|GO:0012505||IEA go_component cytoplasm|GO:0005737||ISS go_process metabolic process|GO:0008152||ISS go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS product Aldolase superfamily protein note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79500.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16340.2p transcript_id AT1G16340.2 protein_id AT1G16340.2p transcript_id AT1G16340.2
At1g16340	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590241-5590338,5590431-5590469	AT1G16340.3 CDS Aldolase superfamily protein [TAIR10] CDS gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14 gene ATKDSA2 function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500). go_component cytoplasm|GO:0005737||IEA go_component endomembrane system|GO:0012505||IEA go_component cytoplasm|GO:0005737||ISS go_process metabolic process|GO:0008152||ISS go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS product Aldolase superfamily protein note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79500.4); Has 7899 Blast hits to 7897 proteins in 2055 species: Archae - 64; Bacteria - 4967; Metazoa - 4; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2806 (source: NCBI BLink). protein_id AT1G16340.3p transcript_id AT1G16340.3 protein_id AT1G16340.3p transcript_id AT1G16340.3
At1g16350	chr1:005590951	0.0	W/5590951-5591353,5591469-5592064,5592171-5592350,5592444-5592701,5592801-5592872	AT1G16350.1 CDS Aldolase-type TIM barrel family protein [TAIR10] CDS gene_syn F3O9.15, F3O9_15 go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function catalytic activity|GO:0003824||IEA go_function IMP dehydrogenase activity|GO:0003938||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND go_process GMP biosynthetic process|GO:0006177||ISS go_function IMP dehydrogenase activity|GO:0003938||ISS product Aldolase-type TIM barrel family protein note Aldolase-type TIM barrel family protein; FUNCTIONS IN: IMP dehydrogenase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: oxidation reduction, GMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79470.1); Has 13531 Blast hits to 12775 proteins in 2707 species: Archae - 178; Bacteria - 7353; Metazoa - 466; Fungi - 180; Plants - 86; Viruses - 2; Other Eukaryotes - 5266 (source: NCBI BLink). protein_id AT1G16350.1p transcript_id AT1G16350.1 protein_id AT1G16350.1p transcript_id AT1G16350.1
AT1G16360	chr1:005593493	0.0	C/5593493-5593550,5593672-5593961,5594097-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595133,5595706-5595793	AT1G16360.2 AT1G16360.2 CDS LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
At1g16360	chr1:005593493	0.0	C/5593493-5593550,5593672-5593961,5594097-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595179	AT1G16360.1 CDS LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [TAIR10] CDS gene_syn F3O9.16, F3O9_16 go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS go_process biological_process|GO:0008150||ND product LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein note LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 5 (TAIR:AT1G79450.1); Has 865 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 234; Plants - 160; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink). protein_id AT1G16360.1p transcript_id AT1G16360.1 protein_id AT1G16360.1p transcript_id AT1G16360.1
AT1G16360	chr1:005593605	0.0	C/5593605-5593961,5594097-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595179	AT1G16360.4 AT1G16360.4 CDS LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
AT1G16360	chr1:005594043	0.0	C/5594043-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595179	AT1G16360.3 AT1G16360.3 CDS LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
AT1G16360	chr1:005594043	0.0	C/5594043-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595179	AT1G16360.5 AT1G16360.5 CDS LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
At1g16370	chr1:005596762	0.0	W/5596762-5598327	AT1G16370.1 CDS organic cation/carnitine transporter 6 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, ATOCT6, F3O9.17, F3O9_17, OCT6, organic cation/carnitine transporter 6 gene OCT6 go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product organic cation/carnitine transporter 6 note organic cation/carnitine transporter 6 (OCT6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter5 (TAIR:AT1G79410.1); Has 15766 Blast hits to 15675 proteins in 1589 species: Archae - 347; Bacteria - 7462; Metazoa - 3764; Fungi - 2418; Plants - 1153; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink). protein_id AT1G16370.1p transcript_id AT1G16370.1 protein_id AT1G16370.1p transcript_id AT1G16370.1
At1g16380	chr1:005598453	0.0	C/5598453-5598732,5598873-5599813,5599903-5600880,5601209-5601367	AT1G16380.1 CDS Cation/hydrogen exchanger family protein [TAIR10] CDS gene_syn ATCHX1, CATION EXCHANGER 1, CHX1, F3O9.18, F3O9_18 gene ATCHX1 function member of Putative Na+/H+ antiporter family go_component integral to membrane|GO:0016021||IEA go_process cation transport|GO:0006812|11500563|IC go_function monovalent cation:hydrogen antiporter activity|GO:0005451|11500563|NAS go_function sodium:hydrogen antiporter activity|GO:0015385||ISS product Cation/hydrogen exchanger family protein note ATCHX1; FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 2 (TAIR:AT1G79400.1); Has 3057 Blast hits to 3030 proteins in 956 species: Archae - 198; Bacteria - 2123; Metazoa - 0; Fungi - 129; Plants - 509; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). protein_id AT1G16380.1p transcript_id AT1G16380.1 protein_id AT1G16380.1p transcript_id AT1G16380.1
At1g16390	chr1:005602921	0.0	W/5602921-5604477	AT1G16390.1 CDS organic cation/carnitine transporter 3 [TAIR10] CDS gene_syn 3-Oct, ATOCT3, F3O9.19, F3O9_19, organic cation/carnitine transporter 3 gene 3-Oct go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product organic cation/carnitine transporter 3 note organic cation/carnitine transporter 3 (3-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 2 (TAIR:AT1G79360.1); Has 22920 Blast hits to 22877 proteins in 2010 species: Archae - 415; Bacteria - 11427; Metazoa - 4445; Fungi - 4126; Plants - 1629; Viruses - 0; Other Eukaryotes - 878 (source: NCBI BLink). protein_id AT1G16390.1p transcript_id AT1G16390.1 protein_id AT1G16390.1p transcript_id AT1G16390.1
At1g16400	chr1:005605231	0.0	W/5605231-5606199,5606377-5606650,5606911-5607281	AT1G16400.1 CDS cytochrome P450, family 79, subfamily F, polypeptide 2 [TAIR10] CDS gene_syn cytochrome P450, family 79, subfamily F, polypeptide 2, CYP79F2, CYTOCHROME P450 79F2, F3O9.20, F3O9_20 gene CYP79F2 function Encodes cytochrome P450 CYP79F2. go_component endoplasmic reticulum|GO:0005783|11226190|IDA go_process glucosinolate biosynthetic process|GO:0019761|12609033|IMP go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12609033|IDA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 79, subfamily F, polypeptide 2 note cytochrome P450, family 79, subfamily F, polypeptide 2 (CYP79F2); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome p450 79f1 (TAIR:AT1G16410.1); Has 27578 Blast hits to 27450 proteins in 1508 species: Archae - 44; Bacteria - 2254; Metazoa - 10521; Fungi - 5390; Plants - 8520; Viruses - 3; Other Eukaryotes - 846 (source: NCBI BLink). protein_id AT1G16400.1p transcript_id AT1G16400.1 protein_id AT1G16400.1p transcript_id AT1G16400.1
At1g16410	chr1:005608862	0.0	W/5608862-5609833,5609945-5610218,5610748-5611118	AT1G16410.1 CDS cytochrome p450 79f1 [TAIR10] CDS gene_syn BUS1, BUSHY 1, CYP79F1, F3O9.21, F3O9_21, SPS1, SUPERSHOOT 1, cytochrome p450 79f1 gene CYP79F1 function member of CYP79F go_component endoplasmic reticulum|GO:0005783|11226190|IDA go_process glucosinolate biosynthetic process|GO:0019761|12609033|IMP go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12609033|IDA product cytochrome p450 79f1 note cytochrome p450 79f1 (CYP79F1); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 79, subfamily F, polypeptide 2 (TAIR:AT1G16400.1); Has 27252 Blast hits to 27093 proteins in 1494 species: Archae - 44; Bacteria - 2170; Metazoa - 10673; Fungi - 5027; Plants - 8510; Viruses - 0; Other Eukaryotes - 828 (source: NCBI BLink). protein_id AT1G16410.1p transcript_id AT1G16410.1 protein_id AT1G16410.1p transcript_id AT1G16410.1
At1g16410	chr1:005608862	0.0	W/5608862-5609833,5609945-5610244	AT1G16410.2 CDS cytochrome p450 79f1 [TAIR10] CDS gene_syn BUS1, BUSHY 1, CYP79F1, F3O9.21, F3O9_21, SPS1, SUPERSHOOT 1, cytochrome p450 79f1 gene CYP79F1 function member of CYP79F go_component endoplasmic reticulum|GO:0005783|11226190|IDA go_process glucosinolate biosynthetic process|GO:0019761|12609033|IMP go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12609033|IDA product cytochrome p450 79f1 note cytochrome p450 79f1 (CYP79F1); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 79, subfamily F, polypeptide 2 (TAIR:AT1G16400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16410.2p transcript_id AT1G16410.2 protein_id AT1G16410.2p transcript_id AT1G16410.2
At1g16420	chr1:005612304	0.0	C/5612304-5613100,5613481-5613829	AT1G16420.1 CDS metacaspase 8 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA METACASPASE 8, ATMC8, F3O9.22, F3O9_22, MC8, metacaspase 8 gene MC8 function Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0. go_component cellular_component|GO:0005575||ND go_process response to oxidative stress|GO:0006979|17998208|IEP go_process response to oxidative stress|GO:0006979|17998208|IMP go_process response to UV-C|GO:0010225|17998208|IEP go_process hydrogen peroxide-mediated programmed cell death|GO:0010421|17998208|IMP go_process programmed cell death|GO:0012501|17998208|IMP go_process response to hydrogen peroxide|GO:0042542|17998208|IMP go_function cysteine-type endopeptidase activity|GO:0004197|17998208|IDA product metacaspase 8 note metacaspase 8 (MC8); CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 7 (TAIR:AT1G79310.1); Has 1067 Blast hits to 1064 proteins in 261 species: Archae - 3; Bacteria - 286; Metazoa - 0; Fungi - 258; Plants - 304; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink). protein_id AT1G16420.1p transcript_id AT1G16420.1 protein_id AT1G16420.1p transcript_id AT1G16420.1
At1g16430	chr1:005614632	0.0	W/5614632-5614787,5614877-5614942,5615167-5615397	AT1G16430.1 CDS Surfeit locus protein 5 subunit 22 of Mediator complex [TAIR10] CDS gene_syn F3O9.23, F3O9_23 go_component mediator complex|GO:0016592||IEA go_process regulation of transcription from RNA polymerase II promoter|GO:0006357||IEA go_function RNA polymerase II transcription mediator activity|GO:0016455||IEA product Surfeit locus protein 5 subunit 22 of Mediator complex note Surfeit locus protein 5 subunit 22 of Mediator complex; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med22 (InterPro:IPR009332); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 5 subunit 22 of Mediator complex (TAIR:AT1G07950.1); Has 238 Blast hits to 238 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 12; Plants - 53; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G16430.1p transcript_id AT1G16430.1 protein_id AT1G16430.1p transcript_id AT1G16430.1
At1g16440	chr1:005615841	0.0	W/5615841-5615879,5616100-5616713,5616786-5617632	AT1G16440.1 CDS root hair specific 3 [TAIR10] CDS gene_syn F3O9.24, F3O9_24, RHS4, ROOT HAIR SPECIFIC 4, RSH3, root hair specific 3 gene RSH3 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301|13678909|ISS go_function kinase activity|GO:0016301||ISS product root hair specific 3 note root hair specific 3 (RSH3); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC kinase 1.7 (TAIR:AT1G79250.2); Has 101577 Blast hits to 89577 proteins in 2716 species: Archae - 38; Bacteria - 12727; Metazoa - 39279; Fungi - 11275; Plants - 19035; Viruses - 382; Other Eukaryotes - 18841 (source: NCBI BLink). protein_id AT1G16440.1p transcript_id AT1G16440.1 protein_id AT1G16440.1p transcript_id AT1G16440.1
At1g16445	chr1:005617811	0.0	W/5617811-5618012,5618143-5618206,5618436-5618634,5618722-5618795,5618909-5619064,5619174-5619303	AT1G16445.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS go_component chloroplast|GO:0009507|18431481|IDA go_process biological_process|GO:0008150||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Putative rRNA methylase (InterPro:IPR010719); Has 1208 Blast hits to 1208 proteins in 621 species: Archae - 2; Bacteria - 1139; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). protein_id AT1G16445.1p transcript_id AT1G16445.1 protein_id AT1G16445.1p transcript_id AT1G16445.1
At1g16450	chr1:005619471	0.0	C/5619471-5619543	AT1G16450.1 [TAIR10] tRNA gene_syn 51361.TRNA-ARG-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Arg (anticodon: CCG) transcript_id AT1G16450.1
At1g16460	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.1 CDS rhodanese homologue 2 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2, RDH2, ST2, STR2, SULFURTRANSFERASE 2, rhodanese homologue 2 gene RDH2 function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase. go_process sulfate transport|GO:0008272||IEA go_component cytoplasm|GO:0005737|10951223|IDA go_component cytosol|GO:0005829|10734224|IDA go_process aging|GO:0007568||ISS go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA product rhodanese homologue 2 note rhodanese homologue 2 (RDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1); Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162; Bacteria - 3582; Metazoa - 248; Fungi - 148; Plants - 95; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink). protein_id AT1G16460.1p transcript_id AT1G16460.1 protein_id AT1G16460.1p transcript_id AT1G16460.1
At1g16460	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.3 CDS rhodanese homologue 2 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2, RDH2, ST2, STR2, SULFURTRANSFERASE 2, rhodanese homologue 2 gene RDH2 function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase. go_process sulfate transport|GO:0008272||IEA go_component cytoplasm|GO:0005737|10951223|IDA go_component cytosol|GO:0005829|10734224|IDA go_process aging|GO:0007568||ISS go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA product rhodanese homologue 2 note rhodanese homologue 2 (RDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16460.3p transcript_id AT1G16460.3 protein_id AT1G16460.3p transcript_id AT1G16460.3
At1g16460	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.4 CDS rhodanese homologue 2 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2, RDH2, ST2, STR2, SULFURTRANSFERASE 2, rhodanese homologue 2 gene RDH2 function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase. go_process sulfate transport|GO:0008272||IEA go_component cytoplasm|GO:0005737|10951223|IDA go_component cytosol|GO:0005829|10734224|IDA go_process aging|GO:0007568||ISS go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA product rhodanese homologue 2 note rhodanese homologue 2 (RDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1). protein_id AT1G16460.4p transcript_id AT1G16460.4 protein_id AT1G16460.4p transcript_id AT1G16460.4
At1g16460	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5622050,5622479-5622481	AT1G16460.2 CDS rhodanese homologue 2 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2, RDH2, ST2, STR2, SULFURTRANSFERASE 2, rhodanese homologue 2 gene RDH2 function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase. go_process sulfate transport|GO:0008272||IEA go_component cytoplasm|GO:0005737|10951223|IDA go_component cytosol|GO:0005829|10734224|IDA go_process aging|GO:0007568||ISS go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA product rhodanese homologue 2 note rhodanese homologue 2 (RDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1); Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162; Bacteria - 3582; Metazoa - 248; Fungi - 148; Plants - 95; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink). protein_id AT1G16460.2p transcript_id AT1G16460.2 protein_id AT1G16460.2p transcript_id AT1G16460.2
AT1G16460	chr1:005620153	0.0	C/5620153-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.6 AT1G16460.6 CDS rhodanese homologue 2
AT1G16460	chr1:005620153	0.0	C/5620153-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5622050,5622479-5622481	AT1G16460.5 AT1G16460.5 CDS rhodanese homologue 2
At1g16470	chr1:005623122	0.0	W/5623122-5623162,5623241-5623317,5623401-5623465,5623589-5623635,5623728-5623803,5623891-5623958,5624266-5624335,5624619-5624704,5624871-5624933,5625228-5625293,5625391-5625439	AT1G16470.1 CDS proteasome subunit PAB1 [TAIR10] CDS gene_syn F3O9.27, F3O9_27, PAB1, proteasome subunit PAB1 gene PAB1 function Encodes 20S proteasome subunit PAB1 (PAB1). go_component cytosolic ribosome|GO:0022626|15821981|IDA go_function endopeptidase activity|GO:0004175||IEA go_function threonine-type endopeptidase activity|GO:0004298||IEA go_component proteasome complex|GO:0000502|20516081|IDA go_component proteasome core complex|GO:0005839|9373170|TAS go_component proteasome core complex|GO:0005839|9611183|TAS go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS go_process response to zinc ion|GO:0010043|19880396|IEP go_function peptidase activity|GO:0008233||ISS product proteasome subunit PAB1 note proteasome subunit PAB1 (PAB1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to zinc ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT1G79210.3); Has 6828 Blast hits to 6827 proteins in 505 species: Archae - 887; Bacteria - 62; Metazoa - 2417; Fungi - 1560; Plants - 881; Viruses - 0; Other Eukaryotes - 1021 (source: NCBI BLink). protein_id AT1G16470.1p transcript_id AT1G16470.1 protein_id AT1G16470.1p transcript_id AT1G16470.1
At1g16470	chr1:005623122	0.0	W/5623122-5623162,5623241-5623317,5623401-5623465,5623589-5623635,5623728-5623803,5623891-5623958,5624266-5624335,5624619-5624704,5624871-5624933,5625228-5625293,5625391-5625439	AT1G16470.2 CDS proteasome subunit PAB1 [TAIR10] CDS gene_syn F3O9.27, F3O9_27, PAB1, proteasome subunit PAB1 gene PAB1 function Encodes 20S proteasome subunit PAB1 (PAB1). go_component cytosolic ribosome|GO:0022626|15821981|IDA go_function endopeptidase activity|GO:0004175||IEA go_function threonine-type endopeptidase activity|GO:0004298||IEA go_component proteasome complex|GO:0000502|20516081|IDA go_component proteasome core complex|GO:0005839|9373170|TAS go_component proteasome core complex|GO:0005839|9611183|TAS go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS go_process response to zinc ion|GO:0010043|19880396|IEP go_function peptidase activity|GO:0008233||ISS product proteasome subunit PAB1 note proteasome subunit PAB1 (PAB1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to zinc ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT1G79210.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16470.2p transcript_id AT1G16470.2 protein_id AT1G16470.2p transcript_id AT1G16470.2
At1g16480	chr1:005625742	0.0	C/5625742-5625794,5625872-5628605	AT1G16480.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F3O9.28, F3O9_28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1). protein_id AT1G16480.2p transcript_id AT1G16480.2 protein_id AT1G16480.2p transcript_id AT1G16480.2
At1g16480	chr1:005625843	0.0	C/5625843-5628656	AT1G16480.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F3O9.28, F3O9_28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 59612 Blast hits to 13645 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 112; Fungi - 34; Plants - 58832; Viruses - 0; Other Eukaryotes - 630 (source: NCBI BLink). protein_id AT1G16480.1p transcript_id AT1G16480.1 protein_id AT1G16480.1p transcript_id AT1G16480.1
At1g16489	chr1:005629216	0.0	W/5629216-5629302,5629982-5630118,5630227-5630314,5630389-5630488	AT1G16489.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G16490 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G16489.1
At1g16490	chr1:005629859	0.0	C/5629859-5630414,5630495-5630624,5630706-5630844	AT1G16490.1 CDS myb domain protein 58 [TAIR10] CDS gene_syn ATMYB58, F3O9.29, F3O9_29, MYB DOMAIN PROTEIN 58, MYB58, myb domain protein 58 gene MYB58 function Member of the R2R3 factor gene family. go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process lignin biosynthetic process|GO:0009809|19122102|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|19122102|IDA product myb domain protein 58 note myb domain protein 58 (MYB58); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 63 (TAIR:AT1G79180.1); Has 8863 Blast hits to 8152 proteins in 473 species: Archae - 0; Bacteria - 3; Metazoa - 752; Fungi - 456; Plants - 5848; Viruses - 6; Other Eukaryotes - 1798 (source: NCBI BLink). protein_id AT1G16490.1p transcript_id AT1G16490.1 protein_id AT1G16490.1p transcript_id AT1G16490.1
AT1G16490	chr1:005629859	0.0	C/5629859-5630476	AT1G16490.2 AT1G16490.2 CDS myb domain protein 58
At1g16500	chr1:005639079	0.0	W/5639079-5639306,5639444-5639995	AT1G16500.1 CDS filamentous hemagglutinin transporter, putative [TAIR10] CDS gene_syn F3O9.30, F3O9_30 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16500.1p transcript_id AT1G16500.1 protein_id AT1G16500.1p transcript_id AT1G16500.1
At1g16510	chr1:005644784	0.0	C/5644784-5645227	AT1G16510.1 CDS SAUR-like auxin-responsive protein family [TAIR10] CDS gene_syn F3O9.31, F3O9_31 go_process response to auxin stimulus|GO:0009733||ISS go_function molecular_function|GO:0003674||ND product SAUR-like auxin-responsive protein family note SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT3G12830.1); Has 1122 Blast hits to 1120 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1121; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G16510.1p transcript_id AT1G16510.1 protein_id AT1G16510.1p transcript_id AT1G16510.1
At1g16515	chr1:005647605	0.0	C/5647605-5647709	AT1G16515.1 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16515.1p transcript_id AT1G16515.1 protein_id AT1G16515.1p transcript_id AT1G16515.1
AT1G16515	chr1:005647605	0.0	C/5647605-5647868	AT1G16515.2 AT1G16515.2 CDS transmembrane protein, putative
At1g16520	chr1:005648904	0.0	W/5648904-5649173,5649613-5649681,5649784-5649837,5649983-5650040,5650125-5650199,5650280-5650513,5650596-5650641,5650744-5650822,5650906-5650998	AT1G16520.1 CDS interactor of constitutive active ROPs protein [TAIR10] CDS gene_syn F3O9.32 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G16520.1p transcript_id AT1G16520.1 protein_id AT1G16520.1p transcript_id AT1G16520.1
At1g16530	chr1:005651470	0.0	C/5651470-5651784,5652657-5652839	AT1G16530.1 CDS ASYMMETRIC LEAVES 2-like 9 [TAIR10] CDS gene_syn ASL9, ASYMMETRIC LEAVES 2-like 9, F3O9.33, F3O9_33, LBD3, LOB DOMAIN-CONTAINING PROTEIN 3 gene ASL9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product ASYMMETRIC LEAVES 2-like 9 note ASYMMETRIC LEAVES 2-like 9 (ASL9); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT2G30130.1); Has 986 Blast hits to 981 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16530.1p transcript_id AT1G16530.1 protein_id AT1G16530.1p transcript_id AT1G16530.1
At1g16540	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664288,5664358-5664590,5664661-5664794,5664897-5665007,5665103-5665201	AT1G16540.1 CDS molybdenum cofactor sulfurase (LOS5) (ABA3) [TAIR10] CDS gene_syn ABA DEFICIENT 3, ABA3, ACI2, ALTERED CHLOROPLAST IMPORT 2, ATABA3, F19K19.13, F19K19_13, LOS5, LOW OSMOTIC STRESS 5, MOLYBDENUM COFACTOR SULFURASE, SIR3, SIRTINOL RESISTANT 3 gene ABA3 function Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. <i>sir</i> loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer. Also involved in protein import into chloroplasts. go_component cellular_component|GO:0005575||ND go_process response to stress|GO:0006950|11549764|IMP go_process response to osmotic stress|GO:0006970|11549764|IMP go_process response to heat|GO:0009408|15923322|IMP go_process response to cold|GO:0009409|11549764|IMP go_process response to salt stress|GO:0009651|11549764|IMP go_process abscisic acid biosynthetic process|GO:0009688|8893542|IMP go_process auxin mediated signaling pathway|GO:0009734|15710899|IMP go_process stomatal movement|GO:0010118|16959575|IMP go_process sugar mediated signaling pathway|GO:0010182|12663220|TAS go_process molybdenum incorporation into molybdenum-molybdopterin complex|GO:0018315|11553608|IDA go_process defense response to bacterium|GO:0042742|16959575|IMP go_process protein import into chloroplast stroma|GO:0045037|20374530|IMP go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265|11553608|IDA go_function selenocysteine lyase activity|GO:0009000|15561708|IDA product molybdenum cofactor sulfurase (LOS5) (ABA3) note ABA DEFICIENT 3 (ABA3); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), MOSC, N-terminal beta barrel (InterPro:IPR005303), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1); Has 7940 Blast hits to 7904 proteins in 1914 species: Archae - 94; Bacteria - 5396; Metazoa - 390; Fungi - 394; Plants - 292; Viruses - 1; Other Eukaryotes - 1373 (source: NCBI BLink). protein_id AT1G16540.1p transcript_id AT1G16540.1 protein_id AT1G16540.1p transcript_id AT1G16540.1
AT1G16540	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664288,5664358-5664590,5664661-5664794,5664897-5665007,5665103-5665201	AT1G16540.5 AT1G16540.5 CDS molybdenum cofactor sulfurase (LOS5) (ABA3)
AT1G16540	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664288,5664358-5664649	AT1G16540.3 AT1G16540.3 CDS molybdenum cofactor sulfurase (LOS5) (ABA3)
AT1G16540	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664590,5664661-5664794,5664897-5665007,5665103-5665201	AT1G16540.2 AT1G16540.2 CDS molybdenum cofactor sulfurase (LOS5) (ABA3)
AT1G16540	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664590,5664661-5664794,5664897-5665007,5665103-5665201	AT1G16540.4 AT1G16540.4 CDS molybdenum cofactor sulfurase (LOS5) (ABA3)
At1g16550	chr1:005665907	0.0	W/5665907-5668209	AT1G16550.1 [TAIR10] pseudogene
At1g16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.1 CDS Per1-like family protein [TAIR10] CDS gene_syn F19K19.12, F19K19_12 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Per1-like family protein note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 343 Blast hits to 337 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 158; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G16560.1p transcript_id AT1G16560.1 protein_id AT1G16560.1p transcript_id AT1G16560.1
At1g16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.2 CDS Per1-like family protein [TAIR10] CDS gene_syn F19K19.12, F19K19_12 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Per1-like family protein note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16560.2p transcript_id AT1G16560.2 protein_id AT1G16560.2p transcript_id AT1G16560.2
At1g16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.3 CDS Per1-like family protein [TAIR10] CDS gene_syn F19K19.12, F19K19_12 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Per1-like family protein note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16560.3p transcript_id AT1G16560.3 protein_id AT1G16560.3p transcript_id AT1G16560.3
AT1G16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.5 AT1G16560.5 CDS Per1-like family protein
AT1G16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.6 AT1G16560.6 CDS Per1-like family protein
AT1G16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.7 AT1G16560.7 CDS Per1-like family protein
AT1G16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.8 AT1G16560.8 CDS Per1-like family protein
AT1G16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.9 AT1G16560.9 CDS Per1-like family protein
At1g16560	chr1:005669234	0.0	W/5669234-5669413,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.4 CDS Per1-like family protein [TAIR10] CDS gene_syn F19K19.12, F19K19_12 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Per1-like family protein note Per1-like family protein; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16560.4p transcript_id AT1G16560.4 protein_id AT1G16560.4p transcript_id AT1G16560.4
At1g16570	chr1:005670763	0.0	C/5670763-5670789,5670880-5671008,5671102-5671177,5671250-5671302,5671421-5671593,5671658-5671800,5671889-5671994,5672085-5672148,5672256-5672322,5672433-5672522,5672617-5672765,5672862-5672999,5673091-5673146,5673223-5673256,5673331-5673423	AT1G16570.1 CDS UDP-Glycosyltransferase superfamily protein [TAIR10] CDS gene_syn F19K19.11, F19K19_11 go_component mitochondrion|GO:0005739||IEA go_process biosynthetic process|GO:0009058||IEA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-Glycosyltransferase superfamily protein note UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); Has 834 Blast hits to 816 proteins in 377 species: Archae - 30; Bacteria - 354; Metazoa - 141; Fungi - 141; Plants - 50; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink). protein_id AT1G16570.1p transcript_id AT1G16570.1 protein_id AT1G16570.1p transcript_id AT1G16570.1
At1g16570	chr1:005670763	0.0	C/5670763-5670789,5670880-5671177,5671250-5671302,5671421-5671593,5671658-5671800,5671889-5671994,5672085-5672148,5672256-5672322,5672433-5672522,5672617-5672765,5672862-5672999,5673091-5673146,5673223-5673256,5673331-5673423	AT1G16570.2 CDS UDP-Glycosyltransferase superfamily protein [TAIR10] CDS gene_syn F19K19.11, F19K19_11 go_component mitochondrion|GO:0005739||IEA go_process biosynthetic process|GO:0009058||IEA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-Glycosyltransferase superfamily protein note UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G16570.2p transcript_id AT1G16570.2 protein_id AT1G16570.2p transcript_id AT1G16570.2
At1g16590	chr1:005673886	0.0	W/5673886-5673913,5674005-5674085,5674160-5674272,5674362-5674551,5674655-5674890	AT1G16590.1 CDS DNA-binding HORMA family protein [TAIR10] CDS gene_syn ATREV7, F19K19.10, F19K19_10, REV7 gene REV7 function putative translesion synthesis polymerase zeta subunit, homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS). go_component cellular_component|GO:0005575||ND go_process response to DNA damage stimulus|GO:0006974|15908599|IMP go_process mitotic cell cycle spindle assembly checkpoint|GO:0007094||ISS go_process response to UV-B|GO:0010224|15908599|IMP go_function DNA binding|GO:0003677||ISS product DNA-binding HORMA family protein note REV7; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); Has 307 Blast hits to 307 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 86; Plants - 49; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). protein_id AT1G16590.1p transcript_id AT1G16590.1 protein_id AT1G16590.1p transcript_id AT1G16590.1
AT1G16590	chr1:005674034	0.0	W/5674034-5674085,5674160-5674272,5674362-5674551,5674655-5674890	AT1G16590.2 AT1G16590.2 CDS DNA-binding HORMA family protein
At1g16600	chr1:005675169	0.0	W/5675169-5675433	AT1G16600.1 [TAIR10] pseudogene
At1g16610	chr1:005675925	0.0	C/5675925-5676006,5676282-5676319,5676429-5676495,5676728-5676877,5677017-5677082,5677154-5677376,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.3 CDS arginine/serine-rich 45 [TAIR10] CDS gene_syn ARGININE/SERINE-RICH PROTEIN SR45, F19K19.9, F19K19_9, RNPS1, SR45, arginine/serine-rich 45 gene SR45 function Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth. go_component nucleoplasm|GO:0005654|14675452|IDA go_component nuclear speck|GO:0016607|14675452|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10593939|IPI go_process RNA splicing|GO:0008380|16807317|NAS go_process sugar mediated signaling pathway|GO:0010182|20699397|IMP go_function RNA binding|GO:0003723||ISS go_function protein binding|GO:0005515|10593939|IPI product arginine/serine-rich 45 note arginine/serine-rich 45 (SR45); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1). protein_id AT1G16610.3p transcript_id AT1G16610.3 protein_id AT1G16610.3p transcript_id AT1G16610.3
At1g16610	chr1:005675925	0.0	C/5675925-5676006,5676282-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677355,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.2 CDS arginine/serine-rich 45 [TAIR10] CDS gene_syn ARGININE/SERINE-RICH PROTEIN SR45, F19K19.9, F19K19_9, RNPS1, SR45, arginine/serine-rich 45 gene SR45 function Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth. go_component nucleolus|GO:0005730|15496452|IDA go_component nucleoplasm|GO:0005654|14675452|IDA go_component nuclear speck|GO:0016607|14675452|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10593939|IPI go_process RNA splicing|GO:0008380|16807317|NAS go_process sugar mediated signaling pathway|GO:0010182|20699397|IMP go_function RNA binding|GO:0003723||ISS go_function protein binding|GO:0005515|10593939|IPI product arginine/serine-rich 45 note arginine/serine-rich 45 (SR45); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: sugar mediated signaling pathway, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nucleoplasm, nuclear speck, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16610.2p transcript_id AT1G16610.2 protein_id AT1G16610.2p transcript_id AT1G16610.2
At1g16610	chr1:005675925	0.0	C/5675925-5676006,5676282-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677376,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.1 CDS arginine/serine-rich 45 [TAIR10] CDS gene_syn ARGININE/SERINE-RICH PROTEIN SR45, F19K19.9, F19K19_9, RNPS1, SR45, arginine/serine-rich 45 gene SR45 function Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth. go_component nucleolus|GO:0005730|15496452|IDA go_component nucleoplasm|GO:0005654|14675452|IDA go_component nuclear speck|GO:0016607|14675452|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10593939|IPI go_process RNA splicing|GO:0008380|16807317|NAS go_process sugar mediated signaling pathway|GO:0010182|20699397|IMP go_function RNA binding|GO:0003723||ISS go_function protein binding|GO:0005515|10593939|IPI product arginine/serine-rich 45 note arginine/serine-rich 45 (SR45); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: sugar mediated signaling pathway, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nucleoplasm, nuclear speck, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1); Has 62425 Blast hits to 38843 proteins in 1486 species: Archae - 39; Bacteria - 6019; Metazoa - 27409; Fungi - 8585; Plants - 6560; Viruses - 1329; Other Eukaryotes - 12484 (source: NCBI BLink). protein_id AT1G16610.1p transcript_id AT1G16610.1 protein_id AT1G16610.1p transcript_id AT1G16610.1
AT1G16610	chr1:005676177	0.0	C/5676177-5676186,5676282-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677355,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.5 AT1G16610.5 CDS arginine/serine-rich 45
AT1G16610	chr1:005676278	0.0	C/5676278-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677355,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.4 AT1G16610.4 CDS arginine/serine-rich 45
AT1G16610	chr1:005676278	0.0	C/5676278-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677376,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.6 AT1G16610.6 CDS arginine/serine-rich 45
AT1G16610	chr1:005676278	0.0	C/5676278-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677376,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.7 AT1G16610.7 CDS arginine/serine-rich 45
At1g16620	chr1:005679819	0.0	W/5679819-5681188	AT1G16620.1 [TAIR10] mRNA
At1g16620	chr1:005679819	0.0	W/5679819-5681188	AT1G16620 [TAIR10] TE pseudo gene_syn F19K19.24 note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-158 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)
At1g16630	chr1:005682212	0.0	C/5682212-5684749	AT1G16630.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F19K19.8, F19K19_8 go_component chloroplast|GO:0009507||IEA product unknown protein note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16270.1); Has 10587 Blast hits to 5736 proteins in 617 species: Archae - 88; Bacteria - 963; Metazoa - 3686; Fungi - 820; Plants - 541; Viruses - 438; Other Eukaryotes - 4051 (source: NCBI BLink). protein_id AT1G16630.1p transcript_id AT1G16630.1 protein_id AT1G16630.1p transcript_id AT1G16630.1
At1g16635	chr1:005685503	0.0	C/5685503-5686368	AT1G16635.1 [TAIR10] ncRNA product other RNA transcript_id AT1G16635.1
At1g16640	chr1:005686763	0.0	W/5686763-5686828,5687195-5687533	AT1G16640.1 CDS AP2/B3-like transcriptional factor family protein [TAIR10] CDS gene_syn F19K19.7, F19K19_7 go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||IEA go_component cellular_component|GO:0005575||ND go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product AP2/B3-like transcriptional factor family protein note AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06220.1); Has 242 Blast hits to 231 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16640.1p transcript_id AT1G16640.1 protein_id AT1G16640.1p transcript_id AT1G16640.1
AT1G16650	chr1:005687994	0.0	W/5687994-5688116,5688195-5688290,5688395-5688478,5688573-5688647,5688997-5689101,5689311-5689450,5689612-5689848,5689973-5690147,5690258-5690341,5690455-5690584,5690661-5690818,5690919-5691101	AT1G16650.3 AT1G16650.3 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
At1g16650	chr1:005687994	0.0	W/5687994-5688116,5688195-5688290,5688395-5688478,5688573-5688647,5689021-5689101,5689311-5689450,5689612-5689848,5689973-5690147,5690258-5690341,5690455-5690584,5690661-5690818,5690919-5691101	AT1G16650.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F19K19.6, F19K19_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Has 486 Blast hits to 429 proteins in 154 species: Archae - 0; Bacteria - 55; Metazoa - 267; Fungi - 96; Plants - 28; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). protein_id AT1G16650.1p transcript_id AT1G16650.1 protein_id AT1G16650.1p transcript_id AT1G16650.1
AT1G16650	chr1:005687994	0.0	W/5687994-5688116,5688195-5688290,5688395-5688478,5688573-5688647,5689021-5689101,5689311-5689450,5689612-5689848,5689973-5690147,5690258-5690395	AT1G16650.2 AT1G16650.2 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
At1g16660	chr1:005692024	0.0	W/5692024-5696458	AT1G16660.1 [TAIR10] mRNA
At1g16660	chr1:005692024	0.0	W/5692024-5696458	AT1G16660 [TAIR10] TE pseudo gene_syn F19K19.5 note Transposable element gene, copia-like retrotransposon family, has a 2.0e-268 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
At1g16670	chr1:005697846	0.0	W/5697846-5697900,5698023-5698138,5698227-5698437,5698526-5698769,5698860-5699010,5699097-5699492	AT1G16670.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F19K19.4, F19K19_4 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G09010.1); Has 119178 Blast hits to 117668 proteins in 4361 species: Archae - 113; Bacteria - 13232; Metazoa - 43958; Fungi - 10262; Plants - 33662; Viruses - 406; Other Eukaryotes - 17545 (source: NCBI BLink). protein_id AT1G16670.1p transcript_id AT1G16670.1 protein_id AT1G16670.1p transcript_id AT1G16670.1
At1g16680	chr1:005702930	0.0	W/5702930-5703250,5703405-5703534,5703672-5704168,5704251-5704331,5704433-5704537,5704633-5704746,5704848-5704931,5705010-5705081,5705277-5705537	AT1G16680.1 CDS Chaperone DnaJ-domain superfamily protein [TAIR10] CDS gene_syn F19K19.3, F19K19_3 go_process protein folding|GO:0006457||IEA go_function heat shock protein binding|GO:0031072||IEA go_function unfolded protein binding|GO:0051082||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product Chaperone DnaJ-domain superfamily protein note Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G79030.1); Has 18225 Blast hits to 18222 proteins in 3146 species: Archae - 124; Bacteria - 7724; Metazoa - 3097; Fungi - 1583; Plants - 1765; Viruses - 36; Other Eukaryotes - 3896 (source: NCBI BLink). protein_id AT1G16680.1p transcript_id AT1G16680.1 protein_id AT1G16680.1p transcript_id AT1G16680.1
At1g16690	chr1:005706458	0.0	W/5706458-5706616,5706706-5706838,5706915-5707017,5707379-5707502,5707820-5707885,5708010-5708048,5708150-5708230,5708333-5708380,5708475-5708525,5708640-5708708,5708811-5709047,5709162-5709371	AT1G16690.1 CDS Enhancer of polycomb-like transcription factor protein [TAIR10] CDS gene_syn F19K19.2, F19K19_2 go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Enhancer of polycomb-like transcription factor protein note Enhancer of polycomb-like transcription factor protein; CONTAINS InterPro DOMAIN/s: Enhancer of polycomb-like (InterPro:IPR019542); BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT1G79020.1); Has 400 Blast hits to 400 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 185; Fungi - 95; Plants - 75; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). protein_id AT1G16690.1p transcript_id AT1G16690.1 protein_id AT1G16690.1p transcript_id AT1G16690.1
At1g16700	chr1:005710012	0.0	W/5710012-5710065,5710481-5710559,5710660-5710713,5710824-5710915,5710996-5711109,5711208-5711275,5711387-5711498,5711599-5711694	AT1G16700.1 CDS Alpha-helical ferredoxin [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 14, ATMLO14, F19K19.1, F19K19_1 go_process oxidation reduction|GO:0055114||IEA go_function metal ion binding|GO:0046872|12606038|IDA go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|12606038|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component respiratory chain complex I|GO:0045271|18189341|IDA go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS product Alpha-helical ferredoxin note Alpha-helical ferredoxin; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, respiratory chain complex I; CONTAINS InterPro DOMAIN/s: 4Fe-4S binding domain (InterPro:IPR001450), NADH-quinone oxidoreductase, chain I (InterPro:IPR010226), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), Alpha-helical ferredoxin (InterPro:IPR009051); BEST Arabidopsis thaliana protein match is: Alpha-helical ferredoxin (TAIR:AT1G79010.1); Has 11610 Blast hits to 10987 proteins in 2441 species: Archae - 1438; Bacteria - 7070; Metazoa - 154; Fungi - 106; Plants - 790; Viruses - 1; Other Eukaryotes - 2051 (source: NCBI BLink). protein_id AT1G16700.1p transcript_id AT1G16700.1 protein_id AT1G16700.1p transcript_id AT1G16700.1
At1g16705	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713448-5713522	AT1G16705.2 CDS p300/CBP acetyltransferase-related protein-related [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product p300/CBP acetyltransferase-related protein-related note p300/CBP acetyltransferase-related protein-related; BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 12 (TAIR:AT1G16710.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16705.2p transcript_id AT1G16705.2 protein_id AT1G16705.2p transcript_id AT1G16705.2
At1g16705	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713451-5713522	AT1G16705.1 CDS p300/CBP acetyltransferase-related protein-related [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product p300/CBP acetyltransferase-related protein-related note p300/CBP acetyltransferase-related protein-related; BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 12 (TAIR:AT1G16710.2); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16705.1p transcript_id AT1G16705.1 protein_id AT1G16705.1p transcript_id AT1G16705.1
AT1G16705	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713451-5713522	AT1G16705.3 AT1G16705.3 CDS p300/CBP acetyltransferase-related protein-related
AT1G16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715520,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.4 AT1G16710.4 CDS histone acetyltransferase of the CBP family 12
AT1G16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715520,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.5 AT1G16710.5 CDS histone acetyltransferase of the CBP family 12
AT1G16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715520,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.6 AT1G16710.6 CDS histone acetyltransferase of the CBP family 12
AT1G16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.10 AT1G16710.10 CDS histone acetyltransferase of the CBP family 12
AT1G16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.3 AT1G16710.3 CDS histone acetyltransferase of the CBP family 12
AT1G16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.7 AT1G16710.7 CDS histone acetyltransferase of the CBP family 12
AT1G16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.8 AT1G16710.8 CDS histone acetyltransferase of the CBP family 12
AT1G16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720635	AT1G16710.9 AT1G16710.9 CDS histone acetyltransferase of the CBP family 12
At1g16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.1 CDS histone acetyltransferase of the CBP family 12 [TAIR10] CDS gene_syn F19K19.17, HAC12, histone acetyltransferase of the CBP family 12 gene HAC12 function Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process protein amino acid acetylation|GO:0006473|17144897|IMP go_process flower development|GO:0009908|17144897|IGI go_function transcription cofactor activity|GO:0003712||ISS go_function histone acetyltransferase activity|GO:0004402|12466527|ISS go_function histone acetyltransferase activity|GO:0004402|17877703|IDA product histone acetyltransferase of the CBP family 12 note histone acetyltransferase of the CBP family 12 (HAC12); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity; INVOLVED IN: flower development, regulation of transcription, DNA-dependent, protein amino acid acetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1); Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0; Bacteria - 235; Metazoa - 1739; Fungi - 482; Plants - 447; Viruses - 18; Other Eukaryotes - 2682 (source: NCBI BLink). protein_id AT1G16710.1p transcript_id AT1G16710.1 protein_id AT1G16710.1p transcript_id AT1G16710.1
At1g16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715651,5715747-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.2 CDS histone acetyltransferase of the CBP family 12 [TAIR10] CDS gene_syn F19K19.17, HAC12, histone acetyltransferase of the CBP family 12 gene HAC12 function Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process protein amino acid acetylation|GO:0006473|17144897|IMP go_process flower development|GO:0009908|17144897|IGI go_function transcription cofactor activity|GO:0003712||ISS go_function histone acetyltransferase activity|GO:0004402|12466527|ISS go_function histone acetyltransferase activity|GO:0004402|17877703|IDA product histone acetyltransferase of the CBP family 12 note histone acetyltransferase of the CBP family 12 (HAC12); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity; INVOLVED IN: flower development, regulation of transcription, DNA-dependent, protein amino acid acetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1). protein_id AT1G16710.2p transcript_id AT1G16710.2 protein_id AT1G16710.2p transcript_id AT1G16710.2
At1g16720	chr1:005723161	0.0	W/5723161-5723730,5723824-5724036,5724139-5724343,5724441-5724516,5724677-5724812,5724897-5725001,5725126-5725206,5725309-5725398,5725537-5725602,5725669-5725725,5725825-5725902,5726051-5726098,5726177-5726248	AT1G16720.1 CDS high chlorophyll fluorescence phenotype 173 [TAIR10] CDS gene_syn F19K19.14, HCF173, high chlorophyll fluorescence phenotype 173 gene HCF173 function Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_process translational initiation|GO:0006413|17435084|IMP go_process photosystem II assembly|GO:0010207|17435084|IMP product high chlorophyll fluorescence phenotype 173 note high chlorophyll fluorescence phenotype 173 (HCF173); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: photosystem II assembly, translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G18810.2); Has 1950 Blast hits to 1792 proteins in 453 species: Archae - 27; Bacteria - 1263; Metazoa - 9; Fungi - 6; Plants - 464; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). protein_id AT1G16720.1p transcript_id AT1G16720.1 protein_id AT1G16720.1p transcript_id AT1G16720.1
AT1G16720	chr1:005723161	0.0	W/5723161-5723730,5723824-5724036,5724139-5724343,5724441-5724516,5724677-5724812,5724897-5725001,5725126-5725206,5725309-5725398,5725537-5725602,5725669-5725725,5725825-5725920	AT1G16720.3 AT1G16720.3 CDS high chlorophyll fluorescence phenotype 173
AT1G16720	chr1:005723161	0.0	W/5723161-5723730,5723824-5724036,5724139-5724343,5724441-5724516,5724677-5724812,5724897-5725001,5725126-5725206,5725309-5725398,5725537-5725602,5725669-5725902,5726051-5726098,5726177-5726248	AT1G16720.2 AT1G16720.2 CDS high chlorophyll fluorescence phenotype 173
At1g16730	chr1:005726617	0.0	C/5726617-5726760,5726848-5727312	AT1G16730.1 CDS unknown protein 6 [TAIR10] CDS gene_syn F19K19.18, UP6, unknown protein 6 gene UP6 go_component peroxisome|GO:0005777|20009535|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein 6 note unknown protein 6 (UP6); Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G16730.1p transcript_id AT1G16730.1 protein_id AT1G16730.1p transcript_id AT1G16730.1
At1g16740	chr1:005727773	0.0	W/5727773-5727958,5728756-5728950	AT1G16740.1 CDS Ribosomal protein L20 [TAIR10] CDS gene_syn F19K19.15 go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_function rRNA binding|GO:0019843||IEA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_process ribosome biogenesis|GO:0042254||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L20 note Ribosomal protein L20; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L20 (InterPro:IPR005813); BEST Arabidopsis thaliana protein match is: ribosomal protein L20 (TAIR:ATCG00660.1); Has 8162 Blast hits to 8162 proteins in 2777 species: Archae - 0; Bacteria - 5193; Metazoa - 126; Fungi - 0; Plants - 621; Viruses - 0; Other Eukaryotes - 2222 (source: NCBI BLink). protein_id AT1G16740.1p transcript_id AT1G16740.1 protein_id AT1G16740.1p transcript_id AT1G16740.1
At1g16750	chr1:005729221	0.0	C/5729221-5729532,5729613-5729732,5729812-5729904,5729996-5730055,5730136-5730235,5730317-5730804,5730884-5731033,5731131-5731247,5731338-5731424,5731528-5731558,5731658-5731689	AT1G16750.1 CDS GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547) [TAIR10] CDS gene_syn F19K19.16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF547 note Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT3G13000.2); Has 699 Blast hits to 674 proteins in 105 species: Archae - 2; Bacteria - 80; Metazoa - 34; Fungi - 2; Plants - 533; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G16750.1p transcript_id AT1G16750.1 protein_id AT1G16750.1p transcript_id AT1G16750.1
AT1G16750	chr1:005729758	0.0	C/5729758-5729904,5729996-5730055,5730136-5730235,5730317-5730804,5730884-5731033,5731131-5731247,5731338-5731424,5731528-5731558,5731658-5731689	AT1G16750.2 AT1G16750.2 CDS GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547)
AT1G16760	chr1:005734234	0.0	W/5734234-5734411,5734542-5734633,5734728-5734849,5734949-5735136,5735231-5735285,5735364-5735694,5735791-5735892,5735975-5736385,5736510-5737262,5737345-5737401	AT1G16760.2 AT1G16760.2 CDS Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
At1g16760	chr1:005734234	0.0	W/5734234-5734411,5734542-5734633,5734728-5734849,5734949-5735136,5735231-5735285,5735364-5735694,5735791-5735892,5735975-5736385,5736510-5737307	AT1G16760.1 CDS Protein kinase protein with adenine nucleotide alpha hydrolases-like domain [TAIR10] CDS gene_syn F19K19.25 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process response to stress|GO:0006950||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product Protein kinase protein with adenine nucleotide alpha hydrolases-like domain note Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G78940.2); Has 113227 Blast hits to 112001 proteins in 4378 species: Archae - 122; Bacteria - 13420; Metazoa - 41738; Fungi - 9261; Plants - 32650; Viruses - 282; Other Eukaryotes - 15754 (source: NCBI BLink). protein_id AT1G16760.1p transcript_id AT1G16760.1 protein_id AT1G16760.1p transcript_id AT1G16760.1
At1g16770	chr1:005737900	0.0	W/5737900-5737953,5738045-5738284,5738364-5738514,5738581-5739110	AT1G16770.1 CDS hypothetical protein [TAIR10] CDS gene_syn F17F16.12, F17F16_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G16770.1p transcript_id AT1G16770.1 protein_id AT1G16770.1p transcript_id AT1G16770.1
At1g16770	chr1:005738135	0.0	W/5738135-5738284,5738364-5738514,5738581-5739110	AT1G16770.2 CDS hypothetical protein [TAIR10] CDS gene_syn F17F16.12, F17F16_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 103 Blast hits to 103 proteins in 50 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 65; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G16770.2p transcript_id AT1G16770.2 protein_id AT1G16770.2p transcript_id AT1G16770.2
AT1G16770	chr1:005738406	0.0	W/5738406-5738514,5738581-5739110	AT1G16770.3 AT1G16770.3 CDS hypothetical protein
At1g16780	chr1:005739468	0.0	C/5739468-5739567,5739697-5739916,5740003-5740114,5740195-5740350,5740441-5740605,5740689-5741126,5741310-5741497,5741672-5741792,5741888-5742060,5742435-5742567,5742637-5742784,5742870-5743021,5743126-5743329,5743471-5743569	AT1G16780.1 CDS Inorganic H pyrophosphatase family protein [TAIR10] CDS gene_syn AtVHP2;2, F17F16.2, F17F16_2, VHP2;2 gene VHP2;2 function Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves. go_component vacuole|GO:0005773|15215502|IDA go_process proton transport|GO:0015992||IEA go_function inorganic diphosphatase activity|GO:0004427||IEA go_function hydrogen-translocating pyrophosphatase activity|GO:0009678||IEA go_component Golgi apparatus|GO:0005794|20605924|IDA product Inorganic H pyrophosphatase family protein note VHP2;2; FUNCTIONS IN: inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: proton transport; LOCATED IN: Golgi apparatus, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: vacuolar H+-pyrophosphatase 2 (TAIR:AT1G78920.2); Has 6490 Blast hits to 6472 proteins in 788 species: Archae - 67; Bacteria - 1308; Metazoa - 5; Fungi - 1; Plants - 281; Viruses - 0; Other Eukaryotes - 4828 (source: NCBI BLink). protein_id AT1G16780.1p transcript_id AT1G16780.1 protein_id AT1G16780.1p transcript_id AT1G16780.1
AT1G16780	chr1:005739468	0.0	C/5739468-5739567,5739697-5739916,5740003-5740114,5740195-5740350,5740441-5740605,5740689-5741126,5741310-5741497,5741672-5741792,5741888-5742060,5742435-5742567,5742637-5742784,5742870-5743021,5743126-5743329,5743471-5743569	AT1G16780.2 AT1G16780.2 CDS Inorganic H pyrophosphatase family protein
AT1G16780	chr1:005739468	0.0	C/5739468-5739567,5739697-5739916,5740003-5740114,5740195-5740350,5740441-5740605,5740689-5741126,5741310-5741497,5741672-5741792,5741888-5742060,5742435-5742567,5742637-5742784,5742870-5743021,5743126-5743329,5743471-5743569	AT1G16780.3 AT1G16780.3 CDS Inorganic H pyrophosphatase family protein
At1g16790	chr1:005744638	0.0	W/5744638-5745072	AT1G16790.1 CDS ribosomal protein-related [TAIR10] CDS gene_syn F17F16.10, F17F16_10 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product ribosomal protein-related note ribosomal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 10 Blast hits to 10 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16790.1p transcript_id AT1G16790.1 protein_id AT1G16790.1p transcript_id AT1G16790.1
AT1G16800	chr1:005745523	0.0	C/5745523-5745545,5745659-5746707,5746798-5747036,5747201-5747326,5747405-5747470,5747551-5748467,5748604-5749006,5749275-5750407,5750507-5750777,5750933-5751226,5751518-5751655,5751783-5751891,5751991-5752180,5752391-5752569,5752983-5753056,5753165-5753287,5753394-5753524,5753611-5753759,5753865-5754011,5754122-5754201,5754291-5754407,5754611-5754995,5755136-5755263	AT1G16800.3 AT1G16800.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g16800	chr1:005745523	0.0	C/5745523-5745545,5745659-5746707,5746798-5747036,5747201-5747326,5747405-5747470,5747551-5748467,5748604-5749006,5749275-5750407,5750507-5750777,5750933-5751226,5751518-5751655,5751783-5751891,5751991-5752180,5752391-5752569,5752983-5753056,5753165-5753287,5753606-5753759,5753865-5754011,5754122-5754201,5754291-5754407,5754611-5754995,5755136-5755263	AT1G16800.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F17F16.1, F17F16_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function poly(U) RNA binding|GO:0008266|17511964|IDA product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1); Has 9771 Blast hits to 8579 proteins in 1344 species: Archae - 197; Bacteria - 2032; Metazoa - 2727; Fungi - 1277; Plants - 815; Viruses - 364; Other Eukaryotes - 2359 (source: NCBI BLink). protein_id AT1G16800.1p transcript_id AT1G16800.1 protein_id AT1G16800.1p transcript_id AT1G16800.1
AT1G16800	chr1:005745523	0.0	C/5745523-5745545,5745659-5746707,5746798-5747036,5747201-5747326,5747405-5747470,5747551-5748467,5748604-5749006,5749275-5750407,5750507-5750777,5750933-5751226,5751518-5751655,5751783-5751891,5751991-5752569,5752983-5753056,5753165-5753287,5753394-5753524,5753611-5753759,5753865-5754011,5754122-5754201,5754291-5754407,5754611-5754995,5755136-5755263	AT1G16800.2 AT1G16800.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g16810	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.1 CDS 7-dehydrocholesterol reductase-like protein, putative [TAIR10] CDS gene_syn F17F16.25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 395 Blast hits to 394 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 91; Plants - 65; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). protein_id AT1G16810.1p transcript_id AT1G16810.1 protein_id AT1G16810.1p transcript_id AT1G16810.1
At1g16810	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.2 CDS 7-dehydrocholesterol reductase-like protein, putative [TAIR10] CDS gene_syn F17F16.25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16810.2p transcript_id AT1G16810.2 protein_id AT1G16810.2p transcript_id AT1G16810.2
AT1G16810	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.3 AT1G16810.3 CDS 7-dehydrocholesterol reductase-like protein, putative
AT1G16820	chr1:005757199	0.0	C/5757199-5757213,5757308-5757397,5757481-5757522	AT1G16820.3 AT1G16820.3 CDS vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related
AT1G16820	chr1:005757199	0.0	C/5757199-5757213,5757308-5757397,5757481-5757522	AT1G16820.4 AT1G16820.4 CDS vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related
At1g16820	chr1:005757199	0.0	C/5757199-5757213,5757308-5757397,5757481-5757559,5758186-5758202	AT1G16820.2 CDS vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related [TAIR10] CDS gene_syn F17F16.15 product vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related note vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2). protein_id AT1G16820.2p transcript_id AT1G16820.2 protein_id AT1G16820.2p transcript_id AT1G16820.2
At1g16820	chr1:005757199	0.0	C/5757199-5757213,5757308-5757397,5757481-5757559,5758367-5758464	AT1G16820.1 CDS vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related [TAIR10] CDS gene_syn F17F16.15 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA product vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related note vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2); Has 151 Blast hits to 150 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G16820.1p transcript_id AT1G16820.1 protein_id AT1G16820.1p transcript_id AT1G16820.1
At1g16825	chr1:005758877	0.0	W/5758877-5759043,5759650-5759791,5760071-5760140,5760252-5760340	AT1G16825.1 CDS Reticulon family protein [TAIR10] CDS go_component endoplasmic reticulum|GO:0005783||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Reticulon family protein note Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT1G78895.1); Has 155 Blast hits to 155 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16825.1p transcript_id AT1G16825.1 protein_id AT1G16825.1p transcript_id AT1G16825.1
AT1G16825	chr1:005758877	0.0	W/5758877-5759043,5759650-5759836	AT1G16825.2 AT1G16825.2 CDS Reticulon family protein
At1g16830	chr1:005760793	0.0	W/5760793-5762619	AT1G16830.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F17F16.24 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 39592 Blast hits to 12738 proteins in 255 species: Archae - 3; Bacteria - 24; Metazoa - 191; Fungi - 211; Plants - 38370; Viruses - 0; Other Eukaryotes - 793 (source: NCBI BLink). protein_id AT1G16830.1p transcript_id AT1G16830.1 protein_id AT1G16830.1p transcript_id AT1G16830.1
At1g16840	chr1:005763111	0.0	C/5763111-5763190,5763579-5763984	AT1G16840.1 CDS hypothetical protein [TAIR10] CDS gene_syn F17F16.27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16840.1p transcript_id AT1G16840.1 protein_id AT1G16840.1p transcript_id AT1G16840.1
At1g16840	chr1:005763111	0.0	C/5763111-5763190,5763579-5763984	AT1G16840.3 CDS hypothetical protein [TAIR10] CDS gene_syn F17F16.27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16840.3p transcript_id AT1G16840.3 protein_id AT1G16840.3p transcript_id AT1G16840.3
At1g16840	chr1:005763111	0.0	C/5763111-5763190,5763579-5763984	AT1G16840.4 CDS hypothetical protein [TAIR10] CDS gene_syn F17F16.27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16840.4p transcript_id AT1G16840.4 protein_id AT1G16840.4p transcript_id AT1G16840.4
At1g16840	chr1:005763499	0.0	C/5763499-5763984	AT1G16840.2 CDS hypothetical protein [TAIR10] CDS gene_syn F17F16.27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16840.2p transcript_id AT1G16840.2 protein_id AT1G16840.2p transcript_id AT1G16840.2
AT1G16840	chr1:005763499	0.0	C/5763499-5763984	AT1G16840.5 AT1G16840.5 CDS hypothetical protein
At1g16850	chr1:005765062	0.0	C/5765062-5765275,5765374-5765618	AT1G16850.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F17F16.17 go_component endomembrane system|GO:0012505||IEA go_process response to salt stress|GO:0009651|17888165|IMP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16850.1p transcript_id AT1G16850.1 protein_id AT1G16850.1p transcript_id AT1G16850.1
At1g16858	chr1:005767516	0.0	W/5767516-5767593	AT1G16858.1 CDS conserved peptide upstream open reading frame 55 [TAIR10] CDS gene_syn CPuORF55, conserved peptide upstream open reading frame 55 gene CPuORF55 function Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF55 represents a conserved upstream opening reading frame relative to major ORF AT1G16860.1 product conserved peptide upstream open reading frame 55 note conserved peptide upstream open reading frame 55 (CPuORF55); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G16858.1p transcript_id AT1G16858.1 protein_id AT1G16858.1p transcript_id AT1G16858.1
At1g16860	chr1:005768280	0.0	W/5768280-5769143,5769431-5769586,5769686-5769897,5769991-5770183	AT1G16860.1 CDS Ubiquitin-specific protease family C19-related protein [TAIR10] CDS gene_syn F17F16.16 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA product Ubiquitin-specific protease family C19-related protein note Ubiquitin-specific protease family C19-related protein; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: Ubiquitin-specific protease family C19-related protein (TAIR:AT1G78880.1); Has 605 Blast hits to 295 proteins in 85 species: Archae - 0; Bacteria - 22; Metazoa - 26; Fungi - 28; Plants - 169; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink). protein_id AT1G16860.1p transcript_id AT1G16860.1 protein_id AT1G16860.1p transcript_id AT1G16860.1
At1g16870	chr1:005770964	0.0	C/5770964-5771075,5771245-5771417,5771489-5771575,5771692-5771946,5772027-5772238,5772446-5772612,5772721-5773157	AT1G16870.1 CDS mitochondrial 28S ribosomal protein S29-related [TAIR10] CDS gene_syn F17F16.14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product mitochondrial 28S ribosomal protein S29-related note mitochondrial 28S ribosomal protein S29-related; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23/S29, mitochondrial (InterPro:IPR019368); Has 239 Blast hits to 239 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 38; Plants - 38; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). protein_id AT1G16870.1p transcript_id AT1G16870.1 protein_id AT1G16870.1p transcript_id AT1G16870.1
At1g16880	chr1:005773796	0.0	W/5773796-5773950,5774332-5774377,5774464-5774601,5774733-5774827,5774969-5775053,5775150-5775209,5775540-5775595,5775704-5775809,5775913-5775981,5776063-5776125	AT1G16880.1 CDS uridylyltransferase-related [TAIR10] CDS gene_syn F17F16.13 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component stromule|GO:0010319|16923014|IDA go_process response to cold|GO:0009409|16923014|IEP product uridylyltransferase-related note uridylyltransferase-related; INVOLVED IN: response to cold; LOCATED IN: chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT5G04740.1); Has 499 Blast hits to 450 proteins in 72 species: Archae - 0; Bacteria - 103; Metazoa - 0; Fungi - 0; Plants - 340; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). protein_id AT1G16880.1p transcript_id AT1G16880.1 protein_id AT1G16880.1p transcript_id AT1G16880.1
At1g16880	chr1:005773796	0.0	W/5773796-5773950,5774332-5774377,5774464-5774601,5774733-5774827,5774969-5775053,5775150-5775272	AT1G16880.2 CDS uridylyltransferase-related [TAIR10] CDS gene_syn F17F16.13 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component stromule|GO:0010319|16923014|IDA go_process response to cold|GO:0009409|16923014|IEP product uridylyltransferase-related note uridylyltransferase-related; INVOLVED IN: response to cold; LOCATED IN: chloroplast thylakoid membrane, stromule, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT5G04740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G16880.2p transcript_id AT1G16880.2 protein_id AT1G16880.2p transcript_id AT1G16880.2
At1g16890	chr1:005776550	0.0	C/5776550-5776587,5776687-5776784,5776893-5776966,5777079-5777120,5777414-5777472,5777852-5777903	AT1G16890.1 CDS ubiquitin-conjugating enzyme 36 [TAIR10] CDS gene_syn F17F16.19, UBC13B, UBC36, UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 gene UBC36 function UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. go_component plasma membrane|GO:0005886|17644812|IDA go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA go_process response to iron ion|GO:0010039|20113438|IMP go_process root epidermal cell differentiation|GO:0010053|20113438|IGI go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA go_function ubiquitin-protein ligase activity|GO:0004842||ISS go_function protein binding|GO:0005515|18178771|IPI product ubiquitin-conjugating enzyme 36 note ubiquitin-conjugating enzyme 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: root epidermal cell differentiation, response to iron ion, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2); Has 10019 Blast hits to 10015 proteins in 393 species: Archae - 0; Bacteria - 4; Metazoa - 4493; Fungi - 2117; Plants - 1786; Viruses - 23; Other Eukaryotes - 1596 (source: NCBI BLink). protein_id AT1G16890.1p transcript_id AT1G16890.1 protein_id AT1G16890.1p transcript_id AT1G16890.1
At1g16890	chr1:005776550	0.0	C/5776550-5776587,5776687-5776784,5776893-5776966,5777079-5777120,5777414-5777472,5777852-5777938,5778035-5778089,5778292-5778327	AT1G16890.3 CDS ubiquitin-conjugating enzyme 36 [TAIR10] CDS gene_syn F17F16.19, UBC13B, UBC36, UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 gene UBC36 function UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA go_process response to iron ion|GO:0010039|20113438|IMP go_process root epidermal cell differentiation|GO:0010053|20113438|IGI go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA go_function ubiquitin-protein ligase activity|GO:0004842||ISS go_function protein binding|GO:0005515|18178771|IPI product ubiquitin-conjugating enzyme 36 note ubiquitin-conjugating enzyme 36 (UBC36); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2). protein_id AT1G16890.3p transcript_id AT1G16890.3 protein_id AT1G16890.3p transcript_id AT1G16890.3
At1g16890	chr1:005776550	0.0	C/5776550-5776587,5776687-5776784,5776893-5776966,5777079-5777120,5777414-5777472,5777852-5777938,5778062-5778089,5778292-5778327	AT1G16890.2 CDS ubiquitin-conjugating enzyme 36 [TAIR10] CDS gene_syn F17F16.19, UBC13B, UBC36, UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 gene UBC36 function UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. go_component plasma membrane|GO:0005886|17644812|IDA go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA go_process response to iron ion|GO:0010039|20113438|IMP go_process root epidermal cell differentiation|GO:0010053|20113438|IGI go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA go_function ubiquitin-protein ligase activity|GO:0004842||ISS go_function protein binding|GO:0005515|18178771|IPI product ubiquitin-conjugating enzyme 36 note ubiquitin-conjugating enzyme 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: root epidermal cell differentiation, response to iron ion, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2); Has 10361 Blast hits to 10354 proteins in 399 species: Archae - 0; Bacteria - 4; Metazoa - 4571; Fungi - 2197; Plants - 1880; Viruses - 23; Other Eukaryotes - 1686 (source: NCBI BLink). protein_id AT1G16890.2p transcript_id AT1G16890.2 protein_id AT1G16890.2p transcript_id AT1G16890.2
At1g16900	chr1:005779262	0.0	C/5779262-5779393,5779482-5779571,5779665-5779861,5780034-5780172,5780273-5780384,5780532-5780827,5780961-5781178,5781392-5781551,5781642-5781729,5782023-5782303	AT1G16900.1 CDS Alg9-like mannosyltransferase family [TAIR10] CDS gene_syn F17F16.20 function curculin-like (mannose-binding) lectin family protein, very low similarity to Ser Thr protein kinase GI:2598067 from (Zea mays); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA go_process GPI anchor biosynthetic process|GO:0006506||IEA go_function sugar binding|GO:0005529||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Alg9-like mannosyltransferase family note Alg9-like mannosyltransferase family; FUNCTIONS IN: sugar binding, transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT5G14850.2); Has 817 Blast hits to 803 proteins in 193 species: Archae - 0; Bacteria - 22; Metazoa - 302; Fungi - 301; Plants - 91; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). protein_id AT1G16900.1p transcript_id AT1G16900.1 protein_id AT1G16900.1p transcript_id AT1G16900.1
At1g16905	chr1:005782546	0.0	C/5782546-5783817	AT1G16905.1 CDS Curculin-like (mannose-binding) lectin family protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_function sugar binding|GO:0005529||IEA go_process biological_process|GO:0008150||ND product Curculin-like (mannose-binding) lectin family protein note Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G16905.1p transcript_id AT1G16905.1 protein_id AT1G16905.1p transcript_id AT1G16905.1
At1g16910	chr1:005785373	0.0	W/5785373-5785867	AT1G16910.1 CDS LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [TAIR10] CDS gene_syn F17F16.11, LIGHT SENSITIVE HYPOCOTYLS 8, LSH8 gene LSH8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF640) note LIGHT SENSITIVE HYPOCOTYLS 8 (LSH8); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G78815.1); Has 310 Blast hits to 310 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 296; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16910.1p transcript_id AT1G16910.1 protein_id AT1G16910.1p transcript_id AT1G16910.1
At1g16916	chr1:005786762	0.0	C/5786762-5786895,5786984-5787047	AT1G16916.1 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G16916.1p transcript_id AT1G16916.1 protein_id AT1G16916.1p transcript_id AT1G16916.1
AT1G16916	chr1:005786762	0.0	C/5786762-5786895,5786984-5787158	AT1G16916.2 AT1G16916.2 CDS transmembrane protein, putative
At1g16920	chr1:005787489	0.0	C/5787489-5787918,5788927-5789147	AT1G16920.1 CDS RAB GTPase homolog A1B [TAIR10] CDS gene_syn ATRABA1B, F17F16.26, RAB GTPase homolog A1B, RAB11, RABA1b gene RABA1b function small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking. go_component vacuole|GO:0005773|14760709|IDA go_component plasma membrane|GO:0005886|15060130|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component trans-Golgi network|GO:0005802||NAS go_process intracellular protein transport|GO:0006886|11756458|TAS go_function GTP binding|GO:0005525|8843944|IDA go_function GTP binding|GO:0005525||ISS product RAB GTPase homolog A1B note RAB GTPase homolog A1B (RABA1b); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28198 Blast hits to 28143 proteins in 766 species: Archae - 30; Bacteria - 158; Metazoa - 14550; Fungi - 4232; Plants - 3316; Viruses - 20; Other Eukaryotes - 5892 (source: NCBI BLink). protein_id AT1G16920.1p transcript_id AT1G16920.1 protein_id AT1G16920.1p transcript_id AT1G16920.1
At1g16930	chr1:005789987	0.0	W/5789987-5790907,5791013-5791153,5791247-5791534	AT1G16930.1 CDS F-box/RNI-like/FBD-like domains-containing protein [TAIR10] CDS gene_syn F17F16.22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like/FBD-like domains-containing protein note F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G80470.1); Has 2349 Blast hits to 2299 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2347; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G16930.1p transcript_id AT1G16930.1 protein_id AT1G16930.1p transcript_id AT1G16930.1
AT1G16930	chr1:005789987	0.0	W/5789987-5790907,5791013-5791153,5791247-5791534	AT1G16930.2 AT1G16930.2 CDS F-box/RNI-like/FBD-like domains-containing protein
AT1G16930	chr1:005789987	0.0	W/5789987-5790907,5791013-5791153,5791247-5791534	AT1G16930.3 AT1G16930.3 CDS F-box/RNI-like/FBD-like domains-containing protein
At1g16940	chr1:005791983	0.0	W/5791983-5792825,5792925-5793068,5793174-5793491	AT1G16940.1 CDS F-box/RNI-like/FBD-like domains-containing protein [TAIR10] CDS gene_syn F17F16.21 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like/FBD-like domains-containing protein note F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G78750.1); Has 1457 Blast hits to 1436 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 1429; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G16940.1p transcript_id AT1G16940.1 protein_id AT1G16940.1p transcript_id AT1G16940.1
AT1G16945	chr1:005793905	0.0	W/5793905-5793955,5794051-5794197	AT1G16945.1 AT1G16945.1 CDS F-box/FBD/LRR protein
At1g16950	chr1:005796083	0.0	W/5796083-5796364	AT1G16950.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F17F16.23 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G16950.1p transcript_id AT1G16950.1 protein_id AT1G16950.1p transcript_id AT1G16950.1
At1g16960	chr1:005799998	0.0	W/5799998-5800031,5800162-5800284,5800360-5800482,5800560-5800624	AT1G16960.1 CDS Ubiquitin domain-containing protein [TAIR10] CDS gene_syn F17F16.18 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Ubiquitin domain-containing protein note Ubiquitin domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Ubiquitin domain-containing protein (TAIR:AT1G53400.1); Has 325 Blast hits to 324 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 67; Plants - 89; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G16960.1p transcript_id AT1G16960.1 protein_id AT1G16960.1p transcript_id AT1G16960.1
At1g16970	chr1:005801159	0.0	C/5801159-5801272,5801396-5801558,5801670-5801772,5801858-5801978,5802066-5802158,5802288-5802348,5802457-5802518,5802931-5803078,5803348-5803424,5803656-5803833,5804056-5804114,5804224-5804307,5804434-5804551,5804667-5804772,5805035-5805149,5805242-5805361,5805482-5805559,5805659-5805724	AT1G16970.1 CDS KU70 homolog [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA KU70 HOMOLOG, ATKU70, F6I1.2, F6I1_2, KU70, KU70 homolog, KU70-LIKE PROTEIN gene KU70 function Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. go_component nucleus|GO:0005634||IEA go_component DNA-dependent protein kinase-DNA ligase 4 complex|GO:0005958||IEA go_process telomere maintenance|GO:0000723|16396834|TAS go_process DNA repair|GO:0006281|16396834|TAS go_process response to heat|GO:0009408|18515112|IEP go_function double-stranded DNA binding|GO:0003690|16396834|IDA go_function protein binding|GO:0005515|12148535|IPI go_function protein binding|GO:0005515|16396834|IPI product KU70 homolog note KU70 homolog (KU70); FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: DNA repair, response to heat, telomere maintenance; LOCATED IN: nucleus, DNA-dependent protein kinase-DNA ligase 4 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA-binding SAP (InterPro:IPR003034), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), DNA helicase, ATP-dependent, Ku70 subunit (InterPro:IPR006165); Has 475 Blast hits to 466 proteins in 181 species: Archae - 0; Bacteria - 6; Metazoa - 182; Fungi - 177; Plants - 52; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). protein_id AT1G16970.1p transcript_id AT1G16970.1 protein_id AT1G16970.1p transcript_id AT1G16970.1
At1g16980	chr1:005807308	0.0	W/5807308-5807449,5807526-5807626,5807974-5808359,5808455-5808569,5808659-5808760,5808846-5808996,5809079-5809167,5809268-5809316,5809417-5809517,5809615-5809802,5809888-5810005,5810113-5810271,5810346-5810468,5810553-5810640,5810721-5810851,5810967-5811065,5811162-5811488	AT1G16980.1 CDS trehalose-6-phosphate synthase [TAIR10] CDS gene_syn ATTPS2, F6I1.1, F6I1_1, TPS2, TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 gene TPS2 function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. go_component cellular_component|GO:0005575||ND go_process trehalose biosynthetic process|GO:0005992|11701378|ISS go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11701378|ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product trehalose-phosphatase/synthase 2 note trehalose-phosphatase/synthase 2 (TPS2); CONTAINS InterPro DOMAIN/s: Alpha,alpha-trehalose-phosphate synthase (InterPro:IPR012766), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 3 (TAIR:AT1G17000.1); Has 3329 Blast hits to 3259 proteins in 973 species: Archae - 45; Bacteria - 1730; Metazoa - 120; Fungi - 651; Plants - 352; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink). protein_id AT1G16980.1p transcript_id AT1G16980.1 protein_id AT1G16980.1p transcript_id AT1G16980.1
AT1G16980	chr1:005807308	0.0	W/5807308-5807449,5807526-5807626,5807974-5808359,5808455-5808569,5808659-5808760,5808846-5808996,5809079-5809167,5809268-5809316,5809417-5809517,5809615-5809802,5809888-5810005,5810113-5810271,5810346-5810468,5810721-5810851,5810967-5811000	AT1G16980.2 AT1G16980.2 CDS trehalose-6-phosphate synthase
At1g17000	chr1:005812728	0.0	W/5812728-5812863,5813008-5813045,5813142-5813527,5813626-5813740,5813834-5813935,5814024-5814174,5814262-5814350,5814436-5814484,5814582-5814682,5814781-5814968,5815070-5815187,5815268-5815425,5815545-5815667,5815755-5815842,5815928-5816058,5816205-5816303,5816384-5816662	AT1G17000.1 CDS trehalose-phosphatase/synthase 3 [TAIR10] CDS gene_syn ATTPS3, F20D23.30, F20D23_30, TPS3, TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 gene TPS3 function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. go_component cellular_component|GO:0005575||ND go_process trehalose biosynthetic process|GO:0005992|11701378|ISS go_process trehalose biosynthetic process|GO:0005992||ISS go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11701378|ISS go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825||ISS product trehalose-phosphatase/synthase 3 note trehalose-phosphatase/synthase 3 (TPS3); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 2 (TAIR:AT1G16980.1); Has 3260 Blast hits to 3210 proteins in 969 species: Archae - 43; Bacteria - 1736; Metazoa - 120; Fungi - 628; Plants - 337; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink). protein_id AT1G17000.1p transcript_id AT1G17000.1 protein_id AT1G17000.1p transcript_id AT1G17000.1
At1g17010	chr1:005817667	0.0	W/5817667-5817924,5818149-5818396,5818482-5818809,5818932-5819183	AT1G17010.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F20D23.29, F20D23_29 go_process oxidation reduction|GO:0055114||IEA go_function iron ion binding|GO:0005506||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND go_process flavonoid biosynthetic process|GO:0009813||ISS go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: senescence-related gene 1 (TAIR:AT1G17020.1); Has 8317 Blast hits to 8272 proteins in 989 species: Archae - 0; Bacteria - 1073; Metazoa - 106; Fungi - 910; Plants - 4938; Viruses - 0; Other Eukaryotes - 1290 (source: NCBI BLink). protein_id AT1G17010.1p transcript_id AT1G17010.1 protein_id AT1G17010.1p transcript_id AT1G17010.1
At1g17020	chr1:005820258	0.0	W/5820258-5820512,5820767-5821014,5821094-5821424,5821499-5821741	AT1G17020.1 CDS senescence-related gene 1 [TAIR10] CDS gene_syn ATSRG1, F20D23.28, F20D23_28, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 gene SRG1 function Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. go_component cellular_component|GO:0005575||ND go_process flavonoid biosynthetic process|GO:0009813||ISS go_process organ senescence|GO:0010260|8883383|IEP go_function oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor|GO:0016682|8883383|ISS go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS product senescence-related gene 1 note senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink). protein_id AT1G17020.1p transcript_id AT1G17020.1 protein_id AT1G17020.1p transcript_id AT1G17020.1
At1g17030	chr1:005822487	0.0	W/5822487-5822757,5822958-5823544,5823680-5824195,5824290-5824424	AT1G17030.1 CDS hypothetical protein [TAIR10] CDS gene_syn F20D23.27, F20D23_27 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G17030.1p transcript_id AT1G17030.1 protein_id AT1G17030.1p transcript_id AT1G17030.1
At1g17040	chr1:005825109	0.0	W/5825109-5825267,5825339-5825368,5825483-5825674,5825761-5825970,5826056-5826208,5826297-5826461,5826571-5826750,5826845-5827113,5827183-5827345,5827442-5827779,5827852-5827929,5828038-5828056	AT1G17040.2 CDS SH2 domain protein A [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, ATSHA, F20D23.26, F20D23_26, SH2 domain protein A, SHA, STAT-TYPE LINKER-SH2 DOMAIN FACTOR A, STATLA gene SHA function Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor. go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_process signal transduction|GO:0007165||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||IEA go_function signal transducer activity|GO:0004871||IEA product SH2 domain protein A note SH2 domain protein A (SHA); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein B (TAIR:AT1G78540.1). protein_id AT1G17040.2p transcript_id AT1G17040.2 protein_id AT1G17040.2p transcript_id AT1G17040.2
At1g17040	chr1:005825109	0.0	W/5825109-5825267,5825483-5825674,5825761-5825970,5826056-5826208,5826297-5826461,5826571-5826750,5826845-5827113,5827183-5827345,5827442-5827779,5827852-5827929,5828038-5828056	AT1G17040.1 CDS SH2 domain protein A [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, ATSHA, F20D23.26, F20D23_26, SH2 domain protein A, SHA, STAT-TYPE LINKER-SH2 DOMAIN FACTOR A, STATLA gene SHA function Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor. go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_process signal transduction|GO:0007165||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||IEA go_function signal transducer activity|GO:0004871||IEA product SH2 domain protein A note SH2 domain protein A (SHA); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein B (TAIR:AT1G78540.1); Has 341 Blast hits to 335 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). protein_id AT1G17040.1p transcript_id AT1G17040.1 protein_id AT1G17040.1p transcript_id AT1G17040.1
AT1G17040	chr1:005825109	0.0	W/5825109-5825267,5825483-5825674,5825761-5825970,5826056-5826208,5826297-5826461,5826571-5826750,5826845-5827113,5827183-5827345,5827442-5827783	AT1G17040.3 AT1G17040.3 CDS SH2 domain protein A
At1g17050	chr1:005829289	0.0	W/5829289-5829508,5829847-5829971,5830051-5830178,5830274-5830377,5830459-5830586,5830667-5831215	AT1G17050.1 CDS solanesyl diphosphate synthase 2 [TAIR10] CDS gene_syn F20D23.25, F20D23_25, SPS2, solanesyl diphosphate synthase 2 gene SPS2 function Encodes a protein with solanesyl diphosphate synthase activity. go_component chloroplast|GO:0009507|18431481|IDA go_component plastid|GO:0009536|15653808|IDA go_process ubiquinone biosynthetic process|GO:0006744|15653808|IGI go_function trans-octaprenyltranstransferase activity|GO:0050347|15653808|IGI product solanesyl diphosphate synthase 2 note solanesyl diphosphate synthase 2 (SPS2); FUNCTIONS IN: trans-octaprenyltranstransferase activity; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 1 (TAIR:AT1G78510.1); Has 16766 Blast hits to 16738 proteins in 2950 species: Archae - 341; Bacteria - 9538; Metazoa - 427; Fungi - 613; Plants - 416; Viruses - 0; Other Eukaryotes - 5431 (source: NCBI BLink). protein_id AT1G17050.1p transcript_id AT1G17050.1 protein_id AT1G17050.1p transcript_id AT1G17050.1
At1g17060	chr1:005832282	0.0	C/5832282-5832707,5832798-5833184,5833267-5833511,5834295-5834512,5834973-5835255	AT1G17060.1 CDS cytochrome p450 72c1 [TAIR10] CDS gene_syn CYP72C1, F20D23.24, F20D23_24, SOB7, SUPPRESSOR OF PHYB-4 7, cytochrome p450 72c1 gene CYP72C1 function Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls. go_component endomembrane system|GO:0012505||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_process response to light stimulus|GO:0009416|15773851|IGI go_process unidimensional cell growth|GO:0009826|15773850|IMP go_process brassinosteroid metabolic process|GO:0016131|15689343|IMP go_process brassinosteroid metabolic process|GO:0016131|15773851|IMP go_function oxygen binding|GO:0019825||ISS product cytochrome p450 72c1 note cytochrome p450 72c1 (CYP72C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to light stimulus, brassinosteroid metabolic process, unidimensional cell growth; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 72, subfamily A, polypeptide 15 (TAIR:AT3G14690.1); Has 27908 Blast hits to 27397 proteins in 1448 species: Archae - 65; Bacteria - 2698; Metazoa - 11276; Fungi - 5119; Plants - 7743; Viruses - 3; Other Eukaryotes - 1004 (source: NCBI BLink). protein_id AT1G17060.1p transcript_id AT1G17060.1 protein_id AT1G17060.1p transcript_id AT1G17060.1
AT1G17065	chr1:005832303	0.0	W/5832303-5832607,5832661-5832728,5832807-5833003,5833037-5833070,5833285-5833388,5833816-5833858,5834020-5834030	AT1G17065.1 AT1G17065.1 CDS hypothetical protein
At1g17070	chr1:005837653	0.0	W/5837653-5840202	AT1G17070.1 CDS GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain [TAIR10] CDS gene_syn F20D23.23, F20D23_23 go_component intracellular|GO:0005622||IEA go_function nucleic acid binding|GO:0003676||IEA go_component intracellular|GO:0005622||ISS go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain note GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT2G42330.2); Has 1264 Blast hits to 1232 proteins in 250 species: Archae - 2; Bacteria - 6; Metazoa - 735; Fungi - 146; Plants - 190; Viruses - 1; Other Eukaryotes - 184 (source: NCBI BLink). protein_id AT1G17070.1p transcript_id AT1G17070.1 protein_id AT1G17070.1p transcript_id AT1G17070.1
At1g17080	chr1:005840458	0.0	C/5840458-5840517,5840623-5840740,5840833-5840911,5841329-5841536	AT1G17080.1 CDS Ribosomal protein L18ae family [TAIR10] CDS gene_syn F20D23.22, F20D23_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Ribosomal protein L18ae family note Ribosomal protein L18ae family; BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT1G53560.1); Has 119 Blast hits to 119 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17080.1p transcript_id AT1G17080.1 protein_id AT1G17080.1p transcript_id AT1G17080.1
At1g17090	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F20D23.31, F20D23_31 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17090.1p transcript_id AT1G17090.1 protein_id AT1G17090.1p transcript_id AT1G17090.1
At1g17090	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F20D23.31, F20D23_31 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17090.2p transcript_id AT1G17090.2 protein_id AT1G17090.2p transcript_id AT1G17090.2
AT1G17090	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.3 AT1G17090.3 CDS transmembrane protein, putative
AT1G17090	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.4 AT1G17090.4 CDS transmembrane protein, putative
AT1G17090	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.5 AT1G17090.5 CDS transmembrane protein, putative
At1g17100	chr1:005844766	0.0	W/5844766-5845034,5845110-5845539	AT1G17100.1 CDS SOUL heme-binding family protein [TAIR10] CDS gene_syn F20D23.21, F20D23_21 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_process biological_process|GO:0008150||ND go_function binding|GO:0005488||ISS product SOUL heme-binding family protein note SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G78450.1); Has 1318 Blast hits to 1294 proteins in 131 species: Archae - 15; Bacteria - 114; Metazoa - 250; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). protein_id AT1G17100.1p transcript_id AT1G17100.1 protein_id AT1G17100.1p transcript_id AT1G17100.1
At1g17110	chr1:005845816	0.0	C/5845816-5846362,5846449-5846510,5846592-5846804,5846905-5846989,5847070-5847227,5847317-5847440,5847557-5847719,5847810-5847895,5848031-5848119,5848200-5848339,5848414-5848512,5848603-5848780,5848906-5849299,5849441-5849889	AT1G17110.2 CDS ubiquitin-specific protease 15 [TAIR10] CDS gene_syn F20D23.20, F20D23_20, UBIQUITIN-SPECIFIC PROTEASE 15, UBP15, ubiquitin-specific protease 15 gene UBP15 function Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant. go_component nucleus|GO:0005634|18485060|IDA go_component cytoplasm|GO:0005737|18485060|IDA go_process cell proliferation|GO:0008283|18485060|IMP go_process flower development|GO:0009908|18485060|IMP go_process fruit development|GO:0010154|18485060|IMP go_process protein deubiquitination|GO:0016579|18485060|IDA go_process root development|GO:0048364|18485060|IMP go_process leaf development|GO:0048366|18485060|IMP go_process shoot development|GO:0048367|18485060|IMP go_function ubiquitin-specific protease activity|GO:0004843|18485060|IDA go_function ubiquitin-specific protease activity|GO:0004843||ISS product ubiquitin-specific protease 15 note ubiquitin-specific protease 15 (UBP15); CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1). protein_id AT1G17110.2p transcript_id AT1G17110.2 protein_id AT1G17110.2p transcript_id AT1G17110.2
At1g17110	chr1:005845816	0.0	C/5845816-5846362,5846449-5846510,5846592-5846804,5846905-5846989,5847070-5847227,5847317-5847440,5847557-5847719,5847810-5847895,5848031-5848119,5848212-5848339,5848414-5848512,5848603-5848780,5848906-5849299,5849441-5849889	AT1G17110.1 CDS ubiquitin-specific protease 15 [TAIR10] CDS gene_syn F20D23.20, F20D23_20, UBIQUITIN-SPECIFIC PROTEASE 15, UBP15, ubiquitin-specific protease 15 gene UBP15 function Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant. go_component nucleus|GO:0005634|18485060|IDA go_component cytoplasm|GO:0005737|18485060|IDA go_process cell proliferation|GO:0008283|18485060|IMP go_process flower development|GO:0009908|18485060|IMP go_process fruit development|GO:0010154|18485060|IMP go_process protein deubiquitination|GO:0016579|18485060|IDA go_process root development|GO:0048364|18485060|IMP go_process leaf development|GO:0048366|18485060|IMP go_process shoot development|GO:0048367|18485060|IMP go_function ubiquitin-specific protease activity|GO:0004843|18485060|IDA go_function ubiquitin-specific protease activity|GO:0004843||ISS product ubiquitin-specific protease 15 note ubiquitin-specific protease 15 (UBP15); CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1); Has 7942 Blast hits to 7177 proteins in 265 species: Archae - 0; Bacteria - 54; Metazoa - 4137; Fungi - 1242; Plants - 1075; Viruses - 7; Other Eukaryotes - 1427 (source: NCBI BLink). protein_id AT1G17110.1p transcript_id AT1G17110.1 protein_id AT1G17110.1p transcript_id AT1G17110.1
AT1G17110	chr1:005845816	0.0	C/5845816-5846362,5846449-5846510,5846592-5846804,5846905-5846989,5847070-5847227,5847317-5847440,5847557-5847719,5847810-5847895,5848031-5848119,5848212-5848339,5848414-5848512,5848603-5848780,5848906-5849299,5849441-5849889	AT1G17110.3 AT1G17110.3 CDS ubiquitin-specific protease 15
At1g17120	chr1:005851964	0.0	W/5851964-5853736	AT1G17120.1 CDS cationic amino acid transporter 8 [TAIR10] CDS gene_syn CAT8, F20D23.19, F20D23_19, cationic amino acid transporter 8 gene CAT8 function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. go_component plasma membrane|GO:0005886|17151019|IDA go_process transport|GO:0006810||IEA go_process amino acid transport|GO:0006865||IEA go_process transmembrane transport|GO:0055085||IEA go_component plasma membrane|GO:0005886|15377779|IDA go_component intracellular membrane-bounded organelle|GO:0043231|15377779|IDA go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS product cationic amino acid transporter 8 note cationic amino acid transporter 8 (CAT8); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: intracellular membrane-bounded organelle, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 5 (TAIR:AT2G34960.1); Has 31846 Blast hits to 31753 proteins in 2313 species: Archae - 496; Bacteria - 26086; Metazoa - 1876; Fungi - 1926; Plants - 406; Viruses - 0; Other Eukaryotes - 1056 (source: NCBI BLink). protein_id AT1G17120.1p transcript_id AT1G17120.1 protein_id AT1G17120.1p transcript_id AT1G17120.1
At1g17130	chr1:005854264	0.0	W/5854264-5854461,5854865-5855035,5855138-5855272,5855415-5855480,5855731-5855781,5855878-5856003,5856110-5856173,5856267-5856472	AT1G17130.2 CDS coiled-coil protein (DUF572) [TAIR10] CDS gene_syn F20D23.18, F20D23_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Family of unknown function (DUF572) note Family of unknown function (DUF572) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1391 Blast hits to 1324 proteins in 252 species: Archae - 3; Bacteria - 52; Metazoa - 454; Fungi - 341; Plants - 148; Viruses - 5; Other Eukaryotes - 388 (source: NCBI BLink). protein_id AT1G17130.2p transcript_id AT1G17130.2 protein_id AT1G17130.2p transcript_id AT1G17130.2
At1g17130	chr1:005854264	0.0	W/5854264-5854461,5854886-5855035,5855138-5855272,5855415-5855480,5855731-5855781,5855878-5856003,5856110-5856173,5856267-5856472	AT1G17130.1 CDS coiled-coil protein (DUF572) [TAIR10] CDS gene_syn F20D23.18, F20D23_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Family of unknown function (DUF572) note Family of unknown function (DUF572) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1377 Blast hits to 1314 proteins in 254 species: Archae - 0; Bacteria - 51; Metazoa - 442; Fungi - 351; Plants - 150; Viruses - 5; Other Eukaryotes - 378 (source: NCBI BLink). protein_id AT1G17130.1p transcript_id AT1G17130.1 protein_id AT1G17130.1p transcript_id AT1G17130.1
At1g17140	chr1:005856740	0.0	C/5856740-5857760,5857848-5857861	AT1G17140.1 CDS interactor of constitutive active rops 1 [TAIR10] CDS gene_syn F20D23.32, ICR1, RIP1, ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 gene ICR1 function Encodes a ROP/RAC effector, designated interactor of constitutive active ROPs 1 (ICR1), that interacts with GTP-bound ROPs. ICR1 is a scaffold mediating formation of protein complexes that are required for cell polarity. ICR1 is comprised of coiled-coil domains and forms complexes with itself and the exocyst vesicle-tethering complex subunit SEC3. go_component nucleus|GO:0005634|19825600|IDA go_component plasma membrane|GO:0005886|17493810|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product interactor of constitutive active rops 1 note interactor of constitutive active rops 1 (ICR1); BEST Arabidopsis thaliana protein match is: ROP interactive partner 2 (TAIR:AT1G78430.1); Has 53861 Blast hits to 29615 proteins in 2229 species: Archae - 901; Bacteria - 7093; Metazoa - 25838; Fungi - 5211; Plants - 3173; Viruses - 136; Other Eukaryotes - 11509 (source: NCBI BLink). protein_id AT1G17140.1p transcript_id AT1G17140.1 protein_id AT1G17140.1p transcript_id AT1G17140.1
At1g17140	chr1:005856740	0.0	C/5856740-5857760,5857848-5857861	AT1G17140.2 CDS interactor of constitutive active rops 1 [TAIR10] CDS gene_syn F20D23.32, ICR1, RIP1, ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 gene ICR1 function Encodes a ROP/RAC effector, designated interactor of constitutive active ROPs 1 (ICR1), that interacts with GTP-bound ROPs. ICR1 is a scaffold mediating formation of protein complexes that are required for cell polarity. ICR1 is comprised of coiled-coil domains and forms complexes with itself and the exocyst vesicle-tethering complex subunit SEC3. go_component nucleus|GO:0005634|19825600|IDA go_component plasma membrane|GO:0005886|17493810|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product interactor of constitutive active rops 1 note interactor of constitutive active rops 1 (ICR1); BEST Arabidopsis thaliana protein match is: ROP interactive partner 2 (TAIR:AT1G78430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G17140.2p transcript_id AT1G17140.2 protein_id AT1G17140.2p transcript_id AT1G17140.2
AT1G17145	chr1:005860351	0.0	C/5860351-5860490,5860596-5860689,5860772-5860838,5861173-5861239,5861336-5861486,5861585-5861666,5861756-5861801,5861890-5861941,5862038-5862241	AT1G17145.2 AT1G17145.2 CDS RING/U-box superfamily protein
At1g17145	chr1:005860351	0.0	C/5860351-5860689,5860772-5860838,5861173-5861239,5861336-5861486,5861585-5861666,5861756-5861801,5861890-5861941,5862038-5862241	AT1G17145.1 CDS RING/U-box superfamily protein [TAIR10] CDS go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G78420.2); Has 249 Blast hits to 247 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 148; Plants - 77; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G17145.1p transcript_id AT1G17145.1 protein_id AT1G17145.1p transcript_id AT1G17145.1
At1g17147	chr1:005863654	0.0	C/5863654-5863950	AT1G17147.1 CDS VQ motif-containing protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product VQ motif-containing protein note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G78410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G17147.1p transcript_id AT1G17147.1 protein_id AT1G17147.1p transcript_id AT1G17147.1
At1g17150	chr1:005865707	0.0	W/5865707-5865856,5866190-5866498,5866658-5867176,5867265-5867495	AT1G17150.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn F20D23.15, F20D23_15 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function polygalacturonase activity|GO:0004650||IEA go_process carbohydrate metabolic process|GO:0005975||ISS go_function polygalacturonase activity|GO:0004650||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G43080.1); Has 3925 Blast hits to 3904 proteins in 469 species: Archae - 4; Bacteria - 1051; Metazoa - 14; Fungi - 1254; Plants - 1494; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). protein_id AT1G17150.1p transcript_id AT1G17150.1 protein_id AT1G17150.1p transcript_id AT1G17150.1
At1g17160	chr1:005867678	0.0	W/5867678-5868340,5868534-5868719,5868845-5869040,5869121-5869215	AT1G17160.1 CDS pfkB-like carbohydrate kinase family protein [TAIR10] CDS gene_syn F20D23.14, F20D23_14 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_process D-ribose metabolic process|GO:0006014||IEA go_process D-ribose catabolic process|GO:0019303||IEA go_function ribokinase activity|GO:0004747||IEA go_function kinase activity|GO:0016301||ISS product pfkB-like carbohydrate kinase family protein note pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, D-ribose catabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 24314 Blast hits to 24305 proteins in 2661 species: Archae - 422; Bacteria - 18834; Metazoa - 425; Fungi - 293; Plants - 520; Viruses - 0; Other Eukaryotes - 3820 (source: NCBI BLink). protein_id AT1G17160.1p transcript_id AT1G17160.1 protein_id AT1G17160.1p transcript_id AT1G17160.1
At1g17160	chr1:005867678	0.0	W/5867678-5868340,5868534-5868719,5868845-5869040,5869153-5869175	AT1G17160.2 CDS pfkB-like carbohydrate kinase family protein [TAIR10] CDS gene_syn F20D23.14, F20D23_14 go_component chloroplast|GO:0009507|18431481|IDA go_process D-ribose metabolic process|GO:0006014||IEA go_function ribokinase activity|GO:0004747||IEA go_function kinase activity|GO:0016301||ISS product pfkB-like carbohydrate kinase family protein note pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 20525 Blast hits to 20525 proteins in 2560 species: Archae - 370; Bacteria - 15982; Metazoa - 398; Fungi - 241; Plants - 483; Viruses - 0; Other Eukaryotes - 3051 (source: NCBI BLink). protein_id AT1G17160.2p transcript_id AT1G17160.2 protein_id AT1G17160.2p transcript_id AT1G17160.2
At1g17170	chr1:005869895	0.0	W/5869895-5870209,5870350-5870691	AT1G17170.1 CDS glutathione S-transferase TAU 24 [TAIR10] CDS gene_syn ATGSTU24, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, F20D23.13, F20D23_13, GST, GSTU24, glutathione S-transferase TAU 24 gene GSTU24 function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). go_function glutathione binding|GO:0043295|15159623|IDA go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_process response to cyclopentenone|GO:0010583|18334669|IEP go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase TAU 24 note glutathione S-transferase TAU 24 (GSTU24); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: response to cyclopentenone, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 25 (TAIR:AT1G17180.1); Has 6259 Blast hits to 6243 proteins in 1151 species: Archae - 0; Bacteria - 2699; Metazoa - 624; Fungi - 140; Plants - 2013; Viruses - 0; Other Eukaryotes - 783 (source: NCBI BLink). protein_id AT1G17170.1p transcript_id AT1G17170.1 protein_id AT1G17170.1p transcript_id AT1G17170.1
At1g17180	chr1:005872208	0.0	W/5872208-5872522,5872608-5872958	AT1G17180.1 CDS glutathione S-transferase TAU 25 [TAIR10] CDS gene_syn ATGSTU25, F20D23.12, F20D23_12, GSTU25, glutathione S-transferase TAU 25 gene GSTU25 function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_process response to cyclopentenone|GO:0010583|18334669|IEP go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase TAU 25 note glutathione S-transferase TAU 25 (GSTU25); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 24 (TAIR:AT1G17170.1); Has 6324 Blast hits to 6297 proteins in 1135 species: Archae - 0; Bacteria - 2853; Metazoa - 581; Fungi - 157; Plants - 1982; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink). protein_id AT1G17180.1p transcript_id AT1G17180.1 protein_id AT1G17180.1p transcript_id AT1G17180.1
At1g17190	chr1:005875452	0.0	W/5875452-5875769,5876031-5876375	AT1G17190.1 CDS glutathione S-transferase tau 26 [TAIR10] CDS gene_syn ATGSTU26, F20D23.11, F20D23_11, GSTU26, glutathione S-transferase tau 26 gene GSTU26 function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_process response to cold|GO:0009409|16538523|IEP go_process response to herbicide|GO:0009635|16538523|IEP go_function glutathione transferase activity|GO:0004364|16538523|IDA go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase tau 26 note glutathione S-transferase tau 26 (GSTU26); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 25 (TAIR:AT1G17180.1); Has 5496 Blast hits to 5481 proteins in 1084 species: Archae - 0; Bacteria - 2439; Metazoa - 409; Fungi - 139; Plants - 1934; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink). protein_id AT1G17190.1p transcript_id AT1G17190.1 protein_id AT1G17190.1p transcript_id AT1G17190.1
At1g17200	chr1:005878493	0.0	W/5878493-5878710,5879397-5879517,5879596-5879871	AT1G17200.1 CDS Uncharacterised protein family (UPF0497) [TAIR10] CDS gene_syn F20D23.10, F20D23_10 go_process response to karrikin|GO:0080167|20351290|IEP go_function protein binding|GO:0005515|19617588|IPI product Uncharacterised protein family (UPF0497) note Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G14380.1); Has 681 Blast hits to 681 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 681; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17200.1p transcript_id AT1G17200.1 protein_id AT1G17200.1p transcript_id AT1G17200.1
At1g17200	chr1:005879461	0.0	W/5879461-5879517,5879596-5879871	AT1G17200.2 CDS Uncharacterised protein family (UPF0497) [TAIR10] CDS gene_syn F20D23.10, F20D23_10 go_process response to karrikin|GO:0080167|20351290|IEP go_function protein binding|GO:0005515|19617588|IPI product Uncharacterised protein family (UPF0497) note Uncharacterised protein family (UPF0497); FUNCTIONS IN: protein binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G14380.1). protein_id AT1G17200.2p transcript_id AT1G17200.2 protein_id AT1G17200.2p transcript_id AT1G17200.2
At1g17210	chr1:005880502	0.0	C/5880502-5880573,5880666-5880916,5881007-5882780,5882861-5883195,5883510-5883636,5884129-5884294,5884506-5884657	AT1G17210.1 CDS IAP-like protein 1 [TAIR10] CDS gene_syn ARABIDOPSIS IAP-LIKE PROTEIN, ATILP1, F20D23.9, F20D23_9, IAP-like protein 1, ILP1 gene ILP1 go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634|15469496|IDA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component phragmoplast|GO:0009524|15469496|IDA product IAP-like protein 1 note IAP-like protein 1 (ILP1); FUNCTIONS IN: zinc ion binding; LOCATED IN: cytosol, nucleus, phragmoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC-like (InterPro:IPR012935), Proteinase inhibitor I32, inhibitor of apoptosis (InterPro:IPR001370); BEST Arabidopsis thaliana protein match is: C3HC zinc finger-like (TAIR:AT1G48950.1); Has 488 Blast hits to 287 proteins in 104 species: Archae - 2; Bacteria - 11; Metazoa - 108; Fungi - 61; Plants - 97; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink). protein_id AT1G17210.1p transcript_id AT1G17210.1 protein_id AT1G17210.1p transcript_id AT1G17210.1
At1g17220	chr1:005885383	0.0	W/5885383-5886924,5887046-5887078,5887261-5887374,5887544-5887693,5887764-5887862,5887952-5888014,5888297-5888452,5888553-5888618,5888792-5889028,5889131-5889406,5889669-5889857,5890010-5890165	AT1G17220.1 CDS Translation initiation factor 2, small GTP-binding protein [TAIR10] CDS gene_syn F20D23.8, F20D23_8, FUG1, fu-gaeri1 gene FUG1 function Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component chloroplast|GO:0009507|17416734|IDA go_process translational initiation|GO:0006413|17416734|IGI go_function translation initiation factor activity|GO:0003743|17416734|IGI go_function translation initiation factor activity|GO:0003743||ISS product Translation initiation factor 2, small GTP-binding protein note fu-gaeri1 (FUG1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF-2, N-terminal (InterPro:IPR006847), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation initiation factor 2, small GTP-binding protein (TAIR:AT4G11160.1); Has 64472 Blast hits to 64325 proteins in 4737 species: Archae - 1215; Bacteria - 42273; Metazoa - 2198; Fungi - 2344; Plants - 1110; Viruses - 4; Other Eukaryotes - 15328 (source: NCBI BLink). protein_id AT1G17220.1p transcript_id AT1G17220.1 protein_id AT1G17220.1p transcript_id AT1G17220.1
At1g17230	chr1:005891375	0.0	W/5891375-5894288,5894368-5894751,5894848-5894855	AT1G17230.1 CDS Leucine-rich receptor-like protein kinase family protein [TAIR10] CDS gene_syn F20D23.7, F20D23_7 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function protein kinase activity|GO:0004672||ISS product Leucine-rich receptor-like protein kinase family protein note Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G17230.1p transcript_id AT1G17230.1 protein_id AT1G17230.1p transcript_id AT1G17230.1
AT1G17230	chr1:005891375	0.0	W/5891375-5894288,5894368-5894855	AT1G17230.2 AT1G17230.2 CDS Leucine-rich receptor-like protein kinase family protein
AT1G17230	chr1:005891375	0.0	W/5891375-5894296	AT1G17230.3 AT1G17230.3 CDS Leucine-rich receptor-like protein kinase family protein
At1g17232	chr1:005892300	0.0	C/5892300-5892893,5893018-5893652	AT1G17232.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G17230 product other RNA transcript_id AT1G17232.1
At1g17235	chr1:005895351	0.0	W/5895351-5895710	AT1G17235.1 CDS ROTUNDIFOLIA like 11 [TAIR10] CDS gene_syn ROTUNDIFOLIA like 11, RTFL11 gene RTFL11 function This gene is predicted to encode a small protein with a DVL domain found in the DVL / RTFL protein family. Over-expression analyses using truncated versions of a related family member, ROT4, suggest that the DVL / RTF domain is involved in regulating cell proliferation. go_component cellular_component|GO:0005575||ND go_process regulation of cell proliferation|GO:0042127|15125775|ISS go_function molecular_function|GO:0003674||ND product ROTUNDIFOLIA like 11 note ROTUNDIFOLIA like 11 (RTFL11); Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17235.1p transcript_id AT1G17235.1 protein_id AT1G17235.1p transcript_id AT1G17235.1
At1g17240	chr1:005896528	0.0	C/5896528-5898717	AT1G17240.1 CDS receptor like protein 2 [TAIR10] CDS gene_syn AtRLP2, F20D23.6, F20D23_6, RLP2, receptor like protein 2 gene RLP2 function Encodes a CLAVATA2 (CLV2)-related gene. Complements the clv2 mutant when expressed under the control of the CLV2 promoter. go_process signal transduction|GO:0007165|11751054|IC go_function protein kinase activity|GO:0004672||ISS product receptor like protein 2 note receptor like protein 2 (RLP2); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G72300.1); Has 90767 Blast hits to 27052 proteins in 1087 species: Archae - 40; Bacteria - 7835; Metazoa - 18686; Fungi - 1120; Plants - 55519; Viruses - 2; Other Eukaryotes - 7565 (source: NCBI BLink). protein_id AT1G17240.1p transcript_id AT1G17240.1 protein_id AT1G17240.1p transcript_id AT1G17240.1
AT1G17240	chr1:005896528	0.0	C/5896528-5898732	AT1G17240.2 AT1G17240.2 CDS receptor like protein 2
At1g17255	chr1:005899994	0.0	W/5899994-5900025,5900134-5900391,5900482-5900655,5900737-5900886,5901162-5903619	AT1G17255.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G17250 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G17255.1
At1g17250	chr1:005901169	0.0	C/5901169-5903439	AT1G17250.1 CDS receptor like protein 3 [TAIR10] CDS gene_syn AtRLP3, F20D23.5, F20D23_5, RLP3, receptor like protein 3 gene RLP3 go_process signal transduction|GO:0007165|11751054|IC go_function protein kinase activity|GO:0004672||ISS product receptor like protein 3 note receptor like protein 3 (RLP3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 2 (TAIR:AT1G17240.1); Has 81484 Blast hits to 24794 proteins in 958 species: Archae - 37; Bacteria - 4331; Metazoa - 15807; Fungi - 760; Plants - 53957; Viruses - 2; Other Eukaryotes - 6590 (source: NCBI BLink). protein_id AT1G17250.1p transcript_id AT1G17250.1 protein_id AT1G17250.1p transcript_id AT1G17250.1
At1g17260	chr1:005904058	0.0	W/5904058-5904123,5904211-5904330,5904418-5904516,5904606-5904743,5904840-5904974,5905065-5905244,5905343-5905549,5905651-5905770,5905892-5906011,5906100-5906222,5906336-5906440,5906566-5906710,5906825-5906986,5907076-5907314,5907477-5907509,5907601-5907682,5907766-5907926,5908009-5908182,5908277-5908459,5908560-5908714,5908802-5908898	AT1G17260.1 CDS autoinhibited H(+)-ATPase isoform 10 [TAIR10] CDS gene_syn AHA10, F20D23.4, F20D23_4, autoinhibited H(+)-ATPase isoform 10 gene AHA10 function belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process go_component chloroplast|GO:0009507|15028209|IDA go_process vacuole organization|GO:0007033|15695592|IMP go_process vacuolar acidification|GO:0007035|15695592|IMP go_process proanthocyanidin biosynthetic process|GO:0010023|15695592|IMP go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662|7969026|ISS go_function ATPase activity|GO:0016887||ISS go_function cation-transporting ATPase activity|GO:0019829|7969026|ISS product autoinhibited H(+)-ATPase isoform 10 note autoinhibited H(+)-ATPase isoform 10 (AHA10); FUNCTIONS IN: ATPase activity, cation-transporting ATPase activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: vacuole organization, vacuolar acidification, proanthocyanidin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 8 (TAIR:AT3G42640.1); Has 37639 Blast hits to 33046 proteins in 3187 species: Archae - 705; Bacteria - 24196; Metazoa - 3861; Fungi - 2534; Plants - 1888; Viruses - 3; Other Eukaryotes - 4452 (source: NCBI BLink). protein_id AT1G17260.1p transcript_id AT1G17260.1 protein_id AT1G17260.1p transcript_id AT1G17260.1
AT1G17260	chr1:005904058	0.0	W/5904058-5904123,5904211-5904330,5904418-5904516,5904606-5904743,5904840-5904974,5905065-5905244,5905343-5905549,5905651-5905770,5905892-5906011,5906100-5906222,5906336-5906440,5906566-5906710,5906825-5906986,5907076-5907314,5907477-5907509,5907601-5907682,5907766-5907926,5908009-5908182,5908277-5908459,5908560-5908714,5908802-5908898	AT1G17260.2 AT1G17260.2 CDS autoinhibited H(+)-ATPase isoform 10
AT1G17260	chr1:005904058	0.0	W/5904058-5904123,5904211-5904330,5904418-5904516,5904606-5904743,5904840-5904974,5905065-5905244,5905343-5905549,5905651-5905770,5905892-5906011,5906100-5906222,5906336-5906440,5906566-5906710,5906825-5906986,5907076-5907314,5907477-5907509,5907601-5907682,5907766-5907926,5908009-5908182,5908277-5908459,5908560-5908714,5908802-5908898	AT1G17260.3 AT1G17260.3 CDS autoinhibited H(+)-ATPase isoform 10
AT1G17260	chr1:005904058	0.0	W/5904058-5904123,5904211-5904330,5904418-5904516,5904606-5904743,5904840-5904974,5905065-5905244,5905343-5905549,5905651-5905770,5905892-5906011,5906100-5906222,5906336-5906440,5906566-5906710,5906825-5906986,5907076-5907314,5907477-5907509,5907601-5907682,5907766-5907926,5908009-5908182,5908277-5908459,5908560-5908714,5908802-5908898	AT1G17260.4 AT1G17260.4 CDS autoinhibited H(+)-ATPase isoform 10
At1g17270	chr1:005909443	0.0	C/5909443-5909619,5909812-5910061,5910357-5911624	AT1G17270.1 CDS O-fucosyltransferase family protein [TAIR10] CDS gene_syn F20D23.3, F20D23_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product O-fucosyltransferase family protein note O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G50420.1); Has 98 Blast hits to 96 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G17270.1p transcript_id AT1G17270.1 protein_id AT1G17270.1p transcript_id AT1G17270.1
AT1G17270	chr1:005909443	0.0	C/5909443-5909619,5909812-5910061,5910357-5911624	AT1G17270.2 AT1G17270.2 CDS O-fucosyltransferase family protein
At1g17275	chr1:005912053	0.0	W/5912053-5915313	AT1G17275.1 [TAIR10] mRNA
At1g17275	chr1:005912053	0.0	W/5912053-5915313	AT1G17275 [TAIR10] TE pseudo gene_syn F20D23.2, F20D23_2 note Transposable element gene, Mutator-like transposase family, has a 5.8e-31 P-value blast match to GB:AAA21566 mudrA of transposon="MuDR" (MuDr-element) (Zea mays)
At1g17277	chr1:005915644	0.0	C/5915644-5915943,5916015-5916212	AT1G17277.1 [TAIR10] mRNA
At1g17277	chr1:005915644	0.0	C/5915644-5916212	AT1G17277 [TAIR10] TE pseudo note Transposable element gene, similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G78355.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Zinc finger, GRF-type; (InterPro:IPR010666)
At1g17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.1 CDS ubiquitin-conjugating enzyme 34 [TAIR10] CDS gene_syn F20D23.1, F20D23_1, UBC34, ubiquitin-conjugating enzyme 34 gene UBC34 go_component cellular_component|GO:0005575||ND go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA go_function ubiquitin-protein ligase activity|GO:0004842||ISS product ubiquitin-conjugating enzyme 34 note ubiquitin-conjugating enzyme 34 (UBC34); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2); Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0; Bacteria - 0; Metazoa - 3285; Fungi - 1587; Plants - 1489; Viruses - 20; Other Eukaryotes - 1218 (source: NCBI BLink). protein_id AT1G17280.1p transcript_id AT1G17280.1 protein_id AT1G17280.1p transcript_id AT1G17280.1
At1g17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.2 CDS ubiquitin-conjugating enzyme 34 [TAIR10] CDS gene_syn F20D23.1, F20D23_1, UBC34, ubiquitin-conjugating enzyme 34 gene UBC34 go_component cellular_component|GO:0005575||ND go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA go_function ubiquitin-protein ligase activity|GO:0004842||ISS product ubiquitin-conjugating enzyme 34 note ubiquitin-conjugating enzyme 34 (UBC34); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2); Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0; Bacteria - 0; Metazoa - 3285; Fungi - 1587; Plants - 1489; Viruses - 20; Other Eukaryotes - 1218 (source: NCBI BLink). protein_id AT1G17280.2p transcript_id AT1G17280.2 protein_id AT1G17280.2p transcript_id AT1G17280.2
AT1G17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.3 AT1G17280.3 CDS ubiquitin-conjugating enzyme 34
AT1G17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.5 AT1G17280.5 CDS ubiquitin-conjugating enzyme 34
AT1G17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.6 AT1G17280.6 CDS ubiquitin-conjugating enzyme 34
AT1G17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.7 AT1G17280.7 CDS ubiquitin-conjugating enzyme 34
AT1G17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.8 AT1G17280.8 CDS ubiquitin-conjugating enzyme 34
AT1G17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.9 AT1G17280.9 CDS ubiquitin-conjugating enzyme 34
AT1G17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918021,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.4 AT1G17280.4 CDS ubiquitin-conjugating enzyme 34
AT1G17285	chr1:005920715	0.0	W/5920715-5921112,5921218-5921287	AT1G17285.2 AT1G17285.2 CDS transmembrane protein, putative
At1g17285	chr1:005920895	0.0	W/5920895-5921112,5921218-5921287	AT1G17285.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G17285.1p transcript_id AT1G17285.1 protein_id AT1G17285.1p transcript_id AT1G17285.1
At1g17290	chr1:005922771	0.0	W/5922771-5922992,5923592-5923642,5923721-5923771,5923860-5923925,5924003-5924064,5924151-5924229,5924307-5924411,5924500-5924610,5924739-5924876,5924972-5925167,5925261-5925415,5925526-5925600,5925681-5925884,5925977-5926093	AT1G17290.1 CDS alanine aminotransferas [TAIR10] CDS gene_syn ALANINE AMINOTRANSFERAS, AlaAT1, T13M22.3, T13M22_3, alanine aminotransferas gene AlaAT1 function Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia go_component mitochondrion|GO:0005739|17137349|IDA go_component mitochondrion|GO:0005739|18385124|IDA go_component chloroplast|GO:0009507|15028209|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_process response to cadmium ion|GO:0046686|17075075|IEP go_function ATP binding|GO:0005524|17137349|IDA go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_process response to hypoxia|GO:0001666|17319845|IEP go_process L-alanine catabolic process, by transamination|GO:0019481|17319845|IMP go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|17319845|IDA go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021||ISS product alanine aminotransferas note alanine aminotransferas (AlaAT1); FUNCTIONS IN: L-alanine:2-oxoglutarate aminotransferase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to hypoxia, L-alanine catabolic process, by transamination; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: alanine aminotransferase 2 (TAIR:AT1G72330.1); Has 28241 Blast hits to 28232 proteins in 2888 species: Archae - 752; Bacteria - 19527; Metazoa - 637; Fungi - 692; Plants - 1303; Viruses - 0; Other Eukaryotes - 5330 (source: NCBI BLink). protein_id AT1G17290.1p transcript_id AT1G17290.1 protein_id AT1G17290.1p transcript_id AT1G17290.1
AT1G17300	chr1:005926904	0.0	W/5926904-5927290,5927387-5927440	AT1G17300.2 AT1G17300.2 CDS hypothetical protein
At1g17300	chr1:005926994	0.0	W/5926994-5927290,5927387-5927440	AT1G17300.1 CDS hypothetical protein [TAIR10] CDS gene_syn T13M22.4, T13M22_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17285.1); Has 27 Blast hits to 27 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17300.1p transcript_id AT1G17300.1 protein_id AT1G17300.1p transcript_id AT1G17300.1
At1g17310	chr1:005928014	0.0	C/5928014-5928667	AT1G17310.1 CDS MADS-box transcription factor family protein [TAIR10] CDS gene_syn T13M22.2, T13M22_2 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product MADS-box transcription factor family protein note MADS-box transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: antipodal cell, sperm cell, carpel, female gametophyte; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT1G72350.1); Has 5468 Blast hits to 5468 proteins in 649 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 303; Plants - 4468; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). protein_id AT1G17310.1p transcript_id AT1G17310.1 protein_id AT1G17310.1p transcript_id AT1G17310.1
AT1G17310	chr1:005928014	0.0	C/5928014-5928700	AT1G17310.2 AT1G17310.2 CDS MADS-box transcription factor family protein
At1g17330	chr1:005929966	0.0	W/5929966-5930127,5930281-5930311,5930404-5930422,5930803-5930900,5931027-5931125,5931257-5931429,5931509-5931595	AT1G17330.1 CDS Metal-dependent phosphohydrolase [TAIR10] CDS go_function catalytic activity|GO:0003824||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Metal-dependent phosphohydrolase note Metal-dependent phosphohydrolase; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); Has 1677 Blast hits to 1677 proteins in 841 species: Archae - 70; Bacteria - 1404; Metazoa - 0; Fungi - 90; Plants - 42; Viruses - 5; Other Eukaryotes - 66 (source: NCBI BLink). protein_id AT1G17330.1p transcript_id AT1G17330.1 protein_id AT1G17330.1p transcript_id AT1G17330.1
At1g17340	chr1:005934129	0.0	W/5934129-5934215,5934694-5934898,5934994-5935159,5935261-5935483,5935580-5935656,5935838-5936025,5936115-5936212,5936308-5936447,5936529-5936657,5936778-5937081,5937179-5937300,5937389-5937499,5937591-5937758,5937849-5938019,5938121-5938205,5938308-5938391	AT1G17340.1 CDS Phosphoinositide phosphatase family protein [TAIR10] CDS gene_syn F28G4.21, F28G4_21 go_component cellular_component|GO:0005575||ND go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS product Phosphoinositide phosphatase family protein note Phosphoinositide phosphatase family protein; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT3G14205.1); Has 1726 Blast hits to 1665 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 579; Plants - 272; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink). protein_id AT1G17340.1p transcript_id AT1G17340.1 protein_id AT1G17340.1p transcript_id AT1G17340.1
At1g17345	chr1:005940525	0.0	W/5940525-5940920	AT1G17345.1 CDS SAUR-like auxin-responsive protein family [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process response to auxin stimulus|GO:0009733||ISS go_function molecular_function|GO:0003674||ND product SAUR-like auxin-responsive protein family note SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G72430.1); Has 128 Blast hits to 128 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17345.1p transcript_id AT1G17345.1 protein_id AT1G17345.1p transcript_id AT1G17345.1
At1g17350	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.1 CDS NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [TAIR10] CDS gene_syn F28G4.20, F28G4_20 go_component mitochondrion|GO:0005739|14671022|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product NADH:ubiquinone oxidoreductase intermediate-associated protein 30 note NADH:ubiquinone oxidoreductase intermediate-associated protein 30; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857); BEST Arabidopsis thaliana protein match is: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (TAIR:AT1G72420.1); Has 552 Blast hits to 552 proteins in 198 species: Archae - 0; Bacteria - 134; Metazoa - 110; Fungi - 92; Plants - 100; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). protein_id AT1G17350.1p transcript_id AT1G17350.1 protein_id AT1G17350.1p transcript_id AT1G17350.1
AT1G17350	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.3 AT1G17350.3 CDS NADH:ubiquinone oxidoreductase intermediate-associated protein 30
AT1G17350	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.4 AT1G17350.4 CDS NADH:ubiquinone oxidoreductase intermediate-associated protein 30
AT1G17350	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.5 AT1G17350.5 CDS NADH:ubiquinone oxidoreductase intermediate-associated protein 30
At1g17350	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943903,5944084-5944233,5944289-5944330	AT1G17350.2 CDS NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [TAIR10] CDS gene_syn F28G4.20, F28G4_20 go_component mitochondrion|GO:0005739|14671022|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product NADH:ubiquinone oxidoreductase intermediate-associated protein 30 note NADH:ubiquinone oxidoreductase intermediate-associated protein 30; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857); BEST Arabidopsis thaliana protein match is: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (TAIR:AT1G72420.1); Has 442 Blast hits to 442 proteins in 172 species: Archae - 0; Bacteria - 91; Metazoa - 109; Fungi - 74; Plants - 102; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). protein_id AT1G17350.2p transcript_id AT1G17350.2 protein_id AT1G17350.2p transcript_id AT1G17350.2
At1g17360	chr1:005947441	0.0	W/5947441-5947499,5947582-5947767,5947856-5947956,5948053-5948080,5948166-5948318,5948398-5949215,5949366-5949910,5950009-5951176,5951272-5951399	AT1G17360.1 CDS LOW protein: protein phosphatase 1 regulatory subunit-like protein [TAIR10] CDS gene_syn F28G4.18, F28G4_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants - 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI BLink). protein_id AT1G17360.1p transcript_id AT1G17360.1 protein_id AT1G17360.1p transcript_id AT1G17360.1
At1g17370	chr1:005951842	0.0	C/5951842-5952114,5952208-5952384,5952475-5952558,5952686-5952798,5952912-5952942,5953035-5953110,5953203-5953290,5953385-5953446,5953547-5953623,5953740-5953842,5954218-5954279,5954721-5954825	AT1G17370.2 CDS oligouridylate binding protein 1B [TAIR10] CDS gene_syn F28G4.17, UBP1B, oligouridylate binding protein 1B gene UBP1B go_function mRNA 3'-UTR binding|GO:0003730|10747031|ISS product oligouridylate binding protein 1B note oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G17370.2p transcript_id AT1G17370.2 protein_id AT1G17370.2p transcript_id AT1G17370.2
At1g17370	chr1:005951842	0.0	C/5951842-5952114,5952208-5952384,5952475-5952560,5952679-5952798,5952912-5952942,5953035-5953110,5953203-5953290,5953385-5953446,5953547-5953623,5953740-5953842,5954218-5954279,5954721-5954825	AT1G17370.1 CDS oligouridylate binding protein 1B [TAIR10] CDS gene_syn F28G4.17, UBP1B, oligouridylate binding protein 1B gene UBP1B go_function mRNA 3'-UTR binding|GO:0003730|10747031|ISS product oligouridylate binding protein 1B note oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 681 Blast hits to 681 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 681; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17370.1p transcript_id AT1G17370.1 protein_id AT1G17370.1p transcript_id AT1G17370.1
At1g17380	chr1:005955654	0.0	C/5955654-5955885,5956053-5956376,5956497-5956587,5956893-5957070	AT1G17380.1 CDS jasmonate-zim-domain protein 5 [TAIR10] CDS gene_syn F28G4.16, JAZ5, TIFY11A, jasmonate-zim-domain protein 5 gene JAZ5 go_component cellular_component|GO:0005575||ND go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP go_function protein binding|GO:0005515|20360743|IPI product jasmonate-zim-domain protein 5 note jasmonate-zim-domain protein 5 (JAZ5); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 6 (TAIR:AT1G72450.1); Has 301 Blast hits to 296 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17380.1p transcript_id AT1G17380.1 protein_id AT1G17380.1p transcript_id AT1G17380.1
AT1G17380	chr1:005955654	0.0	C/5955654-5955885,5956053-5956376,5956497-5956678	AT1G17380.2 AT1G17380.2 CDS jasmonate-zim-domain protein 5
AT1G17380	chr1:005955986	0.0	C/5955986-5956376,5956497-5956587,5956893-5957070	AT1G17380.3 AT1G17380.3 CDS jasmonate-zim-domain protein 5
At1g17390	chr1:005958628	0.0	C/5958628-5959651	AT1G17390.1 [TAIR10] mRNA
At1g17390	chr1:005958628	0.0	C/5958628-5959651	AT1G17390 [TAIR10] TE pseudo gene_syn F28G4.15 note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
At1g17400	chr1:005960920	0.0	C/5960920-5960939,5961020-5961200,5961278-5961888,5962080-5962149,5962240-5962245	AT1G17400.1 CDS hypothetical protein [TAIR10] CDS gene_syn F28G4.14, F28G4_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G17400.1p transcript_id AT1G17400.1 protein_id AT1G17400.1p transcript_id AT1G17400.1
AT1G17400	chr1:005960920	0.0	C/5960920-5960939,5961020-5961200,5961278-5961888,5962080-5962149,5962240-5962245	AT1G17400.2 AT1G17400.2 CDS hypothetical protein
AT1G17400	chr1:005961269	0.0	C/5961269-5961888,5962080-5962149,5962240-5962245	AT1G17400.3 AT1G17400.3 CDS hypothetical protein
At1g17410	chr1:005968627	0.0	C/5968627-5968661,5968777-5968886,5969058-5969165,5969263-5969444	AT1G17410.2 CDS Nucleoside diphosphate kinase family protein [TAIR10] CDS gene_syn F28G4.12, F28G4_12 go_process GTP biosynthetic process|GO:0006183||IEA go_process UTP biosynthetic process|GO:0006228||IEA go_process CTP biosynthetic process|GO:0006241||IEA go_function nucleoside diphosphate kinase activity|GO:0004550||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside diphosphate kinase activity|GO:0004550||ISS go_function ATP binding|GO:0005524||ISS product Nucleoside diphosphate kinase family protein note Nucleoside diphosphate kinase family protein; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: UTP biosynthetic process, GTP biosynthetic process, CTP biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1). protein_id AT1G17410.2p transcript_id AT1G17410.2 protein_id AT1G17410.2p transcript_id AT1G17410.2
At1g17410	chr1:005968627	0.0	C/5968627-5968661,5968777-5968886,5969058-5969165,5969263-5969487,5969713-5969780	AT1G17410.1 CDS Nucleoside diphosphate kinase family protein [TAIR10] CDS gene_syn F28G4.12, F28G4_12 go_component endomembrane system|GO:0012505||IEA go_process GTP biosynthetic process|GO:0006183||IEA go_process UTP biosynthetic process|GO:0006228||IEA go_process CTP biosynthetic process|GO:0006241||IEA go_process nucleotide metabolic process|GO:0009117||IEA go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA go_process pyrimidine deoxyribonucleoside interconversion|GO:0019690||IEA go_function nucleoside diphosphate kinase activity|GO:0004550||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside diphosphate kinase activity|GO:0004550||ISS go_function ATP binding|GO:0005524||ISS product Nucleoside diphosphate kinase family protein note Nucleoside diphosphate kinase family protein; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1); Has 9030 Blast hits to 8806 proteins in 2558 species: Archae - 289; Bacteria - 4566; Metazoa - 1151; Fungi - 165; Plants - 382; Viruses - 117; Other Eukaryotes - 2360 (source: NCBI BLink). protein_id AT1G17410.1p transcript_id AT1G17410.1 protein_id AT1G17410.1p transcript_id AT1G17410.1
AT1G17410	chr1:005968970	0.0	C/5968970-5969165,5969263-5969444	AT1G17410.3 AT1G17410.3 CDS Nucleoside diphosphate kinase family protein
At1g17420	chr1:005977512	0.0	W/5977512-5977902,5978013-5978293,5978498-5978735,5978860-5979189,5979571-5979764,5979856-5980157,5980250-5980516,5980628-5981384	AT1G17420.1 CDS lipoxygenase 3 [TAIR10] CDS gene_syn F28G4.10, LOX3, lipoxygenase 3 gene LOX3 function Lipoxygenase go_component chloroplast|GO:0009507||IEA go_function iron ion binding|GO:0005506||IEA go_function lipoxygenase activity|GO:0016165||IEA go_function oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|GO:0016702||IEA go_function metal ion binding|GO:0046872||IEA go_process defense response|GO:0006952|9232884|TAS go_process response to wounding|GO:0009611|9232884|TAS go_process response to fungus|GO:0009620|19220788|IEP go_process jasmonic acid biosynthetic process|GO:0009695|8702864|TAS go_process growth|GO:0040007|9232884|TAS product lipoxygenase 3 note lipoxygenase 3 (LOX3); FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, response to fungus, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1); Has 1470 Blast hits to 1436 proteins in 179 species: Archae - 0; Bacteria - 76; Metazoa - 529; Fungi - 49; Plants - 787; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). protein_id AT1G17420.1p transcript_id AT1G17420.1 protein_id AT1G17420.1p transcript_id AT1G17420.1
At1g17430	chr1:005982310	0.0	W/5982310-5983035,5983155-5983247,5983553-5983620,5983808-5983919	AT1G17430.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F28G4.9 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function hydrolase activity|GO:0016787||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G72620.1); Has 4935 Blast hits to 4934 proteins in 1109 species: Archae - 58; Bacteria - 3571; Metazoa - 147; Fungi - 8; Plants - 323; Viruses - 0; Other Eukaryotes - 828 (source: NCBI BLink). protein_id AT1G17430.1p transcript_id AT1G17430.1 protein_id AT1G17430.1p transcript_id AT1G17430.1
At1g17440	chr1:005984407	0.0	C/5984407-5984589,5984680-5984715,5984855-5984916,5985016-5985094,5985191-5985265,5985354-5985968,5986447-5986659,5986875-5987663	AT1G17440.1 CDS Transcription initiation factor TFIID subunit A [TAIR10] CDS gene_syn EER4, ENHANCED ETHYLENE RESPONSE 4, F1L3.13, TAF12B, TBP-ASSOCIATED FACTOR 12B gene EER4 function Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression. go_function DNA binding|GO:0003677||IEA go_function transcription initiation factor activity|GO:0016986||IEA go_component nucleus|GO:0005634|17526916|IDA go_component transcription factor TFIID complex|GO:0005669||ISS go_process transcription initiation|GO:0006352||ISS go_process jasmonic acid mediated signaling pathway|GO:0009867|17526916|IMP go_process regulation of ethylene mediated signaling pathway|GO:0010104|17526916|IMP go_function transcription initiation factor activity|GO:0016986||ISS product Transcription initiation factor TFIID subunit A note ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: transcription initiation factor activity, DNA binding; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1); Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40; Bacteria - 5554; Metazoa - 31214; Fungi - 9645; Plants - 6795; Viruses - 322; Other Eukaryotes - 29938 (source: NCBI BLink). protein_id AT1G17440.1p transcript_id AT1G17440.1 protein_id AT1G17440.1p transcript_id AT1G17440.1
At1g17440	chr1:005984407	0.0	C/5984407-5984589,5984680-5984715,5984855-5984916,5985016-5985094,5985191-5985265,5985354-5985968,5986447-5986659,5986875-5987663	AT1G17440.2 CDS Transcription initiation factor TFIID subunit A [TAIR10] CDS gene_syn EER4, ENHANCED ETHYLENE RESPONSE 4, F1L3.13, TAF12B, TBP-ASSOCIATED FACTOR 12B gene EER4 function Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression. go_function DNA binding|GO:0003677||IEA go_function transcription initiation factor activity|GO:0016986||IEA go_component nucleus|GO:0005634|17526916|IDA go_component transcription factor TFIID complex|GO:0005669||ISS go_process transcription initiation|GO:0006352||ISS go_process jasmonic acid mediated signaling pathway|GO:0009867|17526916|IMP go_process regulation of ethylene mediated signaling pathway|GO:0010104|17526916|IMP go_function transcription initiation factor activity|GO:0016986||ISS product Transcription initiation factor TFIID subunit A note ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1); Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40; Bacteria - 5554; Metazoa - 31214; Fungi - 9645; Plants - 6795; Viruses - 322; Other Eukaryotes - 29938 (source: NCBI BLink). protein_id AT1G17440.2p transcript_id AT1G17440.2 protein_id AT1G17440.2p transcript_id AT1G17440.2
At1g17450	chr1:005988579	0.0	C/5988579-5988764,5988912-5988950,5989043-5989507,5989665-5989723,5989819-5990569,5990940-5991257,5991456-5991924,5992250-5992632,5992918-5993070,5993267-5993548,5993654-5994388,5994488-5995117,5995213-5995398,5995529-5995591,5995716-5995790,5995870-5996254,5996338-5996693	AT1G17450.2 CDS B-block binding subunit of TFIIIC [TAIR10] CDS gene_syn F28G4.7 go_function molecular_function|GO:0003674||ND product B-block binding subunit of TFIIIC note B-block binding subunit of TFIIIC; FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1). protein_id AT1G17450.2p transcript_id AT1G17450.2 protein_id AT1G17450.2p transcript_id AT1G17450.2
At1g17450	chr1:005988643	0.0	C/5988643-5988756,5988912-5988950,5989043-5989507,5989665-5989723,5989819-5990569,5990940-5991257,5991456-5991924,5992250-5992632,5992724-5992756,5992918-5993019,5993267-5993539,5993654-5993875,5993966-5994388,5994488-5995033,5995213-5995398,5995529-5995591,5995716-5995790,5995870-5996254,5996338-5996693	AT1G17450.1 CDS B-block binding subunit of TFIIIC [TAIR10] CDS gene_syn F28G4.7 go_function molecular_function|GO:0003674||ND product B-block binding subunit of TFIIIC note B-block binding subunit of TFIIIC; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1); Has 94 Blast hits to 81 proteins in 18 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G17450.1p transcript_id AT1G17450.1 protein_id AT1G17450.1p transcript_id AT1G17450.1
AT1G17450	chr1:005988858	0.0	C/5988858-5988950,5989043-5989507,5989665-5989723,5989819-5990569,5990940-5991257,5991456-5991924,5992250-5992632,5992918-5993070,5993267-5993548,5993654-5994388,5994488-5995117,5995213-5995398,5995529-5995591,5995716-5995790,5995870-5996254,5996338-5996693	AT1G17450.3 AT1G17450.3 CDS B-block binding subunit of TFIIIC
At1g17455	chr1:005997932	0.0	W/5997932-5998276	AT1G17455.1 CDS ELF4-like 4 [TAIR10] CDS gene_syn ELF4-L4, ELF4-like 4 gene ELF4-L4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product ELF4-like 4 note ELF4-like 4 (ELF4-L4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 2 (TAIR:AT1G72630.1); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G17455.1p transcript_id AT1G17455.1 protein_id AT1G17455.1p transcript_id AT1G17455.1
At1g17455	chr1:005997932	0.0	W/5997932-5998276	AT1G17455.2 CDS ELF4-like 4 [TAIR10] CDS gene_syn ELF4-L4, ELF4-like 4 gene ELF4-L4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product ELF4-like 4 note ELF4-like 4 (ELF4-L4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 2 (TAIR:AT1G72630.1); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G17455.2p transcript_id AT1G17455.2 protein_id AT1G17455.2p transcript_id AT1G17455.2
At1g17460	chr1:005999519	0.0	W/5999519-5999638,5999777-5999951,6000050-6000109,6000287-6000345,6000469-6001320,6001534-6001668,6001909-6002184,6002266-6002310,6002394-6002546	AT1G17460.2 CDS TRF-like 3 [TAIR10] CDS gene_syn F28G4.5, TRF-like 3, TRFL3 gene TRFL3 function Arabidopsis thaliana myb family transcription factor (At1g17460) go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product TRF-like 3 note TRF-like 3 (TRFL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2). protein_id AT1G17460.2p transcript_id AT1G17460.2 protein_id AT1G17460.2p transcript_id AT1G17460.2
At1g17460	chr1:005999519	0.0	W/5999519-5999638,5999777-5999951,6000287-6000345,6000469-6001320,6001534-6001668,6001909-6002184,6002266-6002310,6002394-6002546	AT1G17460.1 CDS TRF-like 3 [TAIR10] CDS gene_syn F28G4.5, TRF-like 3, TRFL3 gene TRFL3 function Arabidopsis thaliana myb family transcription factor (At1g17460) go_component cytosolic ribosome|GO:0022626|15734919|IDA go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product TRF-like 3 note TRF-like 3 (TRFL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2); Has 797 Blast hits to 787 proteins in 122 species: Archae - 0; Bacteria - 2; Metazoa - 159; Fungi - 55; Plants - 510; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). protein_id AT1G17460.1p transcript_id AT1G17460.1 protein_id AT1G17460.1p transcript_id AT1G17460.1
AT1G17460	chr1:005999519	0.0	W/5999519-5999638,5999777-5999951,6000287-6000345,6000532-6001320,6001534-6001668,6001909-6002184,6002266-6002310,6002394-6002546	AT1G17460.3 AT1G17460.3 CDS TRF-like 3
At1g17470	chr1:006003442	0.0	W/6003442-6003511,6003747-6003814,6004121-6004197,6004329-6004509,6004634-6004690,6004786-6004860,6005014-6005133,6005262-6005432,6005577-6005690,6005776-6005946,6006060-6006155	AT1G17470.1 CDS developmentally regulated G-protein 1 [TAIR10] CDS gene_syn ATDRG, ATDRG1, DRG1, F28G4.4, developmentally regulated G-protein 1 gene DRG1 function Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues. Has GTPase activity. go_component cytoplasmic membrane-bounded vesicle|GO:0016023|10380799|IDA go_function GTPase activity|GO:0003924|10380799|ISS go_function GTPase activity|GO:0003924|19460440|IDA go_function GTP binding|GO:0005525|19460440|IDA go_function GTP binding|GO:0005525||ISS go_function GDP binding|GO:0019003|19460440|IDA product developmentally regulated G-protein 1 note developmentally regulated G-protein 1 (DRG1); CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G72660.3); Has 20324 Blast hits to 20306 proteins in 2951 species: Archae - 770; Bacteria - 13313; Metazoa - 856; Fungi - 587; Plants - 375; Viruses - 0; Other Eukaryotes - 4423 (source: NCBI BLink). protein_id AT1G17470.1p transcript_id AT1G17470.1 protein_id AT1G17470.1p transcript_id AT1G17470.1
At1g17470	chr1:006003442	0.0	W/6003442-6003511,6003747-6003814,6004121-6004197,6004329-6004509,6004634-6004690,6004786-6004860,6005014-6005133,6005262-6005432,6005577-6005690,6005776-6005946,6006060-6006155	AT1G17470.2 CDS developmentally regulated G-protein 1 [TAIR10] CDS gene_syn ATDRG, ATDRG1, DRG1, F28G4.4, developmentally regulated G-protein 1 gene DRG1 function Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues. Has GTPase activity. go_component cytoplasmic membrane-bounded vesicle|GO:0016023|10380799|IDA go_function GTPase activity|GO:0003924|10380799|ISS go_function GTPase activity|GO:0003924|19460440|IDA go_function GTP binding|GO:0005525|19460440|IDA go_function GTP binding|GO:0005525||ISS go_function GDP binding|GO:0019003|19460440|IDA product developmentally regulated G-protein 1 note developmentally regulated G-protein 1 (DRG1); CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G72660.3); Has 20324 Blast hits to 20306 proteins in 2951 species: Archae - 770; Bacteria - 13313; Metazoa - 856; Fungi - 587; Plants - 375; Viruses - 0; Other Eukaryotes - 4423 (source: NCBI BLink). protein_id AT1G17470.2p transcript_id AT1G17470.2 protein_id AT1G17470.2p transcript_id AT1G17470.2
At1g17480	chr1:006006675	0.0	C/6006675-6007157,6007237-6007350,6007426-6007620,6007735-6007995,6008070-6008132	AT1G17480.1 CDS IQ-domain 7 [TAIR10] CDS gene_syn F28G4.3, F28G4_3, IQ-domain 7, IQD7 gene IQD7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function calmodulin binding|GO:0005516||ISS product IQ-domain 7 note IQ-domain 7 (IQD7); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 8 (TAIR:AT1G72670.1); Has 807 Blast hits to 806 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 5; Plants - 778; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G17480.1p transcript_id AT1G17480.1 protein_id AT1G17480.1p transcript_id AT1G17480.1
At1g17490	chr1:006008669	0.0	W/6008669-6008699,6008963-6009165	AT1G17490.1 CDS epidermal patterning factor-like protein, putative [TAIR10] CDS gene_syn F28G4.23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 57 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17490.1p transcript_id AT1G17490.1 protein_id AT1G17490.1p transcript_id AT1G17490.1
At1g17495	chr1:006009570	0.0	C/6009570-6013742	AT1G17495.1 [TAIR10] mRNA
At1g17495	chr1:006009570	0.0	C/6009570-6013742	AT1G17495 [TAIR10] TE pseudo gene_syn F28G4.2 note Transposable element gene, copia-like retrotransposon family, has a 4.7e-213 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
At1g17500	chr1:006018757	0.0	W/6018757-6020531,6020616-6020726,6020819-6021095,6021181-6021269,6021350-6021434,6021524-6021733,6021829-6021954,6022064-6022162,6022257-6022448,6022515-6023201	AT1G17500.1 CDS ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [TAIR10] CDS gene_syn F1L3.21, F1L3_21 go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process ATP biosynthetic process|GO:0006754||IEA go_process metabolic process|GO:0008152||IEA go_process phospholipid transport|GO:0015914||IEA go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS product ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein note ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G72700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G17500.1p transcript_id AT1G17500.1 protein_id AT1G17500.1p transcript_id AT1G17500.1
AT1G17500	chr1:006018757	0.0	W/6018757-6020531,6020616-6020726,6020819-6021095,6021181-6021269,6021350-6021434,6021524-6021733,6021829-6021954,6022064-6022162,6022257-6022448,6022515-6023201	AT1G17500.2 AT1G17500.2 CDS ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
At1g17510	chr1:006023704	0.0	C/6023704-6023865,6024005-6024211	AT1G17510.1 CDS hypothetical protein [TAIR10] CDS gene_syn F1L3.22, F1L3_22 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17510.1p transcript_id AT1G17510.1 protein_id AT1G17510.1p transcript_id AT1G17510.1
At1g17520	chr1:006024959	0.0	C/6024959-6024990,6025093-6025378,6025505-6025606,6026078-6026162,6026293-6026528,6027075-6027224	AT1G17520.1 CDS Homeodomain-like/winged-helix DNA-binding family protein [TAIR10] CDS gene_syn F1L3.23, F1L3_23 go_component nucleosome|GO:0000786||IEA go_component nucleus|GO:0005634||IEA go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process response to cadmium ion|GO:0046686|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Homeodomain-like/winged-helix DNA-binding family protein note Homeodomain-like/winged-helix DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G72740.1); Has 882 Blast hits to 875 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 89; Plants - 618; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). protein_id AT1G17520.1p transcript_id AT1G17520.1 protein_id AT1G17520.1p transcript_id AT1G17520.1
AT1G17520	chr1:006024959	0.0	C/6024959-6024990,6025093-6025378,6025505-6025609,6026078-6026162,6026293-6026528,6027075-6027224	AT1G17520.2 AT1G17520.2 CDS Homeodomain-like/winged-helix DNA-binding family protein
AT1G17520	chr1:006024959	0.0	C/6024959-6024990,6025093-6025378,6025523-6025606,6026078-6026162,6026293-6026528,6027075-6027224	AT1G17520.4 AT1G17520.4 CDS Homeodomain-like/winged-helix DNA-binding family protein
AT1G17520	chr1:006024959	0.0	C/6024959-6024990,6025093-6025378,6025523-6025609,6026078-6026162,6026293-6026528,6027075-6027224	AT1G17520.3 AT1G17520.3 CDS Homeodomain-like/winged-helix DNA-binding family protein
AT1G17530	chr1:006027723	0.0	W/6027723-6028270,6028907-6028910	AT1G17530.2 AT1G17530.2 CDS translocase of inner mitochondrial membrane 23
At1g17530	chr1:006027723	0.0	W/6027723-6028286	AT1G17530.1 CDS translocase of inner mitochondrial membrane 23 [TAIR10] CDS gene_syn ATTIM23-1, F11A6.23, TIM23-1, translocase of inner mitochondrial membrane 23 gene TIM23-1 function Encodes a translocase of inner mitochondrial membrane. go_component mitochondrial inner membrane|GO:0005743|12692332|IDA go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS go_process protein targeting to mitochondrion|GO:0006626|12692332|TAS go_process protein transport|GO:0015031||ISS go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|12692332|TAS go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS product translocase of inner mitochondrial membrane 23 note translocase of inner mitochondrial membrane 23 (TIM23-1); CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim23 (InterPro:IPR005681), Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: translocase inner membrane subunit 23-2 (TAIR:AT1G72750.1); Has 791 Blast hits to 791 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 393; Fungi - 198; Plants - 139; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). protein_id AT1G17530.1p transcript_id AT1G17530.1 protein_id AT1G17530.1p transcript_id AT1G17530.1
At1g17540	chr1:006029551	0.0	C/6029551-6029607,6029714-6030123,6030212-6030575,6030654-6031061,6031159-6031236,6031341-6031397,6031479-6031662,6031753-6032004,6032094-6032215,6032315-6032412,6032485-6032641	AT1G17540.1 CDS Protein kinase protein with adenine nucleotide alpha hydrolases-like domain [TAIR10] CDS gene_syn F1L3.25, F1L3_25 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process response to stress|GO:0006950||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product Protein kinase protein with adenine nucleotide alpha hydrolases-like domain note Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G72760.1); Has 111948 Blast hits to 110754 proteins in 4644 species: Archae - 110; Bacteria - 12962; Metazoa - 41520; Fungi - 9180; Plants - 32064; Viruses - 278; Other Eukaryotes - 15834 (source: NCBI BLink). protein_id AT1G17540.1p transcript_id AT1G17540.1 protein_id AT1G17540.1p transcript_id AT1G17540.1
At1g17545	chr1:006033109	0.0	W/6033109-6033124,6033307-6033509,6033588-6033908	AT1G17545.1 CDS Protein phosphatase 2C family protein [TAIR10] CDS gene_syn F1L3.26, F1L3_26 go_function catalytic activity|GO:0003824||IEA go_process biological_process|GO:0008150||ND product Protein phosphatase 2C family protein note Protein phosphatase 2C family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: homology to ABI1 (TAIR:AT1G72770.2); Has 482 Blast hits to 481 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 471; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G17545.1p transcript_id AT1G17545.1 protein_id AT1G17545.1p transcript_id AT1G17545.1
At1g17550	chr1:006034917	0.0	W/6034917-6035660,6035859-6036209,6036305-6036410,6036605-6036939	AT1G17550.1 CDS homology to ABI2 [TAIR10] CDS gene_syn F1L3.38, HAB2, homology to ABI2 gene HAB2 function Protein Phosphatase 2C go_component protein serine/threonine phosphatase complex|GO:0008287||IEA go_process protein amino acid dephosphorylation|GO:0006470||IEA go_function catalytic activity|GO:0003824||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||IEA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product homology to ABI2 note homology to ABI2 (HAB2); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: homology to ABI1 (TAIR:AT1G72770.3); Has 6552 Blast hits to 6537 proteins in 424 species: Archae - 4; Bacteria - 229; Metazoa - 1602; Fungi - 744; Plants - 2705; Viruses - 7; Other Eukaryotes - 1261 (source: NCBI BLink). protein_id AT1G17550.1p transcript_id AT1G17550.1 protein_id AT1G17550.1p transcript_id AT1G17550.1
AT1G17550	chr1:006034917	0.0	W/6034917-6035660,6035859-6036209,6036305-6036410,6036605-6036939	AT1G17550.2 AT1G17550.2 CDS homology to ABI2
At1g17560	chr1:006037635	0.0	C/6037635-6038099,6038205-6038296,6038541-6038574	AT1G17560.1 CDS Ribosomal protein L14p/L23e family protein [TAIR10] CDS gene_syn F1L3.27, F1L3_27, HLL, HUELLENLOS gene HLL function Mutant shows abnormal ovule development go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_component large ribosomal subunit|GO:0015934||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L14p/L23e family protein note HUELLENLOS (HLL); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14, bacterial-type (InterPro:IPR005745), Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT5G46160.2); Has 9401 Blast hits to 9401 proteins in 3194 species: Archae - 306; Bacteria - 5487; Metazoa - 280; Fungi - 278; Plants - 760; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink). protein_id AT1G17560.1p transcript_id AT1G17560.1 protein_id AT1G17560.1p transcript_id AT1G17560.1
AT1G17560	chr1:006037635	0.0	C/6037635-6038156	AT1G17560.2 AT1G17560.2 CDS Ribosomal protein L14p/L23e family protein
At1g17570	chr1:006038757	0.0	W/6038757-6038838	AT1G17570.1 [TAIR10] tRNA gene_syn 52177.TRNA-SER-1, 60124.TRNA-SER-1, AT1G17575 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ser (anticodon: AGA) transcript_id AT1G17570.1
At1g17580	chr1:006039453	0.0	W/6039453-6039455,6039835-6039960,6040579-6040716,6040824-6040969,6041059-6041215,6041305-6041363,6041569-6041728,6041834-6041983,6042071-6042207,6042317-6042463,6042555-6042656,6042966-6043023,6043112-6043213,6043373-6043410,6043493-6043619,6043708-6043878,6043957-6044088,6044298-6044407,6044505-6044565,6044778-6044955,6045145-6045350,6045464-6045583,6045681-6045779,6045899-6046117,6046319-6046458,6046673-6046790,6046874-6046924,6047006-6047056,6047170-6047340,6047424-6047579,6047663-6047872,6047984-6048130,6048234-6048304,6048387-6048486,6048565-6048678,6048757-6048837,6049003-6049085,6049186-6049309	AT1G17580.1 CDS myosin 1 [TAIR10] CDS gene_syn ARABIDOPSIS MYOSIN 1, ATMYA1, F1L3.28, F1L3_28, MYA1, MYOSIN XI 1, XI-1, myosin 1 gene MYA1 function Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development. go_component myosin complex|GO:0016459||IEA go_component myosin complex|GO:0016459||ISS go_process post-embryonic development|GO:0009791|19060218|IGI go_process fruit development|GO:0010154|19060218|IGI go_process cell growth|GO:0016049|19060218|IGI go_process actin filament-based movement|GO:0030048|11516337|TAS go_process cell division|GO:0051301|19060218|IGI go_process Golgi localization|GO:0051645|19060218|IMP go_process mitochondrion localization|GO:0051646|19060218|IGI go_process peroxisome localization|GO:0060151|19060218|IGI go_function motor activity|GO:0003774|11516337|ISS go_function motor activity|GO:0003774||ISS product myosin 1 note myosin 1 (MYA1); FUNCTIONS IN: motor activity; INVOLVED IN: in 8 processes; LOCATED IN: myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1); Has 18995 Blast hits to 13821 proteins in 1312 species: Archae - 114; Bacteria - 980; Metazoa - 11844; Fungi - 1348; Plants - 1046; Viruses - 13; Other Eukaryotes - 3650 (source: NCBI BLink). protein_id AT1G17580.1p transcript_id AT1G17580.1 protein_id AT1G17580.1p transcript_id AT1G17580.1
At1g17590	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.1 CDS nuclear factor Y, subunit A8 [TAIR10] CDS gene_syn nuclear factor Y, subunit A8, F1L3.29, F1L3_29, NF-YA8 gene NF-YA8 go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_component CCAAT-binding factor complex|GO:0016602||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component CCAAT-binding factor complex|GO:0016602||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product nuclear factor Y, subunit A8 note nuclear factor Y, subunit A8 (NF-YA8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A3 (TAIR:AT1G72830.1); Has 686 Blast hits to 686 proteins in 162 species: Archae - 0; Bacteria - 2; Metazoa - 143; Fungi - 132; Plants - 381; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). protein_id AT1G17590.1p transcript_id AT1G17590.1 protein_id AT1G17590.1p transcript_id AT1G17590.1
At1g17590	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.2 CDS nuclear factor Y, subunit A8 [TAIR10] CDS gene_syn nuclear factor Y, subunit A8, F1L3.29, F1L3_29, NF-YA8 gene NF-YA8 go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_component CCAAT-binding factor complex|GO:0016602||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component CCAAT-binding factor complex|GO:0016602||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product nuclear factor Y, subunit A8 note nuclear factor Y, subunit A8 (NF-YA8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A3 (TAIR:AT1G72830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G17590.2p transcript_id AT1G17590.2 protein_id AT1G17590.2p transcript_id AT1G17590.2
At1g17590	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.3 CDS nuclear factor Y, subunit A8 [TAIR10] CDS gene_syn nuclear factor Y, subunit A8, F1L3.29, F1L3_29, NF-YA8 gene NF-YA8 go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_component CCAAT-binding factor complex|GO:0016602||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component CCAAT-binding factor complex|GO:0016602||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product nuclear factor Y, subunit A8 note nuclear factor Y, subunit A8 (NF-YA8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A3 (TAIR:AT1G72830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G17590.3p transcript_id AT1G17590.3 protein_id AT1G17590.3p transcript_id AT1G17590.3
At1g17590	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.4 CDS nuclear factor Y, subunit A8 [TAIR10] CDS gene_syn nuclear factor Y, subunit A8, F1L3.29, F1L3_29, NF-YA8 gene NF-YA8 go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_component CCAAT-binding factor complex|GO:0016602||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component CCAAT-binding factor complex|GO:0016602||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product nuclear factor Y, subunit A8 note nuclear factor Y, subunit A8 (NF-YA8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A3 (TAIR:AT1G72830.1). protein_id AT1G17590.4p transcript_id AT1G17590.4 protein_id AT1G17590.4p transcript_id AT1G17590.4
At1g17600	chr1:006053026	0.0	C/6053026-6053214,6053289-6054380,6054505-6054807,6054908-6056009,6056109-6056572	AT1G17600.1 CDS Disease resistance protein (TIR-NBS-LRR class) family [TAIR10] CDS gene_syn F1L3.30, F1L3_30 go_component intrinsic to membrane|GO:0031224||IEA go_process apoptosis|GO:0006915||IEA go_process defense response|GO:0006952||IEA go_process signal transduction|GO:0007165||IEA go_process innate immune response|GO:0045087||IEA go_function transmembrane receptor activity|GO:0004888||IEA go_function ATP binding|GO:0005524||IEA go_process defense response|GO:0006952||ISS product Disease resistance protein (TIR-NBS-LRR class) family note Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: leaf whorl, leaf; EXPRESSED DURING: LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G40100.1); Has 24331 Blast hits to 16604 proteins in 714 species: Archae - 19; Bacteria - 1452; Metazoa - 3934; Fungi - 232; Plants - 17994; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink). protein_id AT1G17600.1p transcript_id AT1G17600.1 protein_id AT1G17600.1p transcript_id AT1G17600.1
At1g17610	chr1:006056895	0.0	W/6056895-6058157	AT1G17610.1 CDS Disease resistance protein (TIR-NBS class) [TAIR10] CDS gene_syn F11A6.20, F11A6_20 go_component endomembrane system|GO:0012505||IEA go_component intrinsic to membrane|GO:0031224||IEA go_process apoptosis|GO:0006915||IEA go_process defense response|GO:0006952||IEA go_process signal transduction|GO:0007165||IEA go_process innate immune response|GO:0045087||IEA go_function transmembrane receptor activity|GO:0004888||IEA go_function ATP binding|GO:0005524||IEA product Disease resistance protein (TIR-NBS class) note Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT5G40090.1); Has 6872 Blast hits to 6811 proteins in 238 species: Archae - 0; Bacteria - 42; Metazoa - 2; Fungi - 5; Plants - 6813; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G17610.1p transcript_id AT1G17610.1 protein_id AT1G17610.1p transcript_id AT1G17610.1
AT1G17610	chr1:006056895	0.0	W/6056895-6058157	AT1G17610.2 AT1G17610.2 CDS Disease resistance protein (TIR-NBS class)
At1g17615	chr1:006059441	0.0	W/6059441-6059919,6060004-6060667	AT1G17615.1 CDS Disease resistance protein (TIR-NBS class) [TAIR10] CDS gene_syn F1L3.31, F1L3_31 go_component intrinsic to membrane|GO:0031224||IEA go_process apoptosis|GO:0006915||IEA go_process signal transduction|GO:0007165||IEA go_process innate immune response|GO:0045087||IEA go_function transmembrane receptor activity|GO:0004888||IEA go_function ATP binding|GO:0005524||IEA go_process defense response|GO:0006952||ISS product Disease resistance protein (TIR-NBS class) note Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72950.1); Has 4595 Blast hits to 4465 proteins in 213 species: Archae - 2; Bacteria - 136; Metazoa - 33; Fungi - 0; Plants - 4419; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G17615.1p transcript_id AT1G17615.1 protein_id AT1G17615.1p transcript_id AT1G17615.1
At1g17620	chr1:006062313	0.0	W/6062313-6063107	AT1G17620.1 CDS Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [TAIR10] CDS gene_syn F11A6.25 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family note Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11890.1); Has 824 Blast hits to 823 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 824; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17620.1p transcript_id AT1G17620.1 protein_id AT1G17620.1p transcript_id AT1G17620.1
At1g17630	chr1:006064525	0.0	W/6064525-6066720	AT1G17630.1 CDS Pentatricopeptide repeat (PPR-like) superfamily protein [TAIR10] CDS gene_syn F11A6.24 go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR-like) superfamily protein note Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1); Has 40851 Blast hits to 13793 proteins in 242 species: Archae - 0; Bacteria - 7; Metazoa - 93; Fungi - 89; Plants - 40145; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink). protein_id AT1G17630.1p transcript_id AT1G17630.1 protein_id AT1G17630.1p transcript_id AT1G17630.1
AT1G17630	chr1:006064525	0.0	W/6064525-6066720	AT1G17630.2 AT1G17630.2 CDS Pentatricopeptide repeat (PPR-like) superfamily protein
At1g17640	chr1:006067394	0.0	C/6067394-6067822,6067906-6068075,6068152-6068260,6068355-6068518,6068730-6068770,6068902-6069098	AT1G17640.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F11A6.17 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2); Has 513802 Blast hits to 488537 proteins in 21806 species: Archae - 10521; Bacteria - 302893; Metazoa - 102492; Fungi - 14718; Plants - 34458; Viruses - 34904; Other Eukaryotes - 13816 (source: NCBI BLink). protein_id AT1G17640.1p transcript_id AT1G17640.1 protein_id AT1G17640.1p transcript_id AT1G17640.1
AT1G17640	chr1:006067394	0.0	C/6067394-6067822,6067906-6068075,6068152-6068260,6068355-6068518,6068730-6068770,6068902-6069098	AT1G17640.2 AT1G17640.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
AT1G17640	chr1:006067394	0.0	C/6067394-6067822,6067906-6068075,6068152-6068260,6068355-6068518,6068730-6068770,6068902-6069098	AT1G17640.3 AT1G17640.3 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g17650	chr1:006069594	0.0	C/6069594-6069758,6069849-6069953,6070030-6070102,6070185-6070255,6070344-6070396,6070559-6070619,6070713-6070797,6070985-6071040,6071128-6071203,6071317-6071382,6071500-6071581,6071781-6071964	AT1G17650.1 CDS glyoxylate reductase 2 [TAIR10] CDS gene_syn F11A6.12, GLYOXYLATE REDUCTASE 2, GLYR2, GR2, glyoxylate reductase 2 gene GLYR2 function Glyoxylate reductase located in chloroplasts. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_process pentose-phosphate shunt|GO:0006098||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_component chloroplast|GO:0009507|18495639|IDA go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS go_function glyoxylate reductase (NADP) activity|GO:0030267|18495639|IDA product glyoxylate reductase 2 note glyoxylate reductase 2 (GLYR2); FUNCTIONS IN: phosphogluconate dehydrogenase (decarboxylating) activity, glyoxylate reductase (NADP) activity; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: glyoxylate reductase 1 (TAIR:AT3G25530.1); Has 16115 Blast hits to 16085 proteins in 2099 species: Archae - 147; Bacteria - 9815; Metazoa - 317; Fungi - 434; Plants - 311; Viruses - 1; Other Eukaryotes - 5090 (source: NCBI BLink). protein_id AT1G17650.1p transcript_id AT1G17650.1 protein_id AT1G17650.1p transcript_id AT1G17650.1
AT1G17650	chr1:006069594	0.0	C/6069594-6069758,6069849-6069953,6070030-6070102,6070185-6070255,6070344-6070396,6070559-6070619,6070713-6070797,6070985-6071040,6071128-6071203,6071317-6071382,6071500-6071588	AT1G17650.2 AT1G17650.2 CDS glyoxylate reductase 2
At1g17665	chr1:006072432	0.0	C/6072432-6072468,6072635-6072762,6073003-6073101,6073181-6073268,6073470-6073522,6073873-6074484	AT1G17665.1 CDS CA-responsive protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to 146 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). protein_id AT1G17665.1p transcript_id AT1G17665.1 protein_id AT1G17665.1p transcript_id AT1G17665.1
At1g17660	chr1:006075820	0.0	W/6075820-6075891	AT1G17660.1 [TAIR10] tRNA gene_syn 60124.TRNA-ASP-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Asp (anticodon: GTC) transcript_id AT1G17660.1
At1g17670	chr1:006075945	0.0	C/6075945-6076018	AT1G17670.1 [TAIR10] tRNA gene_syn 60124.TRNA-VAL-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Val (anticodon: AAC) transcript_id AT1G17670.1
At1g17680	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.1 CDS tetratricopeptide repeat (TPR)-containing protein [TAIR10] CDS gene_syn F11A6.2, F11A6_2 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product tetratricopeptide repeat (TPR)-containing protein note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 5585 Blast hits to 3297 proteins in 567 species: Archae - 80; Bacteria - 1266; Metazoa - 1500; Fungi - 759; Plants - 424; Viruses - 52; Other Eukaryotes - 1504 (source: NCBI BLink). protein_id AT1G17680.1p transcript_id AT1G17680.1 protein_id AT1G17680.1p transcript_id AT1G17680.1
At1g17680	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.2 CDS tetratricopeptide repeat (TPR)-containing protein [TAIR10] CDS gene_syn F11A6.2, F11A6_2 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product tetratricopeptide repeat (TPR)-containing protein note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 5584 Blast hits to 3296 proteins in 567 species: Archae - 79; Bacteria - 1266; Metazoa - 1500; Fungi - 759; Plants - 424; Viruses - 52; Other Eukaryotes - 1504 (source: NCBI BLink). protein_id AT1G17680.2p transcript_id AT1G17680.2 protein_id AT1G17680.2p transcript_id AT1G17680.2
AT1G17680	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.3 AT1G17680.3 CDS tetratricopeptide repeat (TPR)-containing protein
At1g17690	chr1:006082878	0.0	C/6082878-6082952,6083121-6083195,6083286-6083348,6083450-6083555,6083650-6083744,6083910-6083939,6084122-6084193,6084261-6084320,6084527-6084573,6084705-6084769,6084867-6084955,6085038-6085076,6085280-6085339,6085427-6085499,6085602-6085798,6086005-6086085,6086188-6086319,6086421-6086521,6086628-6086751,6086849-6086993,6087094-6087253,6087418-6087542,6087801-6087930,6088037-6088157	AT1G17690.1 CDS U3 small nucleolar RNA-associated protein [TAIR10] CDS gene_syn F11A6.3, F11A6_3, NOF1, nucleolar factor 1 gene NOF1 go_component nucleus|GO:0005634||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). protein_id AT1G17690.1p transcript_id AT1G17690.1 protein_id AT1G17690.1p transcript_id AT1G17690.1
At1g17700	chr1:006089588	0.0	W/6089588-6090130	AT1G17700.1 CDS prenylated RAB acceptor 1.F1 [TAIR10] CDS gene_syn F11A6.4, F11A6_4, PRA1.F1, prenylated RAB acceptor 1.F1 gene PRA1.F1 go_component endoplasmic reticulum|GO:0005783|18583532|IDA go_process vesicle-mediated transport|GO:0016192|18583532|IDA go_function molecular_function|GO:0003674||ND product prenylated RAB acceptor 1.F1 note prenylated RAB acceptor 1.F1 (PRA1.F1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1); Has 501 Blast hits to 501 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 27; Plants - 322; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). protein_id AT1G17700.1p transcript_id AT1G17700.1 protein_id AT1G17700.1p transcript_id AT1G17700.1
At1g17710	chr1:006090763	0.0	C/6090763-6091131,6091309-6091510,6091583-6091704,6091829-6091975	AT1G17710.1 CDS Pyridoxal phosphate phosphatase-related protein [TAIR10] CDS gene_syn F11A6.5, F11A6_5 go_process metabolic process|GO:0008152||IEA go_function phosphatase activity|GO:0016791||IEA product Pyridoxal phosphate phosphatase-related protein note Pyridoxal phosphate phosphatase-related protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase, PHOSPHO2 (InterPro:IPR016965), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383), Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 2 (TAIR:AT1G73010.1); Has 360 Blast hits to 348 proteins in 105 species: Archae - 0; Bacteria - 18; Metazoa - 175; Fungi - 16; Plants - 106; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). protein_id AT1G17710.1p transcript_id AT1G17710.1 protein_id AT1G17710.1p transcript_id AT1G17710.1
At1g17710	chr1:006090763	0.0	C/6090763-6091131,6091309-6091510,6091583-6091755	AT1G17710.2 CDS Pyridoxal phosphate phosphatase-related protein [TAIR10] CDS gene_syn F11A6.5, F11A6_5 go_function phosphatase activity|GO:0016791||IEA product Pyridoxal phosphate phosphatase-related protein note Pyridoxal phosphate phosphatase-related protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 2 (TAIR:AT1G73010.1); Has 346 Blast hits to 336 proteins in 99 species: Archae - 0; Bacteria - 6; Metazoa - 176; Fungi - 16; Plants - 103; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). protein_id AT1G17710.2p transcript_id AT1G17710.2 protein_id AT1G17710.2p transcript_id AT1G17710.2
At1g17720	chr1:006093949	0.0	C/6093949-6094085,6094168-6094235,6094338-6094415,6094514-6094605,6094687-6094755,6094862-6094985,6095172-6095295,6095444-6095562,6095832-6095923,6096213-6096389,6096641-6096760,6096848-6096943,6097026-6097129,6097960-6098065	AT1G17720.1 CDS Protein phosphatase 2A, regulatory subunit PR55 [TAIR10] CDS gene_syn ATB BETA, F11A6.6, F11A6_6 gene ATB BETA function type 2A protein serine/threonine phosphatase 55 kDa B go_component protein phosphatase type 2A complex|GO:0000159|8756607|ISS go_process protein amino acid dephosphorylation|GO:0006470|8756607|ISS go_function nucleotide binding|GO:0000166||ISS go_function protein phosphatase type 2A regulator activity|GO:0008601|8756607|ISS product Protein phosphatase 2A, regulatory subunit PR55 note ATB BETA; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (TAIR:AT1G51690.1); Has 1080 Blast hits to 1028 proteins in 280 species: Archae - 0; Bacteria - 91; Metazoa - 514; Fungi - 212; Plants - 124; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink). protein_id AT1G17720.1p transcript_id AT1G17720.1 protein_id AT1G17720.1p transcript_id AT1G17720.1
At1g17720	chr1:006093949	0.0	C/6093949-6094085,6094168-6094235,6094338-6094415,6094514-6094605,6094687-6094755,6094862-6094985,6095172-6095295,6095444-6095562,6095832-6095923,6096216-6096389,6096641-6096760,6096848-6096943,6097026-6097129,6097960-6098065	AT1G17720.2 CDS Protein phosphatase 2A, regulatory subunit PR55 [TAIR10] CDS gene_syn ATB BETA, F11A6.6, F11A6_6 gene ATB BETA function type 2A protein serine/threonine phosphatase 55 kDa B go_component protein phosphatase type 2A complex|GO:0000159|8756607|ISS go_process protein amino acid dephosphorylation|GO:0006470|8756607|ISS go_function nucleotide binding|GO:0000166||ISS go_function protein phosphatase type 2A regulator activity|GO:0008601|8756607|ISS product Protein phosphatase 2A, regulatory subunit PR55 note ATB BETA; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (TAIR:AT1G51690.3); Has 1042 Blast hits to 998 proteins in 278 species: Archae - 0; Bacteria - 71; Metazoa - 509; Fungi - 214; Plants - 122; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). protein_id AT1G17720.2p transcript_id AT1G17720.2 protein_id AT1G17720.2p transcript_id AT1G17720.2
At1g17730	chr1:006099210	0.0	W/6099210-6099534,6099867-6100153	AT1G17730.1 CDS vacuolar protein sorting 46.1 [TAIR10] CDS gene_syn CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B, CHMP1B, F11A6.7, F11A6_7, VPS46.1, vacuolar protein sorting 46.1 gene VPS46.1 function Encodes an ESCRT-related protein: CHMP1A/AT1G73030; CHMP1B/AT1G17730. CHMP1A and B mediate multivesicular body sorting of auxin carriers and are required for plant development. ESCRT: Endosomal Sorting Complexes Required For Transport machinery; CHMP: Charged Multivesicular Body Protein/Chromatin Modifying Protein. go_component cellular_component|GO:0005575||ND go_process embryonic axis specification|GO:0000578|19304934|IGI go_process embryo development|GO:0009790|19304934|IGI go_process vesicle-mediated transport|GO:0016192|16488176|ISS go_process endosome transport via multivesicular body sorting pathway|GO:0032509|19304934|IGI go_process growth|GO:0040007|19304934|IGI product vacuolar protein sorting 46.1 note vacuolar protein sorting 46.1 (VPS46.1); CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT1G73030.1); Has 1319 Blast hits to 1319 proteins in 225 species: Archae - 2; Bacteria - 0; Metazoa - 503; Fungi - 283; Plants - 343; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink). protein_id AT1G17730.1p transcript_id AT1G17730.1 protein_id AT1G17730.1p transcript_id AT1G17730.1
At1g17745	chr1:006101157	0.0	W/6101157-6101775,6103633-6104120,6104212-6104979	AT1G17745.1 CDS D-3-phosphoglycerate dehydrogenase [TAIR10] CDS gene_syn 3-phosphoglycerate dehydrogenase, PGDH function encodes a 3-Phosphoglycerate dehydrogenase go_component chloroplast|GO:0009507|18431481|IDA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component chloroplast|GO:0009507|9867856|IDA go_process L-serine biosynthetic process|GO:0006564|9867856|TAS go_function phosphoglycerate dehydrogenase activity|GO:0004617|9867856|IGI go_function protein binding|GO:0005515|19452453|IPI product D-3-phosphoglycerate dehydrogenase note 3-phosphoglycerate dehydrogenase (PGDH); FUNCTIONS IN: phosphoglycerate dehydrogenase activity, protein binding; INVOLVED IN: L-serine biosynthetic process; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT4G34200.1); Has 30450 Blast hits to 30444 proteins in 2726 species: Archae - 473; Bacteria - 18179; Metazoa - 739; Fungi - 1175; Plants - 595; Viruses - 5; Other Eukaryotes - 9284 (source: NCBI BLink). protein_id AT1G17745.1p transcript_id AT1G17745.1 protein_id AT1G17745.1p transcript_id AT1G17745.1
At1g17745	chr1:006101157	0.0	W/6101157-6101779,6103331-6103418,6103644-6104120,6104212-6104979	AT1G17745.2 CDS D-3-phosphoglycerate dehydrogenase [TAIR10] CDS gene_syn 3-phosphoglycerate dehydrogenase, PGDH function encodes a 3-Phosphoglycerate dehydrogenase go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component chloroplast|GO:0009507|9867856|IDA go_process L-serine biosynthetic process|GO:0006564|9867856|TAS go_function phosphoglycerate dehydrogenase activity|GO:0004617|9867856|IGI go_function protein binding|GO:0005515|19452453|IPI product D-3-phosphoglycerate dehydrogenase note D-3-phosphoglycerate dehydrogenase; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), NAD(P)-binding domain (InterPro:IPR016040), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT4G34200.1). protein_id AT1G17745.2p transcript_id AT1G17745.2 protein_id AT1G17745.2p transcript_id AT1G17745.2
At1g17744	chr1:006101355	0.0	C/6101355-6101795	AT1G17744.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G17744.1p transcript_id AT1G17744.1 protein_id AT1G17744.1p transcript_id AT1G17744.1
At1g17750	chr1:006106656	0.0	W/6106656-6109551,6109638-6110008	AT1G17750.1 CDS PEP1 receptor 2 [TAIR10] CDS gene_syn AtPEPR2, F11A6.9, F11A6_9, PEP1 RECEPTOR 2, PEP1 receptor 2, PEPR2 gene PEPR2 function Encodes PEPR2, a plasma membrane leucine-rich repeat receptor kinase functioning as a receptor for the Pep1 and Pep2 peptides. Pep1 and Pep2 are amino acids that induce the transcription of defense-related genes. go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_process response to wounding|GO:0009611|20179141|IEP go_process response to jasmonic acid stimulus|GO:0009753|20179141|IEP go_process defense response to bacterium|GO:0042742|20179141|IMP go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS go_function peptide binding|GO:0042277|20179141|IDA product PEP1 receptor 2 note PEP1 receptor 2 (PEPR2); FUNCTIONS IN: protein serine/threonine kinase activity, peptide binding, kinase activity, ATP binding; INVOLVED IN: response to jasmonic acid stimulus, protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, defense response to bacterium, response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PEP1 receptor 1 (TAIR:AT1G73080.1); Has 253253 Blast hits to 143216 proteins in 4736 species: Archae - 167; Bacteria - 25668; Metazoa - 79287; Fungi - 11782; Plants - 106533; Viruses - 446; Other Eukaryotes - 29370 (source: NCBI BLink). protein_id AT1G17750.1p transcript_id AT1G17750.1 protein_id AT1G17750.1p transcript_id AT1G17750.1
At1g17760	chr1:006110208	0.0	C/6110208-6110380,6110555-6110746,6110846-6111010,6111099-6111176,6111264-6111330,6111426-6111578,6111969-6112028,6112421-6112517,6112697-6112761,6113168-6113308,6113451-6113513,6113600-6113658,6113856-6113976,6114079-6114142,6114514-6114560,6114791-6114919,6115035-6115175,6115253-6115314,6115616-6115716,6115856-6115965,6116051-6116113,6116218-6116271	AT1G17760.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, ATCSTF77, CSTF77, F11A6.10, F11A6_10 gene CSTF77 function Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit. RNA 3&#8242;-end processing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC. go_component intracellular|GO:0005622||IEA go_component nucleus|GO:0005634||IEA go_process mRNA processing|GO:0006397||ISS go_process embryo sac development|GO:0009553|19965720|IMP go_process RNA 3'-end processing|GO:0031123|19965720|IMP go_function mRNA binding|GO:0003729|12379796|IDA go_function protein binding|GO:0005515|16282318|IPI go_function transcription repressor activity|GO:0016564|19965720|IMP product Tetratricopeptide repeat (TPR)-like superfamily protein note CSTF77; FUNCTIONS IN: protein binding, mRNA binding, transcription repressor activity; INVOLVED IN: RNA 3'-end processing, mRNA processing, embryo sac development; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 2092 Blast hits to 1537 proteins in 234 species: Archae - 0; Bacteria - 14; Metazoa - 771; Fungi - 713; Plants - 343; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink). protein_id AT1G17760.1p transcript_id AT1G17760.1 protein_id AT1G17760.1p transcript_id AT1G17760.1
At1g17770	chr1:006120741	0.0	W/6120741-6122822	AT1G17770.1 CDS SU(VAR)3-9 homolog 7 [TAIR10] CDS gene_syn F2H15.1, F2H15_1, SDG17, SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7, SUVH7 gene SUVH7 function Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. go_component nucleus|GO:0005634||IEA go_process chromatin modification|GO:0016568||IEA go_function zinc ion binding|GO:0008270||IEA go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA product SU(VAR)3-9 homolog 7 note SU(VAR)3-9 homolog 7 (SUVH7); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Post-SET domain (InterPro:IPR003616), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SET domain group 21 (TAIR:AT2G24740.1); Has 4570 Blast hits to 4388 proteins in 399 species: Archae - 0; Bacteria - 282; Metazoa - 2143; Fungi - 453; Plants - 1096; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink). protein_id AT1G17770.1p transcript_id AT1G17770.1 protein_id AT1G17770.1p transcript_id AT1G17770.1
At1g17780	chr1:006124095	0.0	W/6124095-6124157,6124254-6124629,6124722-6124876,6124969-6125166	AT1G17780.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F2H15.22, F2H15_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G17780.2p transcript_id AT1G17780.2 protein_id AT1G17780.2p transcript_id AT1G17780.2
AT1G17780	chr1:006124095	0.0	W/6124095-6124157,6124254-6124629,6124722-6124876,6124969-6125166	AT1G17780.3 AT1G17780.3 CDS transmembrane protein, putative
AT1G17780	chr1:006124095	0.0	W/6124095-6124157,6124254-6124629,6124722-6124876,6124969-6125166	AT1G17780.6 AT1G17780.6 CDS transmembrane protein, putative
AT1G17780	chr1:006124317	0.0	W/6124317-6124629,6124722-6124876,6124969-6125166	AT1G17780.4 AT1G17780.4 CDS transmembrane protein, putative
AT1G17780	chr1:006124317	0.0	W/6124317-6124629,6124722-6124876,6124969-6125166	AT1G17780.5 AT1G17780.5 CDS transmembrane protein, putative
At1g17780	chr1:006124317	0.0	W/6124317-6124629,6124722-6124978	AT1G17780.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F2H15.22, F2H15_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17780.1p transcript_id AT1G17780.1 protein_id AT1G17780.1p transcript_id AT1G17780.1
At1g17790	chr1:006125532	0.0	C/6125532-6125581,6125660-6125761,6125878-6125923,6126011-6127276	AT1G17790.1 CDS DNA-binding bromodomain-containing protein [TAIR10] CDS gene_syn F2H15.2, F2H15_2 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function DNA binding|GO:0003677||ISS product DNA-binding bromodomain-containing protein note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: global transcription factor group E3 (TAIR:AT1G73150.1); Has 10948 Blast hits to 7134 proteins in 556 species: Archae - 16; Bacteria - 1050; Metazoa - 4460; Fungi - 1290; Plants - 1025; Viruses - 165; Other Eukaryotes - 2942 (source: NCBI BLink). protein_id AT1G17790.1p transcript_id AT1G17790.1 protein_id AT1G17790.1p transcript_id AT1G17790.1
At1g17800	chr1:006128828	0.0	W/6128828-6129038,6129180-6129391	AT1G17800.1 CDS early nodulin-like protein 22 [TAIR10] CDS gene_syn AtENODL22, ENODL22, F2H15.3, F2H15_3, early nodulin-like protein 22 gene ENODL22 go_component endomembrane system|GO:0012505||IEA go_function copper ion binding|GO:0005507||IEA go_function electron carrier activity|GO:0009055||IEA go_function copper ion binding|GO:0005507||ISS product early nodulin-like protein 22 note early nodulin-like protein 22 (ENODL22); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, 4 leaf senescence stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plantacyanin (TAIR:AT2G02850.1); Has 1120 Blast hits to 1103 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17800.1p transcript_id AT1G17800.1 protein_id AT1G17800.1p transcript_id AT1G17800.1
At1g17810	chr1:006130209	0.0	W/6130209-6130350,6130651-6130916,6131047-6131442	AT1G17810.1 CDS beta-tonoplast intrinsic protein [TAIR10] CDS gene_syn BETA-TIP, F2H15.4, F2H15_4, beta-tonoplast intrinsic protein gene BETA-TIP function beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_process transport|GO:0006810||ISS go_function water channel activity|GO:0015250||ISS product beta-tonoplast intrinsic protein note beta-tonoplast intrinsic protein (BETA-TIP); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: Aquaporin-like superfamily protein (TAIR:AT1G73190.1); Has 10707 Blast hits to 10694 proteins in 2147 species: Archae - 83; Bacteria - 5023; Metazoa - 1508; Fungi - 447; Plants - 2508; Viruses - 2; Other Eukaryotes - 1136 (source: NCBI BLink). protein_id AT1G17810.1p transcript_id AT1G17810.1 protein_id AT1G17810.1p transcript_id AT1G17810.1
At1g17820	chr1:006131751	0.0	C/6131751-6132425,6132515-6132709,6132882-6132976,6133122-6133488,6133591-6134221,6134308-6134549,6134909-6135115	AT1G17820.1 CDS testis-expressed sequence 2-like protein (DUF2404) [TAIR10] CDS gene_syn F2H15.5, F2H15_5 go_component endomembrane system|GO:0012505||IEA go_process signal transduction|GO:0007165|15358268|ISS go_function phosphoinositide binding|GO:0035091|15358268|ISS product Putative integral membrane protein conserved region (DUF2404) note Putative integral membrane protein conserved region (DUF2404); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Putative integral membrane protein conserved region (DUF2404) (TAIR:AT1G73200.1); Has 588 Blast hits to 406 proteins in 156 species: Archae - 0; Bacteria - 7; Metazoa - 150; Fungi - 264; Plants - 48; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). protein_id AT1G17820.1p transcript_id AT1G17820.1 protein_id AT1G17820.1p transcript_id AT1G17820.1
At1g17830	chr1:006136118	0.0	C/6136118-6136386,6136515-6136606,6136696-6136781,6136883-6137117,6137203-6137420,6138059-6138172	AT1G17830.1 CDS hypothetical protein (DUF789) [TAIR10] CDS gene_syn F2H15.6, F2H15_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF789) note Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G73210.1); Has 265 Blast hits to 257 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G17830.1p transcript_id AT1G17830.1 protein_id AT1G17830.1p transcript_id AT1G17830.1
At1g17840	chr1:006142870	0.0	W/6142870-6143253,6143479-6143768,6143858-6144029,6144111-6144233,6144317-6144445,6144533-6144727,6144808-6144894,6144976-6145248,6145337-6145444,6145544-6145894	AT1G17840.1 CDS white-brown complex homolog protein 11 [TAIR10] CDS gene_syn ABCG11, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATWBC11, COF1, CUTICULAR DEFECT AND ORGAN FUSION 1, DESPERADO, DSO, F2H15.7, F2H15_7, WBC11, white-brown complex homolog protein 11 gene WBC11 function Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17727615|IDA go_component external side of plasma membrane|GO:0009897|17951461|IDA go_process fatty acid transport|GO:0015908|17951461|TAS go_process cutin transport|GO:0080051|17951461|IMP go_function fatty acid transporter activity|GO:0015245|17951461|TAS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product white-brown complex homolog protein 11 note white-brown complex homolog protein 11 (WBC11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, fatty acid transporter activity; INVOLVED IN: cutin transport, fatty acid transport; LOCATED IN: plasma membrane, external side of plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1); Has 367567 Blast hits to 338203 proteins in 4071 species: Archae - 6733; Bacteria - 294034; Metazoa - 7509; Fungi - 6244; Plants - 5251; Viruses - 10; Other Eukaryotes - 47786 (source: NCBI BLink). protein_id AT1G17840.1p transcript_id AT1G17840.1 protein_id AT1G17840.1p transcript_id AT1G17840.1
At1g17850	chr1:006146470	0.0	C/6146470-6146623,6146782-6147084,6147179-6147282,6147446-6147537,6147775-6147937,6148047-6148196,6148314-6148367,6148494-6148820	AT1G17850.2 CDS Rhodanese/Cell cycle control phosphatase superfamily protein [TAIR10] CDS gene_syn F2H15.8, F2H15_8 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Rhodanese/Cell cycle control phosphatase superfamily protein note Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1). protein_id AT1G17850.2p transcript_id AT1G17850.2 protein_id AT1G17850.2p transcript_id AT1G17850.2
At1g17850	chr1:006146470	0.0	C/6146470-6146623,6146782-6147084,6147179-6147282,6147446-6147537,6147775-6147937,6148053-6148196,6148314-6148367,6148494-6148820	AT1G17850.1 CDS Rhodanese/Cell cycle control phosphatase superfamily protein [TAIR10] CDS gene_syn F2H15.8, F2H15_8 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Rhodanese/Cell cycle control phosphatase superfamily protein note Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5670 Blast hits to 5670 proteins in 1542 species: Archae - 13; Bacteria - 3184; Metazoa - 52; Fungi - 3; Plants - 118; Viruses - 0; Other Eukaryotes - 2300 (source: NCBI BLink). protein_id AT1G17850.1p transcript_id AT1G17850.1 protein_id AT1G17850.1p transcript_id AT1G17850.1
At1g17860	chr1:006149343	0.0	W/6149343-6149933	AT1G17860.1 CDS Kunitz family trypsin and protease inhibitor protein [TAIR10] CDS gene_syn F2H15.9, F2H15_9 go_component cell wall|GO:0005618|15593128|IDA go_component apoplast|GO:0048046|18538804|IDA go_function endopeptidase inhibitor activity|GO:0004866||IEA go_process biological_process|GO:0008150||ND go_function endopeptidase inhibitor activity|GO:0004866||ISS product Kunitz family trypsin and protease inhibitor protein note Kunitz family trypsin and protease inhibitor protein; FUNCTIONS IN: endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: kunitz trypsin inhibitor 1 (TAIR:AT1G73260.1); Has 1019 Blast hits to 1019 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1018; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G17860.1p transcript_id AT1G17860.1 protein_id AT1G17860.1p transcript_id AT1G17860.1
At1g17870	chr1:006150036	0.0	C/6150036-6150394,6150470-6150624,6150708-6150946,6151030-6151254,6151349-6151546,6151640-6152185	AT1G17870.1 CDS ethylene-dependent gravitropism-deficient and yellow-green-like 3 [TAIR10] CDS gene_syn ATEGY3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, F2H15.10, F2H15_10 gene EGY3 function S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442 454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171 179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria. go_component chloroplast|GO:0009507||IEA go_process response to heat|GO:0009408|17059409|IEP go_process response to high light intensity|GO:0009644|17059409|IEP go_process response to hydrogen peroxide|GO:0042542|17059409|IEP product ethylene-dependent gravitropism-deficient and yellow-green-like 3 note ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 (EGY3); INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: Peptidase M50 family protein (TAIR:AT5G35220.1); Has 660 Blast hits to 652 proteins in 203 species: Archae - 107; Bacteria - 240; Metazoa - 53; Fungi - 13; Plants - 117; Viruses - 1; Other Eukaryotes - 129 (source: NCBI BLink). protein_id AT1G17870.1p transcript_id AT1G17870.1 protein_id AT1G17870.1p transcript_id AT1G17870.1
At1g17880	chr1:006152572	0.0	C/6152572-6152756,6152842-6152880,6152974-6153030,6153120-6153268,6153358-6153425	AT1G17880.1 CDS basic transcription factor 3 [TAIR10] CDS gene_syn ATBTF3, BTF3, F2H15.11, F2H15_11, basic transcription factor 3 gene BTF3 go_process response to salt stress|GO:0009651|17916636|IEP go_component cellular_component|GO:0005575||ND go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product basic transcription factor 3 note basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). protein_id AT1G17880.1p transcript_id AT1G17880.1 protein_id AT1G17880.1p transcript_id AT1G17880.1
At1g17890	chr1:006154478	0.0	C/6154478-6155440	AT1G17890.2 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F2H15.12, F2H15_12, GER2 gene GER2 go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function coenzyme binding|GO:0050662||IEA go_component cellular_component|GO:0005575||ND go_process GDP-L-fucose biosynthetic process|GO:0042350||ISS go_function catalytic activity|GO:0003824||ISS product NAD(P)-binding Rossmann-fold superfamily protein note GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (TAIR:AT1G73250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G17890.2p transcript_id AT1G17890.2 protein_id AT1G17890.2p transcript_id AT1G17890.2
At1g17890	chr1:006154478	0.0	C/6154478-6155440	AT1G17890.3 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F2H15.12, F2H15_12, GER2 gene GER2 go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function coenzyme binding|GO:0050662||IEA go_component cellular_component|GO:0005575||ND go_process GDP-L-fucose biosynthetic process|GO:0042350||ISS go_function catalytic activity|GO:0003824||ISS product NAD(P)-binding Rossmann-fold superfamily protein note GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (TAIR:AT1G73250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G17890.3p transcript_id AT1G17890.3 protein_id AT1G17890.3p transcript_id AT1G17890.3
At1g17890	chr1:006154478	0.0	C/6154478-6155442,6155575-6155596	AT1G17890.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F2H15.12, F2H15_12, GER2 gene GER2 go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function coenzyme binding|GO:0050662||IEA go_component cellular_component|GO:0005575||ND go_process GDP-L-fucose biosynthetic process|GO:0042350||ISS go_function catalytic activity|GO:0003824||ISS product NAD(P)-binding Rossmann-fold superfamily protein note GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (TAIR:AT1G73250.1); Has 26865 Blast hits to 26861 proteins in 2796 species: Archae - 647; Bacteria - 15991; Metazoa - 493; Fungi - 205; Plants - 723; Viruses - 26; Other Eukaryotes - 8780 (source: NCBI BLink). protein_id AT1G17890.1p transcript_id AT1G17890.1 protein_id AT1G17890.1p transcript_id AT1G17890.1
At1g17900	chr1:006157368	0.0	C/6157368-6158130	AT1G17900.1 [TAIR10] mRNA
At1g17900	chr1:006157368	0.0	C/6157368-6158130	AT1G17900 [TAIR10] TE pseudo gene_syn F2H15.23, F2H15_23 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1); similar to hypothetical protein PF10_0266 [Plasmodium falciparum 3D7] (GB:NP_700739.1)
At1g17910	chr1:006159126	0.0	W/6159126-6160146,6160242-6160367,6160468-6161615	AT1G17910.1 CDS Wall-associated kinase family protein [TAIR10] CDS gene_syn F2H15.13, F2H15_13 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function kinase activity|GO:0016301||ISS product Wall-associated kinase family protein note Wall-associated kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G19390.1); Has 115640 Blast hits to 113901 proteins in 3774 species: Archae - 105; Bacteria - 13025; Metazoa - 42944; Fungi - 9529; Plants - 32969; Viruses - 430; Other Eukaryotes - 16638 (source: NCBI BLink). protein_id AT1G17910.1p transcript_id AT1G17910.1 protein_id AT1G17910.1p transcript_id AT1G17910.1
At1g17920	chr1:006162214	0.0	C/6162214-6162564,6162648-6162737,6162831-6163093,6163171-6163351,6163431-6163631,6163715-6163816,6163900-6164355,6164445-6164633,6164722-6164839,6164921-6165033	AT1G17920.1 CDS homeodomain GLABROUS 12 [TAIR10] CDS gene_syn F2H15.14, F2H15_14, HDG12, homeodomain GLABROUS 12 gene HDG12 function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process trichome branching|GO:0010091|16778018|IGI go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product homeodomain GLABROUS 12 note homeodomain GLABROUS 12 (HDG12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 11 (TAIR:AT1G73360.1); Has 11255 Blast hits to 11173 proteins in 538 species: Archae - 0; Bacteria - 0; Metazoa - 8589; Fungi - 214; Plants - 2276; Viruses - 3; Other Eukaryotes - 173 (source: NCBI BLink). protein_id AT1G17920.1p transcript_id AT1G17920.1 protein_id AT1G17920.1p transcript_id AT1G17920.1
AT1G17920	chr1:006162214	0.0	C/6162214-6162564,6162648-6162737,6162831-6163093,6163171-6163351,6163431-6163631,6163715-6163816,6163900-6164355,6164445-6164633,6164722-6164839,6164921-6165033	AT1G17920.2 AT1G17920.2 CDS homeodomain GLABROUS 12
At1g17930	chr1:006166638	0.0	C/6166638-6166835,6166918-6167298,6167373-6167525,6167632-6168279,6168376-6168432	AT1G17930.1 CDS Aminotransferase-like, plant mobile domain family protein [TAIR10] CDS gene_syn F2H15.15, F2H15_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Aminotransferase-like, plant mobile domain family protein note Aminotransferase-like, plant mobile domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT2G25010.1); Has 691 Blast hits to 683 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 691; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G17930.1p transcript_id AT1G17930.1 protein_id AT1G17930.1p transcript_id AT1G17930.1
AT1G17930	chr1:006166638	0.0	C/6166638-6166835,6166918-6167298,6167373-6167525,6167632-6168279,6168376-6168432	AT1G17930.2 AT1G17930.2 CDS Aminotransferase-like, plant mobile domain family protein
At1g17940	chr1:006169621	0.0	C/6169621-6169708,6169797-6169898,6169989-6170143,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.1 CDS Endosomal targeting BRO1-like domain-containing protein [TAIR10] CDS gene_syn F2H15.16, F2H15_16 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Endosomal targeting BRO1-like domain-containing protein note Endosomal targeting BRO1-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G73390.3); Has 122 Blast hits to 122 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 25; Plants - 96; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G17940.1p transcript_id AT1G17940.1 protein_id AT1G17940.1p transcript_id AT1G17940.1
AT1G17940	chr1:006169621	0.0	C/6169621-6169708,6169797-6169898,6169989-6170143,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.3 AT1G17940.3 CDS Endosomal targeting BRO1-like domain-containing protein
AT1G17940	chr1:006169621	0.0	C/6169621-6169708,6169797-6169898,6169989-6170143,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.5 AT1G17940.5 CDS Endosomal targeting BRO1-like domain-containing protein
AT1G17940	chr1:006169621	0.0	C/6169621-6169708,6169797-6169898,6169989-6170143,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.6 AT1G17940.6 CDS Endosomal targeting BRO1-like domain-containing protein
AT1G17940	chr1:006169873	0.0	C/6169873-6169898,6169989-6170103,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.4 AT1G17940.4 CDS Endosomal targeting BRO1-like domain-containing protein
AT1G17940	chr1:006170321	0.0	C/6170321-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.2 AT1G17940.2 CDS Endosomal targeting BRO1-like domain-containing protein
At1g17950	chr1:006177764	0.0	W/6177764-6177881,6178002-6178427,6178858-6179063	AT1G17950.1 CDS myb domain protein 52 [TAIR10] CDS gene_syn ATMYB52, BW52, F2H15.17, F2H15_17, MYB DOMAIN PROTEIN 52, MYB52, myb domain protein 52 gene MYB52 function putative transcription factor: R2R3-MYB transcription family go_component nucleus|GO:0005634|18952777|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9839469|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product myb domain protein 52 note myb domain protein 52 (MYB52); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 54 (TAIR:AT1G73410.1); Has 8890 Blast hits to 7951 proteins in 553 species: Archae - 0; Bacteria - 0; Metazoa - 901; Fungi - 603; Plants - 5404; Viruses - 5; Other Eukaryotes - 1977 (source: NCBI BLink). protein_id AT1G17950.1p transcript_id AT1G17950.1 protein_id AT1G17950.1p transcript_id AT1G17950.1
At1g17960	chr1:006181015	0.0	C/6181015-6181122,6181226-6181297,6181526-6181597,6181696-6181914,6182007-6182099,6182181-6182273,6182369-6182455,6182546-6182578,6182822-6182916,6182973-6183045,6183195-6183495,6183607-6183737	AT1G17960.1 CDS Threonyl-tRNA synthetase [TAIR10] CDS gene_syn F2H15.18, F2H15_18 go_component cytoplasm|GO:0005737||IEA go_process translation|GO:0006412||IEA go_process tRNA aminoacylation for protein translation|GO:0006418||IEA go_process threonyl-tRNA aminoacylation|GO:0006435||IEA go_function nucleotide binding|GO:0000166||IEA go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA go_function threonine-tRNA ligase activity|GO:0004829||IEA go_function ATP binding|GO:0005524||IEA go_process threonyl-tRNA aminoacylation|GO:0006435||ISS go_function threonine-tRNA ligase activity|GO:0004829||ISS product Threonyl-tRNA synthetase note Threonyl-tRNA synthetase; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: inflorescence meristem, root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1); Has 16132 Blast hits to 11197 proteins in 2892 species: Archae - 329; Bacteria - 9775; Metazoa - 548; Fungi - 378; Plants - 140; Viruses - 0; Other Eukaryotes - 4962 (source: NCBI BLink). protein_id AT1G17960.1p transcript_id AT1G17960.1 protein_id AT1G17960.1p transcript_id AT1G17960.1
AT1G17960	chr1:006181015	0.0	C/6181015-6181122,6181226-6181297,6181526-6181597,6181696-6181914,6182007-6182099,6182181-6182273,6182369-6182455,6182546-6182578,6182822-6182916,6183341-6183495,6183607-6183737	AT1G17960.2 AT1G17960.2 CDS Threonyl-tRNA synthetase
At1g17970	chr1:006185032	0.0	W/6185032-6185604,6186171-6186335,6186660-6186758,6186844-6186978,6187068-6187202	AT1G17970.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F2H15.19, F2H15_19 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G73760.1); Has 8802 Blast hits to 8789 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 2364; Fungi - 695; Plants - 4341; Viruses - 10; Other Eukaryotes - 1392 (source: NCBI BLink). protein_id AT1G17970.1p transcript_id AT1G17970.1 protein_id AT1G17970.1p transcript_id AT1G17970.1
AT1G17970	chr1:006185032	0.0	W/6185032-6185604,6186171-6186407	AT1G17970.2 AT1G17970.2 CDS RING/U-box superfamily protein
At1g17980	chr1:006187742	0.0	C/6187742-6187781,6187880-6187947,6188033-6188878,6188969-6189133,6189211-6189540,6189627-6189689,6189795-6189908,6190184-6190318	AT1G17980.2 CDS poly(A) polymerase 1 [TAIR10] CDS gene_syn F2H15.20, F2H15_20, PAPS1, poly(A) polymerase 1 gene PAPS1 function Encodes a poly(A) polymerase. Located in the nucleus. go_component nucleus|GO:0005634|15297145|IDA go_component nucleus|GO:0005634|19956626|IDA go_process RNA polyadenylation|GO:0043631|15297145|IDA go_function protein binding|GO:0005515|15297145|IPI go_function nucleotidyltransferase activity|GO:0016779||ISS product poly(A) polymerase 1 note poly(A) polymerase 1 (PAPS1); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: poly(A) polymerase 2 (TAIR:AT2G25850.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G17980.2p transcript_id AT1G17980.2 protein_id AT1G17980.2p transcript_id AT1G17980.2
At1g17980	chr1:006187742	0.0	C/6187742-6187781,6187880-6187947,6188033-6188878,6188969-6189133,6189211-6189540,6189627-6189689,6189795-6189908,6190184-6190345,6190435-6190497,6190900-6191007,6191107-6191184,6191314-6191418	AT1G17980.1 CDS poly(A) polymerase 1 [TAIR10] CDS gene_syn F2H15.20, F2H15_20, PAPS1, poly(A) polymerase 1 gene PAPS1 function Encodes a poly(A) polymerase. Located in the nucleus. go_component nucleus|GO:0005634|15297145|IDA go_component nucleus|GO:0005634|19956626|IDA go_process RNA polyadenylation|GO:0043631|15297145|IDA go_function protein binding|GO:0005515|15297145|IPI go_function nucleotidyltransferase activity|GO:0016779||ISS product poly(A) polymerase 1 note poly(A) polymerase 1 (PAPS1); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.9); Has 815 Blast hits to 805 proteins in 221 species: Archae - 0; Bacteria - 17; Metazoa - 265; Fungi - 212; Plants - 181; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). protein_id AT1G17980.1p transcript_id AT1G17980.1 protein_id AT1G17980.1p transcript_id AT1G17980.1
At1g17990	chr1:006192455	0.0	C/6192455-6192762,6192829-6192990,6193092-6193222,6193318-6193434,6193688-6193755	AT1G17990.2 CDS FMN-linked oxidoreductases superfamily protein [TAIR10] CDS gene_syn T10F20.3 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function FMN binding|GO:0010181||IEA go_function oxidoreductase activity|GO:0016491||IEA product FMN-linked oxidoreductases superfamily protein note FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: FMN-linked oxidoreductases superfamily protein (TAIR:AT1G18020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G17990.2p transcript_id AT1G17990.2 protein_id AT1G17990.2p transcript_id AT1G17990.2
At1g17990	chr1:006192455	0.0	C/6192455-6192762,6192829-6192990,6193092-6193222,6193318-6193458,6193688-6193755	AT1G17990.1 CDS FMN-linked oxidoreductases superfamily protein [TAIR10] CDS gene_syn T10F20.3 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function FMN binding|GO:0010181||IEA go_function oxidoreductase activity|GO:0016491||IEA product FMN-linked oxidoreductases superfamily protein note FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: FMN-linked oxidoreductases superfamily protein (TAIR:AT1G18020.1); Has 13076 Blast hits to 13058 proteins in 2049 species: Archae - 127; Bacteria - 9786; Metazoa - 29; Fungi - 859; Plants - 433; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink). protein_id AT1G17990.1p transcript_id AT1G17990.1 protein_id AT1G17990.1p transcript_id AT1G17990.1
At1g18000	chr1:006194668	0.0	C/6194668-6196047	AT1G18000.1 CDS Major facilitator superfamily protein [TAIR10] CDS go_process transmembrane transport|GO:0055085||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G18010.1); Has 758 Blast hits to 750 proteins in 174 species: Archae - 0; Bacteria - 91; Metazoa - 141; Fungi - 422; Plants - 82; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). protein_id AT1G18000.1p transcript_id AT1G18000.1 protein_id AT1G18000.1p transcript_id AT1G18000.1
At1g18010	chr1:006199980	0.0	W/6199980-6201359	AT1G18010.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn T10F20.2, T10F20_2 go_process transmembrane transport|GO:0055085||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G18000.1); Has 758 Blast hits to 750 proteins in 174 species: Archae - 0; Bacteria - 91; Metazoa - 141; Fungi - 422; Plants - 82; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). protein_id AT1G18010.1p transcript_id AT1G18010.1 protein_id AT1G18010.1p transcript_id AT1G18010.1
At1g18020	chr1:006202272	0.0	W/6202272-6202339,6202569-6202709,6202805-6202935,6203037-6203198,6203265-6203572	AT1G18020.1 CDS FMN-linked oxidoreductases superfamily protein [TAIR10] CDS go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function FMN binding|GO:0010181||IEA go_function oxidoreductase activity|GO:0016491||IEA product FMN-linked oxidoreductases superfamily protein note FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: FMN-linked oxidoreductases superfamily protein (TAIR:AT1G17990.1); Has 13076 Blast hits to 13058 proteins in 2049 species: Archae - 127; Bacteria - 9786; Metazoa - 29; Fungi - 859; Plants - 433; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink). protein_id AT1G18020.1p transcript_id AT1G18020.1 protein_id AT1G18020.1p transcript_id AT1G18020.1
AT1G18035	chr1:006204393	0.0	C/6204393-6204711,6204728-6204765	AT1G18035.1 AT1G18035.1 CDS hypothetical protein
At1g18030	chr1:006204400	0.0	W/6204400-6204716,6204877-6204985,6205087-6205123,6205230-6205274,6205435-6205487,6205602-6205763,6205849-6205932,6206125-6206214,6206320-6206367,6206568-6206678	AT1G18030.1 CDS Protein phosphatase 2C family protein [TAIR10] CDS gene_syn T10F20.4, T10F20_4 go_function catalytic activity|GO:0003824||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Protein phosphatase 2C family protein note Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: DNA-binding protein phosphatase 1 (TAIR:AT2G25620.1); Has 6093 Blast hits to 6074 proteins in 324 species: Archae - 4; Bacteria - 54; Metazoa - 1500; Fungi - 736; Plants - 2511; Viruses - 9; Other Eukaryotes - 1279 (source: NCBI BLink). protein_id AT1G18030.1p transcript_id AT1G18030.1 protein_id AT1G18030.1p transcript_id AT1G18030.1
At1g18030	chr1:006204400	0.0	W/6204400-6204716,6204877-6204985,6205087-6205123,6205230-6205274,6205435-6205487,6205602-6205763,6205849-6205932,6206125-6206218,6206320-6206336	AT1G18030.2 CDS Protein phosphatase 2C family protein [TAIR10] CDS gene_syn T10F20.4, T10F20_4 go_function catalytic activity|GO:0003824||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Protein phosphatase 2C family protein note Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51470.1); Has 5792 Blast hits to 5781 proteins in 307 species: Archae - 2; Bacteria - 31; Metazoa - 1378; Fungi - 630; Plants - 2460; Viruses - 9; Other Eukaryotes - 1282 (source: NCBI BLink). protein_id AT1G18030.2p transcript_id AT1G18030.2 protein_id AT1G18030.2p transcript_id AT1G18030.2
At1g18040	chr1:006207128	0.0	C/6207128-6207176,6207281-6207538,6207618-6207853,6208007-6208132,6208562-6208670,6208757-6209055,6209201-6209299	AT1G18040.1 CDS cyclin-dependent kinase D1;3 [TAIR10] CDS gene_syn AT;CDCKD;3, CAK2AT, CDKD1;3, CYCLIN-DEPENDENT KINASE D1;3, T10F20.5, T10F20_5, cyclin-dependent kinase D1;3 gene CDKD1;3 go_component nucleus|GO:0005634|15610358|IDA go_process regulation of cell cycle|GO:0051726|16024551|TAS go_function protein kinase activity|GO:0004672|16024551|TAS go_function kinase activity|GO:0016301||ISS product cyclin-dependent kinase D1;3 note cyclin-dependent kinase D1;3 (CDKD1;3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;1 (TAIR:AT1G73690.1); Has 119527 Blast hits to 118054 proteins in 4087 species: Archae - 74; Bacteria - 13556; Metazoa - 44153; Fungi - 12365; Plants - 29368; Viruses - 395; Other Eukaryotes - 19616 (source: NCBI BLink). protein_id AT1G18040.1p transcript_id AT1G18040.1 protein_id AT1G18040.1p transcript_id AT1G18040.1
At1g18050	chr1:006209962	0.0	C/6209962-6210242,6210485-6210555,6211266-6211588	AT1G18050.1 CDS SWAP/surp RNA-binding domain protein [TAIR10] CDS gene_syn T10F20.6 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_component cellular_component|GO:0005575||ND go_process RNA processing|GO:0006396||ISS go_function RNA binding|GO:0003723||ISS product SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein note SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30370.1); Has 226 Blast hits to 225 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 11; Plants - 84; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G18050.1p transcript_id AT1G18050.1 protein_id AT1G18050.1p transcript_id AT1G18050.1
At1g18060	chr1:006212065	0.0	C/6212065-6212355,6212485-6212544,6212650-6212832,6213168-6213314	AT1G18060.1 CDS microbial collagenase [TAIR10] CDS gene_syn T10F20.7 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G18060.1p transcript_id AT1G18060.1 protein_id AT1G18060.1p transcript_id AT1G18060.1
At1g18070	chr1:006214236	0.0	C/6214236-6214294,6214378-6214450,6214585-6214749,6214830-6214894,6215018-6215153,6215239-6215344,6215593-6215743,6215827-6215891,6215979-6216133,6216227-6216289,6216415-6216486,6216629-6216674,6216758-6216869,6217081-6217185,6217294-6217347,6217453-6217503,6217580-6217654,6217737-6217778,6218208-6218211	AT1G18070.1 CDS Translation elongation factor EF1A/initiation factor IF2gamma family protein [TAIR10] CDS gene_syn T10F20.8 go_component vacuole|GO:0005773|15539469|IDA go_process translational termination|GO:0006415||IEA go_function translation release factor activity|GO:0003747||IEA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_function translation factor activity, nucleic acid binding|GO:0008135||ISS product Translation elongation factor EF1A/initiation factor IF2gamma family protein note Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity; INVOLVED IN: translational termination; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Yeast eukaryotic release factor (InterPro:IPR003285); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 80701 Blast hits to 80623 proteins in 18440 species: Archae - 844; Bacteria - 33853; Metazoa - 20485; Fungi - 12327; Plants - 1789; Viruses - 3; Other Eukaryotes - 11400 (source: NCBI BLink). protein_id AT1G18070.1p transcript_id AT1G18070.1 protein_id AT1G18070.1p transcript_id AT1G18070.1
At1g18070	chr1:006214236	0.0	C/6214236-6214294,6214378-6214450,6214585-6214749,6214830-6214894,6215018-6215153,6215239-6215344,6215593-6215743,6215827-6215891,6215979-6216133,6216227-6216289,6216415-6216486,6216629-6216674,6216758-6216869,6217081-6217185,6217294-6217347,6217453-6217503,6217580-6217654,6217737-6217778,6218208-6218211	AT1G18070.2 CDS Translation elongation factor EF1A/initiation factor IF2gamma family protein [TAIR10] CDS gene_syn T10F20.8 go_component vacuole|GO:0005773|15539469|IDA go_process translational termination|GO:0006415||IEA go_function translation release factor activity|GO:0003747||IEA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_function translation factor activity, nucleic acid binding|GO:0008135||ISS product Translation elongation factor EF1A/initiation factor IF2gamma family protein note Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity; INVOLVED IN: translational termination; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Yeast eukaryotic release factor (InterPro:IPR003285); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18070.2p transcript_id AT1G18070.2 protein_id AT1G18070.2p transcript_id AT1G18070.2
At1g18070	chr1:006214236	0.0	C/6214236-6214294,6214378-6214450,6214585-6214749,6214830-6214894,6215018-6215153,6215239-6215377,6215593-6215743,6215827-6215891,6215979-6216133,6216227-6216289,6216415-6216486,6216629-6216674,6216758-6216869,6217081-6217185,6217294-6217347,6217453-6217503,6217580-6217654,6217737-6217778,6218208-6218211	AT1G18070.3 CDS Translation elongation factor EF1A/initiation factor IF2gamma family protein [TAIR10] CDS gene_syn T10F20.8 go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_function translation factor activity, nucleic acid binding|GO:0008135||ISS product Translation elongation factor EF1A/initiation factor IF2gamma family protein note Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3). protein_id AT1G18070.3p transcript_id AT1G18070.3 protein_id AT1G18070.3p transcript_id AT1G18070.3
At1g18075	chr1:006220648	0.0	W/6220648-6220833	AT1G18075.1 [TAIR10] miRNA gene_syn MICRORNA 159, MIR159, MIR159B, microRNA159B gene MIR159B function Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCUU. Functions redundantly with MIR159A. Plants that are doubly mutated for MIR159AB have curled leaves and reduced stature. go_component cellular_component|GO:0005575||ND go_process response to abscisic acid stimulus|GO:0009737|17217461|IEP go_process negative regulation of abscisic acid mediated signaling pathway|GO:0009788|17217461|IMP go_process gene silencing by miRNA|GO:0035195|15200956|TAS go_function molecular_function|GO:0003674||ND product MIR159B (microRNA159B); miRNA transcript_id AT1G18075.1
At1g18080	chr1:006222325	0.0	W/6222325-6223206,6223800-6223901	AT1G18080.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn ATARCA, RACK1A, RACK1A_AT, RECEPTOR FOR ACTIVATED C KINASE 1 A, T10F20.9, WD-40 REPEAT PROTEIN ATARCA gene ATARCA function Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. go_component chloroplast|GO:0009507|18431481|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component heterotrimeric G-protein complex|GO:0005834||ISS go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note ATARCA; FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosolic ribosome, chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1B (TAIR:AT1G48630.1); Has 86693 Blast hits to 36128 proteins in 955 species: Archae - 98; Bacteria - 10140; Metazoa - 33986; Fungi - 19643; Plants - 11429; Viruses - 3; Other Eukaryotes - 11394 (source: NCBI BLink). protein_id AT1G18080.1p transcript_id AT1G18080.1 protein_id AT1G18080.1p transcript_id AT1G18080.1
At1g18090	chr1:006224539	0.0	W/6224539-6224616,6224751-6224787,6224974-6225148,6225246-6225324,6225744-6225788,6225866-6226015,6226114-6226228,6226314-6226414,6226500-6226597,6226681-6226773,6226953-6227715	AT1G18090.1 CDS 5'-3' exonuclease family protein [TAIR10] CDS gene_syn T10F20.10 go_process DNA repair|GO:0006281||IEA go_function DNA binding|GO:0003677||IEA go_function catalytic activity|GO:0003824||IEA go_function nuclease activity|GO:0004518||IEA go_component cellular_component|GO:0005575||ND go_process DNA repair|GO:0006281||ISS go_function nuclease activity|GO:0004518||ISS product 5'-3' exonuclease family protein note 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5&apos;-3&apos; exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2134 Blast hits to 2045 proteins in 397 species: Archae - 265; Bacteria - 69; Metazoa - 518; Fungi - 574; Plants - 189; Viruses - 16; Other Eukaryotes - 503 (source: NCBI BLink). protein_id AT1G18090.1p transcript_id AT1G18090.1 protein_id AT1G18090.1p transcript_id AT1G18090.1
At1g18090	chr1:006224539	0.0	W/6224539-6224616,6224751-6224787,6224974-6225152,6225250-6225324,6225744-6225788,6225866-6226015,6226114-6226228,6226314-6226414,6226500-6226597,6226681-6226773,6226953-6227715	AT1G18090.2 CDS 5'-3' exonuclease family protein [TAIR10] CDS gene_syn T10F20.10 go_process DNA repair|GO:0006281||IEA go_function DNA binding|GO:0003677||IEA go_function catalytic activity|GO:0003824||IEA go_function nuclease activity|GO:0004518||IEA go_component cellular_component|GO:0005575||ND go_process DNA repair|GO:0006281||ISS go_function nuclease activity|GO:0004518||ISS product 5'-3' exonuclease family protein note 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5&apos;-3&apos; exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2139 Blast hits to 2052 proteins in 399 species: Archae - 267; Bacteria - 71; Metazoa - 522; Fungi - 572; Plants - 187; Viruses - 16; Other Eukaryotes - 504 (source: NCBI BLink). protein_id AT1G18090.2p transcript_id AT1G18090.2 protein_id AT1G18090.2p transcript_id AT1G18090.2
At1g18100	chr1:006228049	0.0	C/6228049-6228272,6229125-6229165,6229292-6229353,6229916-6230110	AT1G18100.1 CDS PEBP (phosphatidylethanolamine-binding protein) family protein [TAIR10] CDS gene_syn E12A11, MFT, MOTHER OF FT AND TFL1, T10F20.11 gene E12A11 function Encodes a member of the FT and TFL1 family of phosphatidylethanolamine-binding proteins. It is expressed in seeds and up-regulated in response to ABA. Loss of function mutants show decreased rate of germination in the presence of ABA. ABA dependent regulation is mediated by both ABI3 and ABI5. ABI5 promotes MFT expression, primarily in the radicle-hypocotyl transition zone and ABI3 suppresses it in the seed. go_component nucleus|GO:0005634|20551347|IDA go_process response to abscisic acid stimulus|GO:0009737|20551347|IMP go_process positive regulation of seed germination|GO:0010030|20551347|IMP go_function phosphatidylethanolamine binding|GO:0008429||ISS product PEBP (phosphatidylethanolamine-binding protein) family protein note E12A11; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT5G03840.1); Has 2417 Blast hits to 2417 proteins in 371 species: Archae - 0; Bacteria - 118; Metazoa - 639; Fungi - 192; Plants - 1429; Viruses - 3; Other Eukaryotes - 36 (source: NCBI BLink). protein_id AT1G18100.1p transcript_id AT1G18100.1 protein_id AT1G18100.1p transcript_id AT1G18100.1
At1g18120	chr1:006232092	0.0	W/6232092-6233926	AT1G18120.1 [TAIR10] pseudogene
At1g18130	chr1:006235895	0.0	W/6235895-6235942,6238093-6238314,6238410-6238481,6238567-6238638,6238716-6238799	AT1G18130.1 CDS Class II aaRS and biotin synthetases superfamily protein [TAIR10] CDS gene_syn T10F20.13 go_component membrane|GO:0016020|17432890|IDA go_process translation|GO:0006412||IEA go_process threonyl-tRNA aminoacylation|GO:0006435||IEA go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA go_function threonine-tRNA ligase activity|GO:0004829||IEA go_function ATP binding|GO:0005524||IEA go_process translation|GO:0006412||ISS go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS go_function ATP binding|GO:0005524||ISS product Class II aaRS and biotin synthetases superfamily protein note Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: threonine-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1); Has 8735 Blast hits to 8735 proteins in 2871 species: Archae - 292; Bacteria - 5591; Metazoa - 245; Fungi - 244; Plants - 92; Viruses - 0; Other Eukaryotes - 2271 (source: NCBI BLink). protein_id AT1G18130.1p transcript_id AT1G18130.1 protein_id AT1G18130.1p transcript_id AT1G18130.1
At1g18140	chr1:006238986	0.0	C/6238986-6240103,6240205-6240333,6240564-6240808,6240911-6241062,6241292-6241393	AT1G18140.1 CDS laccase 1 [TAIR10] CDS gene_syn ATLAC1, LAC1, T10F20.14, laccase 1 gene LAC1 function putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). go_component endomembrane system|GO:0012505||IEA go_component apoplast|GO:0048046||IEA go_process lignin catabolic process|GO:0046274||IEA go_process oxidation reduction|GO:0055114||IEA go_function laccase activity|GO:0008471|15940465|ISS product laccase 1 note laccase 1 (LAC1); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 17 (TAIR:AT5G60020.1); Has 10262 Blast hits to 8380 proteins in 1481 species: Archae - 46; Bacteria - 4149; Metazoa - 461; Fungi - 3664; Plants - 1564; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink). protein_id AT1G18140.1p transcript_id AT1G18140.1 protein_id AT1G18140.1p transcript_id AT1G18140.1
At1g18150	chr1:006244641	0.0	C/6244641-6244718,6244818-6245016,6245107-6245223,6245311-6245384,6245499-6245636,6245728-6245883,6245996-6246145,6246304-6246363,6246466-6246593,6246686-6247088,6247316-6247582	AT1G18150.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn ATMPK8, T10F20.15 gene ATMPK8 function ATMPK8, go_component plasma membrane|GO:0005886|17317660|IDA go_process signal transduction|GO:0007165|12119167|IC go_function MAP kinase activity|GO:0004707|11544109|ISS go_function MAP kinase activity|GO:0004707|12119167|ISS product Protein kinase superfamily protein note ATMPK8; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1); Has 120729 Blast hits to 119418 proteins in 3824 species: Archae - 100; Bacteria - 13765; Metazoa - 44723; Fungi - 12383; Plants - 29341; Viruses - 570; Other Eukaryotes - 19847 (source: NCBI BLink). protein_id AT1G18150.1p transcript_id AT1G18150.1 protein_id AT1G18150.1p transcript_id AT1G18150.1
At1g18150	chr1:006244641	0.0	C/6244641-6244718,6244818-6245016,6245107-6245223,6245311-6245384,6245499-6245636,6245728-6245883,6245996-6246145,6246304-6246363,6246466-6246593,6246686-6247088,6247316-6247582	AT1G18150.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn ATMPK8, T10F20.15 gene ATMPK8 function ATMPK8, go_component plasma membrane|GO:0005886|17317660|IDA go_process signal transduction|GO:0007165|12119167|IC go_function MAP kinase activity|GO:0004707|11544109|ISS go_function MAP kinase activity|GO:0004707|12119167|ISS product Protein kinase superfamily protein note ATMPK8; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1); Has 120859 Blast hits to 119547 proteins in 3851 species: Archae - 100; Bacteria - 13809; Metazoa - 44780; Fungi - 12408; Plants - 29345; Viruses - 570; Other Eukaryotes - 19847 (source: NCBI BLink). protein_id AT1G18150.2p transcript_id AT1G18150.2 protein_id AT1G18150.2p transcript_id AT1G18150.2
At1g18150	chr1:006244641	0.0	C/6244641-6244718,6244818-6245016,6245107-6245223,6245311-6245384,6245499-6245636,6245728-6245883,6245996-6246145,6246304-6246363,6246466-6246593,6246686-6247088,6247316-6247582	AT1G18150.3 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn ATMPK8, T10F20.15 gene ATMPK8 function ATMPK8, go_process signal transduction|GO:0007165|12119167|IC go_function MAP kinase activity|GO:0004707|11544109|ISS go_function MAP kinase activity|GO:0004707|12119167|ISS product Protein kinase superfamily protein note ATMPK8; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1). protein_id AT1G18150.3p transcript_id AT1G18150.3 protein_id AT1G18150.3p transcript_id AT1G18150.3
At1g18160	chr1:006249126	0.0	W/6249126-6249614,6249771-6250211,6250437-6250540,6250893-6252028,6252106-6252146,6252253-6252321,6252404-6252504,6252695-6252773,6252871-6252969,6253040-6253108,6253309-6253358,6253451-6253627,6253712-6253835	AT1G18160.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn T10F20.16 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1); Has 123759 Blast hits to 122075 proteins in 4739 species: Archae - 100; Bacteria - 12949; Metazoa - 47184; Fungi - 11113; Plants - 33371; Viruses - 486; Other Eukaryotes - 18556 (source: NCBI BLink). protein_id AT1G18160.1p transcript_id AT1G18160.1 protein_id AT1G18160.1p transcript_id AT1G18160.1
AT1G18160	chr1:006249126	0.0	W/6249126-6249614,6249771-6250211,6250437-6250540,6250893-6252028,6252106-6252146,6252253-6252321,6252404-6252504,6252695-6252773,6252871-6252969,6253040-6253108,6253309-6253358,6253451-6253631	AT1G18160.2 AT1G18160.2 CDS Protein kinase superfamily protein
At1g18170	chr1:006254291	0.0	W/6254291-6254622,6254769-6254813,6255141-6255507	AT1G18170.1 CDS FKBP-like peptidyl-prolyl cis-trans isomerase family protein [TAIR10] CDS gene_syn T10F20.17 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_process protein folding|GO:0006457||IEA go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS go_function FK506 binding|GO:0005528||ISS product FKBP-like peptidyl-prolyl cis-trans isomerase family protein note FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G73655.1); Has 2743 Blast hits to 2728 proteins in 885 species: Archae - 0; Bacteria - 1518; Metazoa - 283; Fungi - 83; Plants - 455; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink). protein_id AT1G18170.1p transcript_id AT1G18170.1 protein_id AT1G18170.1p transcript_id AT1G18170.1
At1g18180	chr1:006255903	0.0	W/6255903-6255953,6256053-6256122,6256259-6256326,6256402-6256463,6256563-6256644,6256761-6256994,6257103-6257231,6257319-6257380,6257477-6257593,6257695-6257737	AT1G18180.1 CDS 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [TAIR10] CDS gene_syn T10F20.18 go_component plasma membrane|GO:0005886|15060130|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_process lipid metabolic process|GO:0006629||IEA go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA product Protein of unknown function (DUF1295) note FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G73650.3); Has 2065 Blast hits to 2065 proteins in 348 species: Archae - 0; Bacteria - 501; Metazoa - 79; Fungi - 152; Plants - 110; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink). protein_id AT1G18180.1p transcript_id AT1G18180.1 protein_id AT1G18180.1p transcript_id AT1G18180.1
AT1G18180	chr1:006255903	0.0	W/6255903-6255953,6256053-6256122,6256259-6256326,6256402-6256463,6256563-6256644,6256761-6256994,6257103-6257231,6257319-6257380,6257477-6257593,6257701-6257701	AT1G18180.2 AT1G18180.2 CDS 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295)
At1g18190	chr1:006257963	0.0	C/6257963-6258328,6258415-6258462,6258552-6258677,6258812-6258904,6259011-6259063,6259195-6259252,6259478-6259537,6259650-6259760,6259875-6260912,6261272-6261325	AT1G18190.1 CDS golgin candidate 2 [TAIR10] CDS gene_syn GC2, T10F20.19, golgin candidate 2 gene GC2 function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508 668 aa) portion of the protein. go_component Golgi apparatus|GO:0005794|18182439|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product golgin candidate 2 note golgin candidate 2 (GC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: golgin candidate 1 (TAIR:AT2G19950.1); Has 50245 Blast hits to 32562 proteins in 2069 species: Archae - 503; Bacteria - 6561; Metazoa - 24889; Fungi - 4466; Plants - 2316; Viruses - 153; Other Eukaryotes - 11357 (source: NCBI BLink). protein_id AT1G18190.1p transcript_id AT1G18190.1 protein_id AT1G18190.1p transcript_id AT1G18190.1
At1g18191	chr1:006262054	0.0	C/6262054-6262330	AT1G18191.1 [TAIR10] pseudogene
AT1G18193	chr1:006262602	0.0	W/6262602-6262687,6262746-6262813,6262908-6262957,6263030-6263158	AT1G18193.1 AT1G18193.1 CDS hypothetical protein
AT1G18197	chr1:006264247	0.0	C/6264247-6264412,6264524-6264762	AT1G18197.1 AT1G18197.1 CDS GCK domain protein
AT1G18197	chr1:006264442	0.0	C/6264442-6264762	AT1G18197.2 AT1G18197.2 CDS GCK domain protein
At1g18200	chr1:006265416	0.0	C/6265416-6265884,6266439-6266659	AT1G18200.1 CDS RAB GTPase homolog A6B [TAIR10] CDS gene_syn AtRABA6b, RAB GTPase homolog A6B, RABA6b, T10F20.21 gene RABA6b go_component intracellular|GO:0005622||IEA go_process intracellular protein transport|GO:0006886||IEA go_process nucleocytoplasmic transport|GO:0006913||IEA go_process signal transduction|GO:0007165||IEA go_process small GTPase mediated signal transduction|GO:0007264||IEA go_process protein transport|GO:0015031||IEA go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_function GTP binding|GO:0005525||ISS product RAB GTPase homolog A6B note RAB GTPase homolog A6B (RABA6b); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A6A (TAIR:AT1G73640.1); Has 27350 Blast hits to 27317 proteins in 747 species: Archae - 26; Bacteria - 153; Metazoa - 14378; Fungi - 3650; Plants - 3208; Viruses - 20; Other Eukaryotes - 5915 (source: NCBI BLink). protein_id AT1G18200.1p transcript_id AT1G18200.1 protein_id AT1G18200.1p transcript_id AT1G18200.1
At1g18210	chr1:006268273	0.0	C/6268273-6268785	AT1G18210.1 CDS Calcium-binding EF-hand family protein [TAIR10] CDS gene_syn T10F20.22 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_function calcium ion binding|GO:0005509||IEA go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product Calcium-binding EF-hand family protein note Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G73630.1); Has 26408 Blast hits to 16156 proteins in 1551 species: Archae - 2; Bacteria - 177; Metazoa - 9876; Fungi - 6429; Plants - 6014; Viruses - 0; Other Eukaryotes - 3910 (source: NCBI BLink). protein_id AT1G18210.1p transcript_id AT1G18210.1 protein_id AT1G18210.1p transcript_id AT1G18210.1
At1g18210	chr1:006268273	0.0	C/6268273-6268785	AT1G18210.2 CDS Calcium-binding EF-hand family protein [TAIR10] CDS gene_syn T10F20.22 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_function calcium ion binding|GO:0005509||IEA go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product Calcium-binding EF-hand family protein note Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G73630.1); Has 26408 Blast hits to 16156 proteins in 1551 species: Archae - 2; Bacteria - 177; Metazoa - 9876; Fungi - 6429; Plants - 6014; Viruses - 0; Other Eukaryotes - 3910 (source: NCBI BLink). protein_id AT1G18210.2p transcript_id AT1G18210.2 protein_id AT1G18210.2p transcript_id AT1G18210.2
At1g18220	chr1:006269670	0.0	C/6269670-6269807	AT1G18220.1 CDS purine permease 9 [TAIR10] CDS gene_syn ATPUP9, PUP9, T10F20.24, purine permease 9 gene PUP9 function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. go_component membrane|GO:0016020|10662864|TAS go_process purine transport|GO:0006863|10662864|TAS go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS product purine permease 9 note purine permease 9 (PUP9); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G18220.1p transcript_id AT1G18220.1 protein_id AT1G18220.1p transcript_id AT1G18220.1
At1g18230	chr1:006272666	0.0	C/6272666-6273307	AT1G18230.1 [TAIR10] pseudogene
At1g18240	chr1:006274286	0.0	C/6274286-6275594	AT1G18240.1 [TAIR10] mRNA
At1g18240	chr1:006274286	0.0	C/6274286-6275594	AT1G18240 [TAIR10] TE pseudo gene_syn T10F20.23 note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.2e-154 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)
At1g18250	chr1:006277024	0.0	C/6277024-6277372,6277452-6277776,6277948-6278005	AT1G18250.1 CDS Pathogenesis-related thaumatin superfamily protein [TAIR10] CDS gene_syn ATLP-1 gene ATLP-1 function encodes a thaumatin-like protein go_component endomembrane system|GO:0012505||IEA go_process response to other organism|GO:0051707||ISS product Pathogenesis-related thaumatin superfamily protein note ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G73620.1); Has 1566 Blast hits to 1554 proteins in 172 species: Archae - 0; Bacteria - 23; Metazoa - 54; Fungi - 80; Plants - 1398; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G18250.1p transcript_id AT1G18250.1 protein_id AT1G18250.1p transcript_id AT1G18250.1
At1g18250	chr1:006277024	0.0	C/6277024-6277372,6277452-6277779,6277948-6278005	AT1G18250.2 CDS Pathogenesis-related thaumatin superfamily protein [TAIR10] CDS gene_syn ATLP-1 gene ATLP-1 function encodes a thaumatin-like protein go_component endomembrane system|GO:0012505||IEA go_process response to other organism|GO:0051707||ISS product Pathogenesis-related thaumatin superfamily protein note ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G73620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18250.2p transcript_id AT1G18250.2 protein_id AT1G18250.2p transcript_id AT1G18250.2
At1g18260	chr1:006279047	0.0	C/6279047-6279286,6279391-6279633,6279772-6280095,6280603-6280818,6280908-6281399,6281487-6282008	AT1G18260.1 CDS HCP-like superfamily protein [TAIR10] CDS gene_syn T10O22.22, T10O22_22 go_component membrane|GO:0016020|17432890|IDA go_function binding|GO:0005488||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process biological_process|GO:0008150||ND product HCP-like superfamily protein note HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). protein_id AT1G18260.1p transcript_id AT1G18260.1 protein_id AT1G18260.1p transcript_id AT1G18260.1
At1g18265	chr1:006282338	0.0	C/6282338-6283180	AT1G18265.1 CDS zein-binding protein (Protein of unknown function, DUF593) [TAIR10] CDS go_component membrane|GO:0016020|11152613|ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF593 note Protein of unknown function, DUF593; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT5G16720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18265.1p transcript_id AT1G18265.1 protein_id AT1G18265.1p transcript_id AT1G18265.1
At1g18270	chr1:006283634	0.0	C/6283634-6283816,6283970-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286738-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293060,6293296-6293371,6293677-6293772	AT1G18270.3 CDS ketose-bisphosphate aldolase class-II family protein [TAIR10] CDS gene_syn T10O22.24, T10O22_24 go_process glycolysis|GO:0006096||IEA go_process pentose-phosphate shunt|GO:0006098||IEA go_process valine metabolic process|GO:0006573||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function catalytic activity|GO:0003824||IEA go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_function 3-hydroxyisobutyrate dehydrogenase activity|GO:0008442||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function coenzyme binding|GO:0050662||IEA go_process glycolysis|GO:0006096||ISS go_function fructose-bisphosphate aldolase activity|GO:0004332||ISS product ketose-bisphosphate aldolase class-II family protein note ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), Protein of unknown function, DUF1537 (InterPro:IPR010737), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1). protein_id AT1G18270.3p transcript_id AT1G18270.3 protein_id AT1G18270.3p transcript_id AT1G18270.3
At1g18270	chr1:006283634	0.0	C/6283634-6283816,6283970-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286798-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293060,6293296-6293371,6293677-6293772	AT1G18270.1 CDS ketose-bisphosphate aldolase class-II family protein [TAIR10] CDS gene_syn T10O22.24, T10O22_24 go_component nucleus|GO:0005634|14617066|IDA go_process glycolysis|GO:0006096||IEA go_process pentose-phosphate shunt|GO:0006098||IEA go_process valine metabolic process|GO:0006573||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function catalytic activity|GO:0003824||IEA go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_function 3-hydroxyisobutyrate dehydrogenase activity|GO:0008442||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function coenzyme binding|GO:0050662||IEA go_process glycolysis|GO:0006096||ISS go_function fructose-bisphosphate aldolase activity|GO:0004332||ISS product ketose-bisphosphate aldolase class-II family protein note ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), Protein of unknown function, DUF1537 (InterPro:IPR010737), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1); Has 34046 Blast hits to 22505 proteins in 2700 species: Archae - 264; Bacteria - 21742; Metazoa - 568; Fungi - 820; Plants - 423; Viruses - 1; Other Eukaryotes - 10228 (source: NCBI BLink). protein_id AT1G18270.1p transcript_id AT1G18270.1 protein_id AT1G18270.1p transcript_id AT1G18270.1
At1g18270	chr1:006283634	0.0	C/6283634-6283816,6283970-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286798-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293063,6293296-6293371,6293677-6293772	AT1G18270.2 CDS ketose-bisphosphate aldolase class-II family protein [TAIR10] CDS gene_syn T10O22.24, T10O22_24 go_process glycolysis|GO:0006096||IEA go_process pentose-phosphate shunt|GO:0006098||IEA go_process valine metabolic process|GO:0006573||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function catalytic activity|GO:0003824||IEA go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_function 3-hydroxyisobutyrate dehydrogenase activity|GO:0008442||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function coenzyme binding|GO:0050662||IEA go_process glycolysis|GO:0006096||ISS go_function fructose-bisphosphate aldolase activity|GO:0004332||ISS product ketose-bisphosphate aldolase class-II family protein note ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), Protein of unknown function, DUF1537 (InterPro:IPR010737), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18270.2p transcript_id AT1G18270.2 protein_id AT1G18270.2p transcript_id AT1G18270.2
AT1G18270	chr1:006283964	0.0	C/6283964-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286798-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293060,6293296-6293371,6293677-6293772	AT1G18270.4 AT1G18270.4 CDS ketose-bisphosphate aldolase class-II family protein
At1g18280	chr1:006294403	0.0	W/6294403-6294754,6294875-6294940,6295083-6295207	AT1G18280.1 CDS Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [TAIR10] CDS gene_syn T10O22.25, T10O22_25 go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process lipid transport|GO:0006869||ISS go_function lipid binding|GO:0008289||ISS product Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein note Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G73560.1); Has 517 Blast hits to 515 proteins in 27 species: Archae - 0; Bacteria - 3; Metazoa - 3; Fungi - 0; Plants - 507; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G18280.1p transcript_id AT1G18280.1 protein_id AT1G18280.1p transcript_id AT1G18280.1
At1g18290	chr1:006297436	0.0	W/6297436-6297966	AT1G18290.1 CDS DUF4228 domain protein, putative [TAIR10] CDS gene_syn F15H18.19 go_component chloroplast|GO:0009507||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G18290.1p transcript_id AT1G18290.1 protein_id AT1G18290.1p transcript_id AT1G18290.1
At1g18300	chr1:006299841	0.0	W/6299841-6300031,6300367-6300799	AT1G18300.1 CDS nudix hydrolase homolog 4 [TAIR10] CDS gene_syn F15H18.18, NUDT4, atnudt4, nudix hydrolase homolog 4 gene NUDT4 go_component cytosol|GO:0005829|15878881|RCA go_function hydrolase activity|GO:0016787||IEA go_function hydrolase activity|GO:0016787||ISS product nudix hydrolase homolog 4 note nudix hydrolase homolog 4 (NUDT4); FUNCTIONS IN: hydrolase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, root, leaf; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 21 (TAIR:AT1G73540.1); Has 1264 Blast hits to 1263 proteins in 383 species: Archae - 1; Bacteria - 506; Metazoa - 249; Fungi - 131; Plants - 237; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). protein_id AT1G18300.1p transcript_id AT1G18300.1 protein_id AT1G18300.1p transcript_id AT1G18300.1
At1g18310	chr1:006301200	0.0	C/6301200-6301385,6301423-6301578,6301783-6302669,6303165-6303490,6303562-6303956	AT1G18310.1 CDS glycosyl hydrolase family 81 protein [TAIR10] CDS gene_syn F15H18.17, F15H18_17 go_process cell wall macromolecule catabolic process|GO:0016998||IEA go_function endo-1,3(4)-beta-glucanase activity|GO:0033903||IEA go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS product glycosyl hydrolase family 81 protein note glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: cell wall macromolecule catabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT5G15870.1); Has 441 Blast hits to 435 proteins in 142 species: Archae - 0; Bacteria - 86; Metazoa - 4; Fungi - 179; Plants - 58; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). protein_id AT1G18310.1p transcript_id AT1G18310.1 protein_id AT1G18310.1p transcript_id AT1G18310.1
At1g18320	chr1:006304472	0.0	W/6304472-6304550,6304916-6305106,6305217-6305289,6305446-6305531	AT1G18320.1 CDS Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [TAIR10] CDS gene_syn F15H18.28, F15H18_28 go_component mitochondrial inner membrane|GO:0005743||IEA go_process protein transport|GO:0015031||IEA go_function protein transporter activity|GO:0008565||IEA go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS go_process protein transport|GO:0015031||ISS go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS product Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein note Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT3G10110.1); Has 671 Blast hits to 671 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 261; Fungi - 229; Plants - 123; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). protein_id AT1G18320.1p transcript_id AT1G18320.1 protein_id AT1G18320.1p transcript_id AT1G18320.1
At1g18330	chr1:006306196	0.0	C/6306196-6306945,6307028-6307089,6307180-6307291,6307383-6307487,6307629-6307640	AT1G18330.1 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn EARLY-PHYTOCHROME-RESPONSIVE1, EPR1, F15H18.16, F15H18_16, REVEILLE 7, RVE7 gene EPR1 function EARLY-PHYTOCHROME-RESPONSIVE1 go_process circadian rhythm|GO:0007623|19805390|IEP go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Homeodomain-like superfamily protein note EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10113.1); Has 1461 Blast hits to 1443 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 30; Plants - 1113; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink). protein_id AT1G18330.1p transcript_id AT1G18330.1 protein_id AT1G18330.1p transcript_id AT1G18330.1
At1g18330	chr1:006306196	0.0	C/6306196-6306945,6307028-6307089,6307180-6307291,6307383-6307487,6307629-6307718	AT1G18330.2 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn EARLY-PHYTOCHROME-RESPONSIVE1, EPR1, F15H18.16, F15H18_16, REVEILLE 7, RVE7 gene EPR1 function EARLY-PHYTOCHROME-RESPONSIVE1 go_process circadian rhythm|GO:0007623|19805390|IEP go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Homeodomain-like superfamily protein note EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10113.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18330.2p transcript_id AT1G18330.2 protein_id AT1G18330.2p transcript_id AT1G18330.2
At1g18335	chr1:006309428	0.0	C/6309428-6309454,6309588-6309653,6309736-6309778,6309961-6310037,6310154-6310462,6310563-6310642,6311022-6311124,6311222-6311326	AT1G18335.1 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein [TAIR10] CDS go_process metabolic process|GO:0008152||IEA go_function N-acetyltransferase activity|GO:0008080||IEA go_component cellular_component|GO:0005575||ND go_process metabolic process|GO:0008152||ISS go_function N-acetyltransferase activity|GO:0008080||ISS product Acyl-CoA N-acyltransferases (NAT) superfamily protein note Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18335.1p transcript_id AT1G18335.1 protein_id AT1G18335.1p transcript_id AT1G18335.1
AT1G18335	chr1:006309537	0.0	C/6309537-6309653,6309736-6309778,6309961-6310037,6310154-6310462,6310563-6310642,6311022-6311124,6311222-6311326	AT1G18335.2 AT1G18335.2 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein
AT1G18335	chr1:006309537	0.0	C/6309537-6309653,6309736-6309778,6309961-6310037,6310154-6310462,6310563-6310642,6311022-6311124,6311222-6311326	AT1G18335.3 AT1G18335.3 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein
At1g18340	chr1:006311612	0.0	C/6311612-6311687,6311779-6311874,6311959-6312035,6312143-6312211,6312296-6312349,6312449-6312494,6312581-6312618,6312812-6312858,6313128-6313410,6313492-6313580,6313704-6313734	AT1G18340.1 CDS basal transcription factor complex subunit-related [TAIR10] CDS gene_syn F15H18.15, F15H18_15 go_component core TFIIH complex|GO:0000439||IEA go_process DNA repair|GO:0006281||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function general RNA polymerase II transcription factor activity|GO:0016251||IEA product basal transcription factor complex subunit-related note basal transcription factor complex subunit-related; FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: core TFIIH complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb4 (InterPro:IPR004600); Has 359 Blast hits to 354 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 143; Plants - 47; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). protein_id AT1G18340.1p transcript_id AT1G18340.1 protein_id AT1G18340.1p transcript_id AT1G18340.1
At1g18350	chr1:006315686	0.0	W/6315686-6316609	AT1G18350.1 CDS MAP kinase kinase 7 [TAIR10] CDS gene_syn ATMKK7, BUD1, BUSHY AND DWARF 1, F15H18.14, F15H18_14, MAP KINASE KINASE7, MAP kinase kinase 7, MKK7 gene MKK7 function MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance. go_process defense response to oomycetes|GO:0002229|17908155|IMP go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|17908155|IMP go_process auxin polar transport|GO:0009926|16377756|IMP go_process defense response to bacterium|GO:0042742|17908155|IMP go_function MAP kinase kinase activity|GO:0004708|11875555|TAS go_function kinase activity|GO:0016301|16377756|IDA go_function kinase activity|GO:0016301||ISS product MAP kinase kinase 7 note MAP kinase kinase 7 (MKK7); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAP kinase kinase 9 (TAIR:AT1G73500.1); Has 127926 Blast hits to 126631 proteins in 4862 species: Archae - 158; Bacteria - 14837; Metazoa - 47772; Fungi - 12215; Plants - 31900; Viruses - 488; Other Eukaryotes - 20556 (source: NCBI BLink). protein_id AT1G18350.1p transcript_id AT1G18350.1 protein_id AT1G18350.1p transcript_id AT1G18350.1
At1g18360	chr1:006316996	0.0	C/6316996-6317397,6317487-6317579,6317654-6317743,6317839-6317903,6318004-6318074,6318158-6318196,6318816-6319204	AT1G18360.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F15H18.13, F15H18_13 go_component chloroplast|GO:0009507||IEA go_function hydrolase activity|GO:0016787||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73480.1); Has 6456 Blast hits to 6448 proteins in 1759 species: Archae - 38; Bacteria - 4736; Metazoa - 147; Fungi - 149; Plants - 444; Viruses - 63; Other Eukaryotes - 879 (source: NCBI BLink). protein_id AT1G18360.1p transcript_id AT1G18360.1 protein_id AT1G18360.1p transcript_id AT1G18360.1
At1g18370	chr1:006319732	0.0	C/6319732-6320059,6320144-6320472,6320551-6321522,6321615-6321716,6321802-6321912,6322005-6322203,6322302-6322426,6322527-6322586,6322672-6322739,6322833-6322914,6323019-6323135,6323226-6323326,6323406-6323495,6323580-6323820	AT1G18370.1 CDS ATP binding microtubule motor family protein [TAIR10] CDS gene_syn ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATNACK1, F15H18.12, F15H18_12, HIK, HINKEL, NACK1, NPK1-ACTIVATING KINESIN 1 gene HIK function Encodes a kinesin HINKEL. Required for cytokinesis in pollen. Mutant has cytokinesis defects; seedling lethal. go_component chloroplast|GO:0009507||IEA go_function microtubule motor activity|GO:0003777||IEA go_function ATP binding|GO:0005524||IEA go_process cytokinesis|GO:0000910|19825582|IGI go_process pollen development|GO:0009555|19825582|IGI go_process cellularization of the embryo sac|GO:0009558|15569152|IGI go_process response to cyclopentenone|GO:0010583|18334669|IEP go_process gametophyte development|GO:0048229|15569152|IGI go_function microtubule motor activity|GO:0003777||ISS product ATP binding microtubule motor family protein note HINKEL (HIK); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: response to cyclopentenone, cellularization of the embryo sac, gametophyte development, pollen development, cytokinesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G43210.1); Has 14045 Blast hits to 12964 proteins in 525 species: Archae - 35; Bacteria - 375; Metazoa - 6535; Fungi - 1633; Plants - 1984; Viruses - 5; Other Eukaryotes - 3478 (source: NCBI BLink). protein_id AT1G18370.1p transcript_id AT1G18370.1 protein_id AT1G18370.1p transcript_id AT1G18370.1
At1g18390	chr1:006325876	0.0	W/6325876-6326623,6328429-6328473,6328682-6329319,6329420-6329935	AT1G18390.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F15H18.25, F15H18_25 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1); Has 21064 Blast hits to 20752 proteins in 1151 species: Archae - 24; Bacteria - 3918; Metazoa - 5271; Fungi - 1719; Plants - 7999; Viruses - 19; Other Eukaryotes - 2114 (source: NCBI BLink). protein_id AT1G18390.1p transcript_id AT1G18390.1 protein_id AT1G18390.1p transcript_id AT1G18390.1
At1g18382	chr1:006326366	0.0	C/6326366-6326600,6326676-6326699	AT1G18382.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G18380 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G18382.1
At1g18390	chr1:006327463	0.0	W/6327463-6328219,6328429-6328463,6328663-6329319,6329420-6329935	AT1G18390.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F15H18.25, F15H18_25 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1); Has 128125 Blast hits to 126473 proteins in 4812 species: Archae - 110; Bacteria - 14433; Metazoa - 47787; Fungi - 10757; Plants - 35416; Viruses - 568; Other Eukaryotes - 19054 (source: NCBI BLink). protein_id AT1G18390.2p transcript_id AT1G18390.2 protein_id AT1G18390.2p transcript_id AT1G18390.2
AT1G18390	chr1:006327463	0.0	W/6327463-6328219,6328429-6328473,6328682-6329319,6329420-6329935	AT1G18390.3 AT1G18390.3 CDS Protein kinase superfamily protein
At1g18400	chr1:006331464	0.0	W/6331464-6331820,6331924-6332049,6332151-6332216,6332647-6332715,6333000-6333077,6333490-6333576	AT1G18400.1 CDS BR enhanced expression 1 [TAIR10] CDS gene_syn BEE1, BR enhanced expression 1, F15H18.11, F15H18_11 gene BEE1 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product BR enhanced expression 1 note BR enhanced expression 1 (BEE1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BR enhanced expression 3 (TAIR:AT1G73830.1); Has 2046 Blast hits to 2038 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 35; Plants - 1999; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G18400.1p transcript_id AT1G18400.1 protein_id AT1G18400.1p transcript_id AT1G18400.1
AT1G18400	chr1:006331464	0.0	W/6331464-6331820,6331924-6332049,6332151-6332216,6332647-6332715,6333000-6333119	AT1G18400.2 AT1G18400.2 CDS BR enhanced expression 1
AT1G18410	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337237,6337344-6337507,6337589-6337842,6337964-6338123,6338281-6338440,6338525-6338631,6338752-6338931,6339012-6339103,6339207-6339292,6339369-6340088,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341256	AT1G18410.5 AT1G18410.5 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g18410	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337252,6337344-6337507,6337589-6337842,6337964-6338123,6338281-6338440,6338525-6338631,6338752-6338931,6339012-6339103,6339207-6339292,6339369-6340088,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341228,6341540-6341600,6341665-6341730,6342101-6342460	AT1G18410.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F15H18.10, F15H18_10 go_process microtubule-based movement|GO:0007018||IEA go_function microtubule motor activity|GO:0003777||IEA go_function ATP binding|GO:0005524||IEA go_function microtubule motor activity|GO:0003777||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73860.1); Has 112609 Blast hits to 62495 proteins in 2699 species: Archae - 1262; Bacteria - 14877; Metazoa - 53219; Fungi - 10109; Plants - 7005; Viruses - 364; Other Eukaryotes - 25773 (source: NCBI BLink). protein_id AT1G18410.1p transcript_id AT1G18410.1 protein_id AT1G18410.1p transcript_id AT1G18410.1
AT1G18410	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337252,6337344-6337507,6337589-6337842,6337964-6338128,6338262-6338440,6338525-6338631,6338752-6338931,6339012-6339107,6339211-6339292,6339369-6340088,6340196-6340225,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341256	AT1G18410.2 AT1G18410.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G18410	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337252,6337344-6337507,6337589-6337842,6337964-6338128,6338262-6338440,6338525-6338631,6338752-6338931,6339012-6339107,6339211-6339292,6339369-6340088,6340196-6340225,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341256	AT1G18410.3 AT1G18410.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G18410	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337252,6337344-6337507,6337589-6337842,6337964-6338128,6338262-6338440,6338525-6338631,6338752-6338931,6339012-6339107,6339211-6339292,6339369-6340088,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341228,6341540-6341600,6341665-6341730,6342101-6342460	AT1G18410.4 AT1G18410.4 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g18415	chr1:006343096	0.0	C/6343096-6343851,6343950-6344692,6344785-6345051,6345240-6345662	AT1G18415.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G18420 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G18415.1
At1g18420	chr1:006343330	0.0	W/6343330-6343511,6343666-6343895,6343983-6344120,6344215-6344484,6344576-6344715,6344817-6344963,6345051-6345689	AT1G18420.1 CDS Aluminium activated malate transporter family protein [TAIR10] CDS gene_syn F15H18.9, F15H18_9 go_process response to aluminum ion|GO:0010044||IEA product Aluminium activated malate transporter family protein note Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 9 (TAIR:AT3G18440.1); Has 539 Blast hits to 535 proteins in 118 species: Archae - 0; Bacteria - 174; Metazoa - 1; Fungi - 11; Plants - 341; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G18420.1p transcript_id AT1G18420.1 protein_id AT1G18420.1p transcript_id AT1G18420.1
AT1G18420	chr1:006343733	0.0	W/6343733-6343895,6343983-6344120,6344215-6344484,6344576-6344715,6344817-6344963,6345051-6345689	AT1G18420.2 AT1G18420.2 CDS Aluminium activated malate transporter family protein
At1g18430	chr1:006345764	0.0	W/6345764-6345835	AT1G18430.1 [TAIR10] tRNA gene_syn 51768.TRNA-ASP-1 go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Asp (anticodon: GTC) transcript_id AT1G18430.1
At1g18440	chr1:006345994	0.0	W/6345994-6346332,6346403-6346487,6346709-6346776,6346890-6346940,6347026-6347099,6347279-6347337,6347421-6347497,6347573-6347686	AT1G18440.1 CDS Peptidyl-tRNA hydrolase family protein [TAIR10] CDS gene_syn F15H18.24, F15H18_24 go_component chloroplast|GO:0009507|18431481|IDA go_process translation|GO:0006412||IEA go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA go_process translation|GO:0006412||ISS go_function aminoacyl-tRNA hydrolase activity|GO:0004045||ISS product Peptidyl-tRNA hydrolase family protein note Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 8043 Blast hits to 8040 proteins in 2597 species: Archae - 0; Bacteria - 5299; Metazoa - 47; Fungi - 102; Plants - 126; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink). protein_id AT1G18440.1p transcript_id AT1G18440.1 protein_id AT1G18440.1p transcript_id AT1G18440.1
AT1G18440	chr1:006345994	0.0	W/6345994-6346332,6346403-6346487,6346709-6346776,6346890-6346940,6347026-6347154	AT1G18440.2 AT1G18440.2 CDS Peptidyl-tRNA hydrolase family protein
At1g18450	chr1:006348199	0.0	W/6348199-6348211,6348301-6348392,6348508-6348672,6348750-6348823,6348899-6348979,6349070-6349130,6349268-6349317,6349460-6349514,6349720-6349797,6349875-6349928,6350003-6350056,6350126-6350186,6350342-6350393,6350742-6350808,6350934-6350996,6351081-6351143,6351240-6351302,6351398-6351462,6351551-6351619,6351721-6351766	AT1G18450.1 CDS actin-related protein 4 [TAIR10] CDS gene_syn ARP4, ATARP4, F15H18.8, F15H18_8, actin-related protein 4 gene ARP4 function Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes. go_component nucleolus|GO:0005730|15496452|IDA go_component nucleus|GO:0005634|12609034|IDA go_process chromatin organization|GO:0006325|12609034|TAS go_process pollen sperm cell differentiation|GO:0048235|15743449|IMP go_process long-day photoperiodism, flowering|GO:0048574|15743449|IMP go_function structural constituent of cytoskeleton|GO:0005200|11891255|ISS go_function structural constituent of cytoskeleton|GO:0005200||ISS product actin-related protein 4 note actin-related protein 4 (ARP4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: long-day photoperiodism, flowering, chromatin organization, pollen sperm cell differentiation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 13669 Blast hits to 13362 proteins in 2792 species: Archae - 2; Bacteria - 480; Metazoa - 5593; Fungi - 3430; Plants - 1457; Viruses - 2; Other Eukaryotes - 2705 (source: NCBI BLink). protein_id AT1G18450.1p transcript_id AT1G18450.1 protein_id AT1G18450.1p transcript_id AT1G18450.1
At1g18460	chr1:006352682	0.0	W/6352682-6352722,6353292-6353465,6353554-6353959,6354039-6354322,6354429-6354497,6354588-6354644,6354725-6354777,6354870-6354945,6355026-6355971	AT1G18460.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F15H18.6, F15H18_6 go_process glycerol biosynthetic process|GO:0006114||IEA go_process lipid metabolic process|GO:0006629||IEA go_function lipase activity|GO:0016298||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: lipase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AB-hydrolase-associated lipase region (InterPro:IPR006693); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73920.1); Has 1698 Blast hits to 1679 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1170; Fungi - 262; Plants - 165; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). protein_id AT1G18460.1p transcript_id AT1G18460.1 protein_id AT1G18460.1p transcript_id AT1G18460.1
At1g18470	chr1:006356407	0.0	C/6356407-6356485,6356676-6356755,6356855-6356935,6357080-6357149,6357237-6357311,6357402-6357607,6357685-6357934,6358046-6358091,6358232-6358301,6358626-6358695,6358782-6358866,6359159-6359243,6359344-6359434,6359942-6360057	AT1G18470.1 CDS Transmembrane Fragile-X-F-associated protein [TAIR10] CDS gene_syn F15H18.5, F15H18_5 go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product Transmembrane Fragile-X-F-associated protein note Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 2617 Blast hits to 2612 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 1517; Fungi - 24; Plants - 500; Viruses - 234; Other Eukaryotes - 342 (source: NCBI BLink). protein_id AT1G18470.1p transcript_id AT1G18470.1 protein_id AT1G18470.1p transcript_id AT1G18470.1
At1g18470	chr1:006356972	0.0	C/6356972-6357149,6357237-6357311,6357402-6357607,6357685-6357934,6358046-6358091,6358232-6358301,6358626-6358695,6358782-6358866,6359159-6359243,6359344-6359434,6359942-6360057	AT1G18470.2 CDS Transmembrane Fragile-X-F-associated protein [TAIR10] CDS gene_syn F15H18.5, F15H18_5 go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||ISS product Transmembrane Fragile-X-F-associated protein note Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18470.2p transcript_id AT1G18470.2 protein_id AT1G18470.2p transcript_id AT1G18470.2
At1g18480	chr1:006361639	0.0	W/6361639-6362814	AT1G18480.1 CDS Calcineurin-like metallo-phosphoesterase superfamily protein [TAIR10] CDS gene_syn F15H18.29 go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Calcineurin-like metallo-phosphoesterase superfamily protein note Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G07010.1); Has 638 Blast hits to 634 proteins in 194 species: Archae - 15; Bacteria - 274; Metazoa - 0; Fungi - 21; Plants - 102; Viruses - 3; Other Eukaryotes - 223 (source: NCBI BLink). protein_id AT1G18480.1p transcript_id AT1G18480.1 protein_id AT1G18480.1p transcript_id AT1G18480.1
At1g18485	chr1:006363172	0.0	W/6363172-6366084	AT1G18485.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 47794 Blast hits to 13382 proteins in 245 species: Archae - 0; Bacteria - 5; Metazoa - 44; Fungi - 66; Plants - 47218; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink). protein_id AT1G18485.1p transcript_id AT1G18485.1 protein_id AT1G18485.1p transcript_id AT1G18485.1
At1g18486	chr1:006366397	0.0	W/6366397-6366753	AT1G18486.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02655.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18486.1p transcript_id AT1G18486.1 protein_id AT1G18486.1p transcript_id AT1G18486.1
At1g18490	chr1:006367116	0.0	W/6367116-6367311,6367735-6367886,6367971-6368139,6368218-6368418,6368510-6368640	AT1G18490.1 CDS 2-aminoethanethiol dioxygenase, putative (DUF1637) [TAIR10] CDS gene_syn F15H18.26, F15H18_26 go_process oxidation reduction|GO:0055114||IEA go_function cysteamine dioxygenase activity|GO:0047800||IEA go_component cellular_component|GO:0005575||ND product Protein of unknown function (DUF1637) note Protein of unknown function (DUF1637); FUNCTIONS IN: cysteamine dioxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G39890.1); Has 360 Blast hits to 360 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). protein_id AT1G18490.1p transcript_id AT1G18490.1 protein_id AT1G18490.1p transcript_id AT1G18490.1
At1g18500	chr1:006369347	0.0	W/6369347-6370059,6370150-6370363,6370463-6370543,6370888-6370980,6371099-6371185,6371289-6371389,6371612-6371645,6371733-6371807,6372069-6372152,6372243-6372377,6372462-6372607,6372729-6372861	AT1G18500.1 CDS methylthioalkylmalate synthase-like 4 [TAIR10] CDS gene_syn F15H18.3, F15H18_3, IPMS1, ISOPROPYLMALATE SYNTHASE 1, MAML-4, methylthioalkylmalate synthase-like 4 gene MAML-4 function Encodes an active Arabidopsis isopropylmalate synthase IPMS1. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS1 can be compensated by a second isopropylmalate synthase gene IPMS2 (At1g74040). go_component chloroplast|GO:0009507|18431481|IDA go_process leucine biosynthetic process|GO:0009098|17189332|IDA go_function 2-isopropylmalate synthase activity|GO:0003852|17189332|IDA product methylthioalkylmalate synthase-like 4 note methylthioalkylmalate synthase-like 4 (MAML-4); FUNCTIONS IN: 2-isopropylmalate synthase activity; INVOLVED IN: leucine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain (InterPro:IPR013709), Pyruvate carboxyltransferase (InterPro:IPR000891), Bacterial 2-isopropylmalate synthase (InterPro:IPR005671); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 1 (TAIR:AT1G74040.1); Has 16947 Blast hits to 16939 proteins in 2437 species: Archae - 505; Bacteria - 8907; Metazoa - 233; Fungi - 482; Plants - 265; Viruses - 0; Other Eukaryotes - 6555 (source: NCBI BLink). protein_id AT1G18500.1p transcript_id AT1G18500.1 protein_id AT1G18500.1p transcript_id AT1G18500.1
At1g18510	chr1:006373265	0.0	W/6373265-6373711,6373791-6374087	AT1G18510.1 CDS tetraspanin [TAIR10] CDS gene_syn F15H18.2, F15H18_2, TET16, tetraspanin 16 gene TET16 function Member of TETRASPANIN family go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product tetraspanin 16 note tetraspanin 16 (TET16); BEST Arabidopsis thaliana protein match is: tetraspanin 17 (TAIR:AT1G74045.1); Has 136 Blast hits to 136 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G18510.1p transcript_id AT1G18510.1 protein_id AT1G18510.1p transcript_id AT1G18510.1
At1g18520	chr1:006375051	0.0	W/6375051-6375557,6375870-6376178	AT1G18520.1 CDS tetraspanin11 [TAIR10] CDS gene_syn F15H18.1, F15H18_1, TET11, tetraspanin11 gene TET11 function Member of TETRASPANIN family go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process aging|GO:0007568||ISS go_function molecular_function|GO:0003674||ND product tetraspanin11 note tetraspanin11 (TET11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin8 (TAIR:AT2G23810.1); Has 423 Blast hits to 421 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 419; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G18520.1p transcript_id AT1G18520.1 protein_id AT1G18520.1p transcript_id AT1G18520.1
At1g18530	chr1:006376783	0.0	W/6376783-6377256	AT1G18530.1 CDS EF hand calcium-binding protein family [TAIR10] CDS gene_syn F25I16.13, F25I16_13 go_function calcium ion binding|GO:0005509||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product EF hand calcium-binding protein family note EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G25600.1); Has 21367 Blast hits to 15094 proteins in 1525 species: Archae - 2; Bacteria - 175; Metazoa - 8057; Fungi - 4921; Plants - 4996; Viruses - 2; Other Eukaryotes - 3214 (source: NCBI BLink). protein_id AT1G18530.1p transcript_id AT1G18530.1 protein_id AT1G18530.1p transcript_id AT1G18530.1
At1g18540	chr1:006377448	0.0	C/6377448-6377603,6377706-6377887,6377976-6378082,6378292-6378548	AT1G18540.1 CDS Ribosomal protein L6 family protein [TAIR10] CDS gene_syn F25I16.12, F25I16_12 go_component plasma membrane|GO:0005886|15060130|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component intracellular|GO:0005622||ISS go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L6 family protein note Ribosomal protein L6 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6, N-terminal (InterPro:IPR005568), Ribosomal protein L6E (InterPro:IPR000915); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family protein (TAIR:AT1G74050.1); Has 758 Blast hits to 758 proteins in 286 species: Archae - 33; Bacteria - 0; Metazoa - 332; Fungi - 149; Plants - 117; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). protein_id AT1G18540.1p transcript_id AT1G18540.1 protein_id AT1G18540.1p transcript_id AT1G18540.1
At1g18550	chr1:006381656	0.0	C/6381656-6381688,6381804-6382862,6382970-6383062,6383155-6383205,6383312-6383585,6383673-6384340	AT1G18550.1 CDS ATP binding microtubule motor family protein [TAIR10] CDS gene_syn F25I16.11, F25I16_11 go_process microtubule-based movement|GO:0007018||IEA go_function microtubule motor activity|GO:0003777||IEA go_function ATP binding|GO:0005524||IEA go_function microtubule motor activity|GO:0003777||ISS product ATP binding microtubule motor family protein note ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G49650.1); Has 10638 Blast hits to 10129 proteins in 307 species: Archae - 0; Bacteria - 6; Metazoa - 4775; Fungi - 1386; Plants - 1857; Viruses - 0; Other Eukaryotes - 2614 (source: NCBI BLink). protein_id AT1G18550.1p transcript_id AT1G18550.1 protein_id AT1G18550.1p transcript_id AT1G18550.1
At1g18560	chr1:006385614	0.0	W/6385614-6385653,6385803-6386018,6386113-6386993,6387070-6388005	AT1G18560.1 CDS BED zinc finger and hAT dimerization domain-containing protein [TAIR10] CDS gene_syn F25I16.10, F25I16_10 go_function DNA binding|GO:0003677||IEA go_function protein dimerization activity|GO:0046983||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function DNA binding|GO:0003677||ISS product BED zinc finger ;hAT family dimerisation domain note BED zinc finger ;hAT family dimerisation domain; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT3G42170.1); Has 1077 Blast hits to 1005 proteins in 94 species: Archae - 0; Bacteria - 2; Metazoa - 242; Fungi - 210; Plants - 602; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G18560.1p transcript_id AT1G18560.1 protein_id AT1G18560.1p transcript_id AT1G18560.1
At1g18570	chr1:006389765	0.0	W/6389765-6389900,6390015-6390144,6390234-6391026	AT1G18570.1 CDS myb domain protein 51 [TAIR10] CDS gene_syn AtMYB51, BW51A, BW51B, F25I16.9, F25I16_9, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 gene MYB51 function Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis. go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process indole glucosinolate biosynthetic process|GO:0009759|17461791|IMP go_process defense response to bacterium|GO:0042742|19095898|IMP go_process defense response by callose deposition in cell wall|GO:0052544|19095898|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb domain protein 51 note myb domain protein 51 (MYB51); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 122 (TAIR:AT1G74080.1); Has 9055 Blast hits to 8387 proteins in 480 species: Archae - 0; Bacteria - 2; Metazoa - 725; Fungi - 509; Plants - 5977; Viruses - 4; Other Eukaryotes - 1838 (source: NCBI BLink). protein_id AT1G18570.1p transcript_id AT1G18570.1 protein_id AT1G18570.1p transcript_id AT1G18570.1
At1g18580	chr1:006396144	0.0	W/6396144-6396296,6396545-6398005	AT1G18580.1 CDS galacturonosyltransferase 11 [TAIR10] CDS gene_syn F25I16.8, F25I16_8, GAUT11, galacturonosyltransferase 11 gene GAUT11 function Encodes a protein with putative galacturonosyltransferase activity. go_component mitochondrion|GO:0005739||IEA go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS product galacturonosyltransferase 11 note galacturonosyltransferase 11 (GAUT11); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 10 (TAIR:AT2G20810.1); Has 1461 Blast hits to 1453 proteins in 263 species: Archae - 0; Bacteria - 484; Metazoa - 143; Fungi - 0; Plants - 819; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). protein_id AT1G18580.1p transcript_id AT1G18580.1 protein_id AT1G18580.1p transcript_id AT1G18580.1
At1g18590	chr1:006398634	0.0	W/6398634-6399674	AT1G18590.1 CDS sulfotransferase 17 [TAIR10] CDS gene_syn ARABIDOPSIS SULFOTRANSFERASE 5C, ATSOT17, ATST5C, F25I16.7, F25I16_7, SOT17, SULFOTRANSFERASE 17, sulfotransferase 17 gene SOT17 function encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates. go_component cellular_component|GO:0005575||ND go_process glucosinolate biosynthetic process|GO:0019761|15358770|IDA go_function sulfotransferase activity|GO:0008146||ISS go_function desulfoglucosinolate sulfotransferase activity|GO:0047364|15358770|IDA product sulfotransferase 17 note sulfotransferase 17 (SOT17); CONTAINS InterPro DOMAIN/s: Sulfotransferase domain (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: desulfo-glucosinolate sulfotransferase 18 (TAIR:AT1G74090.1); Has 2933 Blast hits to 2889 proteins in 198 species: Archae - 0; Bacteria - 241; Metazoa - 1692; Fungi - 1; Plants - 541; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink). protein_id AT1G18590.1p transcript_id AT1G18590.1 protein_id AT1G18590.1p transcript_id AT1G18590.1
At1g18600	chr1:006400647	0.0	W/6400647-6401014,6401122-6401242,6401387-6401506,6401657-6401770,6401927-6401971,6402159-6402263,6402353-6402394,6402492-6402587	AT1G18600.1 CDS RHOMBOID-like protein 12 [TAIR10] CDS gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, ATRBL12, F25I16.6, F25I16_6, RBL12, RHOMBOID-like protein 12 gene RBL12 function Mitochondrion-located rhomboid-like protein go_function serine-type endopeptidase activity|GO:0004252||IEA go_component mitochondrion|GO:0005739|18543065|IDA go_process biological_process|GO:0008150||ND product RHOMBOID-like protein 12 note RHOMBOID-like protein 12 (RBL12); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 3270 Blast hits to 3270 proteins in 960 species: Archae - 107; Bacteria - 1998; Metazoa - 110; Fungi - 132; Plants - 58; Viruses - 0; Other Eukaryotes - 865 (source: NCBI BLink). protein_id AT1G18600.1p transcript_id AT1G18600.1 protein_id AT1G18600.1p transcript_id AT1G18600.1
At1g18610	chr1:006405779	0.0	W/6405779-6405959,6406282-6406431,6406525-6406692,6406907-6407059,6407155-6407307,6407562-6407726,6407829-6407969,6408080-6408266,6408349-6408595,6408706-6408831	AT1G18610.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F25I16.5, F25I16_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G74150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18610.1p transcript_id AT1G18610.1 protein_id AT1G18610.1p transcript_id AT1G18610.1
AT1G18610	chr1:006405779	0.0	W/6405779-6405959,6406282-6406431,6406525-6406692,6406907-6407059,6407155-6407307,6407562-6407726,6407829-6407969,6408080-6408266,6408349-6408595,6408706-6408831	AT1G18610.2 AT1G18610.2 CDS Galactose oxidase/kelch repeat superfamily protein
At1g18620	chr1:006410191	0.0	W/6410191-6410216,6410558-6410690,6410770-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.2 CDS LONGIFOLIA protein [TAIR10] CDS gene_syn F25I16.3, F25I16_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1906 Blast hits to 1265 proteins in 203 species: Archae - 0; Bacteria - 130; Metazoa - 671; Fungi - 139; Plants - 265; Viruses - 11; Other Eukaryotes - 690 (source: NCBI BLink). protein_id AT1G18620.2p transcript_id AT1G18620.2 protein_id AT1G18620.2p transcript_id AT1G18620.2
At1g18620	chr1:006410719	0.0	W/6410719-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.1 CDS LONGIFOLIA protein [TAIR10] CDS gene_syn F25I16.3, F25I16_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes - 724 (source: NCBI BLink). protein_id AT1G18620.1p transcript_id AT1G18620.1 protein_id AT1G18620.1p transcript_id AT1G18620.1
AT1G18620	chr1:006410719	0.0	W/6410719-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.3 AT1G18620.3 CDS LONGIFOLIA protein
AT1G18620	chr1:006410719	0.0	W/6410719-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.4 AT1G18620.4 CDS LONGIFOLIA protein
AT1G18620	chr1:006411538	0.0	W/6411538-6413109,6413237-6413360,6413443-6414269	AT1G18620.5 AT1G18620.5 CDS LONGIFOLIA protein
At1g18630	chr1:006415226	0.0	W/6415226-6415349,6415473-6415541,6415625-6415731,6416116-6416283	AT1G18630.1 CDS glycine-rich RNA-binding protein 6 [TAIR10] CDS gene_syn F25I16.4, F25I16_4, GR-RBP6, glycine-rich RNA-binding protein 6 gene GR-RBP6 function encodes a glycine-rich RNA binding protein. go_component mitochondrion|GO:0005739||IEA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product glycine-rich RNA-binding protein 6 note glycine-rich RNA-binding protein 6 (GR-RBP6); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes - 724 (source: NCBI BLink). protein_id AT1G18630.1p transcript_id AT1G18630.1 protein_id AT1G18630.1p transcript_id AT1G18630.1
At1g18640	chr1:006416524	0.0	C/6416524-6416649,6416733-6416786,6416872-6417021,6417141-6417234,6417502-6417609,6417702-6417834,6418023-6418245	AT1G18640.2 CDS 3-phosphoserine phosphatase [TAIR10] CDS gene_syn 3-PHOSPHOSERINE PHOSPHATASE, 3-phosphoserine phosphatase, PSP gene PSP function Encodes a 3-phosphoserine phosphatase acting in the last step of serine biosynthesis within the chloroplast. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast|GO:0009507|10196182|IDA go_process L-serine biosynthetic process|GO:0006564|10196182|TAS go_function phosphoserine phosphatase activity|GO:0004647|10196182|IDA product 3-phosphoserine phosphatase note 3-phosphoserine phosphatase (PSP); FUNCTIONS IN: phosphoserine phosphatase activity; INVOLVED IN: L-serine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Phosphoserine phosphatase SerB (InterPro:IPR004469), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18640.2p transcript_id AT1G18640.2 protein_id AT1G18640.2p transcript_id AT1G18640.2
AT1G18640	chr1:006416740	0.0	C/6416740-6417021,6417141-6417234,6417502-6417609,6417702-6417834,6418023-6418245	AT1G18640.3 AT1G18640.3 CDS 3-phosphoserine phosphatase
At1g18650	chr1:006419036	0.0	C/6419036-6419264,6419426-6419459,6419779-6420018,6420362-6420413	AT1G18650.1 CDS plasmodesmata callose-binding protein 3 [TAIR10] CDS gene_syn F25I16.1, F25I16_1, PDCB3, plasmodesmata callose-binding protein 3 gene PDCB3 function Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose. go_component plasmodesma|GO:0009506|19223515|IDA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND go_function polysaccharide binding|GO:0030247|19223515|ISS go_function callose binding|GO:0080087|19223515|ISS product plasmodesmata callose-binding protein 3 note plasmodesmata callose-binding protein 3 (PDCB3); CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1); Has 1473 Blast hits to 1425 proteins in 72 species: Archae - 4; Bacteria - 6; Metazoa - 5; Fungi - 46; Plants - 1391; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G18650.1p transcript_id AT1G18650.1 protein_id AT1G18650.1p transcript_id AT1G18650.1
AT1G18650	chr1:006419356	0.0	C/6419356-6419459,6419779-6420018,6420362-6420413	AT1G18650.2 AT1G18650.2 CDS plasmodesmata callose-binding protein 3
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.1 CDS zinc finger (C3HC4-type RING finger) family protein [TAIR10] CDS gene_syn F6A14.25, F6A14_25 go_process proteolysis|GO:0006508||IEA go_function ATP-dependent peptidase activity|GO:0004176||IEA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product zinc finger (C3HC4-type RING finger) family protein note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10; Bacteria - 754; Metazoa - 7268; Fungi - 935; Plants - 1517; Viruses - 81; Other Eukaryotes - 1755 (source: NCBI BLink). protein_id AT1G18660.1p transcript_id AT1G18660.1 protein_id AT1G18660.1p transcript_id AT1G18660.1
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.2 CDS zinc finger (C3HC4-type RING finger) family protein [TAIR10] CDS gene_syn F6A14.25, F6A14_25 go_process proteolysis|GO:0006508||IEA go_function ATP-dependent peptidase activity|GO:0004176||IEA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product zinc finger (C3HC4-type RING finger) family protein note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10; Bacteria - 754; Metazoa - 7268; Fungi - 935; Plants - 1517; Viruses - 81; Other Eukaryotes - 1755 (source: NCBI BLink). protein_id AT1G18660.2p transcript_id AT1G18660.2 protein_id AT1G18660.2p transcript_id AT1G18660.2
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.3 CDS zinc finger (C3HC4-type RING finger) family protein [TAIR10] CDS gene_syn F6A14.25, F6A14_25 go_process proteolysis|GO:0006508||IEA go_function ATP-dependent peptidase activity|GO:0004176||IEA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product zinc finger (C3HC4-type RING finger) family protein note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 12352 Blast hits to 11899 proteins in 1704 species: Archae - 10; Bacteria - 756; Metazoa - 7295; Fungi - 938; Plants - 1517; Viruses - 81; Other Eukaryotes - 1755 (source: NCBI BLink). protein_id AT1G18660.3p transcript_id AT1G18660.3 protein_id AT1G18660.3p transcript_id AT1G18660.3
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425489	AT1G18660.4 CDS zinc finger (C3HC4-type RING finger) family protein [TAIR10] CDS gene_syn F6A14.25, F6A14_25 go_process proteolysis|GO:0006508||IEA go_function ATP-dependent peptidase activity|GO:0004176||IEA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product zinc finger (C3HC4-type RING finger) family protein note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18660.4p transcript_id AT1G18660.4 protein_id AT1G18660.4p transcript_id AT1G18660.4
At1g18670	chr1:006427242	0.0	C/6427242-6427261,6427354-6427486,6427973-6428512,6428625-6428715,6428902-6428999,6429126-6429359,6429494-6429814,6429914-6430198,6430289-6430696	AT1G18670.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F6A14.22, F6A14_22, IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1 gene IBS1 function Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note IMPAIRED IN BABA-INDUCED STERILITY 1 (IBS1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G74330.2); Has 121773 Blast hits to 120368 proteins in 4310 species: Archae - 86; Bacteria - 13259; Metazoa - 45481; Fungi - 12893; Plants - 29647; Viruses - 443; Other Eukaryotes - 19964 (source: NCBI BLink). protein_id AT1G18670.1p transcript_id AT1G18670.1 protein_id AT1G18670.1p transcript_id AT1G18670.1
AT1G18670	chr1:006427301	0.0	C/6427301-6427486,6427973-6428512,6428625-6428715,6428902-6428999,6429126-6429359,6429494-6429814,6429914-6430198,6430289-6430696	AT1G18670.3 AT1G18670.3 CDS Protein kinase superfamily protein
AT1G18670	chr1:006427961	0.0	C/6427961-6428512,6428625-6428715,6428902-6428999,6429126-6429359,6429494-6429814,6429914-6430198,6430289-6430696	AT1G18670.2 AT1G18670.2 CDS Protein kinase superfamily protein
At1g18680	chr1:006432133	0.0	C/6432133-6432275,6432917-6433039,6433140-6433434	AT1G18680.1 CDS HNH endonuclease domain-containing protein [TAIR10] CDS gene_syn F6A14.21, F6A14_21 go_component chloroplast|GO:0009507||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function nucleic acid binding|GO:0003676||IEA go_function endonuclease activity|GO:0004519||IEA go_function nucleic acid binding|GO:0003676||ISS go_function endonuclease activity|GO:0004519||ISS product HNH endonuclease domain-containing protein note HNH endonuclease domain-containing protein; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); BEST Arabidopsis thaliana protein match is: HNH endonuclease (TAIR:AT3G47490.1); Has 84 Blast hits to 84 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G18680.1p transcript_id AT1G18680.1 protein_id AT1G18680.1p transcript_id AT1G18680.1
At1g18690	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.1 CDS Galactosyl transferase GMA12/MNN10 family protein [TAIR10] CDS gene_syn F6A14.20, F6A14_20 go_component integral to membrane|GO:0016021||IEA go_process biological_process|GO:0008150||ND go_function transferase activity|GO:0016740||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Galactosyl transferase GMA12/MNN10 family protein note Galactosyl transferase GMA12/MNN10 family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: xyloglucan xylosyltransferase 5 (TAIR:AT1G74380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18690.1p transcript_id AT1G18690.1 protein_id AT1G18690.1p transcript_id AT1G18690.1
AT1G18690	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.2 AT1G18690.2 CDS Galactosyl transferase GMA12/MNN10 family protein
AT1G18690	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.3 AT1G18690.3 CDS Galactosyl transferase GMA12/MNN10 family protein
AT1G18690	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.4 AT1G18690.4 CDS Galactosyl transferase GMA12/MNN10 family protein
AT1G18695	chr1:006435158	0.0	C/6435158-6435268,6435351-6435494,6435590-6435657,6435704-6435811,6435880-6435907	AT1G18695.1 AT1G18695.1 CDS hypothetical protein
AT1G18700	chr1:006437477	0.0	W/6437477-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.5 AT1G18700.5 CDS DNAJ heat shock N-terminal domain-containing protein
AT1G18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439896-6439938,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443029,6443783-6443814	AT1G18700.6 AT1G18700.6 CDS DNAJ heat shock N-terminal domain-containing protein
At1g18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439896-6439938,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.3 CDS DNAJ heat shock N-terminal domain-containing protein [TAIR10] CDS gene_syn F6A14.19, F6A14_19 go_function heat shock protein binding|GO:0031072||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process protein folding|GO:0006457||ISS product DNAJ heat shock N-terminal domain-containing protein note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 369 Blast hits to 369 proteins in 91 species: Archae - 2; Bacteria - 18; Metazoa - 191; Fungi - 18; Plants - 98; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT1G18700.3p transcript_id AT1G18700.3 protein_id AT1G18700.3p transcript_id AT1G18700.3
At1g18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443029,6443783-6443814	AT1G18700.2 CDS DNAJ heat shock N-terminal domain-containing protein [TAIR10] CDS gene_syn F6A14.19, F6A14_19 go_function heat shock protein binding|GO:0031072||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process protein folding|GO:0006457||ISS product DNAJ heat shock N-terminal domain-containing protein note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18700.2p transcript_id AT1G18700.2 protein_id AT1G18700.2p transcript_id AT1G18700.2
At1g18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.1 CDS DNAJ heat shock N-terminal domain-containing protein [TAIR10] CDS gene_syn F6A14.19, F6A14_19 go_function heat shock protein binding|GO:0031072||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process protein folding|GO:0006457||ISS product DNAJ heat shock N-terminal domain-containing protein note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 368 Blast hits to 366 proteins in 88 species: Archae - 2; Bacteria - 18; Metazoa - 188; Fungi - 16; Plants - 102; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT1G18700.1p transcript_id AT1G18700.1 protein_id AT1G18700.1p transcript_id AT1G18700.1
At1g18700	chr1:006437591	0.0	W/6437591-6437767,6437837-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.4 CDS DNAJ heat shock N-terminal domain-containing protein [TAIR10] CDS gene_syn F6A14.19, F6A14_19 go_function heat shock protein binding|GO:0031072||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process protein folding|GO:0006457||ISS product DNAJ heat shock N-terminal domain-containing protein note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336). protein_id AT1G18700.4p transcript_id AT1G18700.4 protein_id AT1G18700.4p transcript_id AT1G18700.4
At1g18710	chr1:006450781	0.0	W/6450781-6450913,6452076-6452205,6452446-6452986	AT1G18710.1 CDS myb domain protein 47 [TAIR10] CDS gene_syn AtMYB47, F6A14.18, F6A14_18, MYB47, myb domain protein 47 gene MYB47 function Member of the R2R3 factor gene family. go_component nucleus|GO:0005634|15610358|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to salt stress|GO:0009651|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb domain protein 47 note myb domain protein 47 (MYB47); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: leaf lamina base, stem, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 95 (TAIR:AT1G74430.1); Has 8675 Blast hits to 7987 proteins in 483 species: Archae - 0; Bacteria - 0; Metazoa - 776; Fungi - 509; Plants - 5635; Viruses - 3; Other Eukaryotes - 1752 (source: NCBI BLink). protein_id AT1G18710.1p transcript_id AT1G18710.1 protein_id AT1G18710.1p transcript_id AT1G18710.1
At1g18720	chr1:006458020	0.0	C/6458020-6458142,6458272-6458343,6458451-6458513,6459296-6459658	AT1G18720.1 CDS ER membrane protein, putative (DUF962) [TAIR10] CDS gene_syn F6A14.17, F6A14_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF962) note Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1); Has 638 Blast hits to 636 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 3; Fungi - 143; Plants - 88; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). protein_id AT1G18720.1p transcript_id AT1G18720.1 protein_id AT1G18720.1p transcript_id AT1G18720.1
AT1G18720	chr1:006458020	0.0	C/6458020-6458142,6458272-6458343,6458451-6458513,6459296-6459658	AT1G18720.2 AT1G18720.2 CDS ER membrane protein, putative (DUF962)
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460896-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.1 CDS NDH dependent flow 6 [TAIR10] CDS gene_syn F6A14.16, F6A14_16, NDF6, NDH dependent flow 6 gene NDF6 function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS go_function molecular_function|GO:0003674||ND product NDH dependent flow 6 note NDH dependent flow 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G18730.1p transcript_id AT1G18730.1 protein_id AT1G18730.1p transcript_id AT1G18730.1
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461389,6461844-6461849	AT1G18730.2 CDS NDH dependent flow 6 [TAIR10] CDS gene_syn F6A14.16, F6A14_16, NDF6, NDH dependent flow 6 gene NDF6 function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS go_function molecular_function|GO:0003674||ND product NDH dependent flow 6 note NDH dependent flow 6 (NDF6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18730.2p transcript_id AT1G18730.2 protein_id AT1G18730.2p transcript_id AT1G18730.2
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.3 CDS NDH dependent flow 6 [TAIR10] CDS gene_syn F6A14.16, F6A14_16, NDF6, NDH dependent flow 6 gene NDF6 function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS go_function molecular_function|GO:0003674||ND product NDH dependent flow 6 note NDH dependent flow 6 (NDF6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18730.3p transcript_id AT1G18730.3 protein_id AT1G18730.3p transcript_id AT1G18730.3
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461464	AT1G18730.4 CDS NDH dependent flow 6 [TAIR10] CDS gene_syn F6A14.16, F6A14_16, NDF6, NDH dependent flow 6 gene NDF6 function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS go_function molecular_function|GO:0003674||ND product NDH dependent flow 6 note NDH dependent flow 6 (NDF6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18730.4p transcript_id AT1G18730.4 protein_id AT1G18730.4p transcript_id AT1G18730.4
AT1G18730	chr1:006460929	0.0	W/6460929-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.5 AT1G18730.5 CDS NDH dependent flow 6
At1g18735	chr1:006461232	0.0	C/6461232-6461634,6461714-6461752	AT1G18735.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G18730 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G18735.1
At1g18740	chr1:006464125	0.0	W/6464125-6465273	AT1G18740.1 CDS ROH1, putative (DUF793) [TAIR10] CDS gene_syn F6A14.15, F6A14_15 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF793) note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G74450.1); Has 167 Blast hits to 164 proteins in 20 species: Archae - 3; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G18740.1p transcript_id AT1G18740.1 protein_id AT1G18740.1p transcript_id AT1G18740.1
At1g18745	chr1:006465487	0.0	C/6465487-6466454	AT1G18745.1 [TAIR10] ncRNA product other RNA transcript_id AT1G18745.1
AT1G18750	chr1:006467266	0.0	W/6467266-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.4 AT1G18750.4 CDS AGAMOUS-like 65
At1g18750	chr1:006467266	0.0	W/6467266-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469640	AT1G18750.1 CDS AGAMOUS-like 65 [TAIR10] CDS gene_syn AGAMOUS-like 65, AGL65, F6A14.14, F6A14_14 gene AGL65 function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth. go_component nucleus|GO:0005634||IEA go_process pollen development|GO:0009555|19211705|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product AGAMOUS-like 65 note AGAMOUS-like 65 (AGL65); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 30 (TAIR:AT2G03060.2); Has 6713 Blast hits to 6650 proteins in 771 species: Archae - 0; Bacteria - 0; Metazoa - 853; Fungi - 361; Plants - 5148; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink). protein_id AT1G18750.1p transcript_id AT1G18750.1 protein_id AT1G18750.1p transcript_id AT1G18750.1
AT1G18750	chr1:006467266	0.0	W/6467266-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.3 AT1G18750.3 CDS AGAMOUS-like 65
At1g18750	chr1:006467404	0.0	W/6467404-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.2 CDS AGAMOUS-like 65 [TAIR10] CDS gene_syn AGAMOUS-like 65, AGL65, F6A14.14, F6A14_14 gene AGL65 function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth. go_process pollen development|GO:0009555|19211705|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product AGAMOUS-like 65 note AGAMOUS-like 65 (AGL65); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 30 (TAIR:AT2G03060.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18750.2p transcript_id AT1G18750.2 protein_id AT1G18750.2p transcript_id AT1G18750.2
AT1G18750	chr1:006468298	0.0	W/6468298-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.5 AT1G18750.5 CDS AGAMOUS-like 65
AT1G18750	chr1:006468361	0.0	W/6468361-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.6 AT1G18750.6 CDS AGAMOUS-like 65
At1g18760	chr1:006471150	0.0	C/6471150-6471824	AT1G18760.1 CDS Zinc finger, C3HC4 type (RING finger) family protein [TAIR10] CDS gene_syn F6A14.13, F6A14_13 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product Zinc finger, C3HC4 type (RING finger) family protein note Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13228.1); Has 8667 Blast hits to 8640 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2366; Fungi - 656; Plants - 4333; Viruses - 89; Other Eukaryotes - 1223 (source: NCBI BLink). protein_id AT1G18760.1p transcript_id AT1G18760.1 protein_id AT1G18760.1p transcript_id AT1G18760.1
At1g18770	chr1:006473370	0.0	C/6473370-6473592,6473951-6474048	AT1G18770.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F6A14.24, F6A14_24 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G18760.1); Has 8585 Blast hits to 8561 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2475; Fungi - 605; Plants - 4263; Viruses - 82; Other Eukaryotes - 1160 (source: NCBI BLink). protein_id AT1G18770.1p transcript_id AT1G18770.1 protein_id AT1G18770.1p transcript_id AT1G18770.1
AT1G18773	chr1:006474948	0.0	W/6474948-6475019,6475108-6475215,6475364-6475372	AT1G18773.3 AT1G18773.3 CDS acyl thioesterase-like protein
At1g18773	chr1:006474948	0.0	W/6474948-6475019,6475108-6475215,6475381-6475398	AT1G18773.1 CDS acyl thioesterase-like protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: carboxylesterases (TAIR:AT4G22300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18773.1p transcript_id AT1G18773.1 protein_id AT1G18773.1p transcript_id AT1G18773.1
AT1G18773	chr1:006474948	0.0	W/6474948-6475019,6475108-6475215,6475613-6475654	AT1G18773.4 AT1G18773.4 CDS acyl thioesterase-like protein
AT1G18773	chr1:006474948	0.0	W/6474948-6475019,6475108-6475221	AT1G18773.2 AT1G18773.2 CDS acyl thioesterase-like protein
At1g18780	chr1:006476258	0.0	C/6476258-6477235	AT1G18780.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F6A14.12, F6A14_12 go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G29840.1); Has 8581 Blast hits to 8560 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2597; Fungi - 649; Plants - 4074; Viruses - 26; Other Eukaryotes - 1235 (source: NCBI BLink). protein_id AT1G18780.1p transcript_id AT1G18780.1 protein_id AT1G18780.1p transcript_id AT1G18780.1
At1g18790	chr1:006478851	0.0	C/6478851-6479111,6479328-6479644,6479717-6479850,6479946-6480043	AT1G18790.1 CDS RWP-RK domain-containing protein [TAIR10] CDS gene_syn F6A14.11, F6A14_11 go_component cellular_component|GO:0005575||ND go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product RWP-RK domain-containing protein note RWP-RK domain-containing protein; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G74480.1); Has 558 Blast hits to 554 proteins in 54 species: Archae - 0; Bacteria - 12; Metazoa - 59; Fungi - 0; Plants - 419; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT1G18790.1p transcript_id AT1G18790.1 protein_id AT1G18790.1p transcript_id AT1G18790.1
At1g18800	chr1:006481466	0.0	C/6481466-6481525,6481747-6481794,6481891-6481950,6482037-6482100,6482223-6482284,6482377-6482490,6482614-6482685,6482774-6482824,6482920-6483042,6483347-6483463	AT1G18800.1 CDS NAP1-related protein 2 [TAIR10] CDS gene_syn F6A14.10, F6A14_10, NAP1-related protein 2, NRP2 gene NRP2 function Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. go_component nucleus|GO:0005634|15469496|IDA go_component nucleus|GO:0005634|17122067|IDA go_component nucleus|GO:0005634||ISS go_component cytoplasm|GO:0005737|17122067|IDA go_process nucleosome assembly|GO:0006334||ISS go_process cell proliferation|GO:0008283|17122067|IGI go_process lateral root formation|GO:0010311|17122067|IGI go_process cell differentiation|GO:0030154|17122067|IGI go_function DNA binding|GO:0003677||ISS go_function chromatin binding|GO:0003682|17122067|IPI go_function histone binding|GO:0042393|17122067|IPI product NAP1-related protein 2 note NAP1-related protein 2 (NRP2); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell proliferation, cell differentiation, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1-related protein 1 (TAIR:AT1G74560.2); Has 4380 Blast hits to 3595 proteins in 373 species: Archae - 7; Bacteria - 141; Metazoa - 1827; Fungi - 714; Plants - 336; Viruses - 93; Other Eukaryotes - 1262 (source: NCBI BLink). protein_id AT1G18800.1p transcript_id AT1G18800.1 protein_id AT1G18800.1p transcript_id AT1G18800.1
At1g18810	chr1:006485709	0.0	C/6485709-6486872	AT1G18810.1 CDS phytochrome kinase substrate-related [TAIR10] CDS gene_syn F6A14.9, F6A14_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product phytochrome kinase substrate-related note phytochrome kinase substrate-related; BEST Arabidopsis thaliana protein match is: phytochrome kinase substrate 1 (TAIR:AT2G02950.1); Has 458 Blast hits to 394 proteins in 45 species: Archae - 0; Bacteria - 2; Metazoa - 60; Fungi - 9; Plants - 109; Viruses - 2; Other Eukaryotes - 276 (source: NCBI BLink). protein_id AT1G18810.1p transcript_id AT1G18810.1 protein_id AT1G18810.1p transcript_id AT1G18810.1
At1g18820	chr1:006488655	0.0	W/6488655-6488735	AT1G18820.1 [TAIR10] tRNA gene_syn 51806.TRNA-LEU-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Leu (anticodon: CAG) transcript_id AT1G18820.1
At1g18830	chr1:006489309	0.0	W/6489309-6489604,6489693-6489747,6489833-6489949,6490031-6490127,6490224-6490260,6490357-6490456,6490542-6490599,6490678-6490775,6490883-6491002,6491237-6491260,6491347-6491487,6491574-6491701,6491797-6492196,6492287-6492379,6492486-6492671,6492760-6492973,6493067-6493128,6493208-6493342,6493430-6493640,6493773-6494017,6494126-6494218	AT1G18830.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn F6A14.8, F6A14_8 go_component endomembrane system|GO:0012505||IEA go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G63460.1); Has 13982 Blast hits to 10894 proteins in 455 species: Archae - 16; Bacteria - 1751; Metazoa - 4952; Fungi - 3516; Plants - 1949; Viruses - 0; Other Eukaryotes - 1798 (source: NCBI BLink). protein_id AT1G18830.1p transcript_id AT1G18830.1 protein_id AT1G18830.1p transcript_id AT1G18830.1
AT1G18830	chr1:006489309	0.0	W/6489309-6489604,6489693-6489747,6489833-6489949,6490031-6490127,6490224-6490260,6490357-6490456,6490542-6490599,6490678-6490775,6490883-6491002,6491237-6491279,6491384-6491487,6491574-6491701,6491797-6492196,6492287-6492379,6492486-6492671,6492760-6492973,6493067-6493128,6493208-6493342,6493430-6493640,6493773-6494017,6494126-6494218	AT1G18830.2 AT1G18830.2 CDS Transducin/WD40 repeat-like superfamily protein
AT1G18830	chr1:006489309	0.0	W/6489309-6489604,6489693-6489747,6489833-6489949,6490031-6490127,6490224-6490260,6490357-6490456,6490542-6490599,6490678-6490775,6490883-6491002,6491237-6491279,6491384-6491487,6491574-6491701,6491797-6492196,6492287-6492379,6492486-6492671,6492760-6492973,6493067-6493128,6493208-6493342,6493430-6493640,6493773-6494017,6494126-6494218	AT1G18830.3 AT1G18830.3 CDS Transducin/WD40 repeat-like superfamily protein
At1g18835	chr1:006496106	0.0	C/6496106-6496372	AT1G18835.1 CDS mini zinc finger [TAIR10] CDS gene_syn MIF3, mini zinc finger gene MIF3 product mini zinc finger note mini zinc finger (MIF3); CONTAINS InterPro DOMAIN/s: ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456); BEST Arabidopsis thaliana protein match is: mini zinc finger 1 (TAIR:AT1G74660.1); Has 420 Blast hits to 420 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G18835.1p transcript_id AT1G18835.1 protein_id AT1G18835.1p transcript_id AT1G18835.1
At1g18840	chr1:006501068	0.0	C/6501068-6501099,6501193-6502222,6502303-6502383,6502469-6502675,6502793-6503080,6503355-6503435	AT1G18840.1 CDS IQ-domain 30 [TAIR10] CDS gene_syn F6A14.7, F6A14_7, IQ-domain 30, IQD30 gene IQD30 go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND go_function calmodulin binding|GO:0005516||ISS product IQ-domain 30 note IQ-domain 30 (IQD30); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1); Has 3694 Blast hits to 2988 proteins in 424 species: Archae - 6; Bacteria - 439; Metazoa - 902; Fungi - 265; Plants - 843; Viruses - 14; Other Eukaryotes - 1225 (source: NCBI BLink). protein_id AT1G18840.1p transcript_id AT1G18840.1 protein_id AT1G18840.1p transcript_id AT1G18840.1
At1g18840	chr1:006501068	0.0	C/6501068-6501099,6501193-6502222,6502303-6502383,6502469-6502675,6502793-6503080,6503355-6503435	AT1G18840.2 CDS IQ-domain 30 [TAIR10] CDS gene_syn F6A14.7, F6A14_7, IQ-domain 30, IQD30 gene IQD30 go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND go_function calmodulin binding|GO:0005516||ISS product IQ-domain 30 note IQ-domain 30 (IQD30); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18840.2p transcript_id AT1G18840.2 protein_id AT1G18840.2p transcript_id AT1G18840.2
AT1G18840	chr1:006501068	0.0	C/6501068-6501099,6501193-6502222,6502303-6502383,6502469-6502675,6502793-6503080,6503355-6503435	AT1G18840.3 AT1G18840.3 CDS IQ-domain 30
At1g18850	chr1:006504928	0.0	C/6504928-6506127	AT1G18850.1 CDS hypothetical protein [TAIR10] CDS gene_syn F6A14.6, F6A14_6 go_component nucleolus|GO:0005730|15496452|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G18850.1p transcript_id AT1G18850.1 protein_id AT1G18850.1p transcript_id AT1G18850.1
At1g18860	chr1:006508907	0.0	W/6508907-6509029,6509473-6510060,6510247-6510360,6510448-6511209	AT1G18860.1 CDS WRKY DNA-binding protein 61 [TAIR10] CDS gene_syn ATWRKY61, F6A14.5, F6A14_5, WRKY DNA-BINDING PROTEIN 61, WRKY DNA-binding protein 61, WRKY61 gene WRKY61 function member of WRKY Transcription Factor; Group II-b go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10785665|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product WRKY DNA-binding protein 61 note WRKY DNA-binding protein 61 (WRKY61); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 72 (TAIR:AT5G15130.1); Has 5252 Blast hits to 3559 proteins in 289 species: Archae - 0; Bacteria - 31; Metazoa - 146; Fungi - 97; Plants - 3463; Viruses - 1; Other Eukaryotes - 1514 (source: NCBI BLink). protein_id AT1G18860.1p transcript_id AT1G18860.1 protein_id AT1G18860.1p transcript_id AT1G18860.1
At1g18870	chr1:006515486	0.0	W/6515486-6515611,6515722-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518004-6518061,6518228-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.1 CDS isochorismate synthase 2 [TAIR10] CDS gene_syn ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ATICS2, F6A14.3, F6A14_3, ICS2, isochorismate synthase 2 gene ICS2 function Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410). go_component plastid|GO:0009536|18451262|IDA go_process phylloquinone biosynthetic process|GO:0042372|16617180|IMP go_process phylloquinone biosynthetic process|GO:0042372|18451262|IMP go_function isochorismate synthase activity|GO:0008909|18451262|IMP product isochorismate synthase 2 note isochorismate synthase 2 (ICS2); CONTAINS InterPro DOMAIN/s: Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Isochorismate synthase (InterPro:IPR004561); BEST Arabidopsis thaliana protein match is: ADC synthase superfamily protein (TAIR:AT1G74710.1); Has 14372 Blast hits to 14368 proteins in 2522 species: Archae - 246; Bacteria - 10572; Metazoa - 5; Fungi - 239; Plants - 212; Viruses - 0; Other Eukaryotes - 3098 (source: NCBI BLink). protein_id AT1G18870.1p transcript_id AT1G18870.1 protein_id AT1G18870.1p transcript_id AT1G18870.1
AT1G18870	chr1:006515486	0.0	W/6515486-6515611,6515722-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518242-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.3 AT1G18870.3 CDS isochorismate synthase 2
At1g18870	chr1:006515746	0.0	W/6515746-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518004-6518061,6518228-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.2 CDS isochorismate synthase 2 [TAIR10] CDS gene_syn ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ATICS2, F6A14.3, F6A14_3, ICS2, isochorismate synthase 2 gene ICS2 function Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410). go_component plastid|GO:0009536|18451262|IDA go_process phylloquinone biosynthetic process|GO:0042372|16617180|IMP go_process phylloquinone biosynthetic process|GO:0042372|18451262|IMP go_function isochorismate synthase activity|GO:0008909|18451262|IMP product isochorismate synthase 2 note isochorismate synthase 2 (ICS2); CONTAINS InterPro DOMAIN/s: Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Isochorismate synthase (InterPro:IPR004561); BEST Arabidopsis thaliana protein match is: ADC synthase superfamily protein (TAIR:AT1G74710.1); Has 14307 Blast hits to 14303 proteins in 2517 species: Archae - 246; Bacteria - 10487; Metazoa - 5; Fungi - 253; Plants - 208; Viruses - 0; Other Eukaryotes - 3108 (source: NCBI BLink). protein_id AT1G18870.2p transcript_id AT1G18870.2 protein_id AT1G18870.2p transcript_id AT1G18870.2
At1g18871	chr1:006519309	0.0	C/6519309-6519485	AT1G18871.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18871.1p transcript_id AT1G18871.1 protein_id AT1G18871.1p transcript_id AT1G18871.1
At1g18880	chr1:006520800	0.0	W/6520800-6520890,6521395-6521612,6521710-6522263,6522341-6523241	AT1G18880.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn F6A14.2, F6A14_2 go_component membrane|GO:0016020||IEA go_process oligopeptide transport|GO:0006857||IEA go_component membrane|GO:0016020||ISS go_process oligopeptide transport|GO:0006857||ISS go_function transporter activity|GO:0005215||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G62680.1); Has 4002 Blast hits to 3797 proteins in 617 species: Archae - 0; Bacteria - 698; Metazoa - 561; Fungi - 400; Plants - 2175; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink). protein_id AT1G18880.1p transcript_id AT1G18880.1 protein_id AT1G18880.1p transcript_id AT1G18880.1
At1g18879	chr1:006520941	0.0	W/6520941-6521124	AT1G18879.1 [TAIR10] miRNA gene_syn MIR837A, microRNA837A gene MIR837A function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AUCAGUUUCUUGUUCGUUUCA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MIR837A (microRNA837A); miRNA transcript_id AT1G18879.1
At1g18890	chr1:006523468	0.0	C/6523468-6523641,6523759-6523989,6524082-6524249,6524358-6524473,6524563-6524715,6524808-6524951,6525085-6525736	AT1G18890.1 CDS calcium-dependent protein kinase 1 [TAIR10] CDS gene_syn ATCDPK1, CALCIUM-DEPENDENT PROTEIN KINASE, CDPK1, CPK10, F6A14.1, F6A14_1, calcium-dependent protein kinase 1 gene CDPK1 function encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. go_component chloroplast|GO:0009507||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process response to water deprivation|GO:0009414|8078458|IEP go_process response to salt stress|GO:0009651|8078458|IEP go_process abscisic acid mediated signaling pathway|GO:0009738|8943201|TAS go_function protein kinase activity|GO:0004672|8943201|TAS go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS go_function kinase activity|GO:0016301||ISS product calcium-dependent protein kinase 1 note calcium-dependent protein kinase 1 (CDPK1); FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity; INVOLVED IN: response to water deprivation, response to salt stress, protein amino acid phosphorylation, N-terminal protein myristoylation, abscisic acid mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 30 (TAIR:AT1G74740.1); Has 125370 Blast hits to 119826 proteins in 3847 species: Archae - 176; Bacteria - 14154; Metazoa - 46310; Fungi - 16874; Plants - 24900; Viruses - 438; Other Eukaryotes - 22518 (source: NCBI BLink). protein_id AT1G18890.1p transcript_id AT1G18890.1 protein_id AT1G18890.1p transcript_id AT1G18890.1
At1g18900	chr1:006529778	0.0	W/6529778-6532336,6532440-6532541	AT1G18900.3 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F14D16.2, F14D16_2 product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1). protein_id AT1G18900.3p transcript_id AT1G18900.3 protein_id AT1G18900.3p transcript_id AT1G18900.3
At1g18900	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F14D16.2, F14D16_2 product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1); Has 53451 Blast hits to 14715 proteins in 301 species: Archae - 4; Bacteria - 60; Metazoa - 600; Fungi - 788; Plants - 50339; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink). protein_id AT1G18900.1p transcript_id AT1G18900.1 protein_id AT1G18900.1p transcript_id AT1G18900.1
At1g18900	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.2 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F14D16.2, F14D16_2 product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G18900.2p transcript_id AT1G18900.2 protein_id AT1G18900.2p transcript_id AT1G18900.2
AT1G18900	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.4 AT1G18900.4 CDS Pentatricopeptide repeat (PPR) superfamily protein
At1g18910	chr1:006532706	0.0	C/6532706-6532807,6532900-6532971,6533148-6533207,6533304-6533538,6533632-6533766,6533852-6534073,6534212-6535854,6535978-6536203,6536316-6536671,6536753-6536947,6537045-6537263,6537694-6537993	AT1G18910.1 CDS zinc ion binding protein [TAIR10] CDS gene_syn F14D16.31, F14D16_31 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product zinc ion binding;zinc ion binding note zinc ion binding;zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G74770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18910.1p transcript_id AT1G18910.1 protein_id AT1G18910.1p transcript_id AT1G18910.1
At1g18930	chr1:006542872	0.0	W/6542872-6543247	AT1G18930.1 [TAIR10] mRNA
At1g18930	chr1:006542872	0.0	W/6542872-6543247	AT1G18930 [TAIR10] TE pseudo gene_syn F14D16.7, F14D16_7 note Transposable element gene, pseudogene, hypothetical protein
At1g18940	chr1:006543852	0.0	W/6543852-6544328,6544489-6545592	AT1G18940.1 CDS Nodulin-like / Major Facilitator Superfamily protein [TAIR10] CDS gene_syn F14D16.8, F14D16_8 go_component endomembrane system|GO:0012505||IEA go_process transmembrane transport|GO:0055085||IEA product Nodulin-like / Major Facilitator Superfamily protein note Nodulin-like / Major Facilitator Superfamily protein; INVOLVED IN: transmembrane transport; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Nodulin-like / Major Facilitator Superfamily protein (TAIR:AT1G74780.1); Has 2227 Blast hits to 2174 proteins in 664 species: Archae - 25; Bacteria - 1034; Metazoa - 33; Fungi - 244; Plants - 602; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink). protein_id AT1G18940.1p transcript_id AT1G18940.1 protein_id AT1G18940.1p transcript_id AT1G18940.1
AT1G18950	chr1:006546539	0.0	W/6546539-6546979,6547091-6547201,6548182-6548268,6548358-6548395,6548475-6548556,6548843-6548949,6549029-6549185,6549867-6549959,6550074-6550194,6550318-6550360,6550478-6550669,6550763-6551549	AT1G18950.3 AT1G18950.3 CDS DDT domain superfamily
At1g18950	chr1:006546539	0.0	W/6546539-6546979,6547091-6547201,6548182-6548268,6548358-6548395,6548475-6548556,6548843-6548949,6549029-6549185,6549867-6549959,6550074-6550194,6550318-6550360,6550478-6550669,6550769-6551549	AT1G18950.1 CDS DDT domain superfamily [TAIR10] CDS gene_syn F14D16.10, F14D16_10 go_process biological_process|GO:0008150||ND go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS product DDT domain superfamily note DDT domain superfamily; CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1); Has 20293 Blast hits to 13585 proteins in 823 species: Archae - 41; Bacteria - 1919; Metazoa - 8043; Fungi - 2539; Plants - 1031; Viruses - 220; Other Eukaryotes - 6500 (source: NCBI BLink). protein_id AT1G18950.1p transcript_id AT1G18950.1 protein_id AT1G18950.1p transcript_id AT1G18950.1
AT1G18950	chr1:006546539	0.0	W/6546539-6546979,6547091-6547201,6548182-6548268,6548358-6548395,6548475-6548556,6548843-6548949,6549029-6549185,6549867-6549959,6550074-6550194,6550318-6550360,6550478-6550681,6550763-6551549	AT1G18950.2 AT1G18950.2 CDS DDT domain superfamily
At1g18960	chr1:006552854	0.0	W/6552854-6552971,6553055-6553178,6553259-6553940	AT1G18960.1 CDS myb-like HTH transcriptional regulator family protein [TAIR10] CDS gene_syn F14D16.11, F14D16_11 go_process regulation of transcription|GO:0045449||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb-like HTH transcriptional regulator family protein note myb-like HTH transcriptional regulator family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 103 (TAIR:AT5G56110.1); Has 5693 Blast hits to 5684 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 67; Plants - 4922; Viruses - 3; Other Eukaryotes - 403 (source: NCBI BLink). protein_id AT1G18960.1p transcript_id AT1G18960.1 protein_id AT1G18960.1p transcript_id AT1G18960.1
At1g18970	chr1:006554702	0.0	C/6554702-6555364	AT1G18970.1 CDS germin-like protein 4 [TAIR10] CDS gene_syn F14D16.12, F14D16_12, GLP4, germin-like protein 4 gene GLP4 function Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record). go_component endomembrane system|GO:0012505||IEA go_component apoplast|GO:0048046||IEA go_function manganese ion binding|GO:0030145||IEA go_function nutrient reservoir activity|GO:0045735||IEA product germin-like protein 4 note germin-like protein 4 (GLP4); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G18970.1p transcript_id AT1G18970.1 protein_id AT1G18970.1p transcript_id AT1G18970.1
At1g18980	chr1:006557364	0.0	C/6557364-6558026	AT1G18980.1 CDS RmlC-like cupins superfamily protein [TAIR10] CDS gene_syn F14D16.13, F14D16_13 go_component endomembrane system|GO:0012505||IEA go_component apoplast|GO:0048046||IEA go_function manganese ion binding|GO:0030145||IEA go_function nutrient reservoir activity|GO:0045735||IEA go_process biological_process|GO:0008150||ND product RmlC-like cupins superfamily protein note RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: germin-like protein 4 (TAIR:AT1G18970.1); Has 1578 Blast hits to 1564 proteins in 115 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 29; Plants - 1449; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). protein_id AT1G18980.1p transcript_id AT1G18980.1 protein_id AT1G18980.1p transcript_id AT1G18980.1
AT1G18975	chr1:006557553	0.0	W/6557553-6557747	AT1G18975.1 AT1G18975.1 CDS hypothetical protein
At1g18990	chr1:006558778	0.0	C/6558778-6558977,6559058-6560432	AT1G18990.1 CDS myosin-binding protein, putative (Protein of unknown function, DUF593) [TAIR10] CDS gene_syn F14D16.14, F14D16_14 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF593 note Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G74830.1); Has 1377 Blast hits to 1217 proteins in 215 species: Archae - 6; Bacteria - 79; Metazoa - 450; Fungi - 121; Plants - 429; Viruses - 14; Other Eukaryotes - 278 (source: NCBI BLink). protein_id AT1G18990.1p transcript_id AT1G18990.1 protein_id AT1G18990.1p transcript_id AT1G18990.1
At1g19000	chr1:006561335	0.0	C/6561335-6561682,6561983-6562191,6562384-6562684	AT1G19000.1 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn F14D16.15, F14D16_15 go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G74840.1); Has 1188 Blast hits to 1183 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1018; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink). protein_id AT1G19000.1p transcript_id AT1G19000.1 protein_id AT1G19000.1p transcript_id AT1G19000.1
At1g19000	chr1:006561335	0.0	C/6561335-6561682,6561983-6562191,6562384-6562684	AT1G19000.2 CDS Homeodomain-like superfamily protein [TAIR10] CDS gene_syn F14D16.15, F14D16_15 go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G74840.1); Has 1188 Blast hits to 1183 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1018; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink). protein_id AT1G19000.2p transcript_id AT1G19000.2 protein_id AT1G19000.2p transcript_id AT1G19000.2
At1g19010	chr1:006565616	0.0	W/6565616-6565630,6565869-6566045,6566413-6567120,6567295-6567354	AT1G19010.1 CDS hypothetical protein [TAIR10] CDS gene_syn F14D16.16, F14D16_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74860.1); Has 337 Blast hits to 320 proteins in 97 species: Archae - 0; Bacteria - 14; Metazoa - 153; Fungi - 26; Plants - 76; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT1G19010.1p transcript_id AT1G19010.1 protein_id AT1G19010.1p transcript_id AT1G19010.1
At1g19010	chr1:006565941	0.0	W/6565941-6566045,6566413-6567120,6567295-6567354	AT1G19010.2 CDS hypothetical protein [TAIR10] CDS gene_syn F14D16.16, F14D16_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74860.1); Has 238 Blast hits to 225 proteins in 78 species: Archae - 0; Bacteria - 7; Metazoa - 99; Fungi - 18; Plants - 69; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). protein_id AT1G19010.2p transcript_id AT1G19010.2 protein_id AT1G19010.2p transcript_id AT1G19010.2
At1g19020	chr1:006568142	0.0	W/6568142-6568402	AT1G19020.1 CDS CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, putative [TAIR10] CDS gene_syn F14D16.17, F14D16_17 go_component cellular_component|GO:0005575||ND go_process response to oxidative stress|GO:0006979|18614705|IMP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19020.1p transcript_id AT1G19020.1 protein_id AT1G19020.1p transcript_id AT1G19020.1
At1g19025	chr1:006568920	0.0	W/6568920-6569123,6569198-6569303,6569380-6569600,6569682-6570800	AT1G19025.1 CDS DNA repair metallo-beta-lactamase family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product DNA repair metallo-beta-lactamase family protein note DNA repair metallo-beta-lactamase family protein; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT1G27410.1); Has 1078 Blast hits to 1060 proteins in 342 species: Archae - 34; Bacteria - 280; Metazoa - 259; Fungi - 220; Plants - 166; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). protein_id AT1G19025.1p transcript_id AT1G19025.1 protein_id AT1G19025.1p transcript_id AT1G19025.1
AT1G19025	chr1:006569388	0.0	W/6569388-6569600,6569682-6570800	AT1G19025.2 AT1G19025.2 CDS DNA repair metallo-beta-lactamase family protein
AT1G19025	chr1:006569499	0.0	W/6569499-6569600,6569682-6570800	AT1G19025.3 AT1G19025.3 CDS DNA repair metallo-beta-lactamase family protein
At1g19030	chr1:006572317	0.0	W/6572317-6572706,6572788-6572937	AT1G19030.1 CDS non-LTR retroelement reverse transcriptase, putative [TAIR10] mRNA
At1g19040	chr1:006576895	0.0	W/6576895-6577413	AT1G19040.1 CDS NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [TAIR10] CDS gene_syn F14D16.19, F14D16_19 go_component cellular_component|GO:0005575||ND go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC (No Apical Meristem) domain transcriptional regulator superfamily protein note NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 6 (TAIR:AT1G03490.1); Has 740 Blast hits to 735 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 740; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19040.1p transcript_id AT1G19040.1 protein_id AT1G19040.1p transcript_id AT1G19040.1
At1g19050	chr1:006577919	0.0	C/6577919-6578165,6578263-6578333,6578427-6578504,6578724-6578800,6578931-6579078	AT1G19050.1 CDS response regulator 7 [TAIR10] CDS gene_syn ARR7, F14D16.20, F14D16_20, response regulator 7 gene ARR7 function Encodes a member of the Arabidopsis response regulator (ARR) family, most closely related to ARR15. A two-component response regulator protein containing a phosphate accepting domain in the receiver domain but lacking a DNA binding domain in the output domain. Involved in response to cytokinin and meristem stem cell maintenance. Arr7 protein is stabilized by cytokinin. go_component nucleus|GO:0005634|18642946|IDA go_process two-component signal transduction system (phosphorelay)|GO:0000160|9482949|TAS go_process response to cytokinin stimulus|GO:0009735|16407152|IEP go_process cytokinin mediated signaling pathway|GO:0009736|12068096|TAS go_process cytokinin mediated signaling pathway|GO:0009736|18065689|IMP go_process response to chitin|GO:0010200|17722694|IEP go_process stem cell maintenance|GO:0019827|16372013|IMP go_function two-component response regulator activity|GO:0000156|11574878|ISS go_function two-component response regulator activity|GO:0000156|12068096|ISS go_function two-component response regulator activity|GO:0000156|9482949|ISS go_function two-component response regulator activity|GO:0000156||ISS go_function transcription regulator activity|GO:0030528|12068096|TAS product response regulator 7 note response regulator 7 (ARR7); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 15 (TAIR:AT1G74890.1); Has 53636 Blast hits to 53063 proteins in 2702 species: Archae - 285; Bacteria - 47261; Metazoa - 20; Fungi - 584; Plants - 1468; Viruses - 6; Other Eukaryotes - 4012 (source: NCBI BLink). protein_id AT1G19050.1p transcript_id AT1G19050.1 protein_id AT1G19050.1p transcript_id AT1G19050.1
At1g19060	chr1:006582066	0.0	C/6582066-6582434,6582563-6582652,6582730-6582839,6582926-6582989,6583228-6583374,6583518-6583601	AT1G19060.1 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn F14D16.21, F14D16_21 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G02770.1); Has 198 Blast hits to 197 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19060.1p transcript_id AT1G19060.1 protein_id AT1G19060.1p transcript_id AT1G19060.1
At1g19070	chr1:006584454	0.0	W/6584454-6584705	AT1G19070.1 CDS F-box family protein [TAIR10] CDS gene_syn F14D16.22, F14D16_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G22280.1); Has 1388 Blast hits to 1366 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1388; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19070.1p transcript_id AT1G19070.1 protein_id AT1G19070.1p transcript_id AT1G19070.1
At1g19080	chr1:006585087	0.0	W/6585087-6585131,6585214-6585282,6585373-6585473,6585673-6585765,6585952-6586091,6586199-6586308	AT1G19080.1 CDS GINS complex protein [TAIR10] CDS gene_syn F14D16.33, PSF3, Partner of SLD5 3, TITAN 10, TTN10 gene TTN10 function This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development. go_component GINS complex|GO:0000811|17556508|ISS go_process DNA-dependent DNA replication|GO:0006261|17556508|ISS go_process embryo development ending in seed dormancy|GO:0009793|15266054|IMP go_function molecular_function|GO:0003674||ND product GINS complex protein note TITAN 10 (TTN10); CONTAINS InterPro DOMAIN/s: GINS complex, subunit Psf3 (InterPro:IPR010492), GINS complex (InterPro:IPR021151); BEST Arabidopsis thaliana protein match is: GINS complex protein (TAIR:AT3G55490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19080.1p transcript_id AT1G19080.1 protein_id AT1G19080.1p transcript_id AT1G19080.1
At1g19080	chr1:006585087	0.0	W/6585087-6585131,6585214-6585282,6585373-6585473,6585673-6585765,6585952-6586091,6586199-6586308	AT1G19080.2 CDS GINS complex protein [TAIR10] CDS gene_syn F14D16.33, PSF3, Partner of SLD5 3, TITAN 10, TTN10 gene TTN10 function This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development. go_component GINS complex|GO:0000811|17556508|ISS go_process DNA-dependent DNA replication|GO:0006261|17556508|ISS go_process embryo development ending in seed dormancy|GO:0009793|15266054|IMP go_function molecular_function|GO:0003674||ND product GINS complex protein note TITAN 10 (TTN10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA-dependent DNA replication, embryo development ending in seed dormancy; LOCATED IN: GINS complex; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: GINS complex, subunit Psf3 (InterPro:IPR010492), GINS complex (InterPro:IPR021151); BEST Arabidopsis thaliana protein match is: GINS complex protein (TAIR:AT3G55490.1). protein_id AT1G19080.2p transcript_id AT1G19080.2 protein_id AT1G19080.2p transcript_id AT1G19080.2
At1g19086	chr1:006588542	0.0	W/6588542-6588575,6588652-6588819,6588919-6589004,6589083-6589256	AT1G19086.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19086.1p transcript_id AT1G19086.1 protein_id AT1G19086.1p transcript_id AT1G19086.1
At1g19090	chr1:006590350	0.0	W/6590350-6591094,6591177-6591323,6591409-6591728,6591804-6592038,6592121-6592265,6592361-6592612	AT1G19090.1 CDS receptor-like serine/threonine kinase 2 [TAIR10] CDS gene_syn CRK1, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 1, F14D16.24, F14D16_24, RKF2, receptor-like serine/threonine kinase 2 gene RKF2 function receptor-like serine/threonine kinase (RKF2) go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9687063|ISS go_function kinase activity|GO:0016301||ISS product receptor-like serine/threonine kinase 2 note receptor-like serine/threonine kinase 2 (RKF2); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (TAIR:AT5G40380.1); Has 112374 Blast hits to 111073 proteins in 3970 species: Archae - 108; Bacteria - 13388; Metazoa - 41005; Fungi - 9087; Plants - 31953; Viruses - 460; Other Eukaryotes - 16373 (source: NCBI BLink). protein_id AT1G19090.1p transcript_id AT1G19090.1 protein_id AT1G19090.1p transcript_id AT1G19090.1
At1g19100	chr1:006595560	0.0	W/6595560-6595878,6596043-6596117,6596199-6596233,6596566-6596644,6596748-6596837,6596998-6597073,6597184-6597262,6597340-6597468,6597915-6598013,6598110-6598196,6598464-6598610,6598707-6598799,6599093-6599144,6599259-6599370,6599621-6599790,6600164-6600273,6600528-6600607,6600694-6600736,6601043-6601159	AT1G19100.1 CDS Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [TAIR10] CDS gene_syn F14D16.25, F14D16_25 go_component chloroplast envelope|GO:0009941|12938931|IDA go_function ATP binding|GO:0005524||IEA go_process biological_process|GO:0008150||ND product Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein note Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (TAIR:AT4G36280.1); Has 533 Blast hits to 518 proteins in 94 species: Archae - 0; Bacteria - 53; Metazoa - 227; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). protein_id AT1G19100.1p transcript_id AT1G19100.1 protein_id AT1G19100.1p transcript_id AT1G19100.1
At1g19110	chr1:006602270	0.0	W/6602270-6602665,6602832-6602984,6603071-6603283,6603376-6603465,6603580-6603696,6603777-6604046,6604146-6604302,6604389-6604466,6604559-6604659,6604764-6604934,6605039-6605113,6605188-6605295,6605431-6605766	AT1G19110.1 CDS inter-alpha-trypsin inhibitor heavy chain-related [TAIR10] CDS gene_syn F14D16.26, F14D16_26 go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product inter-alpha-trypsin inhibitor heavy chain-related note inter-alpha-trypsin inhibitor heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72500.1); Has 1620 Blast hits to 1609 proteins in 312 species: Archae - 28; Bacteria - 510; Metazoa - 544; Fungi - 65; Plants - 218; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink). protein_id AT1G19110.1p transcript_id AT1G19110.1 protein_id AT1G19110.1p transcript_id AT1G19110.1
At1g19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607303-6607313	AT1G19115.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19115.1p transcript_id AT1G19115.1 protein_id AT1G19115.1p transcript_id AT1G19115.1
AT1G19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607466-6607485	AT1G19115.4 AT1G19115.4 CDS hypothetical protein
At1g19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607657-6607667	AT1G19115.2 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19115.2p transcript_id AT1G19115.2 protein_id AT1G19115.2p transcript_id AT1G19115.2
At1g19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607197	AT1G19115.3 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19115.3p transcript_id AT1G19115.3 protein_id AT1G19115.3p transcript_id AT1G19115.3
At1g19120	chr1:006608288	0.0	W/6608288-6608348,6608497-6608565,6608653-6608768,6608872-6608934,6609085-6609162	AT1G19120.1 CDS Small nuclear ribonucleoprotein family protein [TAIR10] CDS gene_syn F14D16.28, F14D16_28 go_component nucleus|GO:0005634||ISS go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Small nuclear ribonucleoprotein family protein note Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G14080.2); Has 1149 Blast hits to 1149 proteins in 232 species: Archae - 65; Bacteria - 0; Metazoa - 426; Fungi - 329; Plants - 203; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). protein_id AT1G19120.1p transcript_id AT1G19120.1 protein_id AT1G19120.1p transcript_id AT1G19120.1
At1g19130	chr1:006609545	0.0	C/6609545-6609865,6609973-6610094,6610420-6610555	AT1G19130.1 CDS RmlC-like jelly roll fold protein [TAIR10] CDS gene_syn F14D16.29, F14D16_29 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). protein_id AT1G19130.1p transcript_id AT1G19130.1 protein_id AT1G19130.1p transcript_id AT1G19130.1
At1g19140	chr1:006611026	0.0	C/6611026-6611136,6611238-6611311,6611398-6611569,6611650-6611811,6611920-6612027,6612106-6612414	AT1G19140.1 CDS ubiquinone biosynthesis COQ9-like protein [TAIR10] CDS gene_syn F14D16.30, F14D16_30 go_process ubiquinone biosynthetic process|GO:0006744||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 748 Blast hits to 748 proteins in 260 species: Archae - 0; Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). protein_id AT1G19140.1p transcript_id AT1G19140.1 protein_id AT1G19140.1p transcript_id AT1G19140.1
At1g19140	chr1:006611026	0.0	C/6611026-6611136,6611238-6611314,6611398-6611569,6611650-6611811,6611920-6612027,6612106-6612414	AT1G19140.2 CDS ubiquinone biosynthesis COQ9-like protein [TAIR10] CDS gene_syn F14D16.30, F14D16_30 go_process ubiquinone biosynthetic process|GO:0006744||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19140.2p transcript_id AT1G19140.2 protein_id AT1G19140.2p transcript_id AT1G19140.2
At1g19150	chr1:006612806	0.0	W/6612806-6613085,6613169-6613683,6613782-6613799	AT1G19150.1 CDS photosystem I light harvesting complex gene 6 [TAIR10] CDS gene_syn LHCA2*1, LHCA6, PSI TYPE II CHLOROPHYLL A/B-BINDING PROTEIN, T29M8.2, T29M8_2, photosystem I light harvesting complex gene 6 gene LHCA6 function PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, go_component chloroplast|GO:0009507|18431481|IDA go_component light-harvesting complex|GO:0030076||ISS go_process response to blue light|GO:0009637|18820083|IEP go_process response to red light|GO:0010114|18820083|IEP go_process response to far red light|GO:0010218|18820083|IEP go_process photosynthesis|GO:0015979||ISS go_function chlorophyll binding|GO:0016168||ISS product photosystem I light harvesting complex gene 6 note photosystem I light harvesting complex gene 6 (LHCA6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2345 Blast hits to 2241 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1989; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink). protein_id AT1G19150.1p transcript_id AT1G19150.1 protein_id AT1G19150.1p transcript_id AT1G19150.1
At1g19160	chr1:006614162	0.0	C/6614162-6615214	AT1G19160.1 CDS F-box family protein [TAIR10] CDS gene_syn T29M8.3, T29M8_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G52610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19160.1p transcript_id AT1G19160.1 protein_id AT1G19160.1p transcript_id AT1G19160.1
At1g19170	chr1:006616777	0.0	W/6616777-6617247,6617562-6617682,6617762-6618010,6618100-6618253,6618350-6618875	AT1G19170.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn T29M8.4, T29M8_4 go_component mitochondrion|GO:0005739||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function polygalacturonase activity|GO:0004650||IEA go_process carbohydrate metabolic process|GO:0005975||ISS go_function polygalacturonase activity|GO:0004650||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G42950.1); Has 4384 Blast hits to 4371 proteins in 509 species: Archae - 6; Bacteria - 1552; Metazoa - 14; Fungi - 1224; Plants - 1428; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). protein_id AT1G19170.1p transcript_id AT1G19170.1 protein_id AT1G19170.1p transcript_id AT1G19170.1
At1g19180	chr1:006622312	0.0	W/6622312-6622474,6622673-6623271	AT1G19180.1 CDS jasmonate-zim-domain protein 1 [TAIR10] CDS gene_syn JAZ1, T29M8.5, T29M8_5, TIFY10A, jasmonate-zim-domain protein 1 gene JAZ1 function JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. go_component nucleus|GO:0005634|17637677|IDA go_process pollen development|GO:0009555|17637677|IMP go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP go_process jasmonic acid mediated signaling pathway|GO:0009867|17637677|IMP go_process flower development|GO:0009908|17637677|IMP go_process defense response to bacterium|GO:0042742|18547396|IMP go_function protein binding|GO:0005515|17637677|IPI go_function protein binding|GO:0005515|20360743|IPI product jasmonate-zim-domain protein 1 note jasmonate-zim-domain protein 1 (JAZ1); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: TIFY domain/Divergent CCT motif family protein (TAIR:AT1G74950.1); Has 439 Blast hits to 432 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19180.1p transcript_id AT1G19180.1 protein_id AT1G19180.1p transcript_id AT1G19180.1
AT1G19180	chr1:006622312	0.0	W/6622312-6622474,6622673-6623271	AT1G19180.3 AT1G19180.3 CDS jasmonate-zim-domain protein 1
At1g19180	chr1:006622708	0.0	W/6622708-6623271	AT1G19180.2 CDS jasmonate-zim-domain protein 1 [TAIR10] CDS gene_syn JAZ1, T29M8.5, T29M8_5, TIFY10A, jasmonate-zim-domain protein 1 gene JAZ1 function JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. go_component nucleus|GO:0005634|17637677|IDA go_process pollen development|GO:0009555|17637677|IMP go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP go_process jasmonic acid mediated signaling pathway|GO:0009867|17637677|IMP go_process flower development|GO:0009908|17637677|IMP go_process defense response to bacterium|GO:0042742|18547396|IMP go_function protein binding|GO:0005515|17637677|IPI go_function protein binding|GO:0005515|20360743|IPI product jasmonate-zim-domain protein 1 note TIFY10A; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: TIFY domain/Divergent CCT motif family protein (TAIR:AT1G74950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19180.2p transcript_id AT1G19180.2 protein_id AT1G19180.2p transcript_id AT1G19180.2
At1g19190	chr1:006623876	0.0	W/6623876-6624832	AT1G19190.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn T29M8.6, T29M8_6 go_process metabolic process|GO:0008152||IEA go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G03550.1); Has 9471 Blast hits to 9453 proteins in 1548 species: Archae - 114; Bacteria - 5498; Metazoa - 707; Fungi - 823; Plants - 1388; Viruses - 3; Other Eukaryotes - 938 (source: NCBI BLink). protein_id AT1G19190.1p transcript_id AT1G19190.1 protein_id AT1G19190.1p transcript_id AT1G19190.1
At1g19200	chr1:006625104	0.0	C/6625104-6625242,6625348-6625856	AT1G19200.1 CDS cyclin-dependent kinase, putative (DUF581) [TAIR10] CDS gene_syn T29M8.7, T29M8_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF581) note Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G74940.1); Has 464 Blast hits to 464 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 464; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19200.1p transcript_id AT1G19200.1 protein_id AT1G19200.1p transcript_id AT1G19200.1
AT1G19200	chr1:006625104	0.0	C/6625104-6625242,6625348-6625895	AT1G19200.2 AT1G19200.2 CDS cyclin-dependent kinase, putative (DUF581)
At1g19210	chr1:006626973	0.0	C/6626973-6627530	AT1G19210.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn T29M8.8, T29M8_8 function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Integrase-type DNA-binding superfamily protein note Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, C globular stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G74930.1); Has 5600 Blast hits to 5488 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5592; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G19210.1p transcript_id AT1G19210.1 protein_id AT1G19210.1p transcript_id AT1G19210.1
At1g19220	chr1:006628395	0.0	C/6628395-6628578,6628663-6628853,6628945-6630689,6630772-6630910,6630988-6631348,6631425-6631515,6631603-6631687,6631779-6631934,6632019-6632075,6632153-6632248,6632328-6632440,6632737-6632779	AT1G19220.1 CDS auxin response factor 19 [TAIR10] CDS gene_syn ARF11, ARF19, AUXIN RESPONSE FACTOR11, IAA22, T29M8.9, T29M8_9, auxin response factor 19, indole-3-acetic acid inducible 22 gene ARF19 function Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and , together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. go_component nucleus|GO:0005634|17259263|IDA go_process response to ethylene stimulus|GO:0009723|16461383|IMP go_process response to auxin stimulus|GO:0009733|15659631|IMP go_process response to auxin stimulus|GO:0009733|17259263|IMP go_process response to auxin stimulus|GO:0009733||NAS go_process lateral root primordium development|GO:0010386|17259263|IGI go_process leaf development|GO:0048366|15960621|IGI go_process lateral root development|GO:0048527|15960621|IGI go_function DNA binding|GO:0003677|17259263|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product auxin response factor 19 note auxin response factor 19 (ARF19); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (TAIR:AT5G20730.2); Has 61717 Blast hits to 31683 proteins in 1304 species: Archae - 12; Bacteria - 3231; Metazoa - 21055; Fungi - 6588; Plants - 6362; Viruses - 195; Other Eukaryotes - 24274 (source: NCBI BLink). protein_id AT1G19220.1p transcript_id AT1G19220.1 protein_id AT1G19220.1p transcript_id AT1G19220.1
At1g19230	chr1:006644189	0.0	W/6644189-6644864,6644937-6645096,6646070-6646118,6646201-6646314,6646392-6646476,6646555-6646817,6646913-6647296,6647389-6647484,6647575-6647690,6647772-6647945,6648028-6648181,6648267-6648458,6648551-6648679,6648761-6648839,6649040-6649149	AT1G19230.1 CDS Riboflavin synthase-like superfamily protein [TAIR10] CDS gene_syn T29M8.10, T29M8_10 go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_function peroxidase activity|GO:0004601||IEA go_function iron ion binding|GO:0005506||IEA go_function calcium ion binding|GO:0005509||IEA go_function electron carrier activity|GO:0009055||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA go_process defense response|GO:0006952|9628030|TAS product Riboflavin synthase-like superfamily protein note Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), FAD-binding 8 (InterPro:IPR013112), EF-HAND 2 (InterPro:IPR018249), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1); Has 2473 Blast hits to 2332 proteins in 402 species: Archae - 8; Bacteria - 385; Metazoa - 719; Fungi - 641; Plants - 520; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink). protein_id AT1G19230.1p transcript_id AT1G19230.1 protein_id AT1G19230.1p transcript_id AT1G19230.1
At1g19230	chr1:006644189	0.0	W/6644189-6644864,6644937-6645096,6646070-6646118,6646201-6646314,6646392-6646817,6646913-6647296,6647389-6647484,6647575-6647690,6647772-6647945,6648028-6648181,6648267-6648458,6648551-6648679,6648761-6648839,6649040-6649146	AT1G19230.2 CDS Riboflavin synthase-like superfamily protein [TAIR10] CDS gene_syn T29M8.10, T29M8_10 go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_function peroxidase activity|GO:0004601||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA go_process defense response|GO:0006952|9628030|TAS product Riboflavin synthase-like superfamily protein note Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Cytochrome b245, heavy chain (InterPro:IPR000778), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1). protein_id AT1G19230.2p transcript_id AT1G19230.2 protein_id AT1G19230.2p transcript_id AT1G19230.2
AT1G19230	chr1:006644189	0.0	W/6644189-6644864,6644937-6645096,6646070-6646118,6646201-6646314,6646392-6646817,6646913-6647296,6647389-6647484,6647575-6647690,6647772-6647945,6648028-6648181,6648267-6648458,6648551-6648679,6648761-6648839,6649040-6649149	AT1G19230.3 AT1G19230.3 CDS Riboflavin synthase-like superfamily protein
At1g19240	chr1:006649562	0.0	C/6649562-6649694,6650203-6650384	AT1G19240.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T29M8.11, T29M8_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19240.1p transcript_id AT1G19240.1 protein_id AT1G19240.1p transcript_id AT1G19240.1
At1g19250	chr1:006650656	0.0	C/6650656-6651022,6651227-6651576,6651663-6651841,6652141-6652381,6652598-6653053	AT1G19250.1 CDS flavin-dependent monooxygenase 1 [TAIR10] CDS gene_syn FMO1, T29M8.12, T29M8_12, flavin-dependent monooxygenase 1 gene FMO1 function FMO1 is required for full expression of TIR-NB-LRR conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites. go_component endomembrane system|GO:0012505||IEA go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA go_function flavin-containing monooxygenase activity|GO:0004499||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function NADP or NADPH binding|GO:0050661||IEA go_process plant-type hypersensitive response|GO:0009626|16531493|IMP go_process systemic acquired resistance|GO:0009627|17419843|IEP go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|16531493|IMP go_process defense response signaling pathway, resistance gene-independent|GO:0010204|16856982|IMP go_process defense response to bacterium|GO:0042742|16856982|IMP go_process defense response to fungus|GO:0050832|16856982|IMP go_process response to other organism|GO:0051707|16531493|IEP go_function monooxygenase activity|GO:0004497||ISS product flavin-dependent monooxygenase 1 note flavin-dependent monooxygenase 1 (FMO1); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: stem, leaf whorl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Dimethylaniline monooxygenase, N-oxide-forming (InterPro:IPR012143), Flavin-containing amine oxidase (InterPro:IPR001613), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G45180.1); Has 7639 Blast hits to 7432 proteins in 837 species: Archae - 6; Bacteria - 3396; Metazoa - 753; Fungi - 1311; Plants - 833; Viruses - 0; Other Eukaryotes - 1340 (source: NCBI BLink). protein_id AT1G19250.1p transcript_id AT1G19250.1 protein_id AT1G19250.1p transcript_id AT1G19250.1
At1g19260	chr1:006657260	0.0	C/6657260-6659569	AT1G19260.1 CDS TTF-type zinc finger protein with HAT dimerisation domain [TAIR10] CDS gene_syn T29M8.13, T29M8_13 go_function protein dimerization activity|GO:0046983||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product TTF-type zinc finger protein with HAT dimerisation domain note TTF-type zinc finger protein with HAT dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09660.1); Has 1044 Blast hits to 976 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 1; Plants - 428; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G19260.1p transcript_id AT1G19260.1 protein_id AT1G19260.1p transcript_id AT1G19260.1
At1g19270	chr1:006663327	0.0	W/6663327-6663512,6663622-6663715,6663823-6664051,6664151-6664271,6664370-6664453,6664583-6664702,6664805-6665017,6665118-6665296,6665379-6665437,6665532-6665845	AT1G19270.1 CDS DA1 [TAIR10] CDS gene_syn DA1, T29M8.14, T29M8_14 gene DA1 go_process negative regulation of organ growth|GO:0046621|18483219|IMP go_process seed morphogenesis|GO:0048317|18483219|IMP go_process ovule morphogenesis|GO:0048482|18483219|IMP go_function ubiquitin binding|GO:0043130|18483219|IPI product DA1 note DA1 (DA1); CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT4G36860.1); Has 3538 Blast hits to 2617 proteins in 167 species: Archae - 0; Bacteria - 18; Metazoa - 3009; Fungi - 63; Plants - 177; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink). protein_id AT1G19270.1p transcript_id AT1G19270.1 protein_id AT1G19270.1p transcript_id AT1G19270.1
AT1G19270	chr1:006663327	0.0	W/6663327-6663512,6663622-6663715,6663823-6664051,6664151-6664271,6664370-6664453,6664583-6664702,6664805-6665017,6665118-6665296,6665379-6665437,6665532-6665845	AT1G19270.2 AT1G19270.2 CDS DA1
At1g19290	chr1:006666249	0.0	W/6666249-6668963	AT1G19290.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS go_component mitochondrion|GO:0005739||IEA product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19290.1p transcript_id AT1G19290.1 protein_id AT1G19290.1p transcript_id AT1G19290.1
AT1G19290	chr1:006666249	0.0	W/6666249-6668963	AT1G19290.2 AT1G19290.2 CDS Pentatricopeptide repeat (PPR) superfamily protein
At1g19300	chr1:006671451	0.0	C/6671451-6672506	AT1G19300.1 CDS Nucleotide-diphospho-sugar transferases superfamily protein [TAIR10] CDS gene_syn ATGATL1, F18O14.2, F18O14_2, GALACTURONOSYLTRANSFERASE-LIKE 1, GAOLAOZHUANGREN 1, GATL1, GLZ1, PARVUS gene PARVUS function The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls. go_component endoplasmic reticulum|GO:0005783|17991630|IDA go_process xylem and phloem pattern formation|GO:0010051|17944810|IMP go_process glucuronoxylan biosynthetic process|GO:0010417|17944810|IMP go_process carbohydrate biosynthetic process|GO:0016051||ISS go_process multicellular organism reproduction|GO:0032504|17944810|IMP go_process leaf development|GO:0048366|17944810|IMP go_process cell wall thickening|GO:0052386|17991630|IMP go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS product Nucleotide-diphospho-sugar transferases superfamily protein note PARVUS (PARVUS); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 2 (TAIR:AT3G50760.1); Has 1825 Blast hits to 1814 proteins in 439 species: Archae - 2; Bacteria - 918; Metazoa - 149; Fungi - 0; Plants - 715; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). protein_id AT1G19300.1p transcript_id AT1G19300.1 protein_id AT1G19300.1p transcript_id AT1G19300.1
At1g19310	chr1:006676424	0.0	C/6676424-6677104	AT1G19310.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F18O14.3, F18O14_3 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink). protein_id AT1G19310.1p transcript_id AT1G19310.1 protein_id AT1G19310.1p transcript_id AT1G19310.1
At1g19320	chr1:006679327	0.0	W/6679327-6679381,6679490-6680178	AT1G19320.1 CDS Pathogenesis-related thaumatin superfamily protein [TAIR10] CDS gene_syn F18O14.4, F18O14_4 go_component endomembrane system|GO:0012505||IEA go_process response to other organism|GO:0051707||ISS go_function molecular_function|GO:0003674||ND product Pathogenesis-related thaumatin superfamily protein note Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein 3 (TAIR:AT1G75030.1); Has 1611 Blast hits to 1588 proteins in 180 species: Archae - 0; Bacteria - 48; Metazoa - 52; Fungi - 78; Plants - 1416; Viruses - 5; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G19320.1p transcript_id AT1G19320.1 protein_id AT1G19320.1p transcript_id AT1G19320.1
At1g19330	chr1:006680824	0.0	C/6680824-6680940,6681040-6681108,6681206-6681268,6681361-6681500,6681683-6681809,6683078-6683290	AT1G19330.2 CDS histone deacetylase complex subunit [TAIR10] CDS gene_syn F18O14.5, F18O14_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G19330.2p transcript_id AT1G19330.2 protein_id AT1G19330.2p transcript_id AT1G19330.2
At1g19330	chr1:006680824	0.0	C/6680824-6680940,6681040-6681108,6681206-6681268,6681361-6681515,6681683-6681809,6683078-6683290	AT1G19330.1 CDS histone deacetylase complex subunit [TAIR10] CDS gene_syn F18O14.5, F18O14_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G19330.1p transcript_id AT1G19330.1 protein_id AT1G19330.1p transcript_id AT1G19330.1
At1g19330	chr1:006680824	0.0	C/6680824-6680940,6681040-6681108,6681206-6681271,6681361-6681515,6681683-6681809,6683078-6683290	AT1G19330.3 CDS histone deacetylase complex subunit [TAIR10] CDS gene_syn F18O14.5, F18O14_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1). protein_id AT1G19330.3p transcript_id AT1G19330.3 protein_id AT1G19330.3p transcript_id AT1G19330.3
At1g19340	chr1:006684798	0.0	W/6684798-6685293,6685372-6685502,6685618-6685651,6685810-6685885,6685974-6686151,6686245-6686334,6686420-6686519,6686659-6686798	AT1G19340.1 CDS Methyltransferase MT-A70 family protein [TAIR10] CDS gene_syn F18O14.6, F18O14_6 go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA go_process methylation|GO:0032259||IEA go_function nucleic acid binding|GO:0003676||IEA go_function methyltransferase activity|GO:0008168||IEA go_component cellular_component|GO:0005575||ND go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS product Methyltransferase MT-A70 family protein note Methyltransferase MT-A70 family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052), MT-A70 (InterPro:IPR007757); Has 622 Blast hits to 622 proteins in 244 species: Archae - 4; Bacteria - 240; Metazoa - 93; Fungi - 88; Plants - 72; Viruses - 2; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G19340.1p transcript_id AT1G19340.1 protein_id AT1G19340.1p transcript_id AT1G19340.1
At1g19350	chr1:006688680	0.0	W/6688680-6688738,6688834-6689104,6689422-6690165	AT1G19350.3 CDS Brassinosteroid signalling positive regulator (BZR1) family protein [TAIR10] CDS gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7 gene BES1 function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes go_component nucleus|GO:0005634|12427989|IDA go_component cytosol|GO:0005829|17681130|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|12007405|IGI go_function DNA binding|GO:0003677|20231470|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|15680330|IDA go_function protein binding|GO:0005515|12427989|IPI go_function protein binding|GO:0005515|15680330|IPI go_function transcription regulator activity|GO:0030528|11970900|TAS product Brassinosteroid signalling positive regulator (BZR1) family protein note BRI1-EMS-SUPPRESSOR 1 (BES1); CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19350.3p transcript_id AT1G19350.3 protein_id AT1G19350.3p transcript_id AT1G19350.3
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.1 CDS Brassinosteroid signalling positive regulator (BZR1) family protein [TAIR10] CDS gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7 gene BES1 function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes go_component nucleus|GO:0005634|12427989|IDA go_component cytosol|GO:0005829|17681130|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|12007405|IGI go_function DNA binding|GO:0003677|20231470|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|15680330|IDA go_function protein binding|GO:0005515|12427989|IPI go_function protein binding|GO:0005515|15680330|IPI go_function transcription regulator activity|GO:0030528|11970900|TAS product Brassinosteroid signalling positive regulator (BZR1) family protein note BRI1-EMS-SUPPRESSOR 1 (BES1); CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2); Has 2916 Blast hits to 477 proteins in 80 species: Archae - 0; Bacteria - 14; Metazoa - 122; Fungi - 71; Plants - 275; Viruses - 0; Other Eukaryotes - 2434 (source: NCBI BLink). protein_id AT1G19350.1p transcript_id AT1G19350.1 protein_id AT1G19350.1p transcript_id AT1G19350.1
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.4 CDS Brassinosteroid signalling positive regulator (BZR1) family protein [TAIR10] CDS gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7 gene BES1 function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes go_component nucleus|GO:0005634|12427989|IDA go_component cytosol|GO:0005829|17681130|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|12007405|IGI go_function DNA binding|GO:0003677|20231470|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|15680330|IDA go_function protein binding|GO:0005515|12427989|IPI go_function protein binding|GO:0005515|15680330|IPI go_function transcription regulator activity|GO:0030528|11970900|TAS product Brassinosteroid signalling positive regulator (BZR1) family protein note BRI1-EMS-SUPPRESSOR 1 (BES1); CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19350.4p transcript_id AT1G19350.4 protein_id AT1G19350.4p transcript_id AT1G19350.4
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.5 CDS Brassinosteroid signalling positive regulator (BZR1) family protein [TAIR10] CDS gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7 gene BES1 function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes go_component nucleus|GO:0005634|12427989|IDA go_component cytosol|GO:0005829|17681130|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|12007405|IGI go_function DNA binding|GO:0003677|20231470|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|15680330|IDA go_function protein binding|GO:0005515|12427989|IPI go_function protein binding|GO:0005515|15680330|IPI go_function transcription regulator activity|GO:0030528|11970900|TAS product Brassinosteroid signalling positive regulator (BZR1) family protein note BRI1-EMS-SUPPRESSOR 1 (BES1); CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19350.5p transcript_id AT1G19350.5 protein_id AT1G19350.5p transcript_id AT1G19350.5
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.6 CDS Brassinosteroid signalling positive regulator (BZR1) family protein [TAIR10] CDS gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7 gene BES1 function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes go_component nucleus|GO:0005634|12427989|IDA go_component cytosol|GO:0005829|17681130|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|12007405|IGI go_function DNA binding|GO:0003677|20231470|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|15680330|IDA go_function protein binding|GO:0005515|12427989|IPI go_function protein binding|GO:0005515|15680330|IPI go_function transcription regulator activity|GO:0030528|11970900|TAS product Brassinosteroid signalling positive regulator (BZR1) family protein note BRI1-EMS-SUPPRESSOR 1 (BES1); CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2); Has 2916 Blast hits to 477 proteins in 80 species: Archae - 0; Bacteria - 14; Metazoa - 122; Fungi - 71; Plants - 275; Viruses - 0; Other Eukaryotes - 2434 (source: NCBI BLink). protein_id AT1G19350.6p transcript_id AT1G19350.6 protein_id AT1G19350.6p transcript_id AT1G19350.6
At1g19360	chr1:006690672	0.0	C/6690672-6691787,6692041-6692211	AT1G19360.1 CDS Nucleotide-diphospho-sugar transferase family protein [TAIR10] CDS gene_syn F18O14.8, F18O14_8 go_component endoplasmic reticulum|GO:0005783||IEA product Nucleotide-diphospho-sugar transferase family protein note Nucleotide-diphospho-sugar transferase family protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1); Has 297 Blast hits to 291 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 280; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). protein_id AT1G19360.1p transcript_id AT1G19360.1 protein_id AT1G19360.1p transcript_id AT1G19360.1
AT1G19360	chr1:006690672	0.0	C/6690672-6691787,6692041-6692211	AT1G19360.2 AT1G19360.2 CDS Nucleotide-diphospho-sugar transferase family protein
At1g19370	chr1:006692904	0.0	C/6692904-6694721	AT1G19370.1 CDS membrane protein, putative [TAIR10] CDS gene_syn F18O14.9, F18O14_9 go_component endoplasmic reticulum|GO:0005783|16618929|IDA product unknown protein note unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G19370.1p transcript_id AT1G19370.1 protein_id AT1G19370.1p transcript_id AT1G19370.1
AT1G19370	chr1:006692904	0.0	C/6692904-6694721	AT1G19370.2 AT1G19370.2 CDS membrane protein, putative
At1g19371	chr1:006695420	0.0	C/6695420-6695609	AT1G19371.1 [TAIR10] miRNA gene_syn MIR169H, microRNA169H gene MIR169H function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG go_process cellular response to phosphate starvation|GO:0016036|19854858|IEP go_process gene silencing by miRNA|GO:0035195|15851028|IDA product MIR169H (microRNA169H); miRNA transcript_id AT1G19371.1
At1g19373	chr1:006697178	0.0	W/6697178-6697253	AT1G19373.1 [TAIR10] snoRNA gene_syn 52195.SNORNA00001 go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G19373.1
At1g19376	chr1:006697438	0.0	W/6697438-6697524	AT1G19376.1 [TAIR10] snoRNA gene_syn 52195.SNORNA00002 go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G19376.1
At1g19380	chr1:006698129	0.0	W/6698129-6698344,6698435-6698662	AT1G19380.1 CDS sugar, putative (DUF1195) [TAIR10] CDS gene_syn F18O14.10, F18O14_10 go_process biological_process|GO:0008150||ND product Protein of unknown function (DUF1195) note Protein of unknown function (DUF1195); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1195 (InterPro:IPR010608); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1195) (TAIR:AT4G36660.1); Has 67 Blast hits to 67 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19380.1p transcript_id AT1G19380.1 protein_id AT1G19380.1p transcript_id AT1G19380.1
At1g19390	chr1:006700772	0.0	C/6700772-6702000,6702102-6702224,6702354-6703368	AT1G19390.1 CDS Wall-associated kinase family protein [TAIR10] CDS gene_syn F18O14.11, F18O14_11 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function kinase activity|GO:0016301||ISS product Wall-associated kinase family protein note Wall-associated kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall-associated kinase, putative (TAIR:AT4G31100.1); Has 120805 Blast hits to 118813 proteins in 4422 species: Archae - 117; Bacteria - 13519; Metazoa - 45006; Fungi - 10268; Plants - 33776; Viruses - 486; Other Eukaryotes - 17633 (source: NCBI BLink). protein_id AT1G19390.1p transcript_id AT1G19390.1 protein_id AT1G19390.1p transcript_id AT1G19390.1
At1g19392	chr1:006708557	0.0	W/6708557-6709175	AT1G19392.1 [TAIR10] mRNA
At1g19392	chr1:006708557	0.0	W/6708557-6709175	AT1G19392 [TAIR10] TE pseudo note Transposable element gene, copia-like retrotransposon family, has a 3.5e-10 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)
At1g19394	chr1:006709773	0.0	W/6709773-6709783,6709889-6709958,6710468-6710605	AT1G19394.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19394.1p transcript_id AT1G19394.1 protein_id AT1G19394.1p transcript_id AT1G19394.1
At1g19396	chr1:006709873	0.0	W/6709873-6709958,6710115-6710223	AT1G19396.2 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein. protein_id AT1G19396.2p transcript_id AT1G19396.2 protein_id AT1G19396.2p transcript_id AT1G19396.2
At1g19396	chr1:006709873	0.0	W/6709873-6709958,6711414-6711480	AT1G19396.3 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein. protein_id AT1G19396.3p transcript_id AT1G19396.3 protein_id AT1G19396.3p transcript_id AT1G19396.3
At1g19396	chr1:006709873	0.0	W/6709873-6709958,6711420-6711480	AT1G19396.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein. protein_id AT1G19396.1p transcript_id AT1G19396.1 protein_id AT1G19396.1p transcript_id AT1G19396.1
At1g19397	chr1:006711040	0.0	W/6711040-6711336	AT1G19397.1 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19397.1p transcript_id AT1G19397.1 protein_id AT1G19397.1p transcript_id AT1G19397.1
At1g19400	chr1:006712222	0.0	C/6712222-6712437,6712981-6713676	AT1G19400.1 CDS Erythronate-4-phosphate dehydrogenase family protein [TAIR10] CDS gene_syn F18O14.16, F18O14_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Erythronate-4-phosphate dehydrogenase family protein note Erythronate-4-phosphate dehydrogenase family protein; BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G75180.3); Has 144 Blast hits to 144 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19400.1p transcript_id AT1G19400.1 protein_id AT1G19400.1p transcript_id AT1G19400.1
At1g19400	chr1:006712222	0.0	C/6712222-6712437,6712981-6713676	AT1G19400.2 CDS Erythronate-4-phosphate dehydrogenase family protein [TAIR10] CDS gene_syn F18O14.16, F18O14_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Erythronate-4-phosphate dehydrogenase family protein note Erythronate-4-phosphate dehydrogenase family protein; BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G75180.3); Has 144 Blast hits to 144 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19400.2p transcript_id AT1G19400.2 protein_id AT1G19400.2p transcript_id AT1G19400.2
AT1G19400	chr1:006712222	0.0	C/6712222-6712437,6712981-6713676	AT1G19400.3 AT1G19400.3 CDS Erythronate-4-phosphate dehydrogenase family protein
AT1G19400	chr1:006712948	0.0	C/6712948-6713676	AT1G19400.4 AT1G19400.4 CDS Erythronate-4-phosphate dehydrogenase family protein
At1g19410	chr1:006714492	0.0	C/6714492-6714632,6714789-6714920,6715001-6715138,6715228-6715268,6715507-6716249,6716327-6716439	AT1G19410.1 CDS FBD / Leucine Rich Repeat domains containing protein [TAIR10] CDS gene_syn F18O14.17, F18O14_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product FBD / Leucine Rich Repeat domains containing protein note FBD / Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT5G62970.1); Has 783 Blast hits to 763 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 783; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19410.1p transcript_id AT1G19410.1 protein_id AT1G19410.1p transcript_id AT1G19410.1
At1g19415	chr1:006719448	0.0	W/6719448-6720654	AT1G19415.1 [TAIR10] mRNA
At1g19415	chr1:006719448	0.0	W/6719448-6720654	AT1G19415 [TAIR10] TE pseudo gene_syn F18O14.19 note Transposable element gene, copia-like retrotransposon family, has a 6.1e-43 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
At1g19420	chr1:006721459	0.0	W/6721459-6722883	AT1G19420.1 CDS cysteine/histidine-rich C1 domain protein [TAIR10] pseudogene
At1g19430	chr1:006724669	0.0	C/6724669-6724867,6724955-6725149,6725241-6725483,6725581-6725755,6725923-6726015,6726097-6726367,6726456-6726605,6726685-6727533	AT1G19430.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F18O14.20, F18O14_20 go_component Golgi apparatus|GO:0005794|16618929|IDA go_process biological_process|GO:0008150||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G64030.1); Has 8058 Blast hits to 6201 proteins in 616 species: Archae - 19; Bacteria - 712; Metazoa - 2431; Fungi - 867; Plants - 1254; Viruses - 124; Other Eukaryotes - 2651 (source: NCBI BLink). protein_id AT1G19430.1p transcript_id AT1G19430.1 protein_id AT1G19430.1p transcript_id AT1G19430.1
AT1G19430	chr1:006724669	0.0	C/6724669-6724867,6724955-6725149,6725241-6725483,6725581-6725755,6725923-6726015,6726097-6726367,6726456-6726605,6726685-6727533	AT1G19430.3 AT1G19430.3 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
AT1G19430	chr1:006725204	0.0	C/6725204-6725483,6725581-6725755,6725923-6726015,6726097-6726367,6726456-6726605,6726685-6727533	AT1G19430.2 AT1G19430.2 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
At1g19440	chr1:006729119	0.0	W/6729119-6730669	AT1G19440.1 CDS 3-ketoacyl-CoA synthase 4 [TAIR10] CDS gene_syn 3-ketoacyl-CoA synthase 4, F18O14.21, F18O14_21, KCS4 gene KCS4 function Encodes KCS4, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). go_component membrane|GO:0016020||IEA go_function catalytic activity|GO:0003824||IEA go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_process very long-chain fatty acid metabolic process|GO:0000038|10330468|IDA go_process cuticle development|GO:0042335|10330468|IDA product 3-ketoacyl-CoA synthase 4 note 3-ketoacyl-CoA synthase 4 (KCS4); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 9 (TAIR:AT2G16280.1); Has 4090 Blast hits to 4073 proteins in 972 species: Archae - 0; Bacteria - 1351; Metazoa - 0; Fungi - 9; Plants - 2623; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). protein_id AT1G19440.1p transcript_id AT1G19440.1 protein_id AT1G19440.1p transcript_id AT1G19440.1
At1g19450	chr1:006731671	0.0	C/6731671-6731898,6731981-6732040,6732137-6732202,6732293-6732352,6732447-6732509,6732575-6732621,6732720-6732804,6732887-6732967,6733044-6733136,6733222-6733286,6733395-6733470,6733566-6733631,6733721-6733786,6733875-6733934,6734050-6734139,6734251-6734313,6734436-6734633	AT1G19450.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn F18O14.22, F18O14_22 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G75220.1); Has 32354 Blast hits to 31683 proteins in 2302 species: Archae - 652; Bacteria - 16202; Metazoa - 5205; Fungi - 6407; Plants - 2489; Viruses - 2; Other Eukaryotes - 1397 (source: NCBI BLink). protein_id AT1G19450.1p transcript_id AT1G19450.1 protein_id AT1G19450.1p transcript_id AT1G19450.1
At1g19460	chr1:006738484	0.0	W/6738484-6739734	AT1G19460.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F18O14.24, F18O14_24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19470.1); Has 1605 Blast hits to 1542 proteins in 141 species: Archae - 4; Bacteria - 96; Metazoa - 403; Fungi - 4; Plants - 1026; Viruses - 35; Other Eukaryotes - 37 (source: NCBI BLink). protein_id AT1G19460.1p transcript_id AT1G19460.1 protein_id AT1G19460.1p transcript_id AT1G19460.1
At1g19464	chr1:006740500	0.0	W/6740500-6740591	AT1G19464.1 [TAIR10] miRNA gene_syn MIR864A, microRNA864A gene MIR864A function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCAGGUAUGAUUGACUUCAAA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MIR864A (microRNA864A); miRNA transcript_id AT1G19464.1
At1g19470	chr1:006741296	0.0	W/6741296-6742534	AT1G19470.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F18O14.42 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19460.1); Has 1608 Blast hits to 1548 proteins in 136 species: Archae - 0; Bacteria - 86; Metazoa - 423; Fungi - 8; Plants - 1021; Viruses - 35; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G19470.1p transcript_id AT1G19470.1 protein_id AT1G19470.1p transcript_id AT1G19470.1
At1g19480	chr1:006744520	0.0	W/6744520-6745649,6746126-6746144	AT1G19480.1 CDS DNA glycosylase superfamily protein [TAIR10] CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62; Bacteria - 2357; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.1p transcript_id AT1G19480.1 protein_id AT1G19480.1p transcript_id AT1G19480.1
At1g19480	chr1:006744520	0.0	W/6744520-6745653	AT1G19480.2 CDS DNA glycosylase superfamily protein [TAIR10] CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4597 Blast hits to 4597 proteins in 1093 species: Archae - 62; Bacteria - 2351; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.2p transcript_id AT1G19480.2 protein_id AT1G19480.2p transcript_id AT1G19480.2
At1g19485	chr1:006747167	0.0	W/6747167-6747321,6747481-6747607,6747722-6747765,6748070-6748163,6748248-6749002,6749161-6749292,6749458-6749530,6749674-6749713,6749826-6749898,6749984-6750049,6750192-6750269,6750363-6750535,6750623-6750669,6750759-6750990,6751085-6751443	AT1G19485.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||IEA go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), A.T hook-like (InterPro:IPR020478), WD40 repeat (InterPro:IPR001680), HMG-I/HMG-Y, DNA-binding, conserved site (InterPro:IPR000637), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 323 Blast hits to 302 proteins in 88 species: Archae - 0; Bacteria - 11; Metazoa - 131; Fungi - 67; Plants - 67; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). protein_id AT1G19485.1p transcript_id AT1G19485.1 protein_id AT1G19485.1p transcript_id AT1G19485.1
At1g19485	chr1:006747167	0.0	W/6747167-6747321,6747481-6747607,6747722-6747765,6748070-6748163,6748248-6749002,6749161-6749292,6749458-6749530,6749674-6749713,6749826-6749898,6749984-6750049,6750192-6750269,6750363-6750535,6750623-6750669,6750759-6750990,6751085-6751443	AT1G19485.2 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||IEA go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), WD40 repeat (InterPro:IPR001680), HMG-I/HMG-Y, DNA-binding, conserved site (InterPro:IPR000637), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781). protein_id AT1G19485.2p transcript_id AT1G19485.2 protein_id AT1G19485.2p transcript_id AT1G19485.2
At1g19490	chr1:006751953	0.0	C/6751953-6752696,6752782-6752847,6752931-6752996,6753103-6753180,6753271-6753450,6753678-6753959	AT1G19490.1 CDS Basic-leucine zipper (bZIP) transcription factor family protein [TAIR10] CDS gene_syn F18O14.41 go_component chloroplast|GO:0009507||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS product Basic-leucine zipper (bZIP) transcription factor family protein note Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 16 (TAIR:AT2G35530.1); Has 967 Blast hits to 951 proteins in 159 species: Archae - 2; Bacteria - 7; Metazoa - 181; Fungi - 81; Plants - 591; Viruses - 1; Other Eukaryotes - 104 (source: NCBI BLink). protein_id AT1G19490.1p transcript_id AT1G19490.1 protein_id AT1G19490.1p transcript_id AT1G19490.1
At1g19500	chr1:006754952	0.0	C/6754952-6754973,6755316-6755536	AT1G19500.1 CDS hypothetical protein [TAIR10] CDS gene_syn F18O14.44 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35765.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19500.1p transcript_id AT1G19500.1 protein_id AT1G19500.1p transcript_id AT1G19500.1
At1g19510	chr1:006756483	0.0	C/6756483-6756510,6757016-6757290	AT1G19510.1 CDS RAD-like 5 [TAIR10] CDS gene_syn ATRL5, F18O14.26, F18O14_26, RAD-like 5, RADIALIS-LIKE SANT/MYB 4, RL5, RSM4 gene RL5 go_function DNA binding|GO:0003677||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product RAD-like 5 note RAD-like 5 (RL5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: RAD-like 6 (TAIR:AT1G75250.2); Has 606 Blast hits to 606 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 0; Plants - 454; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G19510.1p transcript_id AT1G19510.1 protein_id AT1G19510.1p transcript_id AT1G19510.1
At1g19520	chr1:006760032	0.0	W/6760032-6761138,6761511-6762581	AT1G19520.1 CDS pentatricopeptide (PPR) repeat-containing protein [TAIR10] CDS gene_syn F18O14.40, NFD5, NUCLEAR FUSION DEFECTIVE 5 gene NFD5 product pentatricopeptide (PPR) repeat-containing protein note NUCLEAR FUSION DEFECTIVE 5 (NFD5); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19520.1p transcript_id AT1G19520.1 protein_id AT1G19520.1p transcript_id AT1G19520.1
At1g19520	chr1:006760032	0.0	W/6760032-6761150	AT1G19520.2 CDS pentatricopeptide (PPR) repeat-containing protein [TAIR10] CDS gene_syn F18O14.40, NFD5, NUCLEAR FUSION DEFECTIVE 5 gene NFD5 product pentatricopeptide (PPR) repeat-containing protein note NUCLEAR FUSION DEFECTIVE 5 (NFD5); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages. protein_id AT1G19520.2p transcript_id AT1G19520.2 protein_id AT1G19520.2p transcript_id AT1G19520.2
At1g19530	chr1:006763976	0.0	W/6763976-6764027,6764145-6764254,6764410-6764486,6764572-6764686	AT1G19530.1 CDS DNA polymerase epsilon catalytic subunit A, putative [TAIR10] CDS gene_syn F18O14.29, F18O14_29 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_process anaerobic respiration|GO:0009061|20097791|IEP go_process anaerobic respiration|GO:0009061|20097791|IMP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19530.1p transcript_id AT1G19530.1 protein_id AT1G19530.1p transcript_id AT1G19530.1
AT1G19530	chr1:006763976	0.0	W/6763976-6764027,6764145-6764254,6764410-6764486,6764572-6764686	AT1G19530.2 AT1G19530.2 CDS DNA polymerase epsilon catalytic subunit A, putative
At1g19540	chr1:006765713	0.0	W/6765713-6765889,6766212-6766352,6766445-6766688,6766775-6766978,6767081-6767247	AT1G19540.1 CDS NmrA-like negative transcriptional regulator family protein [TAIR10] CDS gene_syn F18O14.30, F18O14_30 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND product NmrA-like negative transcriptional regulator family protein note NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 2081 Blast hits to 2077 proteins in 492 species: Archae - 4; Bacteria - 817; Metazoa - 4; Fungi - 543; Plants - 557; Viruses - 7; Other Eukaryotes - 149 (source: NCBI BLink). protein_id AT1G19540.1p transcript_id AT1G19540.1 protein_id AT1G19540.1p transcript_id AT1G19540.1
AT1G19540	chr1:006765713	0.0	W/6765713-6765889,6766212-6766352,6766445-6766688,6766775-6766998	AT1G19540.2 AT1G19540.2 CDS NmrA-like negative transcriptional regulator family protein
At1g19550	chr1:006767451	0.0	C/6767451-6767710,6767782-6767983	AT1G19550.1 CDS Glutathione S-transferase family protein [TAIR10] CDS gene_syn F18O14.31, F18O14_31 go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS product Glutathione S-transferase family protein note Glutathione S-transferase family protein; FUNCTIONS IN: glutathione dehydrogenase (ascorbate) activity; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase (TAIR:AT1G19570.2); Has 503 Blast hits to 503 proteins in 149 species: Archae - 0; Bacteria - 48; Metazoa - 190; Fungi - 2; Plants - 245; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). protein_id AT1G19550.1p transcript_id AT1G19550.1 protein_id AT1G19550.1p transcript_id AT1G19550.1
At1g19560	chr1:006768814	0.0	C/6768814-6770752	AT1G19560.1 [TAIR10] pseudogene
AT1G19555	chr1:006772051	0.0	W/6772051-6772182,6772202-6772249,6772449-6772628,6772667-6772926,6772933-6773007,6773050-6773251	AT1G19555.1 AT1G19555.1 CDS isoflavone reductase-like protein, putative
AT1G19565	chr1:006772084	0.0	C/6772084-6772380,6772444-6772646,6772804-6772846	AT1G19565.2 AT1G19565.2 CDS hypothetical protein
AT1G19565	chr1:006772087	0.0	C/6772087-6772380,6772444-6772646,6772879-6772970,6773079-6773131	AT1G19565.1 AT1G19565.1 CDS hypothetical protein
At1g19570	chr1:006773462	0.0	C/6773462-6773954,6774141-6774231,6774356-6774413	AT1G19570.1 CDS dehydroascorbate reductase [TAIR10] CDS gene_syn ATDHAR1, DEHYDROASCORBATE REDUCTASE 5, DHAR1, DHAR5, F14P1.9, F14P1_9, dehydroascorbate reductase gene DHAR1 function Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component apoplast|GO:0048046|18538804|IDA go_function copper ion binding|GO:0005507|16526091|IDA go_component mitochondrion|GO:0005739|12954611|IDA go_component peroxisome|GO:0005777|19329564|IDA go_process response to symbiotic fungus|GO:0009610|19386380|IEP go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP go_process response to zinc ion|GO:0010043|19880396|IEP go_process response to ozone|GO:0010193|16262714|IEP go_process protein amino acid glutathionylation|GO:0010731|12077129|IDA go_process regulation of symbiosis, encompassing mutualism through parasitism|GO:0043903|19386380|IMP go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174|12077129|IDA go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS product dehydroascorbate reductase note dehydroascorbate reductase (DHAR1); FUNCTIONS IN: copper ion binding, glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase 2 (TAIR:AT1G75270.1); Has 5234 Blast hits to 5161 proteins in 1116 species: Archae - 0; Bacteria - 2090; Metazoa - 1076; Fungi - 186; Plants - 896; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink). protein_id AT1G19570.1p transcript_id AT1G19570.1 protein_id AT1G19570.1p transcript_id AT1G19570.1
At1g19580	chr1:006774937	0.0	W/6774937-6775051,6775306-6775449,6776015-6776140,6776243-6776394,6776564-6776645,6776802-6776845	AT1G19580.2 CDS gamma carbonic anhydrase 1 [TAIR10] CDS gene_syn GAMMA CA1, gamma carbonic anhydrase 1 gene GAMMA CA1 function Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. go_component mitochondrion|GO:0005739|15821992|IDA go_component mitochondrial respiratory chain complex I|GO:0005747|20197505|IDA go_component mitochondrial membrane|GO:0031966|16407270|IDA go_component respiratory chain complex I|GO:0045271|16407270|IDA go_component respiratory chain complex I|GO:0045271|18189341|IDA go_process photorespiration|GO:0009853|16407270|TAS go_function carbonate dehydratase activity|GO:0004089|16407270|ISS product gamma carbonic anhydrase 1 note gamma carbonic anhydrase 1 (GAMMA CA1); CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 3 (TAIR:AT5G66510.1). protein_id AT1G19580.2p transcript_id AT1G19580.2 protein_id AT1G19580.2p transcript_id AT1G19580.2
At1g19580	chr1:006774937	0.0	W/6774937-6775051,6775306-6775449,6776015-6776140,6776243-6776394,6776802-6777092	AT1G19580.1 CDS gamma carbonic anhydrase 1 [TAIR10] CDS gene_syn GAMMA CA1, gamma carbonic anhydrase 1 gene GAMMA CA1 function Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. go_component mitochondrion|GO:0005739|15821992|IDA go_component mitochondrial respiratory chain complex I|GO:0005747|20197505|IDA go_component mitochondrial membrane|GO:0031966|16407270|IDA go_component respiratory chain complex I|GO:0045271|16407270|IDA go_component respiratory chain complex I|GO:0045271|18189341|IDA go_process photorespiration|GO:0009853|16407270|TAS go_function carbonate dehydratase activity|GO:0004089|16407270|ISS product gamma carbonic anhydrase 1 note gamma carbonic anhydrase 1 (GAMMA CA1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 10894 Blast hits to 10839 proteins in 2210 species: Archae - 265; Bacteria - 7962; Metazoa - 13; Fungi - 83; Plants - 197; Viruses - 0; Other Eukaryotes - 2374 (source: NCBI BLink). protein_id AT1G19580.1p transcript_id AT1G19580.1 protein_id AT1G19580.1p transcript_id AT1G19580.1
At1g19600	chr1:006779085	0.0	W/6779085-6779225,6779382-6779630,6779709-6779780,6779869-6779907,6780014-6780121,6780217-6780314,6780419-6780530,6780650-6780898	AT1G19600.1 CDS pfkB-like carbohydrate kinase family protein [TAIR10] CDS gene_syn F14P1.7, F14P1_7 go_process D-ribose catabolic process|GO:0019303||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product pfkB-like carbohydrate kinase family protein note pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT4G27600.1); Has 11746 Blast hits to 11745 proteins in 2087 species: Archae - 257; Bacteria - 7533; Metazoa - 331; Fungi - 90; Plants - 444; Viruses - 0; Other Eukaryotes - 3091 (source: NCBI BLink). protein_id AT1G19600.1p transcript_id AT1G19600.1 protein_id AT1G19600.1p transcript_id AT1G19600.1
At1g19610	chr1:006781674	0.0	C/6781674-6781846,6781961-6782024	AT1G19610.1 CDS Arabidopsis defensin-like protein [TAIR10] CDS gene_syn F14P1.6, F14P1_6, LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 gene PDF1.4 function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. go_component endomembrane system|GO:0012505||IEA go_process defense response|GO:0006952|18674922|ISS go_process defense response|GO:0006952||ISS go_function molecular_function|GO:0003674||ND product Arabidopsis defensin-like protein note PDF1.4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Low-molecular-weight cysteine-rich family (InterPro:IPR020191), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.3 (TAIR:AT2G26010.1); Has 153 Blast hits to 153 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G19610.1p transcript_id AT1G19610.1 protein_id AT1G19610.1p transcript_id AT1G19610.1
At1g19620	chr1:006784020	0.0	W/6784020-6784153,6784256-6785075	AT1G19620.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F14P1.5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 44 Blast hits to 24 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 22; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G19620.1p transcript_id AT1G19620.1 protein_id AT1G19620.1p transcript_id AT1G19620.1
At1g19630	chr1:006785427	0.0	C/6785427-6785523,6785610-6785728,6785825-6785931,6786044-6786122,6786205-6786291,6786463-6786542,6786715-6786892,6787001-6787150,6787360-6787681,6787756-6787967	AT1G19630.1 CDS cytochrome P450, family 722, subfamily A, polypeptide 1 [TAIR10] CDS gene_syn cytochrome P450, family 722, subfamily A, polypeptide 1, CYP722A1, F14P1.4, F14P1_4 gene CYP722A1 function member of CYP722A go_component endomembrane system|GO:0012505||IEA go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 722, subfamily A, polypeptide 1 note cytochrome P450, family 722, subfamily A, polypeptide 1 (CYP722A1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 707, subfamily A, polypeptide 1 (TAIR:AT4G19230.1); Has 35375 Blast hits to 35292 proteins in 1804 species: Archae - 63; Bacteria - 6821; Metazoa - 11890; Fungi - 5888; Plants - 8751; Viruses - 3; Other Eukaryotes - 1959 (source: NCBI BLink). protein_id AT1G19630.1p transcript_id AT1G19630.1 protein_id AT1G19630.1p transcript_id AT1G19630.1
AT1G19630	chr1:006785588	0.0	C/6785588-6785728,6785825-6785931,6786044-6786122,6786205-6786291,6786463-6786542,6786715-6786892,6787001-6787150,6787360-6787681,6787756-6787967	AT1G19630.3 AT1G19630.3 CDS cytochrome P450, family 722, subfamily A, polypeptide 1
AT1G19630	chr1:006785735	0.0	C/6785735-6785931,6786044-6786122,6786205-6786291,6786463-6786542,6786715-6786892,6787001-6787150,6787360-6787681,6787756-6787967	AT1G19630.2 AT1G19630.2 CDS cytochrome P450, family 722, subfamily A, polypeptide 1
At1g19640	chr1:006789166	0.0	C/6789166-6789546,6790285-6790572,6791068-6791493,6791634-6791708	AT1G19640.1 CDS jasmonic acid carboxyl methyltransferase [TAIR10] CDS gene_syn F14P1.3, F14P1_3, JMT, jasmonic acid carboxyl methyltransferase gene JMT function Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment. go_component cytoplasm|GO:0005737|11287667|NAS go_process response to wounding|GO:0009611|11287667|IEP go_process jasmonic acid metabolic process|GO:0009694|11287667|IDA go_process jasmonic acid biosynthetic process|GO:0009695|11287667|IDA go_process jasmonic acid mediated signaling pathway|GO:0009867|11287667|IMP go_function jasmonate O-methyltransferase activity|GO:0030795|11287667|IDA go_function jasmonate O-methyltransferase activity|GO:0030795|11287667|IMP product jasmonic acid carboxyl methyltransferase note jasmonic acid carboxyl methyltransferase (JMT); CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G11480.1); Has 890 Blast hits to 871 proteins in 121 species: Archae - 0; Bacteria - 61; Metazoa - 9; Fungi - 5; Plants - 740; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). protein_id AT1G19640.1p transcript_id AT1G19640.1 protein_id AT1G19640.1p transcript_id AT1G19640.1
At1g19650	chr1:006796431	0.0	C/6796431-6796451,6796529-6796603,6796700-6797091,6797197-6797311,6797410-6797523,6797617-6797709,6797824-6797923,6798014-6798063,6798144-6798245,6798327-6798404,6798499-6798765,6798854-6798953,6799099-6799384,6799504-6799537	AT1G19650.1 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn F14P1.2, F14P1_2 go_component plasma membrane|GO:0005886|17317660|IDA go_process transport|GO:0006810||IEA go_function transporter activity|GO:0005215||IEA go_process transport|GO:0006810||ISS go_function phosphatidylinositol transporter activity|GO:0008526||ISS product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G75370.1); Has 2627 Blast hits to 2615 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 801; Fungi - 541; Plants - 877; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink). protein_id AT1G19650.1p transcript_id AT1G19650.1 protein_id AT1G19650.1p transcript_id AT1G19650.1
At1g19650	chr1:006796431	0.0	C/6796431-6796451,6796529-6796603,6796700-6797091,6797197-6797311,6797410-6797523,6797617-6797709,6797824-6797923,6798014-6798063,6798144-6798245,6798327-6798404,6798499-6798765,6798854-6799057	AT1G19650.2 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn F14P1.2, F14P1_2 go_component plasma membrane|GO:0005886|17317660|IDA go_process transport|GO:0006810||IEA go_function transporter activity|GO:0005215||IEA go_process transport|GO:0006810||ISS go_function phosphatidylinositol transporter activity|GO:0008526||ISS product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G75370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19650.2p transcript_id AT1G19650.2 protein_id AT1G19650.2p transcript_id AT1G19650.2
AT1G19650	chr1:006797059	0.0	C/6797059-6797091,6797197-6797268,6797410-6797523,6797617-6797709,6797824-6797923,6798014-6798063,6798144-6798245,6798327-6798404,6798499-6798765,6798854-6798953,6799099-6799384,6799504-6799537	AT1G19650.3 AT1G19650.3 CDS Sec14p-like phosphatidylinositol transfer family protein
At1g19660	chr1:006800361	0.0	C/6800361-6800422,6800552-6800643,6800733-6800851,6800989-6801063,6801201-6801266,6801369-6801425,6801523-6801572,6801672-6801842,6801943-6802240	AT1G19660.1 CDS Wound-responsive family protein [TAIR10] CDS gene_syn F14P1.1, F14P1_1 go_process nucleotide-excision repair|GO:0006289||IEA go_function DNA binding|GO:0003677||IEA go_function nuclease activity|GO:0004518||IEA go_process response to wounding|GO:0009611||ISS product Wound-responsive family protein note Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to wounding, nucleotide-excision repair; EXPRESSED IN: ovule; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3); Has 886 Blast hits to 886 proteins in 308 species: Archae - 44; Bacteria - 551; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink). protein_id AT1G19660.1p transcript_id AT1G19660.1 protein_id AT1G19660.1p transcript_id AT1G19660.1
At1g19660	chr1:006800361	0.0	C/6800361-6800422,6800552-6800643,6800733-6800851,6800989-6801063,6801201-6801266,6801369-6801425,6801523-6801572,6801672-6801842,6801943-6802240	AT1G19660.2 CDS Wound-responsive family protein [TAIR10] CDS gene_syn F14P1.1, F14P1_1 go_process nucleotide-excision repair|GO:0006289||IEA go_function DNA binding|GO:0003677||IEA go_function nuclease activity|GO:0004518||IEA go_process response to wounding|GO:0009611||ISS product Wound-responsive family protein note Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to wounding, nucleotide-excision repair; EXPRESSED IN: ovule; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19660.2p transcript_id AT1G19660.2 protein_id AT1G19660.2p transcript_id AT1G19660.2
AT1G19660	chr1:006800490	0.0	C/6800490-6800643,6800733-6800851,6800989-6801063,6801201-6801266,6801369-6801425,6801523-6801572,6801672-6801842,6801943-6802240	AT1G19660.3 AT1G19660.3 CDS Wound-responsive family protein
At1g19670	chr1:006803796	0.0	C/6803796-6804500,6804654-6804923	AT1G19670.1 CDS chlorophyllase 1 [TAIR10] CDS gene_syn ATCLH1, ATHCOR1, CHLOROPHYLLASE, CLH1, CORI1, CORONATINE-INDUCED PROTEIN 1, F6F9.28, F6F9_28, chlorophyllase 1 gene CLH1 function Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. go_component vacuole|GO:0005773|15539469|IDA go_process response to stress|GO:0006950|15598807|IMP go_process response to jasmonic acid stimulus|GO:0009753|10611389|IEP go_process jasmonic acid mediated signaling pathway|GO:0009867|9501136|IGI go_process chlorophyll catabolic process|GO:0015996|10611389|IDA go_function chlorophyllase activity|GO:0047746|10611389|IDA product chlorophyllase 1 note chlorophyllase 1 (CLH1); FUNCTIONS IN: chlorophyllase activity; INVOLVED IN: response to jasmonic acid stimulus, chlorophyll catabolic process, jasmonic acid mediated signaling pathway, response to stress; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyllase-like (InterPro:IPR010821), Chlorophyllase, chloroplast (InterPro:IPR017395); BEST Arabidopsis thaliana protein match is: chlorophyllase 2 (TAIR:AT5G43860.1); Has 196 Blast hits to 192 proteins in 66 species: Archae - 2; Bacteria - 62; Metazoa - 6; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G19670.1p transcript_id AT1G19670.1 protein_id AT1G19670.1p transcript_id AT1G19670.1
At1g19680	chr1:006805909	0.0	W/6805909-6806239,6806506-6806537,6806619-6807569,6807662-6807682	AT1G19680.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F14P1.21, F14P1_21 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function zinc ion binding|GO:0008270||IEA product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G75400.1); Has 470 Blast hits to 325 proteins in 82 species: Archae - 0; Bacteria - 69; Metazoa - 71; Fungi - 25; Plants - 165; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). protein_id AT1G19680.1p transcript_id AT1G19680.1 protein_id AT1G19680.1p transcript_id AT1G19680.1
At1g19690	chr1:006807925	0.0	C/6807925-6808192,6808278-6808415,6808498-6808632,6808702-6808741,6808832-6808910,6808999-6809077,6809158-6809250,6809336-6809562	AT1G19690.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F14P1.35, F14P1_35 go_component chloroplast|GO:0009507|18431481|IDA go_process metabolic process|GO:0008152||IEA go_process cellular metabolic process|GO:0044237||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function coenzyme binding|GO:0050662||IEA product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 3422 Blast hits to 3422 proteins in 1044 species: Archae - 54; Bacteria - 2233; Metazoa - 3; Fungi - 5; Plants - 67; Viruses - 4; Other Eukaryotes - 1056 (source: NCBI BLink). protein_id AT1G19690.1p transcript_id AT1G19690.1 protein_id AT1G19690.1p transcript_id AT1G19690.1
At1g19700	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.1 CDS BEL1-like homeodomain 10 [TAIR10] CDS gene_syn BEL1-LIKE HOMEODOMAIN 10, BEL1-like homeodomain 10, BEL10, BLH10, F14P1.20, F14P1_20 gene BEL10 function Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_process regulation of transcription|GO:0045449||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product BEL1-like homeodomain 10 note BEL1-like homeodomain 10 (BEL10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 3 (TAIR:AT1G75410.2); Has 5190 Blast hits to 5190 proteins in 343 species: Archae - 0; Bacteria - 4; Metazoa - 2115; Fungi - 347; Plants - 2475; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink). protein_id AT1G19700.1p transcript_id AT1G19700.1 protein_id AT1G19700.1p transcript_id AT1G19700.1
At1g19700	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.2 CDS BEL1-like homeodomain 10 [TAIR10] CDS gene_syn BEL1-LIKE HOMEODOMAIN 10, BEL1-like homeodomain 10, BEL10, BLH10, F14P1.20, F14P1_20 gene BEL10 function Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_process regulation of transcription|GO:0045449||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product BEL1-like homeodomain 10 note BEL1-like homeodomain 10 (BEL10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 3 (TAIR:AT1G75410.2); Has 5190 Blast hits to 5190 proteins in 343 species: Archae - 0; Bacteria - 4; Metazoa - 2115; Fungi - 347; Plants - 2475; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink). protein_id AT1G19700.2p transcript_id AT1G19700.2 protein_id AT1G19700.2p transcript_id AT1G19700.2
At1g19700	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.3 CDS BEL1-like homeodomain 10 [TAIR10] CDS gene_syn BEL1-LIKE HOMEODOMAIN 10, BEL1-like homeodomain 10, BEL10, BLH10, F14P1.20, F14P1_20 gene BEL10 function Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_process regulation of transcription|GO:0045449||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product BEL1-like homeodomain 10 note BEL1-like homeodomain 10 (BEL10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 3 (TAIR:AT1G75410.2). protein_id AT1G19700.3p transcript_id AT1G19700.3 protein_id AT1G19700.3p transcript_id AT1G19700.3
AT1G19700	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.4 AT1G19700.4 CDS BEL1-like homeodomain 10
AT1G19700	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.5 AT1G19700.5 CDS BEL1-like homeodomain 10
At1g19710	chr1:006814920	0.0	W/6814920-6815187,6815257-6815399,6815484-6815755,6815848-6816002,6816115-6816716	AT1G19710.1 CDS UDP-Glycosyltransferase superfamily protein [TAIR10] CDS gene_syn F14P1.19, F14P1_19 go_process biosynthetic process|GO:0009058||IEA go_component Golgi apparatus|GO:0005794|16618929|IDA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-Glycosyltransferase superfamily protein note UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G75420.1); Has 6148 Blast hits to 6144 proteins in 1382 species: Archae - 171; Bacteria - 4108; Metazoa - 97; Fungi - 39; Plants - 107; Viruses - 0; Other Eukaryotes - 1626 (source: NCBI BLink). protein_id AT1G19710.1p transcript_id AT1G19710.1 protein_id AT1G19710.1p transcript_id AT1G19710.1
At1g19715	chr1:006816934	0.0	C/6816934-6817233,6817324-6817548,6817795-6818169,6818250-6818483,6818582-6819028,6819110-6819244	AT1G19715.2 CDS Mannose-binding lectin superfamily protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Mannose-binding lectin superfamily protein note Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19715.2p transcript_id AT1G19715.2 protein_id AT1G19715.2p transcript_id AT1G19715.2
At1g19715	chr1:006816934	0.0	C/6816934-6817233,6817324-6817548,6817795-6818169,6818250-6818483,6818582-6819028,6819110-6819313,6819412-6819432	AT1G19715.3 CDS Mannose-binding lectin superfamily protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Mannose-binding lectin superfamily protein note Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1). protein_id AT1G19715.3p transcript_id AT1G19715.3 protein_id AT1G19715.3p transcript_id AT1G19715.3
At1g19715	chr1:006816934	0.0	C/6816934-6817233,6817324-6817548,6817795-6818169,6818250-6818483,6818582-6819028,6819110-6819313,6819430-6819432	AT1G19715.1 CDS Mannose-binding lectin superfamily protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Mannose-binding lectin superfamily protein note Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1); Has 3242 Blast hits to 933 proteins in 57 species: Archae - 0; Bacteria - 14; Metazoa - 135; Fungi - 2; Plants - 3082; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G19715.1p transcript_id AT1G19715.1 protein_id AT1G19715.1p transcript_id AT1G19715.1
At1g19720	chr1:006819926	0.0	C/6819926-6822610	AT1G19720.1 CDS Pentatricopeptide repeat (PPR-like) superfamily protein [TAIR10] CDS gene_syn F14P1.33, F14P1_33 go_component chloroplast|GO:0009507|18431481|IDA go_component nucleus|GO:0005634|15610358|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR-like) superfamily protein note Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 61333 Blast hits to 15549 proteins in 316 species: Archae - 3; Bacteria - 46; Metazoa - 404; Fungi - 515; Plants - 59134; Viruses - 0; Other Eukaryotes - 1231 (source: NCBI BLink). protein_id AT1G19720.1p transcript_id AT1G19720.1 protein_id AT1G19720.1p transcript_id AT1G19720.1
At1g19730	chr1:006823163	0.0	C/6823163-6823306,6823407-6823532,6823931-6824020	AT1G19730.1 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn ATH4, ATTRX4, F14P1.32, F14P1_32, THIOREDOXIN, thioredoxin H-type 4 gene ATTRX4 function encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. go_process cell redox homeostasis|GO:0045454||IEA go_component cytosol|GO:0005829|7777559|TAS go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|7777559|IDA product Thioredoxin superfamily protein note ATTRX4; FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 5 (TAIR:AT1G45145.1); Has 19449 Blast hits to 19098 proteins in 2963 species: Archae - 279; Bacteria - 10803; Metazoa - 1859; Fungi - 973; Plants - 1850; Viruses - 7; Other Eukaryotes - 3678 (source: NCBI BLink). protein_id AT1G19730.1p transcript_id AT1G19730.1 protein_id AT1G19730.1p transcript_id AT1G19730.1
At1g19740	chr1:006824396	0.0	W/6824396-6825232	AT1G19740.1 CDS ATP-dependent protease La (LON) domain protein [TAIR10] CDS gene_syn F14P1.10, F14P1_10 go_component chloroplast|GO:0009507|18431481|IDA go_process proteolysis|GO:0006508||IEA go_function ATP-dependent peptidase activity|GO:0004176||IEA go_function ATP-dependent peptidase activity|GO:0004176||ISS product ATP-dependent protease La (LON) domain protein note ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 3644 Blast hits to 3644 proteins in 880 species: Archae - 0; Bacteria - 1707; Metazoa - 175; Fungi - 37; Plants - 117; Viruses - 0; Other Eukaryotes - 1608 (source: NCBI BLink). protein_id AT1G19740.1p transcript_id AT1G19740.1 protein_id AT1G19740.1p transcript_id AT1G19740.1
At1g19750	chr1:006826997	0.0	W/6826997-6827146,6827317-6827577,6827666-6827825,6828006-6828187,6828917-6829154,6829406-6829560,6829649-6829738,6829847-6829918,6830017-6830061	AT1G19750.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn F14P1.15, F14P1_15 go_component heterotrimeric G-protein complex|GO:0005834||ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G27840.1); Has 24643 Blast hits to 15569 proteins in 571 species: Archae - 22; Bacteria - 3931; Metazoa - 8671; Fungi - 5946; Plants - 3099; Viruses - 0; Other Eukaryotes - 2974 (source: NCBI BLink). protein_id AT1G19750.1p transcript_id AT1G19750.1 protein_id AT1G19750.1p transcript_id AT1G19750.1
AT1G19750	chr1:006827518	0.0	W/6827518-6827577,6827666-6827825,6828006-6828187,6828917-6829154,6829406-6829560,6829649-6829738,6829847-6829918,6830017-6830061	AT1G19750.2 AT1G19750.2 CDS Transducin/WD40 repeat-like superfamily protein
At1g19770	chr1:006832426	0.0	W/6832426-6832468,6832564-6833702	AT1G19770.1 CDS purine permease 14 [TAIR10] CDS gene_syn ATPUP14, F14P1.13, F14P1_13, PUP14, purine permease 14 gene PUP14 function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. go_component membrane|GO:0016020|10662864|TAS go_process purine transport|GO:0006863|10662864|TAS go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS go_function purine transmembrane transporter activity|GO:0005345||ISS product purine permease 14 note purine permease 14 (PUP14); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 15 (TAIR:AT1G75470.1); Has 334 Blast hits to 326 proteins in 20 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 321; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G19770.1p transcript_id AT1G19770.1 protein_id AT1G19770.1p transcript_id AT1G19770.1
At1g19780	chr1:006833885	0.0	C/6833885-6834631,6834711-6835059,6835137-6835450,6835547-6835759,6835842-6836433,6836532-6836578	AT1G19780.1 CDS cyclic nucleotide gated channel 8 [TAIR10] CDS gene_syn ATCNGC8, CNGC8, F14P1.12, F14P1_12, cyclic nucleotide gated channel 8 gene CNGC8 function member of Cyclic nucleotide gated channel family go_component membrane|GO:0016020||IEA go_process ion transport|GO:0006811||IEA go_process transmembrane transport|GO:0055085||IEA go_function ion channel activity|GO:0005216||ISS go_function calmodulin binding|GO:0005516|11782485|ISS go_function cyclic nucleotide binding|GO:0030551||ISS product cyclic nucleotide gated channel 8 note cyclic nucleotide gated channel 8 (CNGC8); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 7 (TAIR:AT1G15990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G19780.1p transcript_id AT1G19780.1 protein_id AT1G19780.1p transcript_id AT1G19780.1
AT1G19780	chr1:006833885	0.0	C/6833885-6834631,6834711-6835059,6835137-6835450,6835547-6835765	AT1G19780.2 AT1G19780.2 CDS cyclic nucleotide gated channel 8
At1g19790	chr1:006838400	0.0	C/6838400-6838788,6839183-6839831	AT1G19790.1 CDS SHI-related sequence 7 [TAIR10] CDS gene_syn F14P1.22, F14P1_22, SHI-related sequence 7, SRS7 gene SRS7 function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product SHI-related sequence 7 note SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G19790.1p transcript_id AT1G19790.1 protein_id AT1G19790.1p transcript_id AT1G19790.1
At1g19790	chr1:006838400	0.0	C/6838400-6838788,6839183-6839831	AT1G19790.2 CDS SHI-related sequence 7 [TAIR10] CDS gene_syn F14P1.22, F14P1_22, SHI-related sequence 7, SRS7 gene SRS7 function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product SHI-related sequence 7 note SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19790.2p transcript_id AT1G19790.2 protein_id AT1G19790.2p transcript_id AT1G19790.2
At1g19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.1 CDS trigalactosyldiacylglycerol 1 [TAIR10] CDS gene_syn F14P1.27, F14P1_27, TGD1, trigalactosyldiacylglycerol 1 gene TGD1 function Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast inner membrane|GO:0009706|16199613|TAS go_component chloroplast outer membrane|GO:0009707|12743031|IDA go_component chloroplast envelope|GO:0009941|16199613|IDA go_process lipid transport|GO:0006869|12743031|IMP go_function lipid transporter activity|GO:0005319|12743031|IMP product trigalactosyldiacylglycerol 1 note trigalactosyldiacylglycerol 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 5322 Blast hits to 5322 proteins in 1401 species: Archae - 0; Bacteria - 4515; Metazoa - 1; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 758 (source: NCBI BLink). protein_id AT1G19800.1p transcript_id AT1G19800.1 protein_id AT1G19800.1p transcript_id AT1G19800.1
At1g19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.2 CDS trigalactosyldiacylglycerol 1 [TAIR10] CDS gene_syn F14P1.27, F14P1_27, TGD1, trigalactosyldiacylglycerol 1 gene TGD1 function Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast inner membrane|GO:0009706|16199613|TAS go_component chloroplast outer membrane|GO:0009707|12743031|IDA go_component chloroplast envelope|GO:0009941|16199613|IDA go_process lipid transport|GO:0006869|12743031|IMP go_function lipid transporter activity|GO:0005319|12743031|IMP product trigalactosyldiacylglycerol 1 note trigalactosyldiacylglycerol 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19800.2p transcript_id AT1G19800.2 protein_id AT1G19800.2p transcript_id AT1G19800.2
At1g19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.3 CDS trigalactosyldiacylglycerol 1 [TAIR10] CDS gene_syn F14P1.27, F14P1_27, TGD1, trigalactosyldiacylglycerol 1 gene TGD1 function Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast inner membrane|GO:0009706|16199613|TAS go_component chloroplast outer membrane|GO:0009707|12743031|IDA go_component chloroplast envelope|GO:0009941|16199613|IDA go_process lipid transport|GO:0006869|12743031|IMP go_function lipid transporter activity|GO:0005319|12743031|IMP product trigalactosyldiacylglycerol 1 note trigalactosyldiacylglycerol 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G19800.3p transcript_id AT1G19800.3 protein_id AT1G19800.3p transcript_id AT1G19800.3
AT1G19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.4 AT1G19800.4 CDS trigalactosyldiacylglycerol 1
AT1G19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.5 AT1G19800.5 CDS trigalactosyldiacylglycerol 1
AT1G19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.6 AT1G19800.6 CDS trigalactosyldiacylglycerol 1
At1g19810	chr1:006848382	0.0	C/6848382-6849988	AT1G19810.1 [TAIR10] pseudogene
At1g19830	chr1:006852230	0.0	W/6852230-6852583	AT1G19830.1 CDS SAUR-like auxin-responsive protein family [TAIR10] CDS gene_syn F14P1.18, F14P1_18 go_component cellular_component|GO:0005575||ND go_process response to auxin stimulus|GO:0009733||ISS go_function molecular_function|GO:0003674||ND product SAUR-like auxin-responsive protein family note SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G75580.1); Has 1272 Blast hits to 1255 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1271; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G19830.1p transcript_id AT1G19830.1 protein_id AT1G19830.1p transcript_id AT1G19830.1
At1g19835	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.1 CDS filament-like protein (DUF869) [TAIR10] CDS gene_syn F14P1.24, F14P1_24 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF869) note Plant protein of unknown function (DUF869); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2); Has 56433 Blast hits to 30629 proteins in 2025 species: Archae - 861; Bacteria - 7306; Metazoa - 28779; Fungi - 5162; Plants - 3416; Viruses - 109; Other Eukaryotes - 10800 (source: NCBI BLink). protein_id AT1G19835.1p transcript_id AT1G19835.1 protein_id AT1G19835.1p transcript_id AT1G19835.1
At1g19835	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.2 CDS filament-like protein (DUF869) [TAIR10] CDS gene_syn F14P1.24, F14P1_24 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF869) note Plant protein of unknown function (DUF869); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2). protein_id AT1G19835.2p transcript_id AT1G19835.2 protein_id AT1G19835.2p transcript_id AT1G19835.2
AT1G19835	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.3 AT1G19835.3 CDS filament-like protein (DUF869)
AT1G19835	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.4 AT1G19835.4 CDS filament-like protein (DUF869)
AT1G19835	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.5 AT1G19835.5 CDS filament-like protein (DUF869)
AT1G19835	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.6 AT1G19835.6 CDS filament-like protein (DUF869)
At1g19840	chr1:006872794	0.0	C/6872794-6873255	AT1G19840.1 CDS SAUR-like auxin-responsive protein family [TAIR10] CDS gene_syn F6F9.11, F6F9_11 go_process response to auxin stimulus|GO:0009733||ISS go_function molecular_function|GO:0003674||ND product SAUR-like auxin-responsive protein family note SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G75590.1); Has 1391 Blast hits to 1377 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1390; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G19840.1p transcript_id AT1G19840.1 protein_id AT1G19840.1p transcript_id AT1G19840.1
At1g19850	chr1:006887353	0.0	W/6887353-6887485,6887636-6887751,6887860-6887958,6888049-6888105,6888194-6888349,6888429-6888513,6888590-6888680,6888777-6888941,6889024-6889146,6889232-6889443,6889523-6890676,6890769-6890959,6891056-6891182	AT1G19850.1 CDS Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [TAIR10] CDS gene_syn ARF5, AUXIN RESPONSE FACTOR 5, F6F9.10, F6F9_10, IAA24, MONOPTEROS, MP, TRANSCRIPTION FACTOR IAA24, indole-3-acetic acid inducible 24 gene MP function Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder. go_component membrane|GO:0016020|17432890|IDA go_component nucleus|GO:0005634|9482737|ISS go_process response to auxin stimulus|GO:0009733|11283339|IEP go_process embryo development|GO:0009790|17553903|IGI go_process flower development|GO:0009908|17553903|IGI go_process longitudinal axis specification|GO:0009942|8904808|IMP go_process xylem and phloem pattern formation|GO:0010051|8904808|IMP go_process leaf vascular tissue pattern formation|GO:0010305|17553903|IGI go_process root development|GO:0048364|17553903|IGI go_process meristem development|GO:0048507|17553903|IGI go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9482737|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9482737|TAS go_function promoter binding|GO:0010843|19369397|IDA product Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related note MONOPTEROS (MP); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, promoter binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 2568 Blast hits to 2208 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 4; Fungi - 3; Plants - 2536; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G19850.1p transcript_id AT1G19850.1 protein_id AT1G19850.1p transcript_id AT1G19850.1
AT1G19850	chr1:006887386	0.0	W/6887386-6887485,6887636-6887751,6887860-6887958,6888049-6888105,6888194-6888349,6888429-6888513,6888590-6888680,6888777-6888941,6889024-6889146,6889232-6889443,6889523-6890676,6890769-6890959,6891056-6891182	AT1G19850.2 AT1G19850.2 CDS Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
AT1G19860	chr1:006891654	0.0	C/6891654-6892518,6892616-6892740,6893039-6893236,6893370-6893429	AT1G19860.2 AT1G19860.2 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
At1g19860	chr1:006891654	0.0	C/6891654-6892518,6892616-6892740,6893039-6893236,6894347-6894400	AT1G19860.1 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein [TAIR10] CDS gene_syn F6F9.9, F6F9_9 go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS product Zinc finger C-x8-C-x5-C-x3-H type family protein note Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G66270.1); Has 210 Blast hits to 187 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 12; Plants - 160; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G19860.1p transcript_id AT1G19860.1 protein_id AT1G19860.1p transcript_id AT1G19860.1
AT1G19870	chr1:006895400	0.0	C/6895400-6895419,6895513-6896950,6897065-6897124,6897206-6897385,6897544-6897681	AT1G19870.2 AT1G19870.2 CDS IQ-domain 32
At1g19870	chr1:006895400	0.0	C/6895400-6895419,6895513-6896950,6897065-6897124,6897206-6897385,6897544-6898137,6898447-6898539	AT1G19870.1 CDS IQ-domain 32 [TAIR10] CDS gene_syn F6F9.8, F6F9_8, IQ-domain 32, iqd32 gene iqd32 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_process biological_process|GO:0008150||ND go_function calmodulin binding|GO:0005516||ISS product IQ-domain 32 note IQ-domain 32 (iqd32); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1); Has 9103 Blast hits to 6594 proteins in 683 species: Archae - 22; Bacteria - 1108; Metazoa - 3792; Fungi - 1037; Plants - 1107; Viruses - 33; Other Eukaryotes - 2004 (source: NCBI BLink). protein_id AT1G19870.1p transcript_id AT1G19870.1 protein_id AT1G19870.1p transcript_id AT1G19870.1
At1g19880	chr1:006900648	0.0	C/6900648-6900979,6901055-6901088,6901209-6901278,6901362-6901415,6901496-6901618,6901700-6901781,6901874-6901998,6902080-6902103,6902198-6902228,6902323-6902440,6902728-6902779,6902892-6903015,6903085-6903206,6903313-6903380,6903473-6903534,6903623-6903818	AT1G19880.1 CDS Regulator of chromosome condensation (RCC1) family protein [TAIR10] CDS gene_syn F6F9.7, F6F9_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function Ran GTPase binding|GO:0008536||ISS product Regulator of chromosome condensation (RCC1) family protein note Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 17859 Blast hits to 6314 proteins in 497 species: Archae - 78; Bacteria - 2347; Metazoa - 6181; Fungi - 1100; Plants - 2708; Viruses - 16; Other Eukaryotes - 5429 (source: NCBI BLink). protein_id AT1G19880.1p transcript_id AT1G19880.1 protein_id AT1G19880.1p transcript_id AT1G19880.1
At1g19890	chr1:006905034	0.0	W/6905034-6905105,6905220-6905299,6905398-6905488,6905622-6905792	AT1G19890.1 CDS male-gamete-specific histone H3 [TAIR10] CDS gene_syn ATMGH3, F6F9.5, F6F9_5, MALE-GAMETE-SPECIFIC HISTONE H3, MGH3, male-gamete-specific histone H3 gene MGH3 function histone 3.3, male-gamete-specific expression go_function DNA binding|GO:0003677||IEA go_component nucleus|GO:0005634|17555967|IDA go_component generative cell nucleus|GO:0048555|17555967|IDA go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP go_function DNA binding|GO:0003677||ISS product male-gamete-specific histone H3 note male-gamete-specific histone H3 (MGH3); FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: generative cell nucleus, nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, K second mitotic division stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14587 Blast hits to 14579 proteins in 7249 species: Archae - 0; Bacteria - 0; Metazoa - 10590; Fungi - 2033; Plants - 1270; Viruses - 0; Other Eukaryotes - 694 (source: NCBI BLink). protein_id AT1G19890.1p transcript_id AT1G19890.1 protein_id AT1G19890.1p transcript_id AT1G19890.1
At1g19900	chr1:006907038	0.0	C/6907038-6908684	AT1G19900.1 CDS glyoxal oxidase-related protein [TAIR10] CDS gene_syn F6F9.4, F6F9_4 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product glyoxal oxidase-related protein note glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G75620.1); Has 833 Blast hits to 830 proteins in 167 species: Archae - 0; Bacteria - 311; Metazoa - 0; Fungi - 239; Plants - 262; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G19900.1p transcript_id AT1G19900.1 protein_id AT1G19900.1p transcript_id AT1G19900.1
At1g19910	chr1:006913317	0.0	W/6913317-6913395,6913501-6913786,6914190-6914322	AT1G19910.1 CDS ATPase, F0/V0 complex, subunit C protein [TAIR10] CDS gene_syn ATVHA-C2, AVA-2PE, AVA-P2, F6F9.3, F6F9_3, VACUOLAR H+-PUMPING ATPASE 16 KDA PROTEOLIPID, VACUOLAR-TYPE H+ ATPASE C2 gene AVA-P2 function vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2) go_component vacuole|GO:0005773|15215502|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_process ATP synthesis coupled proton transport|GO:0015986||IEA go_component vacuolar proton-transporting V-type ATPase, V0 domain|GO:0000220|7579175|ISS go_function ATPase activity|GO:0016887||ISS go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961|7579175|TAS product ATPase, F0/V0 complex, subunit C protein note AVA-P2; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar proton-transporting V-type ATPase, V0 domain, plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2718 Blast hits to 2491 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 340; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink). protein_id AT1G19910.1p transcript_id AT1G19910.1 protein_id AT1G19910.1p transcript_id AT1G19910.1
AT1G19910	chr1:006913317	0.0	W/6913317-6913395,6913501-6913790	AT1G19910.2 AT1G19910.2 CDS ATPase, F0/V0 complex, subunit C protein
At1g19920	chr1:006914835	0.0	C/6914835-6914969,6915083-6915169,6915273-6915533,6915625-6916030,6916116-6916657	AT1G19920.1 CDS Pseudouridine synthase/archaeosine transglycosylase-like family protein [TAIR10] CDS gene_syn APS2, ASA1, ATP SULFURYLASE ARABIDOPSIS 1, ATP SULFURYLASE PRECURSOR, F6F9.2, F6F9_2 gene APS2 function encodes a chloroplast form of ATP sulfurylase go_component chloroplast|GO:0009507|10806350|NAS go_process sulfate assimilation|GO:0000103|7487067|TAS go_process sulfate assimilation|GO:0000103|8647819|TAS go_function sulfate adenylyltransferase (ATP) activity|GO:0004781|8647819|IMP product Pseudouridine synthase/archaeosine transglycosylase-like family protein note APS2; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: ATP sulfurylase 1 (TAIR:AT3G22890.1); Has 2101 Blast hits to 2098 proteins in 651 species: Archae - 98; Bacteria - 865; Metazoa - 242; Fungi - 201; Plants - 187; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink). protein_id AT1G19920.1p transcript_id AT1G19920.1 protein_id AT1G19920.1p transcript_id AT1G19920.1
At1g19930	chr1:006917020	0.0	W/6917020-6917545,6917630-6918138	AT1G19930.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F6F9.32, F6F9_32 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G60570.1); Has 1401 Blast hits to 1359 proteins in 118 species: Archae - 2; Bacteria - 52; Metazoa - 261; Fungi - 0; Plants - 1065; Viruses - 6; Other Eukaryotes - 15 (source: NCBI BLink). protein_id AT1G19930.1p transcript_id AT1G19930.1 protein_id AT1G19930.1p transcript_id AT1G19930.1
At1g19940	chr1:006918323	0.0	C/6918323-6918652,6918742-6918908,6918989-6919127,6919214-6919648,6919721-6920004,6920076-6920268	AT1G19940.1 CDS glycosyl hydrolase 9B5 [TAIR10] CDS gene_syn AtGH9B5, F6F9.1, F6F9_1, GH9B5, glycosyl hydrolase 9B5 gene GH9B5 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product glycosyl hydrolase 9B5 note glycosyl hydrolase 9B5 (GH9B5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B7 (TAIR:AT1G75680.1); Has 1847 Blast hits to 1835 proteins in 264 species: Archae - 2; Bacteria - 685; Metazoa - 182; Fungi - 17; Plants - 919; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT1G19940.1p transcript_id AT1G19940.1 protein_id AT1G19940.1p transcript_id AT1G19940.1
AT1G19940	chr1:006918323	0.0	C/6918323-6918652,6918742-6918908,6918989-6919127,6919214-6919648,6919721-6920004,6920076-6920268	AT1G19940.2 AT1G19940.2 CDS glycosyl hydrolase 9B5
AT1G19940	chr1:006918700	0.0	C/6918700-6918908,6918989-6919127,6919214-6919648,6919721-6920004,6920076-6920268	AT1G19940.3 AT1G19940.3 CDS glycosyl hydrolase 9B5
At1g19950	chr1:006925043	0.0	W/6925043-6925074,6925165-6925263,6925361-6925417,6925507-6925570,6925676-6925882,6926039-6926527	AT1G19950.1 CDS HVA22-like protein H (ATHVA22H) [TAIR10] CDS gene_syn HVA22-like protein H (ATHVA22H), HVA22H, T20H2.26, T20H2_26 gene HVA22H go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product HVA22-like protein H (ATHVA22H) note HVA22-like protein H (ATHVA22H) (HVA22H); CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: Abscisic acid-responsive (TB2/DP1, HVA22) family protein (TAIR:AT5G42560.1); Has 10528 Blast hits to 8347 proteins in 778 species: Archae - 22; Bacteria - 1518; Metazoa - 4092; Fungi - 1457; Plants - 1639; Viruses - 302; Other Eukaryotes - 1498 (source: NCBI BLink). protein_id AT1G19950.1p transcript_id AT1G19950.1 protein_id AT1G19950.1p transcript_id AT1G19950.1
At1g19960	chr1:006928083	0.0	W/6928083-6928277	AT1G19960.1 CDS transcription factor [TAIR10] CDS gene_syn T20H2.25, T20H2_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: transmembrane receptors (TAIR:AT2G32140.1); Has 41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 23; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G19960.1p transcript_id AT1G19960.1 protein_id AT1G19960.1p transcript_id AT1G19960.1
At1g19968	chr1:006930261	0.0	W/6930261-6930985	AT1G19968.1 [TAIR10] ncRNA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G19968.1
At1g19970	chr1:006931194	0.0	C/6931194-6931242,6931341-6931465,6931545-6931625,6931719-6931859,6932069-6932268,6932375-6932597	AT1G19970.1 CDS ER lumen protein retaining receptor family protein [TAIR10] CDS gene_syn T20H2.24, T20H2_24 go_component integral to membrane|GO:0016021||IEA go_process protein retention in ER lumen|GO:0006621||IEA go_function ER retention sequence binding|GO:0046923||IEA go_component integral to membrane|GO:0016021||ISS go_process protein transport|GO:0015031||ISS go_function receptor activity|GO:0004872||ISS product ER lumen protein retaining receptor family protein note ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G75760.1); Has 893 Blast hits to 892 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 180; Plants - 232; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink). protein_id AT1G19970.1p transcript_id AT1G19970.1 protein_id AT1G19970.1p transcript_id AT1G19970.1
AT1G19970	chr1:006931476	0.0	C/6931476-6931625,6931719-6931859,6932069-6932268,6932375-6932597	AT1G19970.2 AT1G19970.2 CDS ER lumen protein retaining receptor family protein
At1g19980	chr1:006933162	0.0	W/6933162-6933365,6933489-6933600,6933696-6933760,6933853-6934371,6934515-6934643	AT1G19980.1 CDS cytomatrix protein-related [TAIR10] CDS gene_syn T20H2.28, T20H2_28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product cytomatrix protein-related note cytomatrix protein-related; Has 8598 Blast hits to 6353 proteins in 629 species: Archae - 108; Bacteria - 984; Metazoa - 3794; Fungi - 795; Plants - 240; Viruses - 29; Other Eukaryotes - 2648 (source: NCBI BLink). protein_id AT1G19980.1p transcript_id AT1G19980.1 protein_id AT1G19980.1p transcript_id AT1G19980.1
At1g19990	chr1:006935327	0.0	W/6935327-6935611,6935718-6935813,6935904-6935974,6936362-6936665	AT1G19990.1 CDS nucleolin, putative [TAIR10] CDS gene_syn T20H2.23, T20H2_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). protein_id AT1G19990.1p transcript_id AT1G19990.1 protein_id AT1G19990.1p transcript_id AT1G19990.1
At1g20000	chr1:006936898	0.0	C/6936898-6937420,6937575-6937666	AT1G20000.1 CDS TBP-associated factor 11B [TAIR10] CDS gene_syn T20H2.22, T20H2_22, TAF11b, TBP-associated factor 11B gene TAF11b function Encodes TAF11b, a putative TBP-associated factor (TBP: TATA binding protein). go_component nucleus|GO:0005634||IEA go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA go_function DNA binding|GO:0003677||IEA go_function RNA polymerase II transcription factor activity|GO:0003702||IEA go_process transcription|GO:0006350||ISS go_function transcription initiation factor activity|GO:0016986||ISS product TBP-associated factor 11B note TBP-associated factor 11B (TAF11b); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: nucleus; EXPRESSED IN: root, inflorescence, leaf; CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 11 (TAIR:AT4G20280.1); Has 325 Blast hits to 325 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 66; Plants - 51; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G20000.1p transcript_id AT1G20000.1 protein_id AT1G20000.1p transcript_id AT1G20000.1
At1g20010	chr1:006938033	0.0	C/6938033-6938715,6938795-6939064,6940085-6940481	AT1G20010.1 CDS tubulin beta-5 chain [TAIR10] CDS gene_syn T20H2.21, T20H2_21, TUB5, tubulin beta-5 chain gene TUB5 function beta tubulin go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component membrane|GO:0016020|17432890|IDA go_component tubulin complex|GO:0045298|1498609|ISS go_process microtubule-based process|GO:0007017|1498609|ISS go_function structural constituent of cytoskeleton|GO:0005200|1498609|ISS product tubulin beta-5 chain note tubulin beta-5 chain (TUB5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process; LOCATED IN: tubulin complex, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-1 chain (TAIR:AT1G75780.1); Has 23676 Blast hits to 23579 proteins in 4895 species: Archae - 37; Bacteria - 47; Metazoa - 4468; Fungi - 14216; Plants - 1551; Viruses - 0; Other Eukaryotes - 3357 (source: NCBI BLink). protein_id AT1G20010.1p transcript_id AT1G20010.1 protein_id AT1G20010.1p transcript_id AT1G20010.1
At1g20015	chr1:006941285	0.0	W/6941285-6941373	AT1G20015.1 [TAIR10] snoRNA gene_syn 51902.SNORNA00001 go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product snoRNA note snoRNA transcript_id AT1G20015.1
At1g20020	chr1:006942851	0.0	W/6942851-6942955,6943228-6943483,6943582-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.1 CDS ferredoxin-NADP(+)-oxidoreductase 2 [TAIR10] CDS gene_syn ATLFNR2, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR2, LEAF FNR 2, T20H2.20, T20H2_20, ferredoxin-NADP(+)-oxidoreductase 2 gene FNR2 function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component apoplast|GO:0048046|18538804|IDA go_process defense response to bacterium|GO:0042742|17028151|IEP go_component chloroplast thylakoid membrane|GO:0009535||IDA go_component chloroplast stroma|GO:0009570||IDA go_process defense response to fungus, incompatible interaction|GO:0009817|19857612|IDA go_process oxidation reduction|GO:0055114||IDA go_function NADPH dehydrogenase activity|GO:0003959||IDA go_function poly(U) RNA binding|GO:0008266|17511964|IDA go_function oxidoreductase activity|GO:0016491||ISS product ferredoxin-NADP(+)-oxidoreductase 2 note ferredoxin-NADP(+)-oxidoreductase 2 (FNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6774 Blast hits to 6774 proteins in 1708 species: Archae - 20; Bacteria - 3604; Metazoa - 802; Fungi - 759; Plants - 616; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink). protein_id AT1G20020.1p transcript_id AT1G20020.1 protein_id AT1G20020.1p transcript_id AT1G20020.1
At1g20020	chr1:006942851	0.0	W/6942851-6942955,6943228-6943486,6943585-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.3 CDS ferredoxin-NADP(+)-oxidoreductase 2 [TAIR10] CDS gene_syn ATLFNR2, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR2, LEAF FNR 2, T20H2.20, T20H2_20, ferredoxin-NADP(+)-oxidoreductase 2 gene FNR2 function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma go_component chloroplast|GO:0009507|18431481|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component apoplast|GO:0048046|18538804|IDA go_process defense response to bacterium|GO:0042742|17028151|IEP go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast thylakoid membrane|GO:0009535||IDA go_component chloroplast stroma|GO:0009570||IDA go_process defense response to fungus, incompatible interaction|GO:0009817|19857612|IDA go_process oxidation reduction|GO:0055114||IDA go_function NADPH dehydrogenase activity|GO:0003959||IDA go_function poly(U) RNA binding|GO:0008266|17511964|IDA go_function oxidoreductase activity|GO:0016491||ISS product ferredoxin-NADP(+)-oxidoreductase 2 note LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6779 Blast hits to 6779 proteins in 1702 species: Archae - 20; Bacteria - 3601; Metazoa - 804; Fungi - 729; Plants - 614; Viruses - 0; Other Eukaryotes - 1011 (source: NCBI BLink). protein_id AT1G20020.3p transcript_id AT1G20020.3 protein_id AT1G20020.3p transcript_id AT1G20020.3
At1g20020	chr1:006943465	0.0	W/6943465-6943483,6943582-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.2 CDS ferredoxin-NADP(+)-oxidoreductase 2 [TAIR10] CDS gene_syn ATLFNR2, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR2, LEAF FNR 2, T20H2.20, T20H2_20, ferredoxin-NADP(+)-oxidoreductase 2 gene FNR2 function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma go_component chloroplast|GO:0009507|18431481|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component apoplast|GO:0048046|18538804|IDA go_process defense response to bacterium|GO:0042742|17028151|IEP go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component chloroplast thylakoid membrane|GO:0009535||IDA go_component chloroplast stroma|GO:0009570||IDA go_process defense response to fungus, incompatible interaction|GO:0009817|19857612|IDA go_process oxidation reduction|GO:0055114||IDA go_function NADPH dehydrogenase activity|GO:0003959||IDA go_function poly(U) RNA binding|GO:0008266|17511964|IDA go_function oxidoreductase activity|GO:0016491||ISS product ferredoxin-NADP(+)-oxidoreductase 2 note LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6542 Blast hits to 6542 proteins in 1635 species: Archae - 18; Bacteria - 3429; Metazoa - 796; Fungi - 693; Plants - 607; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink). protein_id AT1G20020.2p transcript_id AT1G20020.2 protein_id AT1G20020.2p transcript_id AT1G20020.2
At1g20030	chr1:006945725	0.0	W/6945725-6945770,6945845-6946547,6946816-6947017	AT1G20030.2 CDS Pathogenesis-related thaumatin superfamily protein [TAIR10] CDS gene_syn T20H2.19, T20H2_19 go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process response to other organism|GO:0051707||ISS go_function molecular_function|GO:0003674||ND product Pathogenesis-related thaumatin superfamily protein note Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G20030.2p transcript_id AT1G20030.2 protein_id AT1G20030.2p transcript_id AT1G20030.2
At1g20030	chr1:006945850	0.0	W/6945850-6946547,6946816-6947017	AT1G20030.1 CDS Pathogenesis-related thaumatin superfamily protein [TAIR10] CDS gene_syn T20H2.19, T20H2_19 go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process response to other organism|GO:0051707||ISS go_function molecular_function|GO:0003674||ND product Pathogenesis-related thaumatin superfamily protein note Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 1614 Blast hits to 1596 proteins in 182 species: Archae - 0; Bacteria - 45; Metazoa - 56; Fungi - 77; Plants - 1416; Viruses - 2; Other Eukaryotes - 18 (source: NCBI BLink). protein_id AT1G20030.1p transcript_id AT1G20030.1 protein_id AT1G20030.1p transcript_id AT1G20030.1
At1g20040	chr1:006948860	0.0	C/6948860-6948943	AT1G20040.1 [TAIR10] tRNA gene_syn 51902.TRNA-LEU-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Leu (anticodon: CAA) transcript_id AT1G20040.1
At1g20050	chr1:006949160	0.0	W/6949160-6949301,6949440-6949580,6949667-6949775,6949856-6950135	AT1G20050.1 CDS C-8,7 sterol isomerase [TAIR10] CDS gene_syn HYD1, HYDRA1 gene HYD1 function C-8 sterol isomerase go_component plasma membrane|GO:0005886|17317660|IDA go_process sterol biosynthetic process|GO:0016126|12100483|TAS go_function C-8 sterol isomerase activity|GO:0000247|9862498|IMP product C-8,7 sterol isomerase note HYDRA1 (HYD1); FUNCTIONS IN: C-8 sterol isomerase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Emopamil-binding (InterPro:IPR007905); Has 377 Blast hits to 377 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 175; Plants - 59; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G20050.1p transcript_id AT1G20050.1 protein_id AT1G20050.1p transcript_id AT1G20050.1
AT1G20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951680,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.8 AT1G20060.8 CDS ATP binding microtubule motor family protein
At1g20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951680,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954157-6954321,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.1 CDS ATP binding microtubule motor family protein [TAIR10] CDS gene_syn T20H2.17, T20H2_17 go_component chloroplast|GO:0009507||IEA go_process microtubule-based movement|GO:0007018||IEA go_function microtubule motor activity|GO:0003777||IEA go_function ATP binding|GO:0005524||IEA go_function microtubule motor activity|GO:0003777||ISS product ATP binding microtubule motor family protein note ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1); Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2; Bacteria - 255; Metazoa - 4769; Fungi - 1373; Plants - 1690; Viruses - 3; Other Eukaryotes - 2533 (source: NCBI BLink). protein_id AT1G20060.1p transcript_id AT1G20060.1 protein_id AT1G20060.1p transcript_id AT1G20060.1
AT1G20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951680,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.4 AT1G20060.4 CDS ATP binding microtubule motor family protein
AT1G20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951680,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952653-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.9 AT1G20060.9 CDS ATP binding microtubule motor family protein
AT1G20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952479-6952571,6952653-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.2 AT1G20060.2 CDS ATP binding microtubule motor family protein
AT1G20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953289,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.7 AT1G20060.7 CDS ATP binding microtubule motor family protein
AT1G20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.6 AT1G20060.6 CDS ATP binding microtubule motor family protein
AT1G20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952653-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.3 AT1G20060.3 CDS ATP binding microtubule motor family protein
AT1G20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.5 AT1G20060.5 CDS ATP binding microtubule motor family protein
AT1G20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952479-6952571,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.10 AT1G20060.10 CDS ATP binding microtubule motor family protein
At1g20065	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.1 CDS DNA-directed RNA polymerase I subunit RPA12-like protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). protein_id AT1G20065.1p transcript_id AT1G20065.1 protein_id AT1G20065.1p transcript_id AT1G20065.1
AT1G20065	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.3 AT1G20065.3 CDS DNA-directed RNA polymerase I subunit RPA12-like protein
AT1G20065	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.4 AT1G20065.4 CDS DNA-directed RNA polymerase I subunit RPA12-like protein
AT1G20065	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.5 AT1G20065.5 CDS DNA-directed RNA polymerase I subunit RPA12-like protein
AT1G20065	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.6 AT1G20065.6 CDS DNA-directed RNA polymerase I subunit RPA12-like protein
AT1G20065	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.7 AT1G20065.7 CDS DNA-directed RNA polymerase I subunit RPA12-like protein
At1g20065	chr1:006956973	0.0	W/6956973-6957090,6957191-6957348	AT1G20065.2 CDS DNA-directed RNA polymerase I subunit RPA12-like protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). protein_id AT1G20065.2p transcript_id AT1G20065.2 protein_id AT1G20065.2p transcript_id AT1G20065.2
At1g20070	chr1:006958244	0.0	C/6958244-6958825	AT1G20070.1 CDS hypothetical protein [TAIR10] CDS gene_syn T20H2.15, T20H2_15 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20070.1p transcript_id AT1G20070.1 protein_id AT1G20070.1p transcript_id AT1G20070.1
At1g20080	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.1 CDS Calcium-dependent lipid-binding (CaLB domain) family protein [TAIR10] CDS gene_syn ATSYTB, NTMC2T1.2, NTMC2TYPE1.2, SYT2, SYTB, T20H2.13, T20H2_13, synaptotagmin 2 gene SYTB go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Calcium-dependent lipid-binding (CaLB domain) family protein note SYTB; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1); Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 4705; Fungi - 871; Plants - 1207; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink). protein_id AT1G20080.1p transcript_id AT1G20080.1 protein_id AT1G20080.1p transcript_id AT1G20080.1
AT1G20080	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.2 AT1G20080.2 CDS Calcium-dependent lipid-binding (CaLB domain) family protein
AT1G20080	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.3 AT1G20080.3 CDS Calcium-dependent lipid-binding (CaLB domain) family protein
AT1G20080	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.4 AT1G20080.4 CDS Calcium-dependent lipid-binding (CaLB domain) family protein
AT1G20080	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.5 AT1G20080.5 CDS Calcium-dependent lipid-binding (CaLB domain) family protein
At1g20090	chr1:006967223	0.0	W/6967223-6967318,6967617-6967704,6967790-6967899,6967981-6968044,6968193-6968257,6968340-6968405,6968505-6968603	AT1G20090.1 CDS RHO-related protein from plants 2 [TAIR10] CDS gene_syn ARAC4, ATRAC4, ATROP2, Arabidopsis RAC-like 4, GTP-BINDING PROTEIN ARAC4, RHO-related protein from plants 2, ROP2, T20H2.12, T20H2_12 gene ROP2 function Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening. go_component nucleus|GO:0005634|15469496|IDA go_component nucleolus|GO:0005730|15469496|IDA go_component cytoplasm|GO:0005737|15469496|IDA go_component plasma membrane|GO:0005886|18178769|IDA go_process microtubule cytoskeleton organization|GO:0000226|15766531|IMP go_process cell morphogenesis|GO:0000902|15766531|IGI go_process response to light stimulus|GO:0009416|18178769|IDA go_process pollen tube growth|GO:0009860|12456757|IMP go_process regulation of stomatal movement|GO:0010119|18178769|IMP go_function GTP binding|GO:0005525|9349271|ISS go_function GTP binding|GO:0005525||ISS product RHO-related protein from plants 2 note RHO-related protein from plants 2 (ROP2); CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like GTP binding protein 5 (TAIR:AT1G75840.1); Has 24645 Blast hits to 24619 proteins in 682 species: Archae - 9; Bacteria - 67; Metazoa - 12700; Fungi - 3846; Plants - 2697; Viruses - 20; Other Eukaryotes - 5306 (source: NCBI BLink). protein_id AT1G20090.1p transcript_id AT1G20090.1 protein_id AT1G20090.1p transcript_id AT1G20090.1
At1g20100	chr1:006969314	0.0	C/6969314-6969819,6969909-6970179,6970619-6970699	AT1G20100.1 CDS DNA ligase-like protein [TAIR10] CDS gene_syn T20H2.11, T20H2_11 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 471 Blast hits to 438 proteins in 92 species: Archae - 0; Bacteria - 14; Metazoa - 217; Fungi - 43; Plants - 91; Viruses - 1; Other Eukaryotes - 105 (source: NCBI BLink). protein_id AT1G20100.1p transcript_id AT1G20100.1 protein_id AT1G20100.1p transcript_id AT1G20100.1
At1g20100	chr1:006969409	0.0	C/6969409-6969507,6969620-6969819,6969909-6970179,6970619-6970699	AT1G20100.2 CDS DNA ligase-like protein [TAIR10] CDS gene_syn T20H2.11, T20H2_11 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G20100.2p transcript_id AT1G20100.2 protein_id AT1G20100.2p transcript_id AT1G20100.2
At1g20110	chr1:006971554	0.0	W/6971554-6972558,6972631-6972717,6972810-6972941,6973043-6973174,6973329-6973394,6973480-6973590,6973736-6973828,6973938-6973971,6974062-6974129,6974501-6974578	AT1G20110.1 CDS RING/FYVE/PHD zinc finger superfamily protein [TAIR10] CDS gene_syn T20H2.10, T20H2_10 go_process signal transduction|GO:0007165|15358268|ISS go_function phosphoinositide binding|GO:0035091|15358268|ISS product RING/FYVE/PHD zinc finger superfamily protein note RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1); Has 29282 Blast hits to 20083 proteins in 828 species: Archae - 11; Bacteria - 1932; Metazoa - 10999; Fungi - 6486; Plants - 4104; Viruses - 590; Other Eukaryotes - 5160 (source: NCBI BLink). protein_id AT1G20110.1p transcript_id AT1G20110.1 protein_id AT1G20110.1p transcript_id AT1G20110.1
At1g20120	chr1:006975504	0.0	W/6975504-6975891,6976030-6976160,6976263-6976496,6976582-6976837,6976924-6977123	AT1G20120.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn T20H2.29, T20H2_29 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function lipase activity|GO:0016298||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS go_function lipase activity|GO:0016298||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20132.1); Has 3842 Blast hits to 3728 proteins in 303 species: Archae - 6; Bacteria - 497; Metazoa - 14; Fungi - 63; Plants - 3136; Viruses - 3; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G20120.1p transcript_id AT1G20120.1 protein_id AT1G20120.1p transcript_id AT1G20120.1
At1g20130	chr1:006977781	0.0	W/6977781-6977803,6977932-6977956,6978047-6978704,6978870-6979000,6979090-6979353,6979472-6979718,6979807-6980003	AT1G20130.2 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn T20H2.9, T20H2_9 go_process lipid metabolic process|GO:0006629||IEA go_function structural constituent of cell wall|GO:0005199||IEA go_function lipase activity|GO:0016298||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function lipase activity|GO:0016298||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20132.1). protein_id AT1G20130.2p transcript_id AT1G20130.2 protein_id AT1G20130.2p transcript_id AT1G20130.2
At1g20130	chr1:006977939	0.0	W/6977939-6978704,6978870-6979000,6979090-6979353,6979472-6979718,6979807-6980003	AT1G20130.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn T20H2.9, T20H2_9 go_process lipid metabolic process|GO:0006629||IEA go_function structural constituent of cell wall|GO:0005199||IEA go_function lipase activity|GO:0016298||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function lipase activity|GO:0016298||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20132.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G20130.1p transcript_id AT1G20130.1 protein_id AT1G20130.1p transcript_id AT1G20130.1
At1g20132	chr1:006981358	0.0	W/6981358-6981694,6981876-6982006,6982081-6982314,6982958-6983213,6983302-6983495	AT1G20132.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function lipase activity|GO:0016298||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G20132.1p transcript_id AT1G20132.1 protein_id AT1G20132.1p transcript_id AT1G20132.1
At1g20135	chr1:006984124	0.0	W/6984124-6984364,6984497-6984627,6984716-6984952,6985034-6985283,6985371-6985498	AT1G20135.1 CDS GDSL-like Lipase/Acylhydrolase family protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function lipase activity|GO:0016298||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA product GDSL-like Lipase/Acylhydrolase family protein note GDSL-like Lipase/Acylhydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G63170.1); Has 3502 Blast hits to 3463 proteins in 221 species: Archae - 0; Bacteria - 352; Metazoa - 0; Fungi - 12; Plants - 3126; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G20135.1p transcript_id AT1G20135.1 protein_id AT1G20135.1p transcript_id AT1G20135.1
At1g20140	chr1:006986430	0.0	W/6986430-6986747,6986906-6987079	AT1G20140.1 CDS SKP1-like 4 [TAIR10] CDS gene_syn ASK4, SK4, SKP1-like 4, T20H2.8, T20H2_8 gene SK4 go_component nucleus|GO:0005634|15610358|IDA go_component nucleolus|GO:0005730|15610358|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS go_process ubiquitin-dependent protein catabolic process|GO:0006511|12970487|TAS go_function ubiquitin-protein ligase activity|GO:0004842||ISS product SKP1-like 4 note SKP1-like 4 (SK4); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 3 (TAIR:AT2G25700.1); Has 1439 Blast hits to 1435 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 560; Fungi - 180; Plants - 528; Viruses - 11; Other Eukaryotes - 160 (source: NCBI BLink). protein_id AT1G20140.1p transcript_id AT1G20140.1 protein_id AT1G20140.1p transcript_id AT1G20140.1
At1g20150	chr1:006987332	0.0	C/6987332-6987927,6988007-6988217,6988304-6988418,6988530-6988772,6988851-6988951,6989021-6989534,6989617-6989734,6989831-6990096,6990183-6990361	AT1G20150.1 CDS Subtilisin-like serine endopeptidase family protein [TAIR10] CDS gene_syn T20H2.7, T20H2_7 go_component endomembrane system|GO:0012505||IEA go_process proteolysis|GO:0006508||IEA go_process negative regulation of catalytic activity|GO:0043086||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_function identical protein binding|GO:0042802||IEA go_process proteolysis|GO:0006508||ISS product Subtilisin-like serine endopeptidase family protein note Subtilisin-like serine endopeptidase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G20160.1); Has 5897 Blast hits to 5420 proteins in 979 species: Archae - 165; Bacteria - 3134; Metazoa - 93; Fungi - 262; Plants - 1911; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink). protein_id AT1G20150.1p transcript_id AT1G20150.1 protein_id AT1G20150.1p transcript_id AT1G20150.1
At1g20160	chr1:006990852	0.0	C/6990852-6991426,6991507-6991717,6991791-6991905,6991987-6992229,6992338-6992438,6992516-6993029,6993113-6993224,6993329-6993582,6993670-6993737	AT1G20160.2 CDS Subtilisin-like serine endopeptidase family protein [TAIR10] CDS gene_syn ATSBT5.2, T20H2.6, T20H2_6 gene ATSBT5.2 go_component apoplast|GO:0048046|18538804|IDA go_process proteolysis|GO:0006508||IEA go_process negative regulation of catalytic activity|GO:0043086||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_function identical protein binding|GO:0042802||IEA go_component apoplast|GO:0048046||IDA go_process proteolysis|GO:0006508||ISS product Subtilisin-like serine endopeptidase family protein note ATSBT5.2; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G20150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G20160.2p transcript_id AT1G20160.2 protein_id AT1G20160.2p transcript_id AT1G20160.2
At1g20160	chr1:006990852	0.0	C/6990852-6991426,6991507-6991717,6991791-6991905,6991987-6992229,6992338-6992438,6992516-6993029,6993113-6993224,6993329-6993582,6993670-6993854	AT1G20160.1 CDS Subtilisin-like serine endopeptidase family protein [TAIR10] CDS gene_syn ATSBT5.2, T20H2.6, T20H2_6 gene ATSBT5.2 go_component apoplast|GO:0048046|18538804|IDA go_process proteolysis|GO:0006508||IEA go_process negative regulation of catalytic activity|GO:0043086||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_function identical protein binding|GO:0042802||IEA go_component apoplast|GO:0048046||IDA go_process proteolysis|GO:0006508||ISS product Subtilisin-like serine endopeptidase family protein note ATSBT5.2; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G20150.1); Has 8668 Blast hits to 7419 proteins in 1217 species: Archae - 260; Bacteria - 4948; Metazoa - 184; Fungi - 671; Plants - 1928; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink). protein_id AT1G20160.1p transcript_id AT1G20160.1 protein_id AT1G20160.1p transcript_id AT1G20160.1
AT1G20160	chr1:006991567	0.0	C/6991567-6991698,6991791-6991905,6991987-6992229,6992338-6992438,6992516-6993029,6993113-6993224,6993329-6993582,6993670-6993854	AT1G20160.3 AT1G20160.3 CDS Subtilisin-like serine endopeptidase family protein
At1g20170	chr1:006995282	0.0	C/6995282-6995353	AT1G20170.1 [TAIR10] tRNA gene_syn 51902.TRNA-GLU-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Glu (anticodon: TTC) transcript_id AT1G20170.1
At1g20180	chr1:006996354	0.0	W/6996354-6996411,6996665-6997265,6997359-6997779	AT1G20180.2 CDS transmembrane protein (DUF677) [TAIR10] CDS gene_syn T20H2.5, T20H2_5 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF677) note Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G49070.1); Has 138 Blast hits to 138 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20180.2p transcript_id AT1G20180.2 protein_id AT1G20180.2p transcript_id AT1G20180.2
At1g20180	chr1:006996354	0.0	W/6996354-6996411,6996665-6997779	AT1G20180.1 CDS transmembrane protein (DUF677) [TAIR10] CDS gene_syn T20H2.5, T20H2_5 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF677) note Protein of unknown function (DUF677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G49070.1); Has 186 Blast hits to 186 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 186; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20180.1p transcript_id AT1G20180.1 protein_id AT1G20180.1p transcript_id AT1G20180.1
AT1G20190	chr1:006998762	0.0	C/6998762-6999068,6999175-6999449	AT1G20190.2 AT1G20190.2 CDS expansin 11
At1g20190	chr1:006998762	0.0	C/6998762-6999068,6999175-6999496,6999581-6999710	AT1G20190.1 CDS expansin 11 [TAIR10] CDS gene_syn ATEXP11, ATEXPA11, ATHEXP ALPHA 1.14, EXP11, EXPA11, EXPANSIN 11, T20H2.4, T20H2_4, expansin 11 gene EXPA11 function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) go_component cell wall|GO:0005618|15593128|IDA go_process unidimensional cell growth|GO:0009826|11641069|NAS go_process unidimensional cell growth|GO:0009826||ISS go_process plant-type cell wall loosening|GO:0009828|11641069|NAS go_process plant-type cell wall loosening|GO:0009828||ISS go_process plant-type cell wall modification involved in multidimensional cell growth|GO:0009831||ISS product expansin 11 note expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). protein_id AT1G20190.1p transcript_id AT1G20190.1 protein_id AT1G20190.1p transcript_id AT1G20190.1
At1g20200	chr1:007001409	0.0	C/7001409-7001921,7002272-7002511,7002879-7002989,7003078-7003132,7003234-7003370,7003460-7003600,7003792-7003982,7004076-7004154	AT1G20200.1 CDS PAM domain (PCI/PINT associated module) protein [TAIR10] CDS gene_syn EMB2719, EMBRYO DEFECTIVE 2719, HAP15, HAPLESS 15, T20H2.3, T20H2_3 gene EMB2719 go_component plasma membrane|GO:0005886|17317660|IDA go_function enzyme regulator activity|GO:0030234||IEA go_component proteasome complex|GO:0000502|20516081|IDA go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS go_process embryo development ending in seed dormancy|GO:0009793||NAS product PAM domain (PCI/PINT associated module) protein note EMBRYO DEFECTIVE 2719 (EMB2719); FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, embryo development ending in seed dormancy; LOCATED IN: proteasome complex, plasma membrane, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143), 26S proteasome regulatory subunit, C-terminal (InterPro:IPR013586); BEST Arabidopsis thaliana protein match is: PAM domain (PCI/PINT associated module) protein (TAIR:AT1G75990.1); Has 763 Blast hits to 760 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 164; Plants - 180; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). protein_id AT1G20200.1p transcript_id AT1G20200.1 protein_id AT1G20200.1p transcript_id AT1G20200.1
At1g20210	chr1:007004514	0.0	W/7004514-7004585	AT1G20210.1 [TAIR10] tRNA gene_syn 51902.TRNA-ASP-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Asp (anticodon: GTC) transcript_id AT1G20210.1
At1g20220	chr1:007005090	0.0	C/7005090-7005181,7005262-7005495,7005615-7005671,7005779-7005835,7005953-7006027,7006115-7006179,7006305-7006379,7006510-7006598,7006685-7006765,7007163-7007285	AT1G20220.1 CDS Alba DNA/RNA-binding protein [TAIR10] CDS gene_syn T20H2.2, T20H2_2 go_function nucleic acid binding|GO:0003676||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_process biological_process|GO:0008150||ND product Alba DNA/RNA-binding protein note Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G76010.1); Has 46942 Blast hits to 19054 proteins in 1334 species: Archae - 23; Bacteria - 15382; Metazoa - 15943; Fungi - 3395; Plants - 5072; Viruses - 633; Other Eukaryotes - 6494 (source: NCBI BLink). protein_id AT1G20220.1p transcript_id AT1G20220.1 protein_id AT1G20220.1p transcript_id AT1G20220.1
At1g20225	chr1:007007966	0.0	C/7007966-7008148,7008413-7008574,7008722-7008824,7009065-7009318	AT1G20225.1 CDS Thioredoxin superfamily protein [TAIR10] CDS go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Thioredoxin superfamily protein note Thioredoxin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G76020.1); Has 208 Blast hits to 204 proteins in 76 species: Archae - 0; Bacteria - 103; Metazoa - 14; Fungi - 6; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). protein_id AT1G20225.1p transcript_id AT1G20225.1 protein_id AT1G20225.1p transcript_id AT1G20225.1
At1g20230	chr1:007009570	0.0	W/7009570-7011852	AT1G20230.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn T20H2.1, T20H2_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G23330.1); Has 43615 Blast hits to 14351 proteins in 266 species: Archae - 0; Bacteria - 17; Metazoa - 112; Fungi - 108; Plants - 42635; Viruses - 0; Other Eukaryotes - 743 (source: NCBI BLink). protein_id AT1G20230.1p transcript_id AT1G20230.1 protein_id AT1G20230.1p transcript_id AT1G20230.1
At1g20240	chr1:007012113	0.0	C/7012113-7013094,7014498-7015216	AT1G20240.1 CDS SWI-SNF-related chromatin binding protein [TAIR10] CDS gene_syn F14O10.14, F14O10_14 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product SWI-SNF-related chromatin binding protein note SWI-SNF-related chromatin binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1); Has 101 Blast hits to 51 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20240.1p transcript_id AT1G20240.1 protein_id AT1G20240.1p transcript_id AT1G20240.1
At1g20250	chr1:007016516	0.0	W/7016516-7016588	AT1G20250.1 [TAIR10] tRNA gene_syn 61418.TRNA-LYS-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Lys (anticodon: CTT) transcript_id AT1G20250.1
At1g20260	chr1:007016971	0.0	W/7016971-7017022,7017436-7017491,7017596-7017694,7017821-7017880,7018032-7018143,7018230-7018441,7018717-7018845,7018963-7019100,7019188-7019338,7019429-7019511,7019640-7019687,7019777-7019830,7019922-7020005,7020105-7020290	AT1G20260.1 CDS ATPase, V1 complex, subunit B protein [TAIR10] CDS gene_syn F14O10.13, F14O10_13, VHA-B3 go_component vacuole|GO:0005773|15215502|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component chloroplast|GO:0009507|15028209|IDA go_process ATP synthesis coupled proton transport|GO:0015986||IEA go_process proton transport|GO:0015992||IEA go_process ATP metabolic process|GO:0046034||IEA go_function ATP binding|GO:0005524||IEA go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA product ATPase, V1 complex, subunit B protein note ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, cultured cell; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1); Has 40448 Blast hits to 39328 proteins in 9688 species: Archae - 965; Bacteria - 20989; Metazoa - 1674; Fungi - 795; Plants - 8187; Viruses - 0; Other Eukaryotes - 7838 (source: NCBI BLink). protein_id AT1G20260.1p transcript_id AT1G20260.1 protein_id AT1G20260.1p transcript_id AT1G20260.1
At1g20270	chr1:007021383	0.0	C/7021383-7021456,7021558-7021745,7021832-7021961,7022116-7022213,7022327-7022424,7022562-7022646,7022733-7022923	AT1G20270.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F14O10.12, F14O10_12 go_process oxidation reduction|GO:0055114||IEA go_function iron ion binding|GO:0005506||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|GO:0016705||IEA go_function L-ascorbic acid binding|GO:0031418||IEA go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G66060.1); Has 2479 Blast hits to 2467 proteins in 338 species: Archae - 0; Bacteria - 393; Metazoa - 997; Fungi - 73; Plants - 409; Viruses - 15; Other Eukaryotes - 592 (source: NCBI BLink). protein_id AT1G20270.1p transcript_id AT1G20270.1 protein_id AT1G20270.1p transcript_id AT1G20270.1
AT1G20270	chr1:007021828	0.0	C/7021828-7021961,7022116-7022213,7022327-7022424,7022562-7022646,7022733-7022923	AT1G20270.2 AT1G20270.2 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
AT1G20270	chr1:007021828	0.0	C/7021828-7021961,7022116-7022213,7022327-7022424,7022562-7022646,7022733-7022923	AT1G20270.3 AT1G20270.3 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
At1g20280	chr1:007023829	0.0	W/7023829-7023916,7024063-7024145	AT1G20280.1 CDS homeobox-leucine zipper protein-related [TAIR10] CDS gene_syn F14O10.15, F14O10_15 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product homeobox-leucine zipper protein-related note homeobox-leucine zipper protein-related; BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein-related (TAIR:AT1G61200.1); Has 19 Blast hits to 19 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20280.1p transcript_id AT1G20280.1 protein_id AT1G20280.1p transcript_id AT1G20280.1
At1g20290	chr1:007025548	0.0	C/7025548-7026091,7026413-7026725,7028359-7028569,7029618-7029698	AT1G20290.1 CDS SWI-SNF-related chromatin binding protein [TAIR10] CDS gene_syn F14O10.11, F14O10_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product SWI-SNF-related chromatin binding protein note SWI-SNF-related chromatin binding protein; BEST Arabidopsis thaliana protein match is: SWI-SNF-related chromatin binding protein (TAIR:AT1G20240.1); Has 82 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20290.1p transcript_id AT1G20290.1 protein_id AT1G20290.1p transcript_id AT1G20290.1
At1g20300	chr1:007029701	0.0	W/7029701-7031314	AT1G20300.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F14O10.10, F14O10_10 product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G77360.1); Has 44443 Blast hits to 14229 proteins in 312 species: Archae - 5; Bacteria - 69; Metazoa - 601; Fungi - 771; Plants - 41531; Viruses - 0; Other Eukaryotes - 1466 (source: NCBI BLink). protein_id AT1G20300.1p transcript_id AT1G20300.1 protein_id AT1G20300.1p transcript_id AT1G20300.1
At1g20310	chr1:007032308	0.0	W/7032308-7033030	AT1G20310.1 CDS syringolide-induced protein, putative [TAIR10] CDS gene_syn F14O10.9, F14O10_9 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76070.1); Has 46 Blast hits to 46 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20310.1p transcript_id AT1G20310.1 protein_id AT1G20310.1p transcript_id AT1G20310.1
At1g20320	chr1:007033846	0.0	C/7033846-7034874	AT1G20320.1 CDS Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [TAIR10] CDS gene_syn F14O10.8, F14O10_8 go_component nucleus|GO:0005634||IEA go_function phosphoprotein phosphatase activity|GO:0004721||IEA go_process biological_process|GO:0008150||ND product Haloacid dehalogenase-like hydrolase (HAD) superfamily protein note Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G54210.1); Has 1363 Blast hits to 1358 proteins in 225 species: Archae - 0; Bacteria - 2; Metazoa - 285; Fungi - 300; Plants - 331; Viruses - 0; Other Eukaryotes - 445 (source: NCBI BLink). protein_id AT1G20320.1p transcript_id AT1G20320.1 protein_id AT1G20320.1p transcript_id AT1G20320.1
At1g20330	chr1:007038968	0.0	C/7038968-7040053	AT1G20330.1 CDS sterol methyltransferase 2 [TAIR10] CDS gene_syn COTYLEDON VASCULAR PATTERN 1, CVP1, F14O10.7, F14O10_7, FRILL1, FRL1, SMT2, sterol methyltransferase 2 gene SMT2 function Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression. go_component endoplasmic reticulum|GO:0005783|12215504|TAS go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process pattern specification process|GO:0007389|10559439|IMP go_process multidimensional cell growth|GO:0009825|11029701|IMP go_process xylem and phloem pattern formation|GO:0010051|12215504|IMP go_process sterol biosynthetic process|GO:0016126|9208946|IDA go_process negative regulation of DNA endoreduplication|GO:0032876|15737981|IMP go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|9208946|IDA product sterol methyltransferase 2 note sterol methyltransferase 2 (SMT2); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: xylem and phloem pattern formation, negative regulation of DNA endoreduplication, multidimensional cell growth, sterol biosynthetic process, pattern specification process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 3 (TAIR:AT1G76090.1); Has 13231 Blast hits to 13223 proteins in 2296 species: Archae - 440; Bacteria - 9200; Metazoa - 162; Fungi - 455; Plants - 664; Viruses - 0; Other Eukaryotes - 2310 (source: NCBI BLink). protein_id AT1G20330.1p transcript_id AT1G20330.1 protein_id AT1G20330.1p transcript_id AT1G20330.1
At1g20340	chr1:007042770	0.0	C/7042770-7043273	AT1G20340.1 CDS Cupredoxin superfamily protein [TAIR10] CDS gene_syn DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, DRT112, F14O10.6, F14O10_6, PETE2, PLASTOCYANIN 2 gene DRT112 function recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component thylakoid lumen|GO:0031977|11719511|IDA go_function copper ion binding|GO:0005507||IEA go_function electron carrier activity|GO:0009055||IEA go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA go_process response to UV|GO:0009411|8479917|IGI go_process negative regulation of translation|GO:0017148|19403731|IMP go_process response to chemical stimulus|GO:0042221|8479917|IGI go_process response to copper ion|GO:0046688|19084994|IEP go_process copper ion homeostasis|GO:0055070|19084994|IMP product Cupredoxin superfamily protein note DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112 (DRT112); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to UV, response to chemical stimulus, copper ion homeostasis, negative regulation of translation, response to copper ion; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin 1 (TAIR:AT1G76100.1); Has 1286 Blast hits to 1278 proteins in 235 species: Archae - 146; Bacteria - 416; Metazoa - 0; Fungi - 2; Plants - 206; Viruses - 5; Other Eukaryotes - 511 (source: NCBI BLink). protein_id AT1G20340.1p transcript_id AT1G20340.1 protein_id AT1G20340.1p transcript_id AT1G20340.1
At1g20350	chr1:007043737	0.0	W/7043737-7044393	AT1G20350.1 CDS translocase inner membrane subunit 17-1 [TAIR10] CDS gene_syn ATTIM17-1, F14O10.5, F14O10_5, TIM17-1, translocase inner membrane subunit 17-1 gene TIM17-1 function mitochondrial inner membrane translocase go_process protein transport|GO:0015031||IEA go_function protein transporter activity|GO:0008565||IEA go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS go_process protein transport|GO:0015031||ISS go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS product translocase inner membrane subunit 17-1 note translocase inner membrane subunit 17-1 (TIM17-1); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: translocase inner membrane subunit 17-2 (TAIR:AT2G37410.2); Has 784 Blast hits to 781 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 216; Plants - 165; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). protein_id AT1G20350.1p transcript_id AT1G20350.1 protein_id AT1G20350.1p transcript_id AT1G20350.1
AT1G20355	chr1:007044809	0.0	C/7044809-7044943,7045033-7045146,7045251-7045331,7045558-7045739,7045820-7045883	AT1G20355.1 AT1G20355.1 CDS transport/golgi organization-like protein, putative
At1g20360	chr1:007046767	0.0	C/7046767-7047675	AT1G20360.1 CDS F-box family protein [TAIR10] CDS gene_syn F14O10.4, F14O10_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1); Has 127 Blast hits to 122 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20360.1p transcript_id AT1G20360.1 protein_id AT1G20360.1p transcript_id AT1G20360.1
At1g20370	chr1:007051846	0.0	C/7051846-7052269,7052363-7053588	AT1G20370.1 CDS Pseudouridine synthase family protein [TAIR10] CDS gene_syn F14O10.3, F14O10_3 go_process pseudouridine synthesis|GO:0001522||IEA go_process RNA modification|GO:0009451||IEA go_component cellular_component|GO:0005575||ND go_function pseudouridine synthase activity|GO:0009982|18599582|TAS go_function pseudouridine synthase activity|GO:0009982||ISS product Pseudouridine synthase family protein note Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 3883 Blast hits to 3550 proteins in 1359 species: Archae - 140; Bacteria - 2302; Metazoa - 346; Fungi - 312; Plants - 197; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink). protein_id AT1G20370.1p transcript_id AT1G20370.1 protein_id AT1G20370.1p transcript_id AT1G20370.1
At1g20375	chr1:007058194	0.0	W/7058194-7058310	AT1G20375.1 [TAIR10] miRNA gene_syn MIR394A, microRNA394A gene MIR394A function Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340. product MIR394A (microRNA394A); miRNA transcript_id AT1G20375.1
At1g20380	chr1:007061665	0.0	W/7061665-7061774,7062144-7062363,7062436-7062636,7062717-7062787,7062900-7063062,7063195-7063788,7063878-7064258,7064341-7064480,7064561-7064696,7064783-7064896,7064982-7065047	AT1G20380.1 CDS Prolyl oligopeptidase family protein [TAIR10] CDS gene_syn F14O10.2, F14O10_2 go_process proteolysis|GO:0006508||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_function serine-type peptidase activity|GO:0008236||IEA go_component cellular_component|GO:0005575||ND go_process proteolysis|GO:0006508||ISS product Prolyl oligopeptidase family protein note Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G76140.1); Has 7989 Blast hits to 7898 proteins in 1359 species: Archae - 93; Bacteria - 3809; Metazoa - 313; Fungi - 45; Plants - 231; Viruses - 0; Other Eukaryotes - 3498 (source: NCBI BLink). protein_id AT1G20380.1p transcript_id AT1G20380.1 protein_id AT1G20380.1p transcript_id AT1G20380.1
AT1G20380	chr1:007062592	0.0	W/7062592-7062636,7062717-7062787,7062900-7063062,7063195-7063788,7063878-7064258,7064341-7064480,7064561-7064696,7064783-7064896,7064982-7065047	AT1G20380.2 AT1G20380.2 CDS Prolyl oligopeptidase family protein
At1g20390	chr1:007065494	0.0	W/7065494-7071561	AT1G20390.1 [TAIR10] mRNA
At1g20390	chr1:007065494	0.0	W/7065494-7071561	AT1G20390 [TAIR10] TE pseudo gene_syn F5M15.26, F5M15_26 note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
At1g20400	chr1:007072192	0.0	C/7072192-7072983,7073064-7073120,7073198-7073655,7073724-7073873,7073955-7074886,7075072-7075181,7075395-7075628,7075737-7075838	AT1G20400.1 CDS hypothetical protein (DUF1204) [TAIR10] CDS gene_syn F5M15.25, F5M15_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1204) note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G15420.1); Has 2374 Blast hits to 2027 proteins in 308 species: Archae - 22; Bacteria - 170; Metazoa - 962; Fungi - 207; Plants - 198; Viruses - 74; Other Eukaryotes - 741 (source: NCBI BLink). protein_id AT1G20400.1p transcript_id AT1G20400.1 protein_id AT1G20400.1p transcript_id AT1G20400.1
At1g20405	chr1:007077174	0.0	W/7077174-7077257,7077345-7077590	AT1G20405.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20680.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G20405.1p transcript_id AT1G20405.1 protein_id AT1G20405.1p transcript_id AT1G20405.1
AT1G20410	chr1:007079049	0.0	C/7079049-7079124,7079225-7079280,7079354-7079414,7079508-7079581,7079702-7079782,7079893-7079967,7080055-7080174,7080252-7080332,7080420-7080488,7080653-7080724,7080852-7080898,7081407-7081518,7081690-7081798,7081892-7081914	AT1G20410.2 AT1G20410.2 CDS Pseudouridine synthase family protein
At1g20410	chr1:007079049	0.0	C/7079049-7079124,7079225-7079280,7079354-7079414,7079508-7079581,7079702-7079782,7079893-7079967,7080055-7080174,7080252-7080332,7080420-7080488,7080653-7080724,7080852-7080898,7081407-7081518,7081690-7081798,7081892-7082226,7082358-7082504	AT1G20410.1 CDS Pseudouridine synthase family protein [TAIR10] CDS gene_syn F5M15.23, F5M15_23 go_process pseudouridine synthesis|GO:0001522||IEA go_process RNA modification|GO:0009451||IEA go_function RNA binding|GO:0003723||IEA go_function pseudouridine synthase activity|GO:0009982||IEA go_component cellular_component|GO:0005575||ND product Pseudouridine synthase family protein note Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103); Has 545 Blast hits to 513 proteins in 206 species: Archae - 168; Bacteria - 1; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink). protein_id AT1G20410.1p transcript_id AT1G20410.1 protein_id AT1G20410.1p transcript_id AT1G20410.1
At1g20420	chr1:007082668	0.0	W/7082668-7082739	AT1G20420.1 [TAIR10] tRNA gene_syn 60115.TRNA-PRO-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Pro (anticodon: TGG) transcript_id AT1G20420.1
At1g20430	chr1:007083471	0.0	C/7083471-7083821	AT1G20430.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5M15.30, F5M15_30 go_component mitochondrion|GO:0005739|14671022|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20430.1p transcript_id AT1G20430.1 protein_id AT1G20430.1p transcript_id AT1G20430.1
At1g20440	chr1:007084722	0.0	C/7084722-7085180,7085326-7085664	AT1G20440.1 CDS cold-regulated 47 [TAIR10] CDS gene_syn AtCOR47, COR47, F5M15.22, F5M15_22, RD17, cold-regulated 47 gene COR47 function Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant. go_component cellular_component|GO:0005575||ND go_process response to stress|GO:0006950||ISS go_process response to osmotic stress|GO:0006970|11779861|IGI go_process response to cold|GO:0009409|16258011|IEP go_process response to cold|GO:0009409|9668134|IEP go_process response to water deprivation|GO:0009414|11779861|IMP go_process response to water|GO:0009415||ISS go_process cold acclimation|GO:0009631|15356392|IGI go_process cold acclimation|GO:0009631|1731964|ISS go_process response to abscisic acid stimulus|GO:0009737|10205894|IMP go_process heat acclimation|GO:0010286|16807682|IEP go_process defense response to fungus|GO:0050832|19656045|IEP go_function molecular_function|GO:0003674||ND product cold-regulated 47 note cold-regulated 47 (COR47); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: Dehydrin family protein (TAIR:AT1G20450.1); Has 14264 Blast hits to 8754 proteins in 735 species: Archae - 48; Bacteria - 976; Metazoa - 4799; Fungi - 1094; Plants - 2502; Viruses - 117; Other Eukaryotes - 4728 (source: NCBI BLink). protein_id AT1G20440.1p transcript_id AT1G20440.1 protein_id AT1G20440.1p transcript_id AT1G20440.1
At1g20450	chr1:007088235	0.0	C/7088235-7088674,7088768-7089107	AT1G20450.2 CDS Dehydrin family protein [TAIR10] CDS gene_syn EARLY RESPONSIVE TO DEHYDRATION 10, ER10, ERD10, F5M15.21, F5M15_21, LOW TEMPERATURE INDUCED 29, LOW TEMPERATURE INDUCED 45, LTI29, LTI45 gene ERD10 function Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. go_component nucleus|GO:0005634|16487487|ISS go_component cytoplasm|GO:0005737|15356392|IDA go_component actin cytoskeleton|GO:0015629|17010111|IDA go_component membrane|GO:0016020|15356392|IDA go_process response to stress|GO:0006950||ISS go_process response to cold|GO:0009409|14535880|IEP go_process response to cold|GO:0009409|16574749|IEP go_process response to cold|GO:0009409|18761701|IDA go_process response to cold|GO:0009409|7579189|IEP go_process response to cold|GO:0009409||IMP go_process response to water deprivation|GO:0009414|20054552|IMP go_process response to water deprivation|GO:0009414|8069491|IEP go_process response to water deprivation|GO:0009414|8075396|IEP go_process response to water|GO:0009415||ISS go_process cold acclimation|GO:0009631|15356392|IGI go_process response to abscisic acid stimulus|GO:0009737|11292073|IEP go_process regulation of seed germination|GO:0010029|20054552|IMP go_function actin binding|GO:0003779|17010111|IDA product Dehydrin family protein note EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 6841 Blast hits to 4185 proteins in 438 species: Archae - 12; Bacteria - 333; Metazoa - 1811; Fungi - 290; Plants - 1940; Viruses - 33; Other Eukaryotes - 2422 (source: NCBI BLink). protein_id AT1G20450.2p transcript_id AT1G20450.2 protein_id AT1G20450.2p transcript_id AT1G20450.2
At1g20450	chr1:007088235	0.0	C/7088235-7088687,7088778-7089107	AT1G20450.1 CDS Dehydrin family protein [TAIR10] CDS gene_syn EARLY RESPONSIVE TO DEHYDRATION 10, ER10, ERD10, F5M15.21, F5M15_21, LOW TEMPERATURE INDUCED 29, LOW TEMPERATURE INDUCED 45, LTI29, LTI45 gene ERD10 function Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. go_component nucleus|GO:0005634|16487487|ISS go_component cytoplasm|GO:0005737|15356392|IDA go_component actin cytoskeleton|GO:0015629|17010111|IDA go_component membrane|GO:0016020|15356392|IDA go_process response to stress|GO:0006950||ISS go_process response to cold|GO:0009409|14535880|IEP go_process response to cold|GO:0009409|16574749|IEP go_process response to cold|GO:0009409|18761701|IDA go_process response to cold|GO:0009409|7579189|IEP go_process response to cold|GO:0009409||IMP go_process response to water deprivation|GO:0009414|20054552|IMP go_process response to water deprivation|GO:0009414|8069491|IEP go_process response to water deprivation|GO:0009414|8075396|IEP go_process response to water|GO:0009415||ISS go_process cold acclimation|GO:0009631|15356392|IGI go_process response to abscisic acid stimulus|GO:0009737|11292073|IEP go_process regulation of seed germination|GO:0010029|20054552|IMP go_function actin binding|GO:0003779|17010111|IDA product Dehydrin family protein note EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 8140 Blast hits to 5021 proteins in 461 species: Archae - 16; Bacteria - 327; Metazoa - 2363; Fungi - 375; Plants - 2004; Viruses - 65; Other Eukaryotes - 2990 (source: NCBI BLink). protein_id AT1G20450.1p transcript_id AT1G20450.1 protein_id AT1G20450.1p transcript_id AT1G20450.1
At1g20460	chr1:007091505	0.0	W/7091505-7091617,7092786-7092993	AT1G20460.1 CDS NADH-ubiquinone oxidoreductase chain, putative [TAIR10] CDS gene_syn F5M15.20, F5M15_20 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20460.1p transcript_id AT1G20460.1 protein_id AT1G20460.1p transcript_id AT1G20460.1
At1g20470	chr1:007094325	0.0	W/7094325-7094765	AT1G20470.1 CDS SAUR-like auxin-responsive protein family [TAIR10] CDS gene_syn F5M15.19, F5M15_19 go_component cellular_component|GO:0005575||ND go_process response to auxin stimulus|GO:0009733||ISS go_function molecular_function|GO:0003674||ND product SAUR-like auxin-responsive protein family note SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G76190.1); Has 1315 Blast hits to 1299 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1314; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G20470.1p transcript_id AT1G20470.1 protein_id AT1G20470.1p transcript_id AT1G20470.1
At1g20480	chr1:007094978	0.0	C/7094978-7095091,7095187-7095289,7095396-7095463,7095567-7095712,7095807-7097073	AT1G20480.1 CDS AMP-dependent synthetase and ligase family protein [TAIR10] CDS gene_syn F5M15.29, F5M15_29 go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_process phenylpropanoid metabolic process|GO:0009698||ISS go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS product AMP-dependent synthetase and ligase family protein note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1); Has 83252 Blast hits to 75672 proteins in 3756 species: Archae - 1173; Bacteria - 54045; Metazoa - 3530; Fungi - 4633; Plants - 2807; Viruses - 1; Other Eukaryotes - 17063 (source: NCBI BLink). protein_id AT1G20480.1p transcript_id AT1G20480.1 protein_id AT1G20480.1p transcript_id AT1G20480.1
AT1G20480	chr1:007094978	0.0	C/7094978-7095091,7095187-7095289,7095396-7095463,7095567-7095712,7095807-7097073	AT1G20480.2 AT1G20480.2 CDS AMP-dependent synthetase and ligase family protein
AT1G20480	chr1:007094978	0.0	C/7094978-7095091,7095187-7095289,7095396-7095463,7095567-7095712,7095807-7097073	AT1G20480.3 AT1G20480.3 CDS AMP-dependent synthetase and ligase family protein
At1g20490	chr1:007097958	0.0	C/7097958-7098073,7098445-7099672	AT1G20490.1 CDS AMP-dependent synthetase and ligase family protein [TAIR10] CDS gene_syn F5M15.28, F5M15_28 go_process metabolic process|GO:0008152||IEA go_process phenylpropanoid metabolic process|GO:0009698||ISS go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS product AMP-dependent synthetase and ligase family protein note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113; Bacteria - 45325; Metazoa - 2980; Fungi - 3725; Plants - 2277; Viruses - 1; Other Eukaryotes - 10584 (source: NCBI BLink). protein_id AT1G20490.1p transcript_id AT1G20490.1 protein_id AT1G20490.1p transcript_id AT1G20490.1
AT1G20490	chr1:007097958	0.0	C/7097958-7098073,7098445-7099672	AT1G20490.2 AT1G20490.2 CDS AMP-dependent synthetase and ligase family protein
At1g20500	chr1:007100502	0.0	C/7100502-7100615,7100733-7100835,7100951-7101018,7101103-7101248,7101626-7102847	AT1G20500.1 CDS AMP-dependent synthetase and ligase family protein [TAIR10] CDS gene_syn F5M15.18, F5M15_18 go_process metabolic process|GO:0008152||IEA go_process phenylpropanoid metabolic process|GO:0009698||ISS go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS product AMP-dependent synthetase and ligase family protein note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT5G38120.1); Has 82776 Blast hits to 75503 proteins in 3739 species: Archae - 1179; Bacteria - 53477; Metazoa - 3434; Fungi - 4583; Plants - 2754; Viruses - 1; Other Eukaryotes - 17348 (source: NCBI BLink). protein_id AT1G20500.1p transcript_id AT1G20500.1 protein_id AT1G20500.1p transcript_id AT1G20500.1
At1g20510	chr1:007103645	0.0	C/7103645-7103867,7103943-7104010,7104419-7104564,7104653-7105856	AT1G20510.1 CDS OPC-8:0 CoA ligase1 [TAIR10] CDS gene_syn F5M15.17, F5M15_17, OPC-8:0 CoA ligase1, OPCL1 gene OPCL1 go_component peroxisome|GO:0005777|17951448|IDA go_component peroxisome|GO:0005777|16963437|IDA go_process response to wounding|GO:0009611|17675405|IEP go_process jasmonic acid biosynthetic process|GO:0009695|16963437|IMP go_process phenylpropanoid metabolic process|GO:0009698||ISS go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS product OPC-8:0 CoA ligase1 note OPC-8:0 CoA ligase1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 85702 Blast hits to 78184 proteins in 3819 species: Archae - 1213; Bacteria - 55131; Metazoa - 3605; Fungi - 4761; Plants - 2762; Viruses - 1; Other Eukaryotes - 18229 (source: NCBI BLink). protein_id AT1G20510.1p transcript_id AT1G20510.1 protein_id AT1G20510.1p transcript_id AT1G20510.1
At1g20510	chr1:007103939	0.0	C/7103939-7104010,7104419-7104564,7104653-7105856	AT1G20510.2 CDS OPC-8:0 CoA ligase1 [TAIR10] CDS gene_syn F5M15.17, F5M15_17, OPC-8:0 CoA ligase1, OPCL1 gene OPCL1 go_component peroxisome|GO:0005777|17951448|IDA go_component peroxisome|GO:0005777|16963437|IDA go_process response to wounding|GO:0009611|17675405|IEP go_process jasmonic acid biosynthetic process|GO:0009695|16963437|IMP go_process phenylpropanoid metabolic process|GO:0009698||ISS go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS product OPC-8:0 CoA ligase1 note OPC-8:0 CoA ligase1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G20510.2p transcript_id AT1G20510.2 protein_id AT1G20510.2p transcript_id AT1G20510.2
AT1G20510	chr1:007104362	0.0	C/7104362-7104564,7104653-7105856	AT1G20510.3 AT1G20510.3 CDS OPC-8:0 CoA ligase1
At1g20515	chr1:007106165	0.0	W/7106165-7106211,7106882-7107977	AT1G20515.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G20520 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G20515.1
At1g20520	chr1:007106922	0.0	C/7106922-7107617	AT1G20520.1 CDS DUF241 domain protein, putative (DUF241) [TAIR10] CDS gene_syn F5M15.16, F5M15_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Arabidopsis protein of unknown function (DUF241) note Arabidopsis protein of unknown function (DUF241); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT1G76210.1); Has 416 Blast hits to 408 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20520.1p transcript_id AT1G20520.1 protein_id AT1G20520.1p transcript_id AT1G20520.1
At1g20530	chr1:007108370	0.0	C/7108370-7109009,7109088-7109311,7109397-7110377	AT1G20530.1 CDS girdin (DUF630 and DUF632) [TAIR10] CDS gene_syn F5M15.15, F5M15_15 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF630 and DUF632) note Protein of unknown function (DUF630 and DUF632); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT2G17110.1); Has 3752 Blast hits to 2914 proteins in 298 species: Archae - 59; Bacteria - 209; Metazoa - 1260; Fungi - 213; Plants - 622; Viruses - 0; Other Eukaryotes - 1389 (source: NCBI BLink). protein_id AT1G20530.1p transcript_id AT1G20530.1 protein_id AT1G20530.1p transcript_id AT1G20530.1
At1g20540	chr1:007112652	0.0	W/7112652-7112696,7112772-7112855,7112955-7113087,7113195-7113306,7113439-7113538,7113645-7113772,7113952-7114021,7114225-7114313,7114416-7114461,7114672-7114745,7114835-7114908,7114990-7115048,7115150-7115191	AT1G20540.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn F5M15.14, F5M15_14 go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 (TAIR:AT1G76260.1); Has 8926 Blast hits to 7393 proteins in 418 species: Archae - 0; Bacteria - 876; Metazoa - 3687; Fungi - 2097; Plants - 1353; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink). protein_id AT1G20540.1p transcript_id AT1G20540.1 protein_id AT1G20540.1p transcript_id AT1G20540.1
At1g20550	chr1:007115485	0.0	C/7115485-7115908,7116009-7116340,7116414-7116698,7116817-7117000,7117084-7117172,7117266-7117342,7117461-7117551,7117638-7117700,7117787-7117936	AT1G20550.1 CDS O-fucosyltransferase family protein [TAIR10] CDS gene_syn F5M15.13 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product O-fucosyltransferase family protein note O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G76270.1); Has 868 Blast hits to 809 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 868; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20550.1p transcript_id AT1G20550.1 protein_id AT1G20550.1p transcript_id AT1G20550.1
At1g20560	chr1:007119927	0.0	C/7119927-7121363	AT1G20560.2 CDS acyl activating enzyme 1 [TAIR10] CDS gene_syn AAE1, F5M15.12, F5M15_12, acyl activating enzyme 1 gene AAE1 go_process metabolic process|GO:0008152||IEA go_component peroxisome|GO:0005777|19329564|IDA go_function AMP binding|GO:0016208||ISS product acyl activating enzyme 1 note acyl activating enzyme 1 (AAE1); FUNCTIONS IN: AMP binding; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G17650.1); Has 73688 Blast hits to 67811 proteins in 3570 species: Archae - 1118; Bacteria - 49573; Metazoa - 3114; Fungi - 3286; Plants - 2213; Viruses - 1; Other Eukaryotes - 14383 (source: NCBI BLink). protein_id AT1G20560.2p transcript_id AT1G20560.2 protein_id AT1G20560.2p transcript_id AT1G20560.2
At1g20560	chr1:007119927	0.0	C/7119927-7121393,7121527-7121730	AT1G20560.1 CDS acyl activating enzyme 1 [TAIR10] CDS gene_syn AAE1, F5M15.12, F5M15_12, acyl activating enzyme 1 gene AAE1 go_process metabolic process|GO:0008152||IEA go_component peroxisome|GO:0005777|19329564|IDA go_function AMP binding|GO:0016208||ISS product acyl activating enzyme 1 note acyl activating enzyme 1 (AAE1); FUNCTIONS IN: AMP binding; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G17650.1); Has 77741 Blast hits to 70781 proteins in 3571 species: Archae - 1189; Bacteria - 50806; Metazoa - 3349; Fungi - 3424; Plants - 2387; Viruses - 1; Other Eukaryotes - 16585 (source: NCBI BLink). protein_id AT1G20560.1p transcript_id AT1G20560.1 protein_id AT1G20560.1p transcript_id AT1G20560.1
At1g20570	chr1:007122018	0.0	C/7122018-7122140,7122219-7122392,7122474-7122605,7122736-7122834,7123005-7123055,7123154-7123210,7123312-7123506,7123674-7123768,7123845-7123944,7124029-7124181,7124283-7125266,7125433-7125543,7125626-7125797,7125896-7125983,7126085-7126349,7126428-7126559	AT1G20570.1 CDS Spc97 / Spc98 family of spindle pole body (SBP) component [TAIR10] CDS gene_syn F5M15.11 go_component spindle pole|GO:0000922||IEA go_component microtubule organizing center|GO:0005815||IEA go_process microtubule cytoskeleton organization|GO:0000226||IEA go_function tubulin binding|GO:0015631||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product Spc97 / Spc98 family of spindle pole body (SBP) component note Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: transferase activity, transferring glycosyl groups, tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80260.1); Has 1016 Blast hits to 914 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 582; Fungi - 173; Plants - 165; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). protein_id AT1G20570.1p transcript_id AT1G20570.1 protein_id AT1G20570.1p transcript_id AT1G20570.1
AT1G20570	chr1:007122018	0.0	C/7122018-7122140,7122219-7122392,7122474-7122605,7122736-7122834,7123005-7123076,7123154-7123210,7123312-7123506,7123674-7123768,7123845-7123944,7124029-7124181,7124283-7125266,7125433-7125543,7125626-7125797,7125896-7125983,7126085-7126349,7126428-7126559	AT1G20570.2 AT1G20570.2 CDS Spc97 / Spc98 family of spindle pole body (SBP) component
AT1G20570	chr1:007122018	0.0	C/7122018-7122140,7122219-7122392,7122474-7122605,7122736-7122834,7123005-7123076,7123154-7123210,7123312-7123506,7123674-7123768,7123845-7123944,7124029-7124181,7124283-7125266,7125433-7125543,7125626-7125797,7125896-7125993,7126089-7126349,7126428-7126559	AT1G20570.3 AT1G20570.3 CDS Spc97 / Spc98 family of spindle pole body (SBP) component
AT1G20570	chr1:007123433	0.0	C/7123433-7123435,7123674-7123768,7123845-7123944,7124029-7124181,7124283-7125266,7125433-7125543,7125626-7125797,7125896-7125983,7126085-7126349,7126428-7126559	AT1G20570.4 AT1G20570.4 CDS Spc97 / Spc98 family of spindle pole body (SBP) component
At1g20575	chr1:007126987	0.0	C/7126987-7127091,7127189-7127303,7127391-7127555,7127646-7127671,7127748-7127824,7127906-7127939,7128034-7128133,7128559-7128677	AT1G20575.1 CDS Nucleotide-diphospho-sugar transferases superfamily protein [TAIR10] CDS go_component endoplasmic reticulum|GO:0005783||ISS go_process protein amino acid glycosylation|GO:0006486||ISS go_function dolichyl-phosphate beta-D-mannosyltransferase activity|GO:0004582||ISS go_function elongation factor-2 kinase activity|GO:0004686||ISS product Nucleotide-diphospho-sugar transferases superfamily protein note Nucleotide-diphospho-sugar transferases superfamily protein; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G39630.1); Has 22705 Blast hits to 22656 proteins in 2589 species: Archae - 933; Bacteria - 16103; Metazoa - 288; Fungi - 260; Plants - 98; Viruses - 23; Other Eukaryotes - 5000 (source: NCBI BLink). protein_id AT1G20575.1p transcript_id AT1G20575.1 protein_id AT1G20575.1p transcript_id AT1G20575.1
At1g20580	chr1:007128979	0.0	W/7128979-7129137,7129779-7129831,7129925-7129991,7130088-7130141,7130309-7130371	AT1G20580.1 CDS Small nuclear ribonucleoprotein family protein [TAIR10] CDS gene_syn F5M15.9, F5M15_9 go_component nucleolus|GO:0005730|15496452|IDA go_component nucleus|GO:0005634||ISS go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS go_function molecular_function|GO:0003674||ND product Small nuclear ribonucleoprotein family protein note Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1253 Blast hits to 1253 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 336; Plants - 223; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink). protein_id AT1G20580.1p transcript_id AT1G20580.1 protein_id AT1G20580.1p transcript_id AT1G20580.1
At1g20590	chr1:007131169	0.0	C/7131169-7131322,7131416-7131594,7131693-7131791,7131878-7132069,7132295-7132465	AT1G20590.1 CDS cyclin [TAIR10] CDS gene_syn F5M15.8, F5M15_8 go_component nucleus|GO:0005634||IEA go_component endomembrane system|GO:0012505||IEA go_process regulation of cell cycle|GO:0051726||ISS go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS product Cyclin family protein note Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;3 (TAIR:AT1G20610.1); Has 3281 Blast hits to 3278 proteins in 328 species: Archae - 0; Bacteria - 0; Metazoa - 1609; Fungi - 468; Plants - 793; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink). protein_id AT1G20590.1p transcript_id AT1G20590.1 protein_id AT1G20590.1p transcript_id AT1G20590.1
At1g20600	chr1:007133111	0.0	W/7133111-7133752,7134166-7134237	AT1G20600.1 CDS AP2/B3-like transcriptional factor family protein [TAIR10] CDS gene_syn F5M15.7, F5M15_7 go_component membrane|GO:0016020|17432890|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||IEA product AP2/B3-like transcriptional factor family protein note AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1); Has 77 Blast hits to 77 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G20600.1p transcript_id AT1G20600.1 protein_id AT1G20600.1p transcript_id AT1G20600.1
At1g20610	chr1:007135073	0.0	C/7135073-7135205,7135289-7135467,7135566-7135664,7135751-7135972,7136063-7136152,7136264-7136398,7136481-7136627,7136710-7136758,7136843-7136890,7136993-7137125,7137219-7137273	AT1G20610.1 CDS Cyclin B2;3 [TAIR10] CDS gene_syn CYCB2;3, Cyclin B2;3, F5M15.6 gene CYCB2;3 go_component nucleus|GO:0005634||IEA go_process regulation of cell cycle|GO:0051726||ISS go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS product Cyclin B2;3 note Cyclin B2;3 (CYCB2;3); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN B2;4 (TAIR:AT1G76310.1); Has 4405 Blast hits to 4396 proteins in 374 species: Archae - 0; Bacteria - 7; Metazoa - 2039; Fungi - 549; Plants - 1150; Viruses - 30; Other Eukaryotes - 630 (source: NCBI BLink). protein_id AT1G20610.1p transcript_id AT1G20610.1 protein_id AT1G20610.1p transcript_id AT1G20610.1
At1g20620	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.1 CDS catalase 3 [TAIR10] CDS gene_syn ATCAT3, CAT3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2, catalase 3 gene CAT3 function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. go_component cell wall|GO:0005618|16287169|IDA go_component vacuole|GO:0005773|15539469|IDA go_component peroxisome|GO:0005777|12154131|IDA go_component peroxisome|GO:0005777|17951448|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component apoplast|GO:0048046|18538804|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component mitochondrion|GO:0005739|14671022|IDA go_component peroxisome|GO:0005777|8819328|TAS go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP go_process response to cold|GO:0009409|18230142|IEP go_process response to light stimulus|GO:0009416|18230142|IEP go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS go_function catalase activity|GO:0004096|8819328|ISS go_function catalase activity|GO:0004096||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product catalase 3 note catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 11 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 6176 Blast hits to 6156 proteins in 1860 species: Archae - 22; Bacteria - 4351; Metazoa - 678; Fungi - 546; Plants - 456; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G20620.1p transcript_id AT1G20620.1 protein_id AT1G20620.1p transcript_id AT1G20620.1
At1g20620	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146155-7146193	AT1G20620.5 CDS catalase 3 [TAIR10] CDS gene_syn ATCAT3, CAT3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2, catalase 3 gene CAT3 function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. go_component cell wall|GO:0005618|16287169|IDA go_component vacuole|GO:0005773|15539469|IDA go_component peroxisome|GO:0005777|12154131|IDA go_component peroxisome|GO:0005777|17951448|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component apoplast|GO:0048046|18538804|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component mitochondrion|GO:0005739|14671022|IDA go_component peroxisome|GO:0005777|8819328|TAS go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP go_process response to cold|GO:0009409|18230142|IEP go_process response to light stimulus|GO:0009416|18230142|IEP go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS go_function catalase activity|GO:0004096|8819328|ISS go_function catalase activity|GO:0004096||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product catalase 3 note catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G20620.5p transcript_id AT1G20620.5 protein_id AT1G20620.5p transcript_id AT1G20620.5
At1g20620	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145807	AT1G20620.2 CDS catalase 3 [TAIR10] CDS gene_syn ATCAT3, CAT3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2, catalase 3 gene CAT3 function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. go_component cell wall|GO:0005618|16287169|IDA go_component vacuole|GO:0005773|15539469|IDA go_component peroxisome|GO:0005777|12154131|IDA go_component peroxisome|GO:0005777|17951448|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component apoplast|GO:0048046|18538804|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component mitochondrion|GO:0005739|14671022|IDA go_component peroxisome|GO:0005777|8819328|TAS go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP go_process response to cold|GO:0009409|18230142|IEP go_process response to light stimulus|GO:0009416|18230142|IEP go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS go_function catalase activity|GO:0004096|8819328|ISS go_function catalase activity|GO:0004096||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product catalase 3 note catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G20620.2p transcript_id AT1G20620.2 protein_id AT1G20620.2p transcript_id AT1G20620.2
AT1G20620	chr1:007143914	0.0	W/7143914-7144105,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.6 AT1G20620.6 CDS catalase 3
At1g20620	chr1:007144692	0.0	W/7144692-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.4 CDS catalase 3 [TAIR10] CDS gene_syn ATCAT3, CAT3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2, catalase 3 gene CAT3 function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. go_component cell wall|GO:0005618|16287169|IDA go_component vacuole|GO:0005773|15539469|IDA go_component peroxisome|GO:0005777|12154131|IDA go_component peroxisome|GO:0005777|17951448|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component apoplast|GO:0048046|18538804|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component mitochondrion|GO:0005739|14671022|IDA go_component peroxisome|GO:0005777|8819328|TAS go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP go_process response to cold|GO:0009409|18230142|IEP go_process response to light stimulus|GO:0009416|18230142|IEP go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS go_function catalase activity|GO:0004096|8819328|ISS go_function catalase activity|GO:0004096||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product catalase 3 note catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G20620.4p transcript_id AT1G20620.4 protein_id AT1G20620.4p transcript_id AT1G20620.4
AT1G20620	chr1:007144692	0.0	W/7144692-7144736,7144829-7145716	AT1G20620.7 AT1G20620.7 CDS catalase 3
At1g20630	chr1:007146812	0.0	W/7146812-7146826,7147413-7147509,7147783-7148060,7148239-7149015,7149106-7149195,7149286-7149353,7149456-7149609	AT1G20630.1 CDS catalase 1 [TAIR10] CDS gene_syn CAT1, CATALASE 1, F5M15.31, F5M15_31, catalase 1 gene CAT1 function Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2. go_component cell wall|GO:0005618|16287169|IDA go_component peroxisome|GO:0005777|17951448|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component mitochondrion|GO:0005739|14671022|IDA go_component peroxisome|GO:0005777|12943550|TAS go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP go_process response to light stimulus|GO:0009416|15608336|IEP go_process response to light stimulus|GO:0009416|9214587|IEP go_process response to abscisic acid stimulus|GO:0009737|18248592|IEP go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP go_process response to hydrogen peroxide|GO:0042542|18248592|IEP go_function catalase activity|GO:0004096|9214587|ISS go_function catalase activity|GO:0004096||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product catalase 1 note catalase 1 (CAT1); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, cytosolic ribosome, cell wall, peroxisome, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 6108 Blast hits to 6088 proteins in 1842 species: Archae - 22; Bacteria - 4283; Metazoa - 677; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). protein_id AT1G20630.1p transcript_id AT1G20630.1 protein_id AT1G20630.1p transcript_id AT1G20630.1
At1g20640	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.1 CDS Plant regulator RWP-RK family protein [TAIR10] CDS gene_syn F5M15.4 go_process nodulation|GO:0009877||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Plant regulator RWP-RK family protein note Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1); Has 665 Blast hits to 585 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 595; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). protein_id AT1G20640.1p transcript_id AT1G20640.1 protein_id AT1G20640.1p transcript_id AT1G20640.1
At1g20640	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.2 CDS Plant regulator RWP-RK family protein [TAIR10] CDS gene_syn F5M15.4 go_process nodulation|GO:0009877||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Plant regulator RWP-RK family protein note Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G20640.2p transcript_id AT1G20640.2 protein_id AT1G20640.2p transcript_id AT1G20640.2
AT1G20640	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.3 AT1G20640.3 CDS Plant regulator RWP-RK family protein
At1g20650	chr1:007158422	0.0	C/7158422-7158682,7158765-7159156,7159257-7159446,7159540-7159694,7159785-7159832,7159923-7160022	AT1G20650.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F5M15.3 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function protein kinase activity|GO:0004672||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G76370.1); Has 115469 Blast hits to 114023 proteins in 4226 species: Archae - 107; Bacteria - 13502; Metazoa - 42790; Fungi - 9725; Plants - 32710; Viruses - 380; Other Eukaryotes - 16255 (source: NCBI BLink). protein_id AT1G20650.1p transcript_id AT1G20650.1 protein_id AT1G20650.1p transcript_id AT1G20650.1
At1g20657	chr1:007161783	0.0	C/7161783-7161799,7161868-7162558	AT1G20657.1 CDS F-box/associated interaction domain protein [TAIR10] pseudogene
At1g20670	chr1:007164537	0.0	C/7164537-7165217,7165292-7165440,7165530-7165878,7165963-7166031,7166425-7166523,7166604-7166649,7166751-7166829,7166956-7166992,7167484-7167933	AT1G20670.1 CDS DNA-binding bromodomain-containing protein [TAIR10] CDS gene_syn F2D10.15, F2D10_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function DNA binding|GO:0003677||ISS product DNA-binding bromodomain-containing protein note DNA-binding bromodomain-containing protein; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G76380.2); Has 11096 Blast hits to 8233 proteins in 323 species: Archae - 0; Bacteria - 121; Metazoa - 4363; Fungi - 1457; Plants - 677; Viruses - 7; Other Eukaryotes - 4471 (source: NCBI BLink). protein_id AT1G20670.1p transcript_id AT1G20670.1 protein_id AT1G20670.1p transcript_id AT1G20670.1
At1g20680	chr1:007169382	0.0	W/7169382-7169464,7169576-7169762,7169846-7170070,7170209-7170367,7170450-7170587	AT1G20680.2 CDS transport/golgi organization-like protein (DUF833) [TAIR10] CDS gene_syn F2D10.17, F2D10_17 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF833) note Protein of unknown function (DUF833); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20730.1). protein_id AT1G20680.2p transcript_id AT1G20680.2 protein_id AT1G20680.2p transcript_id AT1G20680.2
At1g20680	chr1:007169402	0.0	W/7169402-7169498,7169566-7169762,7169846-7170070,7170209-7170367,7170450-7170587	AT1G20680.1 CDS transport/golgi organization-like protein (DUF833) [TAIR10] CDS gene_syn F2D10.17, F2D10_17 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF833) note Protein of unknown function (DUF833); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20740.1); Has 128 Blast hits to 124 proteins in 28 species: Archae - 0; Bacteria - 24; Metazoa - 2; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G20680.1p transcript_id AT1G20680.1 protein_id AT1G20680.1p transcript_id AT1G20680.1
AT1G20683	chr1:007172575	0.0	W/7172575-7172592,7172704-7172832	AT1G20683.1 AT1G20683.1 CDS hypothetical protein
AT1G20687	chr1:007173015	0.0	W/7173015-7173134,7173224-7173340	AT1G20687.1 AT1G20687.1 CDS hypothetical protein
At1g20691	chr1:007174584	0.0	C/7174584-7176453	AT1G20691.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G20690 product other RNA transcript_id AT1G20691.1
At1g20690	chr1:007175086	0.0	W/7175086-7175808	AT1G20690.1 CDS SWI-SNF-related chromatin binding protein [TAIR10] CDS gene_syn F2D10.18, F2D10_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product SWI-SNF-related chromatin binding protein note SWI-SNF-related chromatin binding protein; BEST Arabidopsis thaliana protein match is: SWI-SNF-related chromatin binding protein (TAIR:AT1G20240.1); Has 53 Blast hits to 49 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20690.1p transcript_id AT1G20690.1 protein_id AT1G20690.1p transcript_id AT1G20690.1
At1g20693	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178470-7178487	AT1G20693.1 CDS high mobility group B2 [TAIR10] CDS gene_syn HIGH MOBILITY GROUP BETA 1, HMG BETA 1, HMGB2, NFD02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, high mobility group B2 gene HMGB2 function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. go_component chromatin|GO:0000785|12653554|TAS go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS go_function DNA binding|GO:0003677|9461286|IDA go_function DNA binding|GO:0003677|9461286|ISS go_function chromatin binding|GO:0003682|12653554|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function structural constituent of chromatin|GO:0030527|12653554|TAS product high mobility group B2 note high mobility group B2 (HMGB2); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3); Has 7209 Blast hits to 6316 proteins in 714 species: Archae - 2; Bacteria - 5; Metazoa - 5374; Fungi - 532; Plants - 604; Viruses - 9; Other Eukaryotes - 683 (source: NCBI BLink). protein_id AT1G20693.1p transcript_id AT1G20693.1 protein_id AT1G20693.1p transcript_id AT1G20693.1
At1g20693	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178473-7178487	AT1G20693.3 CDS high mobility group B2 [TAIR10] CDS gene_syn HIGH MOBILITY GROUP BETA 1, HMG BETA 1, HMGB2, NFD02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, high mobility group B2 gene HMGB2 function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. go_component chromatin|GO:0000785|12653554|TAS go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS go_function DNA binding|GO:0003677|9461286|IDA go_function DNA binding|GO:0003677|9461286|ISS go_function chromatin binding|GO:0003682|12653554|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function structural constituent of chromatin|GO:0030527|12653554|TAS product high mobility group B2 note high mobility group B2 (HMGB2); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3); Has 7109 Blast hits to 6235 proteins in 712 species: Archae - 0; Bacteria - 5; Metazoa - 5360; Fungi - 490; Plants - 580; Viruses - 7; Other Eukaryotes - 667 (source: NCBI BLink). protein_id AT1G20693.3p transcript_id AT1G20693.3 protein_id AT1G20693.3p transcript_id AT1G20693.3
At1g20693	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178476-7178487	AT1G20693.2 CDS high mobility group B2 [TAIR10] CDS gene_syn HIGH MOBILITY GROUP BETA 1, HMG BETA 1, HMGB2, NFD02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, high mobility group B2 gene HMGB2 function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. go_component chromatin|GO:0000785|12653554|TAS go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS go_function DNA binding|GO:0003677|9461286|IDA go_function DNA binding|GO:0003677|9461286|ISS go_function chromatin binding|GO:0003682|12653554|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function structural constituent of chromatin|GO:0030527|12653554|TAS product high mobility group B2 note high mobility group B2 (HMGB2); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G20693.2p transcript_id AT1G20693.2 protein_id AT1G20693.2p transcript_id AT1G20693.2
At1g20696	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180754,7180983-7181069,7181157-7181174	AT1G20696.1 CDS high mobility group B3 [TAIR10] CDS gene_syn HMGB3, NFD03, NFD3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR, high mobility group B3 gene HMGB3 function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. go_component chromatin|GO:0000785|12653554|TAS go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS go_function DNA binding|GO:0003677|9461286|IDA go_function DNA binding|GO:0003677|9461286|ISS go_function chromatin binding|GO:0003682|12653554|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function structural constituent of chromatin|GO:0030527|12653554|TAS product high mobility group B3 note high mobility group B3 (HMGB3); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.2); Has 5914 Blast hits to 5088 proteins in 514 species: Archae - 0; Bacteria - 0; Metazoa - 4343; Fungi - 437; Plants - 569; Viruses - 4; Other Eukaryotes - 561 (source: NCBI BLink). protein_id AT1G20696.1p transcript_id AT1G20696.1 protein_id AT1G20696.1p transcript_id AT1G20696.1
At1g20696	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180760,7180990-7181069,7181157-7181193	AT1G20696.2 CDS high mobility group B3 [TAIR10] CDS gene_syn HMGB3, NFD03, NFD3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR, high mobility group B3 gene HMGB3 function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. go_component chromatin|GO:0000785|12653554|TAS go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS go_function DNA binding|GO:0003677|9461286|IDA go_function DNA binding|GO:0003677|9461286|ISS go_function chromatin binding|GO:0003682|12653554|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function structural constituent of chromatin|GO:0030527|12653554|TAS product high mobility group B3 note high mobility group B3 (HMGB3); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G20696.2p transcript_id AT1G20696.2 protein_id AT1G20696.2p transcript_id AT1G20696.2
AT1G20696	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180835	AT1G20696.5 AT1G20696.5 CDS high mobility group B3
AT1G20696	chr1:007180357	0.0	W/7180357-7180425,7180537-7180581,7180674-7180754,7180983-7181069,7181157-7181174	AT1G20696.4 AT1G20696.4 CDS high mobility group B3
At1g20696	chr1:007180357	0.0	W/7180357-7180425,7180537-7180581,7180674-7180754,7180983-7181073,7181160-7181170	AT1G20696.3 CDS high mobility group B3 [TAIR10] CDS gene_syn HMGB3, NFD03, NFD3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR, high mobility group B3 gene HMGB3 function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. go_component chromatin|GO:0000785|12653554|TAS go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS go_function DNA binding|GO:0003677|9461286|IDA go_function DNA binding|GO:0003677|9461286|ISS go_function chromatin binding|GO:0003682|12653554|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function structural constituent of chromatin|GO:0030527|12653554|TAS product high mobility group B3 note high mobility group B3 (HMGB3); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.2); Has 5742 Blast hits to 4932 proteins in 507 species: Archae - 0; Bacteria - 0; Metazoa - 4274; Fungi - 383; Plants - 553; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink). protein_id AT1G20696.3p transcript_id AT1G20696.3 protein_id AT1G20696.3p transcript_id AT1G20696.3
At1g20700	chr1:007182558	0.0	W/7182558-7182762,7183349-7183735,7183823-7183866	AT1G20700.1 CDS WUSCHEL related homeobox 14 [TAIR10] CDS gene_syn ATWOX14, F2D10.19, F2D10_19, WOX14, WUSCHEL RELATED HOMEOBOX 14, WUSCHEL related homeobox 14 gene WOX14 function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process primary shoot apical meristem specification|GO:0010072|18653559|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product WUSCHEL related homeobox 14 note WUSCHEL related homeobox 14 (WOX14); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 10 (TAIR:AT1G20710.1); Has 657 Blast hits to 657 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 12; Plants - 530; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G20700.1p transcript_id AT1G20700.1 protein_id AT1G20700.1p transcript_id AT1G20700.1
AT1G20700	chr1:007182558	0.0	W/7182558-7182762,7183349-7183752	AT1G20700.3 AT1G20700.3 CDS WUSCHEL related homeobox 14
AT1G20700	chr1:007183330	0.0	W/7183330-7183735,7183823-7183866	AT1G20700.2 AT1G20700.2 CDS WUSCHEL related homeobox 14
At1g20710	chr1:007184485	0.0	W/7184485-7184641,7184733-7185128,7185227-7185267	AT1G20710.1 CDS WUSCHEL related homeobox 10 [TAIR10] CDS gene_syn F2D10.20, F2D10_20, WOX10, WUSCHEL related homeobox 10 gene WOX10 function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_process regulation of transcription|GO:0045449||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product WUSCHEL related homeobox 10 note WUSCHEL related homeobox 10 (WOX10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 14 (TAIR:AT1G20700.1); Has 658 Blast hits to 658 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 6; Plants - 551; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G20710.1p transcript_id AT1G20710.1 protein_id AT1G20710.1p transcript_id AT1G20710.1
At1g20720	chr1:007185658	0.0	C/7185658-7185702,7185782-7185904,7186069-7186140,7186248-7186432,7186715-7187121,7187302-7187507,7187594-7187728,7187802-7187926,7188018-7188065,7188159-7188280,7188366-7188394,7188499-7188543,7188720-7188901,7188986-7189142,7189260-7189343,7189418-7189511,7189855-7189963,7190063-7190152,7190241-7190319,7190403-7190490,7190880-7190950,7191031-7191104,7191191-7191252,7191380-7191521,7191600-7191700,7191792-7191839,7191924-7191988,7192088-7192163,7192256-7192337,7192413-7192794	AT1G20720.1 CDS RAD3-like DNA-binding helicase protein [TAIR10] CDS gene_syn F2D10.21, F2D10_21 go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function ATP-dependent DNA helicase activity|GO:0004003||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA go_component mitochondrion|GO:0005739|14671022|IDA product RAD3-like DNA-binding helicase protein note RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1); Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243; Bacteria - 679; Metazoa - 737; Fungi - 397; Plants - 210; Viruses - 5; Other Eukaryotes - 592 (source: NCBI BLink). protein_id AT1G20720.1p transcript_id AT1G20720.1 protein_id AT1G20720.1p transcript_id AT1G20720.1
AT1G20720	chr1:007185658	0.0	C/7185658-7185702,7185782-7185904,7186069-7186140,7186248-7187121,7187302-7187507,7187594-7187728,7187802-7187926,7188018-7188065,7188159-7188280,7188366-7188394,7188499-7188543,7188720-7188901,7188986-7189142,7189260-7189343,7189418-7189511,7189855-7189963,7190063-7190152,7190241-7190319,7190403-7190490,7190880-7190950,7191031-7191104,7191191-7191252,7191380-7191521,7191600-7191700,7191792-7191839,7191924-7191988,7192088-7192163,7192256-7192337,7192413-7192794	AT1G20720.2 AT1G20720.2 CDS RAD3-like DNA-binding helicase protein
At1g20730	chr1:007194256	0.0	W/7194256-7194335,7194425-7194608,7194684-7194905,7195009-7195155,7195263-7195400	AT1G20730.1 CDS transport/golgi organization-like protein, putative (DUF833) [TAIR10] CDS gene_syn F2D10.22, F2D10_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF833) note Protein of unknown function (DUF833); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20740.1); Has 432 Blast hits to 427 proteins in 156 species: Archae - 0; Bacteria - 238; Metazoa - 13; Fungi - 0; Plants - 127; Viruses - 2; Other Eukaryotes - 52 (source: NCBI BLink). protein_id AT1G20730.1p transcript_id AT1G20730.1 protein_id AT1G20730.1p transcript_id AT1G20730.1
At1g20735	chr1:007197491	0.0	W/7197491-7198681	AT1G20735.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1). protein_id AT1G20735.1p transcript_id AT1G20735.1 protein_id AT1G20735.1p transcript_id AT1G20735.1
AT1G20740	chr1:007200374	0.0	W/7200374-7200453,7200542-7200728,7200807-7201031,7201146-7201289,7201398-7201538	AT1G20740.2 AT1G20740.2 CDS transport/golgi organization-like protein (DUF833)
At1g20740	chr1:007200394	0.0	W/7200394-7200457,7200502-7200728,7200807-7201031,7201146-7201289,7201398-7201538	AT1G20740.1 CDS transport/golgi organization-like protein (DUF833) [TAIR10] CDS gene_syn F2D10.23, F2D10_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF833) note Protein of unknown function (DUF833); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20730.1); Has 322 Blast hits to 322 proteins in 133 species: Archae - 0; Bacteria - 194; Metazoa - 18; Fungi - 2; Plants - 74; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). protein_id AT1G20740.1p transcript_id AT1G20740.1 protein_id AT1G20740.1p transcript_id AT1G20740.1
At1g20750	chr1:007203302	0.0	C/7203302-7203454,7203562-7203633,7203714-7204530,7204628-7204848,7204927-7205060,7205112-7205281,7205357-7205385,7205497-7205541,7205655-7205836,7205919-7206075,7206177-7206260,7206333-7206426,7206513-7206615,7206690-7206779,7206871-7206949,7207033-7207120,7207208-7207278,7207366-7207439,7207511-7207603,7207857-7207957,7208049-7208096,7208185-7208249,7208349-7208424,7208516-7208579,7208674-7208998	AT1G20750.1 CDS RAD3-like DNA-binding helicase protein [TAIR10] CDS gene_syn F2D10.24, F2D10_24 go_component chloroplast|GO:0009507|15028209|IDA go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA go_function nucleic acid binding|GO:0003676||IEA go_function DNA binding|GO:0003677||IEA go_function ATP-dependent DNA helicase activity|GO:0004003||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA product RAD3-like DNA-binding helicase protein note RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 2571 Blast hits to 1958 proteins in 520 species: Archae - 146; Bacteria - 396; Metazoa - 797; Fungi - 439; Plants - 210; Viruses - 2; Other Eukaryotes - 581 (source: NCBI BLink). protein_id AT1G20750.1p transcript_id AT1G20750.1 protein_id AT1G20750.1p transcript_id AT1G20750.1
At1g20760	chr1:007209515	0.0	W/7209515-7209655,7210007-7211048,7211328-7211546,7211632-7211849,7211938-7212012,7212494-7212565,7212644-7212742,7213030-7213101,7213192-7213306,7213419-7213487,7213586-7213944,7214195-7214773	AT1G20760.1 CDS Calcium-binding EF hand family protein [TAIR10] CDS gene_syn F2D10.25, F2D10_25 go_component plasma membrane|GO:0005886|17317660|IDA go_function calcium ion binding|GO:0005509||IEA go_function calcium ion binding|GO:0005509||ISS product Calcium-binding EF hand family protein note Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G21630.1); Has 12017 Blast hits to 4944 proteins in 443 species: Archae - 20; Bacteria - 3590; Metazoa - 3650; Fungi - 1736; Plants - 412; Viruses - 16; Other Eukaryotes - 2593 (source: NCBI BLink). protein_id AT1G20760.1p transcript_id AT1G20760.1 protein_id AT1G20760.1p transcript_id AT1G20760.1
At1g20770	chr1:007215345	0.0	C/7215345-7215421,7215505-7215592,7215683-7215732,7215816-7215962,7216085-7216202,7216481-7216648	AT1G20770.1 CDS coiled-coil protein [TAIR10] CDS gene_syn F2D10.26, F2D10_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 59 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20770.1p transcript_id AT1G20770.1 protein_id AT1G20770.1p transcript_id AT1G20770.1
AT1G20770	chr1:007215733	0.0	C/7215733-7215962,7216085-7216202,7216481-7216648	AT1G20770.2 AT1G20770.2 CDS coiled-coil protein
At1g20780	chr1:007217812	0.0	W/7217812-7218348,7218445-7218754,7219051-7220609	AT1G20780.1 CDS senescence-associated E3 ubiquitin ligase 1 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 44, ATPUB44, F2D10.27, F2D10_27, PLANT U-BOX 44, PUB44, SAUL1, senescence-associated E3 ubiquitin ligase 1 gene SAUL1 function Encodes a protein containing a U-box and an ARM domain. go_component plasma membrane|GO:0005886|17644812|IDA go_process regulation of abscisic acid biosynthetic process|GO:0010115|19309463|IMP go_process leaf senescence|GO:0010150|19309463|IMP go_process regulation of chlorophyll catabolic process|GO:0010271|19309463|IMP go_process regulation of chlorophyll biosynthetic process|GO:0010380|19309463|IMP go_function ubiquitin-protein ligase activity|GO:0004842|19309463|IDA product senescence-associated E3 ubiquitin ligase 1 note senescence-associated E3 ubiquitin ligase 1 (SAUL1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of chlorophyll catabolic process, regulation of chlorophyll biosynthetic process, leaf senescence, regulation of abscisic acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G76390.2); Has 2790 Blast hits to 2660 proteins in 201 species: Archae - 0; Bacteria - 20; Metazoa - 434; Fungi - 161; Plants - 1969; Viruses - 3; Other Eukaryotes - 203 (source: NCBI BLink). protein_id AT1G20780.1p transcript_id AT1G20780.1 protein_id AT1G20780.1p transcript_id AT1G20780.1
AT1G20780	chr1:007217812	0.0	W/7217812-7218348,7218445-7218754,7219051-7220609	AT1G20780.2 AT1G20780.2 CDS senescence-associated E3 ubiquitin ligase 1
AT1G20780	chr1:007217812	0.0	W/7217812-7218348,7218445-7218754,7219051-7220609	AT1G20780.3 AT1G20780.3 CDS senescence-associated E3 ubiquitin ligase 1
At1g20790	chr1:007220961	0.0	C/7220961-7222268	AT1G20790.1 CDS F-box family protein [TAIR10] CDS gene_syn F2D10.28, F2D10_28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1); Has 1819 Blast hits to 716 proteins in 166 species: Archae - 2; Bacteria - 445; Metazoa - 392; Fungi - 63; Plants - 395; Viruses - 75; Other Eukaryotes - 447 (source: NCBI BLink). protein_id AT1G20790.1p transcript_id AT1G20790.1 protein_id AT1G20790.1p transcript_id AT1G20790.1
At1g20795	chr1:007226310	0.0	C/7226310-7227566	AT1G20795.1 CDS F-box family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20800.2); Has 127 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20795.1p transcript_id AT1G20795.1 protein_id AT1G20795.1p transcript_id AT1G20795.1
At1g20800	chr1:007228718	0.0	C/7228718-7229648,7231053-7231600	AT1G20800.1 CDS F-box family protein [TAIR10] CDS gene_syn F2D10.30, F2D10_30 function F-box family protein go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1); Has 109 Blast hits to 52 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20800.1p transcript_id AT1G20800.1 protein_id AT1G20800.1p transcript_id AT1G20800.1
At1g20800	chr1:007228718	0.0	C/7228718-7229782,7229866-7230240	AT1G20800.2 CDS F-box family protein [TAIR10] CDS gene_syn F2D10.30, F2D10_30 function F-box family protein go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1). protein_id AT1G20800.2p transcript_id AT1G20800.2 protein_id AT1G20800.2p transcript_id AT1G20800.2
At1g20810	chr1:007232025	0.0	W/7232025-7232289,7232551-7232621,7232717-7232803,7232883-7233032,7233119-7233178,7233302-7233367	AT1G20810.1 CDS FKBP-like peptidyl-prolyl cis-trans isomerase family protein [TAIR10] CDS gene_syn F2D10.32, F2D10_32 go_component chloroplast|GO:0009507|18431481|IDA go_component thylakoid lumen|GO:0031977|11719511|IDA go_process protein folding|GO:0006457||IEA go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA go_component chloroplast thylakoid lumen|GO:0009543||ISS go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS go_function FK506 binding|GO:0005528||ISS product FKBP-like peptidyl-prolyl cis-trans isomerase family protein note FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G10060.1); Has 1763 Blast hits to 1744 proteins in 606 species: Archae - 0; Bacteria - 1027; Metazoa - 95; Fungi - 57; Plants - 263; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink). protein_id AT1G20810.1p transcript_id AT1G20810.1 protein_id AT1G20810.1p transcript_id AT1G20810.1
AT1G20810	chr1:007232025	0.0	W/7232025-7232289,7232551-7232621,7232717-7232803,7232883-7233032,7233119-7233235	AT1G20810.2 AT1G20810.2 CDS FKBP-like peptidyl-prolyl cis-trans isomerase family protein
At1g20816	chr1:007233814	0.0	W/7233814-7233906,7234275-7234349,7234430-7234582,7234671-7234769,7234858-7234941	AT1G20816.1 CDS outer envelope pore-like protein [TAIR10] CDS gene_syn F2D10.33, F2D10_33 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76405.2); Has 52 Blast hits to 52 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G20816.1p transcript_id AT1G20816.1 protein_id AT1G20816.1p transcript_id AT1G20816.1
At1g20823	chr1:007238880	0.0	W/7238880-7239473	AT1G20823.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F2D10.34, F2D10_34 go_function zinc ion binding|GO:0008270||IEA go_process response to chitin|GO:0010200|17722694|IEP go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink). protein_id AT1G20823.1p transcript_id AT1G20823.1 protein_id AT1G20823.1p transcript_id AT1G20823.1
At1g20820	chr1:007242761	0.0	C/7242761-7242832	AT1G20820.1 [TAIR10] tRNA gene_syn 61258.TRNA-TRP-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Trp (anticodon: CCA) transcript_id AT1G20820.1
At1g20830	chr1:007242933	0.0	W/7242933-7242980,7243103-7243384,7243754-7243926,7244095-7244482,7244578-7244736	AT1G20830.1 CDS multiple chloroplast division site 1 [TAIR10] CDS gene_syn F2D10.35, F2D10_35, MCD1, MULTIPLE CHLOROPLAST DIVISION SITE 1 gene MCD1 function Encodes MCD1 (MULTIPLE CHLOROPLAST DIVISION SITE 1). Determines the site of chloroplast division in concert with MinD (AT5G24020). go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast inner membrane|GO:0009706|19135368|IDA go_process chloroplast fission|GO:0010020|19135368|IMP go_function molecular_function|GO:0003674||ND product multiple chloroplast division site 1 note MULTIPLE CHLOROPLAST DIVISION SITE 1 (MCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20830.1p transcript_id AT1G20830.1 protein_id AT1G20830.1p transcript_id AT1G20830.1
AT1G20830	chr1:007243352	0.0	W/7243352-7243384,7243754-7243926,7244095-7244482,7244578-7244736	AT1G20830.2 AT1G20830.2 CDS multiple chloroplast division site 1
At1g20840	chr1:007245107	0.0	C/7245107-7245557,7245641-7245828,7245923-7246848,7246927-7247487,7247596-7247674	AT1G20840.1 CDS tonoplast monosaccharide transporter1 [TAIR10] CDS gene_syn F9H16.18, F9H16_18, TMT1, tonoplast monosaccharide transporter1 gene TMT1 function The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plant-type vacuole membrane|GO:0009705|17158605|IDA go_component membrane|GO:0016020||ISS go_process response to cold|GO:0009409|17158605|IEP go_process response to water deprivation|GO:0009414|17158605|IEP go_process response to nematode|GO:0009624|16478044|IEP go_process response to salt stress|GO:0009651|17158605|IEP go_process response to sucrose stimulus|GO:0009744|17158605|IEP go_process response to glucose stimulus|GO:0009749|17158605|IEP go_function nucleoside transmembrane transporter activity|GO:0005337||ISS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product tonoplast monosaccharide transporter1 note tonoplast monosaccharide transporter1 (TMT1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter2 (TAIR:AT4G35300.4); Has 47782 Blast hits to 35006 proteins in 2411 species: Archae - 763; Bacteria - 22324; Metazoa - 7189; Fungi - 11789; Plants - 3723; Viruses - 0; Other Eukaryotes - 1994 (source: NCBI BLink). protein_id AT1G20840.1p transcript_id AT1G20840.1 protein_id AT1G20840.1p transcript_id AT1G20840.1
AT1G20840	chr1:007245107	0.0	C/7245107-7245557,7245641-7245828,7245923-7246848,7246927-7247487,7247596-7247674	AT1G20840.2 AT1G20840.2 CDS tonoplast monosaccharide transporter1
At1g20850	chr1:007252208	0.0	W/7252208-7252685,7252772-7253007,7253090-7253230,7253322-7253537	AT1G20850.1 CDS xylem cysteine peptidase 2 [TAIR10] CDS gene_syn F9H16.17, F9H16_17, PAPAIN-TYPE CYSTEINE ENDOPEPTIDASE XCP2, XCP2, xylem cysteine peptidase 2 gene XCP2 go_component cell wall|GO:0005618|15593128|IDA go_process proteolysis|GO:0006508||ISS go_process developmental programmed cell death|GO:0010623|18573193|IMP go_function peptidase activity|GO:0008233|10889267|ISS go_function cysteine-type peptidase activity|GO:0008234||ISS product xylem cysteine peptidase 2 note xylem cysteine peptidase 2 (XCP2); FUNCTIONS IN: cysteine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: xylem cysteine peptidase 1 (TAIR:AT4G35350.1); Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59; Bacteria - 219; Metazoa - 3282; Fungi - 4; Plants - 1889; Viruses - 133; Other Eukaryotes - 2115 (source: NCBI BLink). protein_id AT1G20850.1p transcript_id AT1G20850.1 protein_id AT1G20850.1p transcript_id AT1G20850.1
At1g20860	chr1:007254007	0.0	C/7254007-7254925,7257992-7258677	AT1G20860.1 CDS phosphate transporter 1;8 [TAIR10] CDS gene_syn F9H16.16, F9H16_16, PHT1;8, phosphate transporter 1;8 gene PHT1;8 function Encodes Pht1;8, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341). go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function phosphate transmembrane transporter activity|GO:0015114||ISS go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product phosphate transporter 1;8 note phosphate transporter 1;8 (PHT1;8); FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 1;9 (TAIR:AT1G76430.1); Has 29417 Blast hits to 29300 proteins in 2177 species: Archae - 688; Bacteria - 21243; Metazoa - 1648; Fungi - 3510; Plants - 1450; Viruses - 0; Other Eukaryotes - 878 (source: NCBI BLink). protein_id AT1G20860.1p transcript_id AT1G20860.1 protein_id AT1G20860.1p transcript_id AT1G20860.1
AT1G20860	chr1:007254007	0.0	C/7254007-7254925,7257992-7258833	AT1G20860.2 AT1G20860.2 CDS phosphate transporter 1;8
At1g20870	chr1:007259287	0.0	C/7259287-7259531,7259629-7260775	AT1G20870.1 CDS HSP20-like chaperones superfamily protein [TAIR10] CDS gene_syn F9H16.15, F9H16_15 go_component cellular_component|GO:0005575||ND product HSP20-like chaperones superfamily protein note HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G54850.1); Has 109 Blast hits to 81 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G20870.1p transcript_id AT1G20870.1 protein_id AT1G20870.1p transcript_id AT1G20870.1
AT1G20870	chr1:007259287	0.0	C/7259287-7259531,7259629-7260775	AT1G20870.2 AT1G20870.2 CDS HSP20-like chaperones superfamily protein
At1g20875	chr1:007261481	0.0	W/7261481-7261681	AT1G20875.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G20875.1p transcript_id AT1G20875.1 protein_id AT1G20875.1p transcript_id AT1G20875.1
At1g20880	chr1:007262879	0.0	C/7262879-7263181,7263285-7263327,7263871-7263997,7264140-7264284,7264628-7264834	AT1G20880.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F9H16.14, F9H16_14 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1); Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59; Bacteria - 219; Metazoa - 3282; Fungi - 4; Plants - 1889; Viruses - 133; Other Eukaryotes - 2115 (source: NCBI BLink). protein_id AT1G20880.1p transcript_id AT1G20880.1 protein_id AT1G20880.1p transcript_id AT1G20880.1
At1g20880	chr1:007262879	0.0	C/7262879-7263181,7263285-7263327,7263871-7263997,7264140-7264284,7264628-7264834	AT1G20880.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F9H16.14, F9H16_14 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1). protein_id AT1G20880.2p transcript_id AT1G20880.2 protein_id AT1G20880.2p transcript_id AT1G20880.2
AT1G20880	chr1:007262879	0.0	C/7262879-7263181,7263285-7263327,7263871-7263997,7264140-7264284,7264628-7264834	AT1G20880.3 AT1G20880.3 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g20890	chr1:007266088	0.0	C/7266088-7266230,7266342-7266432,7266513-7266644,7266737-7266875,7266972-7267060	AT1G20890.1 CDS caveolin-1 protein, putative [TAIR10] CDS gene_syn F9H16.13, F9H16_13 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.2); Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20890.1p transcript_id AT1G20890.1 protein_id AT1G20890.1p transcript_id AT1G20890.1
AT1G20890	chr1:007266274	0.0	C/7266274-7266432,7266513-7266644,7266737-7266875,7266972-7267060	AT1G20890.2 AT1G20890.2 CDS caveolin-1 protein, putative
At1g20900	chr1:007273024	0.0	W/7273024-7273959	AT1G20900.1 CDS Predicted AT-hook DNA-binding family protein [TAIR10] CDS gene_syn AHL27, AT-hook motif nuclear-localized protein 27, ESC, ESCAROLA, F9H16.12, F9H16_12, ORE7, ORESARA 7 gene ESC function Encodes an AT hook domain containing protein that acts redundantly with SOB3 to modulate hypocotyl growth inhibition in response to light. go_component nucleus|GO:0005634|17971039|IDA go_process chromatin organization|GO:0006325|17971039|IMP go_process photomorphogenesis|GO:0009640|18088311|IMP go_process leaf senescence|GO:0010150|17971039|IMP go_function AT DNA binding|GO:0003680|19517252|IDA go_function double-stranded DNA binding|GO:0003690|17971039|IDA product Predicted AT-hook DNA-binding family protein note ESCAROLA (ESC); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT1G76500.1); Has 2335 Blast hits to 2120 proteins in 205 species: Archae - 0; Bacteria - 577; Metazoa - 531; Fungi - 95; Plants - 869; Viruses - 15; Other Eukaryotes - 248 (source: NCBI BLink). protein_id AT1G20900.1p transcript_id AT1G20900.1 protein_id AT1G20900.1p transcript_id AT1G20900.1
At1g20910	chr1:007277209	0.0	C/7277209-7277304,7277397-7277489,7277732-7277782,7277894-7277960,7278131-7278194,7278272-7278320,7278476-7278598,7279041-7279133,7279392-7279437,7279534-7279586,7279956-7279995,7280081-7280214,7280348-7280635	AT1G20910.1 CDS ARID/BRIGHT DNA-binding domain-containing protein [TAIR10] CDS gene_syn F9H16.11, F9H16_11 go_component intracellular|GO:0005622||IEA go_component intracellular|GO:0005622||ISS go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product ARID/BRIGHT DNA-binding domain-containing protein note ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2); Has 727 Blast hits to 727 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 457; Fungi - 67; Plants - 164; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). protein_id AT1G20910.1p transcript_id AT1G20910.1 protein_id AT1G20910.1p transcript_id AT1G20910.1
AT1G20910	chr1:007277319	0.0	C/7277319-7277489,7277732-7277782,7277894-7277960,7278131-7278194,7278272-7278320,7278476-7278598,7279041-7279133,7279392-7279437,7279534-7279586,7279956-7279995,7280081-7280214,7280348-7280635	AT1G20910.2 AT1G20910.2 CDS ARID/BRIGHT DNA-binding domain-containing protein
At1g20920	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F9H16.10, F9H16_10 go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function ATP-dependent helicase activity|GO:0008026||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1); Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452; Bacteria - 63379; Metazoa - 145404; Fungi - 45975; Plants - 23206; Viruses - 1711; Other Eukaryotes - 88531 (source: NCBI BLink). protein_id AT1G20920.1p transcript_id AT1G20920.1 protein_id AT1G20920.1p transcript_id AT1G20920.1
AT1G20920	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.3 AT1G20920.3 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G20920	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.4 AT1G20920.4 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G20920	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.5 AT1G20920.5 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G20920	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.6 AT1G20920.6 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT1G20920	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.7 AT1G20920.7 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein
At1g20920	chr1:007286356	0.0	W/7286356-7288842	AT1G20920.2 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F9H16.10, F9H16_10 go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function ATP-dependent helicase activity|GO:0008026||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1); Has 45185 Blast hits to 44279 proteins in 3076 species: Archae - 794; Bacteria - 22443; Metazoa - 6674; Fungi - 4936; Plants - 2699; Viruses - 11; Other Eukaryotes - 7628 (source: NCBI BLink). protein_id AT1G20920.2p transcript_id AT1G20920.2 protein_id AT1G20920.2p transcript_id AT1G20920.2
AT1G20923	chr1:007289730	0.0	C/7289730-7289861,7290310-7290390	AT1G20923.1 AT1G20923.1 CDS hypothetical protein
At1g20925	chr1:007289973	0.0	W/7289973-7290163,7290412-7290478,7290612-7290752,7290831-7290910,7290983-7291107,7291182-7291303,7291399-7291533,7291610-7291702,7291793-7291893,7291973-7292025,7292114-7292299,7292383-7292507	AT1G20925.1 CDS Auxin efflux carrier family protein [TAIR10] CDS go_component integral to membrane|GO:0016021||IEA go_process transmembrane transport|GO:0055085||IEA go_process auxin polar transport|GO:0009926||ISS go_function auxin:hydrogen symporter activity|GO:0009672||ISS product Auxin efflux carrier family protein note Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G76520.2); Has 641 Blast hits to 607 proteins in 137 species: Archae - 6; Bacteria - 69; Metazoa - 0; Fungi - 180; Plants - 327; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). protein_id AT1G20925.1p transcript_id AT1G20925.1 protein_id AT1G20925.1p transcript_id AT1G20925.1
At1g20930	chr1:007292752	0.0	C/7292752-7292847,7292942-7293080,7293172-7293241,7293329-7293422,7293555-7293666,7293759-7293820,7293909-7294050,7294432-7294664	AT1G20930.1 CDS cyclin-dependent kinase B2;2 [TAIR10] CDS gene_syn CDKB2;2, CYCLIN-DEPENDENT KINASE B2;2, F9H16.8, F9H16_8, cyclin-dependent kinase B2;2 gene CDKB2;2 function Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle. go_process M phase of mitotic cell cycle|GO:0000087|12000456|IEP go_process regulation of mitotic cell cycle|GO:0007346|11432958|TAS go_process hormone-mediated signaling pathway|GO:0009755|18223038|IEP go_process hormone-mediated signaling pathway|GO:0009755|18223038|IMP go_process regulation of meristem structural organization|GO:0009934|18223038|IMP go_process regulation of G2/M transition of mitotic cell cycle|GO:0010389|18223038|IMP go_function cyclin-dependent protein kinase activity|GO:0004693|11432958|TAS go_function kinase activity|GO:0016301||ISS product cyclin-dependent kinase B2;2 note cyclin-dependent kinase B2;2 (CDKB2;2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B2;1 (TAIR:AT1G76540.1); Has 109034 Blast hits to 107606 proteins in 3051 species: Archae - 93; Bacteria - 11427; Metazoa - 41458; Fungi - 12141; Plants - 24398; Viruses - 437; Other Eukaryotes - 19080 (source: NCBI BLink). protein_id AT1G20930.1p transcript_id AT1G20930.1 protein_id AT1G20930.1p transcript_id AT1G20930.1
At1g20940	chr1:007295274	0.0	C/7295274-7296518	AT1G20940.1 CDS F-box family protein [TAIR10] CDS gene_syn F9H16.7, F9H16_7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: SWI-SNF-related chromatin binding protein (TAIR:AT1G20240.1); Has 79 Blast hits to 74 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G20940.1p transcript_id AT1G20940.1 protein_id AT1G20940.1p transcript_id AT1G20940.1
At1g20950	chr1:007297467	0.0	C/7297467-7297580,7297685-7297850,7297936-7298045,7298144-7298260,7298349-7298453,7298575-7298631,7298724-7298768,7298860-7298970,7299059-7299132,7299226-7299319,7299415-7299495,7299684-7299737,7299880-7299963,7300045-7300112,7300199-7300312,7300407-7300481,7300575-7300687,7300788-7300960,7301247-7301336	AT1G20950.1 CDS Phosphofructokinase family protein [TAIR10] CDS gene_syn F9H16.6, F9H16_6 go_component pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex|GO:0010317||ISS go_process response to sucrose stimulus|GO:0009744|16463203|IEP go_process response to glucose stimulus|GO:0009749|16463203|IEP go_process response to fructose stimulus|GO:0009750|16463203|IEP go_process photosynthesis|GO:0015979|19533038|IMP go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334|19533038|IMP go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334||ISS product Phosphofructokinase family protein note Phosphofructokinase family protein; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, photosynthesis, response to glucose stimulus; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT1G76550.1); Has 4397 Blast hits to 4316 proteins in 1453 species: Archae - 20; Bacteria - 3299; Metazoa - 3; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 642 (source: NCBI BLink). protein_id AT1G20950.1p transcript_id AT1G20950.1 protein_id AT1G20950.1p transcript_id AT1G20950.1
At1g20960	chr1:007302591	0.0	C/7302591-7305776,7305879-7306268,7306975-7309914	AT1G20960.1 CDS U5 small nuclear ribonucleoprotein helicase, putative [TAIR10] CDS gene_syn F9H16.5, F9H16_5, emb1507, embryo defective 1507 gene emb1507 go_component nucleolus|GO:0005730|15496452|IDA go_component membrane|GO:0016020|17432890|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function ATP-dependent helicase activity|GO:0008026||ISS product U5 small nuclear ribonucleoprotein helicase, putative note embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 19827 Blast hits to 11921 proteins in 1742 species: Archae - 1778; Bacteria - 7152; Metazoa - 2915; Fungi - 2450; Plants - 1068; Viruses - 118; Other Eukaryotes - 4346 (source: NCBI BLink). protein_id AT1G20960.1p transcript_id AT1G20960.1 protein_id AT1G20960.1p transcript_id AT1G20960.1
At1g20960	chr1:007302591	0.0	C/7302591-7305776,7305879-7306268,7306975-7309914	AT1G20960.2 CDS U5 small nuclear ribonucleoprotein helicase, putative [TAIR10] CDS gene_syn F9H16.5, F9H16_5, emb1507, embryo defective 1507 gene emb1507 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function ATP-dependent helicase activity|GO:0008026||ISS product U5 small nuclear ribonucleoprotein helicase, putative note embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1). protein_id AT1G20960.2p transcript_id AT1G20960.2 protein_id AT1G20960.2p transcript_id AT1G20960.2
At1g20967	chr1:007313081	0.0	W/7313081-7313227	AT1G20967.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G20967.1p transcript_id AT1G20967.1 protein_id AT1G20967.1p transcript_id AT1G20967.1
At1g20970	chr1:007314338	0.0	W/7314338-7316579,7316676-7316914,7317001-7317159,7317262-7317441,7317660-7317854,7317952-7318050,7318129-7318749,7318887-7319246	AT1G20970.1 CDS calponin-like domain protein [TAIR10] CDS gene_syn F9H16.4, F9H16_4 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G20970.1p transcript_id AT1G20970.1 protein_id AT1G20970.1p transcript_id AT1G20970.1
At1g20980	chr1:007325042	0.0	W/7325042-7325538,7325626-7325831,7325929-7326731,7326823-7326897,7326989-7327096,7327180-7327297,7327391-7327526,7327609-7327753,7327832-7328431,7328514-7328933	AT1G20980.1 CDS squamosa promoter binding protein-like 14 [TAIR10] CDS gene_syn ATSPL14, F9H16.3, F9H16_3, FBR6, SPL14, SPL1R2, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14, squamosa promoter binding protein-like 14 gene SPL14 function Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture. go_component plasma membrane|GO:0005886|17317660|IDA go_process defense response to bacterium|GO:0042742|17028151|IEP go_component nucleus|GO:0005634|15703061|IDA go_component nucleus|GO:0005634||ISS go_process regulation of transcription|GO:0045449|11118137|TAS go_process regulation of transcription|GO:0045449|15703061|IDA go_function DNA binding|GO:0003677|15703061|IDA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|15703061|IDA product squamosa promoter binding protein-like 14 note squamosa promoter binding protein-like 14 (SPL14); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response to bacterium, regulation of transcription; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT1G76580.1); Has 1851 Blast hits to 1143 proteins in 117 species: Archae - 0; Bacteria - 38; Metazoa - 215; Fungi - 101; Plants - 958; Viruses - 0; Other Eukaryotes - 539 (source: NCBI BLink). protein_id AT1G20980.1p transcript_id AT1G20980.1 protein_id AT1G20980.1p transcript_id AT1G20980.1
At1g20990	chr1:007330524	0.0	C/7330524-7331068,7331532-7331946	AT1G20990.1 CDS Cysteine/Histidine-rich C1 domain family protein [TAIR10] CDS gene_syn F9H16.2, F9H16_2 go_component chloroplast|GO:0009507||IEA product Cysteine/Histidine-rich C1 domain family protein note Cysteine/Histidine-rich C1 domain family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G16050.1); Has 1603 Blast hits to 716 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 20; Fungi - 0; Plants - 1573; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G20990.1p transcript_id AT1G20990.1 protein_id AT1G20990.1p transcript_id AT1G20990.1
At1g21000	chr1:007337919	0.0	W/7337919-7337921,7338007-7338210,7338298-7338513,7338771-7339088	AT1G21000.1 CDS PLATZ transcription factor family protein [TAIR10] CDS gene_syn F9H16.1, F9H16_1 go_process biological_process|GO:0008150||ND go_function binding|GO:0005488||ISS product PLATZ transcription factor family protein note PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G76590.1); Has 403 Blast hits to 403 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21000.1p transcript_id AT1G21000.1 protein_id AT1G21000.1p transcript_id AT1G21000.1
At1g21000	chr1:007338013	0.0	W/7338013-7338210,7338298-7338513,7338771-7339088	AT1G21000.2 CDS PLATZ transcription factor family protein [TAIR10] CDS gene_syn F9H16.1, F9H16_1 go_process biological_process|GO:0008150||ND go_function binding|GO:0005488||ISS product PLATZ transcription factor family protein note PLATZ transcription factor family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G76590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G21000.2p transcript_id AT1G21000.2 protein_id AT1G21000.2p transcript_id AT1G21000.2
At1g21010	chr1:007346239	0.0	W/7346239-7346871	AT1G21010.1 CDS poly polymerase, putative [TAIR10] CDS gene_syn F9H16.19, F9H16_19 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21010.1p transcript_id AT1G21010.1 protein_id AT1G21010.1p transcript_id AT1G21010.1
At1g21020	chr1:007353540	0.0	W/7353540-7354397,7354963-7355628,7355710-7356237,7356319-7356432,7356511-7356591,7357007-7357113,7357191-7357275,7357373-7357981	AT1G21020.1 [TAIR10] mRNA
At1g21020	chr1:007353540	0.0	W/7353540-7357981	AT1G21020 [TAIR10] TE pseudo gene_syn T22I11.15, T22I11_15 note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)
At1g21040	chr1:007359983	0.0	C/7359983-7363334	AT1G21040.1 [TAIR10] mRNA
At1g21040	chr1:007359983	0.0	C/7359983-7363334	AT1G21040 [TAIR10] TE pseudo gene_syn T22I11.14 note Transposable element gene, Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)
AT1G21050	chr1:007366751	0.0	W/7366751-7367596	AT1G21050.2 AT1G21050.2 CDS MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
At1g21050	chr1:007366859	0.0	W/7366859-7367596	AT1G21050.1 CDS MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) [TAIR10] CDS gene_syn T22I11.13, T22I11_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF617 note Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT1G76610.1); Has 257 Blast hits to 256 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21050.1p transcript_id AT1G21050.1 protein_id AT1G21050.1p transcript_id AT1G21050.1
At1g21060	chr1:007371763	0.0	W/7371763-7371857,7371947-7372013,7372098-7372160,7372248-7372532,7372610-7372959,7373055-7373154,7373238-7373291,7373371-7373457,7373543-7373671,7373762-7374085	AT1G21060.1 CDS Serine/Threonine-kinase, putative (Protein of unknown function, DUF547) [TAIR10] CDS gene_syn T22I11.12, T22I11_12 go_component chloroplast|GO:0009507|18431481|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF547 note Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G76620.1); Has 536 Blast hits to 524 proteins in 67 species: Archae - 0; Bacteria - 34; Metazoa - 26; Fungi - 3; Plants - 441; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). protein_id AT1G21060.1p transcript_id AT1G21060.1 protein_id AT1G21060.1p transcript_id AT1G21060.1
At1g21060	chr1:007371763	0.0	W/7371763-7371857,7371947-7372013,7372134-7372160,7372248-7372532,7372610-7372959,7373055-7373154,7373238-7373291,7373371-7373457,7373543-7373671,7373762-7374085	AT1G21060.2 CDS Serine/Threonine-kinase, putative (Protein of unknown function, DUF547) [TAIR10] CDS gene_syn T22I11.12, T22I11_12 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function, DUF547 note Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G76620.1). protein_id AT1G21060.2p transcript_id AT1G21060.2 protein_id AT1G21060.2p transcript_id AT1G21060.2
At1g21065	chr1:007374210	0.0	W/7374210-7374503,7374623-7374683,7374794-7374888,7374968-7375001,7375166-7375220,7375320-7375362,7375573-7375644	AT1G21065.1 CDS secondary thiamine-phosphate synthase enzyme [TAIR10] CDS go_component chloroplast|GO:0009507|18431481|IDA go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). protein_id AT1G21065.1p transcript_id AT1G21065.1 protein_id AT1G21065.1p transcript_id AT1G21065.1
At1g21070	chr1:007376148	0.0	C/7376148-7376507,7376589-7376750,7377085-7377285,7377381-7377565,7377672-7377810	AT1G21070.1 CDS Nucleotide-sugar transporter family protein [TAIR10] CDS gene_syn T22I11.10, T22I11_10 go_component membrane|GO:0016020||ISS product Nucleotide-sugar transporter family protein note Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G76670.1); Has 2012 Blast hits to 2008 proteins in 220 species: Archae - 0; Bacteria - 26; Metazoa - 397; Fungi - 317; Plants - 1060; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink). protein_id AT1G21070.1p transcript_id AT1G21070.1 protein_id AT1G21070.1p transcript_id AT1G21070.1
At1g21080	chr1:007378822	0.0	C/7378822-7378926,7379024-7379050,7379332-7379469,7379582-7379662,7379753-7379931,7380133-7380291,7380410-7380536,7380802-7380958,7381099-7381181,7381805-7381864,7382189-7382275	AT1G21080.3 CDS DNAJ heat shock N-terminal domain-containing protein [TAIR10] CDS gene_syn T22I11.9, T22I11_9 go_process protein folding|GO:0006457||IEA go_function heat shock protein binding|GO:0031072||IEA go_function unfolded protein binding|GO:0051082||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product DNAJ heat shock N-terminal domain-containing protein note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1). protein_id AT1G21080.3p transcript_id AT1G21080.3 protein_id AT1G21080.3p transcript_id AT1G21080.3
At1g21080	chr1:007378822	0.0	C/7378822-7378926,7379332-7379469,7379582-7379662,7379753-7379931,7380133-7380291,7380410-7380536,7380802-7380927	AT1G21080.2 CDS DNAJ heat shock N-terminal domain-containing protein [TAIR10] CDS gene_syn T22I11.9, T22I11_9 go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product DNAJ heat shock N-terminal domain-containing protein note DNAJ heat shock N-terminal domain-containing protein; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1); Has 441 Blast hits to 432 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 196; Plants - 148; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). protein_id AT1G21080.2p transcript_id AT1G21080.2 protein_id AT1G21080.2p transcript_id AT1G21080.2
At1g21080	chr1:007378822	0.0	C/7378822-7378926,7379332-7379469,7379582-7379662,7379753-7379931,7380133-7380291,7380410-7380536,7380802-7380958,7381099-7381181,7381805-7381864,7382189-7382275	AT1G21080.1 CDS DNAJ heat shock N-terminal domain-containing protein [TAIR10] CDS gene_syn T22I11.9, T22I11_9 go_process protein folding|GO:0006457||IEA go_function heat shock protein binding|GO:0031072||IEA go_function unfolded protein binding|GO:0051082||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product DNAJ heat shock N-terminal domain-containing protein note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1); Has 22938 Blast hits to 22804 proteins in 3197 species: Archae - 169; Bacteria - 9211; Metazoa - 3964; Fungi - 2251; Plants - 2330; Viruses - 17; Other Eukaryotes - 4996 (source: NCBI BLink). protein_id AT1G21080.1p transcript_id AT1G21080.1 protein_id AT1G21080.1p transcript_id AT1G21080.1
At1g21090	chr1:007384854	0.0	W/7384854-7385007,7385099-7385214,7385638-7386024,7386128-7386199	AT1G21090.1 CDS Cupredoxin superfamily protein [TAIR10] CDS gene_syn T22I11.8, T22I11_8 go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS product Cupredoxin superfamily protein note Cupredoxin superfamily protein; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972); Has 232 Blast hits to 228 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 9; Plants - 195; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G21090.1p transcript_id AT1G21090.1 protein_id AT1G21090.1p transcript_id AT1G21090.1
AT1G21090	chr1:007384854	0.0	W/7384854-7385007,7385099-7385214,7385638-7386045	AT1G21090.2 AT1G21090.2 CDS Cupredoxin superfamily protein
At1g21100	chr1:007386991	0.0	C/7386991-7387290,7387407-7387779,7387870-7388318	AT1G21100.1 CDS O-methyltransferase family protein [TAIR10] CDS gene_syn T22I11.7, T22I11_7 go_function methyltransferase activity|GO:0008168||IEA go_function O-methyltransferase activity|GO:0008171||IEA go_function protein dimerization activity|GO:0046983||IEA go_component cytosol|GO:0005829|9484457|TAS product O-methyltransferase family protein note O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: stem, cotyledon, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21130.1); Has 3375 Blast hits to 3370 proteins in 588 species: Archae - 3; Bacteria - 947; Metazoa - 107; Fungi - 659; Plants - 1542; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). protein_id AT1G21100.1p transcript_id AT1G21100.1 protein_id AT1G21100.1p transcript_id AT1G21100.1
At1g21110	chr1:007390110	0.0	C/7390110-7390409,7390503-7390875,7390971-7391419	AT1G21110.1 CDS O-methyltransferase family protein [TAIR10] CDS gene_syn T22I11.6, T22I11_6 go_function methyltransferase activity|GO:0008168||IEA go_function O-methyltransferase activity|GO:0008171||IEA go_function protein dimerization activity|GO:0046983||IEA go_component cytosol|GO:0005829|9484457|TAS product O-methyltransferase family protein note O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21120.1); Has 3289 Blast hits to 3284 proteins in 565 species: Archae - 1; Bacteria - 890; Metazoa - 104; Fungi - 640; Plants - 1549; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). protein_id AT1G21110.1p transcript_id AT1G21110.1 protein_id AT1G21110.1p transcript_id AT1G21110.1
At1g21120	chr1:007395331	0.0	C/7395331-7395630,7395724-7396096,7396192-7396640	AT1G21120.1 CDS O-methyltransferase family protein [TAIR10] CDS gene_syn T22I11.5, T22I11_5 go_function methyltransferase activity|GO:0008168||IEA go_function O-methyltransferase activity|GO:0008171||IEA go_function protein dimerization activity|GO:0046983||IEA go_component cytosol|GO:0005829|9484457|TAS product O-methyltransferase family protein note O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21110.1); Has 3310 Blast hits to 3305 proteins in 577 species: Archae - 1; Bacteria - 921; Metazoa - 104; Fungi - 640; Plants - 1542; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). protein_id AT1G21120.1p transcript_id AT1G21120.1 protein_id AT1G21120.1p transcript_id AT1G21120.1
AT1G21120	chr1:007395331	0.0	C/7395331-7395630,7395724-7396096,7396192-7396784	AT1G21120.2 AT1G21120.2 CDS O-methyltransferase family protein
At1g21130	chr1:007399170	0.0	C/7399170-7399469,7399558-7399930,7400022-7400470	AT1G21130.1 CDS O-methyltransferase family protein [TAIR10] CDS gene_syn T22I11.4, T22I11_4 go_function methyltransferase activity|GO:0008168||IEA go_function O-methyltransferase activity|GO:0008171||IEA go_function protein dimerization activity|GO:0046983||IEA go_component cytosol|GO:0005829|9484457|TAS product O-methyltransferase family protein note O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21100.1); Has 3382 Blast hits to 3377 proteins in 592 species: Archae - 1; Bacteria - 963; Metazoa - 105; Fungi - 662; Plants - 1542; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). protein_id AT1G21130.1p transcript_id AT1G21130.1 protein_id AT1G21130.1p transcript_id AT1G21130.1
At1g21130	chr1:007399489	0.0	C/7399489-7399930,7400022-7400470	AT1G21130.2 CDS O-methyltransferase family protein [TAIR10] CDS gene_syn T22I11.4, T22I11_4 go_function methyltransferase activity|GO:0008168||IEA go_function O-methyltransferase activity|GO:0008171||IEA go_function protein dimerization activity|GO:0046983||IEA go_component cytosol|GO:0005829|9484457|TAS product O-methyltransferase family protein note O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21120.1); Has 1760 Blast hits to 1758 proteins in 271 species: Archae - 0; Bacteria - 265; Metazoa - 8; Fungi - 22; Plants - 1437; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). protein_id AT1G21130.2p transcript_id AT1G21130.2 protein_id AT1G21130.2p transcript_id AT1G21130.2
At1g21140	chr1:007404464	0.0	W/7404464-7405066	AT1G21140.1 CDS Vacuolar iron transporter (VIT) family protein [TAIR10] CDS gene_syn T22I11.3, T22I11_3 go_process biological_process|GO:0008150||ND product Vacuolar iron transporter (VIT) family protein note Vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT3G43660.1); Has 1867 Blast hits to 1856 proteins in 645 species: Archae - 60; Bacteria - 1279; Metazoa - 0; Fungi - 103; Plants - 211; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink). protein_id AT1G21140.1p transcript_id AT1G21140.1 protein_id AT1G21140.1p transcript_id AT1G21140.1
AT1G21150	chr1:007406406	0.0	C/7406406-7407403,7407704-7407770	AT1G21150.3 AT1G21150.3 CDS Mitochondrial transcription termination factor family protein
At1g21150	chr1:007406406	0.0	C/7406406-7407578	AT1G21150.1 CDS Mitochondrial transcription termination factor family protein [TAIR10] CDS gene_syn T22I11.17, T22I11_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Mitochondrial transcription termination factor family protein note Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 922 Blast hits to 791 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 903; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G21150.1p transcript_id AT1G21150.1 protein_id AT1G21150.1p transcript_id AT1G21150.1
AT1G21150	chr1:007406406	0.0	C/7406406-7407770	AT1G21150.2 AT1G21150.2 CDS Mitochondrial transcription termination factor family protein
At1g21160	chr1:007408121	0.0	C/7408121-7408186,7408292-7408408,7408489-7408626,7408711-7409268,7409380-7409439,7409564-7409629,7409738-7409848,7409929-7410019,7410116-7410216,7410311-7410418,7410501-7411048,7411141-7412455	AT1G21160.1 CDS eukaryotic translation initiation factor 2 (eIF-2) family protein [TAIR10] CDS gene_syn T22I11.2, T22I11_2 go_function GTPase activity|GO:0003924||IEA go_function GTP binding|GO:0005525||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function translation initiation factor activity|GO:0003743||ISS product eukaryotic translation initiation factor 2 (eIF-2) family protein note eukaryotic translation initiation factor 2 (eIF-2) family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 (eIF-2) family protein (TAIR:AT1G76810.1); Has 90488 Blast hits to 74140 proteins in 3758 species: Archae - 1026; Bacteria - 37280; Metazoa - 18910; Fungi - 5896; Plants - 2823; Viruses - 221; Other Eukaryotes - 24332 (source: NCBI BLink). protein_id AT1G21160.1p transcript_id AT1G21160.1 protein_id AT1G21160.1p transcript_id AT1G21160.1
At1g21170	chr1:007413050	0.0	W/7413050-7413469,7413798-7413955,7414070-7414155,7414271-7414465,7414549-7414676,7414762-7414920,7415054-7415158,7415419-7415493,7415735-7415872,7415969-7416154,7416243-7416371,7416507-7416633,7416714-7416924,7417310-7417425,7417543-7417771,7418030-7418123,7418266-7418343,7418456-7418512,7418624-7418773,7418870-7419085,7419196-7419411	AT1G21170.1 CDS Exocyst complex component SEC5 [TAIR10] CDS gene_syn SEC5B gene SEC5B go_component cytosol|GO:0005829|18433157|IDA go_process pollen germination|GO:0009846|18492870|IGI go_process pollen tube growth|GO:0009860|18492870|IGI go_function molecular_function|GO:0003674||ND product Exocyst complex component SEC5 note SEC5B; BEST Arabidopsis thaliana protein match is: exocyst complex component sec5 (TAIR:AT1G76850.1); Has 822 Blast hits to 808 proteins in 207 species: Archae - 0; Bacteria - 24; Metazoa - 388; Fungi - 169; Plants - 124; Viruses - 8; Other Eukaryotes - 109 (source: NCBI BLink). protein_id AT1G21170.1p transcript_id AT1G21170.1 protein_id AT1G21170.1p transcript_id AT1G21170.1
AT1G21170	chr1:007413050	0.0	W/7413050-7413469,7413798-7413955,7414070-7414155,7414271-7414465,7414549-7414676,7414762-7414920,7415054-7415158,7415419-7415493,7415735-7415924,7415994-7416154,7416243-7416371,7416507-7416633,7416714-7416924,7417310-7417425,7417543-7417771,7418030-7418123,7418266-7418343,7418456-7418512,7418624-7418773,7418870-7419085,7419196-7419411	AT1G21170.2 AT1G21170.2 CDS Exocyst complex component SEC5
At1g21190	chr1:007419989	0.0	C/7419989-7420069,7420392-7420487,7420740-7420856	AT1G21190.1 CDS Small nuclear ribonucleoprotein family protein [TAIR10] CDS gene_syn F16F4.12, F16F4_12 go_component nucleus|GO:0005634||ISS go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Small nuclear ribonucleoprotein family protein note Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G76860.1); Has 1267 Blast hits to 1267 proteins in 306 species: Archae - 319; Bacteria - 0; Metazoa - 370; Fungi - 215; Plants - 174; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink). protein_id AT1G21190.1p transcript_id AT1G21190.1 protein_id AT1G21190.1p transcript_id AT1G21190.1
At1g21200	chr1:007421483	0.0	W/7421483-7422814	AT1G21200.1 CDS sequence-specific DNA binding transcription factors [TAIR10] CDS gene_syn F16F4.11, F16F4_11 go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product sequence-specific DNA binding transcription factors note sequence-specific DNA binding transcription factors; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 317 Blast hits to 297 proteins in 56 species: Archae - 2; Bacteria - 28; Metazoa - 67; Fungi - 2; Plants - 135; Viruses - 9; Other Eukaryotes - 74 (source: NCBI BLink). protein_id AT1G21200.1p transcript_id AT1G21200.1 protein_id AT1G21200.1p transcript_id AT1G21200.1
AT1G21200	chr1:007421483	0.0	W/7421483-7422814	AT1G21200.2 AT1G21200.2 CDS sequence-specific DNA binding transcription factors
AT1G21200	chr1:007421483	0.0	W/7421483-7422814	AT1G21200.3 AT1G21200.3 CDS sequence-specific DNA binding transcription factors
At1g21202	chr1:007423518	0.0	W/7423518-7423611	AT1G21202.1 [TAIR10] miRNA gene_syn MIR781A, microRNA781A gene MIR781A function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUAGAGUUUUCUGGAUACUUA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MIR781A (microRNA781A); miRNA transcript_id AT1G21202.1
At1g21210	chr1:007424653	0.0	W/7424653-7425487,7425585-7425770,7425846-7427041	AT1G21210.1 CDS wall associated kinase 4 [TAIR10] CDS gene_syn F16F4.10, F16F4_10, WAK4, wall associated kinase 4 gene WAK4 function cell wall-associated ser/thr kinase involved in cell elongation and lateral root development go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function calcium ion binding|GO:0005509||IEA go_function ATP binding|GO:0005524||IEA go_component plasma membrane|GO:0005886|10380805|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process unidimensional cell growth|GO:0009826|11402163|IMP go_process lateral root development|GO:0048527|11402163|IMP go_function protein serine/threonine kinase activity|GO:0004674||ISS product wall associated kinase 4 note wall associated kinase 4 (WAK4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation, unidimensional cell growth, lateral root development; LOCATED IN: plasma membrane; EXPRESSED IN: root, trichome; CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: wall-associated kinase 2 (TAIR:AT1G21270.1); Has 129683 Blast hits to 121711 proteins in 4745 species: Archae - 127; Bacteria - 14044; Metazoa - 54379; Fungi - 9626; Plants - 33474; Viruses - 427; Other Eukaryotes - 17606 (source: NCBI BLink). protein_id AT1G21210.1p transcript_id AT1G21210.1 protein_id AT1G21210.1p transcript_id AT1G21210.1
At1g21220	chr1:007428247	0.0	C/7428247-7428930	AT1G21220.1 CDS Copia-like polyprotein/retrotransposon [TAIR10] mRNA
AT1G21220	chr1:007428247	0.0	C/7428247-7428930	AT1G21220.2 AT1G21220.2 CDS Copia-like polyprotein/retrotransposon
At1g21230	chr1:007429980	0.0	W/7429980-7430814,7430895-7431074,7431160-7432346	AT1G21230.1 CDS wall associated kinase 5 [TAIR10] CDS gene_syn F16F4.9, F16F4_9, WAK5, wall associated kinase 5 gene WAK5 function encodes a wall-associated kinase go_process protein amino acid phosphorylation|GO:0006468||IEA go_component plasma membrane|GO:0005886|10380805|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function kinase activity|GO:0016301||ISS product wall associated kinase 5 note wall associated kinase 5 (WAK5); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: cell wall-associated kinase (TAIR:AT1G21250.1); Has 137298 Blast hits to 123121 proteins in 4733 species: Archae - 125; Bacteria - 14072; Metazoa - 61552; Fungi - 9626; Plants - 33595; Viruses - 427; Other Eukaryotes - 17901 (source: NCBI BLink). protein_id AT1G21230.1p transcript_id AT1G21230.1 protein_id AT1G21230.1p transcript_id AT1G21230.1
AT1G21240	chr1:007434303	0.0	W/7434303-7434788,7435746-7436702	AT1G21240.2 AT1G21240.2 CDS wall associated kinase 3
At1g21240	chr1:007434303	0.0	W/7434303-7435179,7435281-7435439,7435513-7436702	AT1G21240.1 CDS wall associated kinase 3 [TAIR10] CDS gene_syn F16F4.8, F16F4_8, WAK3, wall associated kinase 3 gene WAK3 function encodes a wall-associated kinase go_process protein amino acid phosphorylation|GO:0006468||IEA go_component plasma membrane|GO:0005886|10380805|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function kinase activity|GO:0016301||ISS product wall associated kinase 3 note wall associated kinase 3 (WAK3); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF calcium-binding (InterPro:IPR013091), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: cell wall-associated kinase (TAIR:AT1G21250.1); Has 137245 Blast hits to 122966 proteins in 4824 species: Archae - 125; Bacteria - 13959; Metazoa - 61902; Fungi - 9553; Plants - 33418; Viruses - 443; Other Eukaryotes - 17845 (source: NCBI BLink). protein_id AT1G21240.1p transcript_id AT1G21240.1 protein_id AT1G21240.1p transcript_id AT1G21240.1
At1g21245	chr1:007436842	0.0	W/7436842-7437342	AT1G21245.1 CDS Protein kinase superfamily protein [TAIR10] CDS go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: wall associated kinase 3 (TAIR:AT1G21240.1); Has 18774 Blast hits to 18543 proteins in 473 species: Archae - 0; Bacteria - 447; Metazoa - 261; Fungi - 0; Plants - 17989; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). protein_id AT1G21245.1p transcript_id AT1G21245.1 protein_id AT1G21245.1p transcript_id AT1G21245.1
At1g21250	chr1:007439512	0.0	W/7439512-7440355,7440441-7440614,7440703-7441892	AT1G21250.1 CDS cell wall-associated kinase [TAIR10] CDS gene_syn F16F4.6, F16F4_6, PRO25, SERINE THREONINE KINASE, WAK1, cell wall-associated kinase gene WAK1 function cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|10380805|IDA go_component plasma membrane|GO:0005886|11554472|ISS go_component plant-type cell wall|GO:0009505|8702686|IDA go_process cell surface receptor linked signaling pathway|GO:0007166|11335717|IPI go_process response to virus|GO:0009615|20042021|IEP go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP go_process defense response to fungus|GO:0050832|20439716|IMP go_function kinase activity|GO:0016301|8702686|ISS go_function kinase activity|GO:0016301||ISS product cell wall-associated kinase note cell wall-associated kinase (WAK1); FUNCTIONS IN: kinase activity; INVOLVED IN: cell surface receptor linked signaling pathway, response to virus, defense response to fungus, response to salicylic acid stimulus; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: wall associated kinase 3 (TAIR:AT1G21240.1); Has 130372 Blast hits to 120319 proteins in 4569 species: Archae - 123; Bacteria - 13482; Metazoa - 56283; Fungi - 9380; Plants - 33196; Viruses - 438; Other Eukaryotes - 17470 (source: NCBI BLink). protein_id AT1G21250.1p transcript_id AT1G21250.1 protein_id AT1G21250.1p transcript_id AT1G21250.1
At1g21260	chr1:007442245	0.0	C/7442245-7442952	AT1G21260.1 CDS Copia-like polyprotein/retrotransposon [TAIR10] mRNA
At1g21270	chr1:007444997	0.0	W/7444997-7445828,7445903-7446073,7446150-7447345	AT1G21270.1 CDS wall-associated kinase 2 [TAIR10] CDS gene_syn F16F4.5, F16F4_5, WAK2, wall-associated kinase 2 gene WAK2 function cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function calcium ion binding|GO:0005509||IEA go_function ATP binding|GO:0005524||IEA go_component plasma membrane|GO:0005886|10380805|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process oligosaccharide metabolic process|GO:0009311|16623892|IMP go_process response to salicylic acid stimulus|GO:0009751|10380805|IDA go_process unidimensional cell growth|GO:0009826|16623892|IMP go_process cellular water homeostasis|GO:0009992|16623892|IDA go_process cellular water homeostasis|GO:0009992|16623892|IMP go_function protein serine/threonine kinase activity|GO:0004674||ISS product wall-associated kinase 2 note wall-associated kinase 2 (WAK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: cellular water homeostasis, protein amino acid phosphorylation, oligosaccharide metabolic process, unidimensional cell growth, response to salicylic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: wall associated kinase 5 (TAIR:AT1G21230.1); Has 140654 Blast hits to 123720 proteins in 4781 species: Archae - 129; Bacteria - 13911; Metazoa - 65181; Fungi - 9585; Plants - 33448; Viruses - 437; Other Eukaryotes - 17963 (source: NCBI BLink). protein_id AT1G21270.1p transcript_id AT1G21270.1 protein_id AT1G21270.1p transcript_id AT1G21270.1
At1g21280	chr1:007447690	0.0	C/7447690-7448403	AT1G21280.1 CDS Copia-like polyprotein/retrotransposon [TAIR10] CDS gene_syn F16F4.14, F16F4_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21280.1p transcript_id AT1G21280.1 protein_id AT1G21280.1p transcript_id AT1G21280.1
At1g21281	chr1:007448552	0.0	W/7448552-7448683	AT1G21281.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G21281.1p transcript_id AT1G21281.1 protein_id AT1G21281.1p transcript_id AT1G21281.1
At1g21286	chr1:007449472	0.0	W/7449472-7449664	AT1G21286.1 [TAIR10] pseudogene
At1g21290	chr1:007449964	0.0	C/7449964-7450695	AT1G21290.1 CDS Copia-like polyprotein/retrotransposon [TAIR10] mRNA
At1g21300	chr1:007451150	0.0	C/7451150-7451707	AT1G21300.1 [TAIR10] mRNA
At1g21300	chr1:007451150	0.0	C/7451150-7451707	AT1G21300 [TAIR10] TE pseudo gene_syn F16F4.16, F16F4_16 note Transposable element gene, copia-like retrotransposon family, has a 3.9e-15 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
At1g21310	chr1:007453693	0.0	C/7453693-7454988	AT1G21310.1 CDS extensin 3 [TAIR10] CDS gene_syn ATEXT3, EXT3, F16F4.4, F16F4_4, ROOT-SHOOT-HYPOCOTYL DEFECTIVE, RSH, extensin 3 gene EXT3 function Encodes extensin 3. go_component endomembrane system|GO:0012505||IEA go_process plant-type cell wall organization|GO:0009664||IEA go_function structural constituent of cell wall|GO:0005199|12034904|IDA product extensin 3 note extensin 3 (EXT3); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: extensin 4 (TAIR:AT1G76930.1); Has 148545 Blast hits to 27416 proteins in 1232 species: Archae - 272; Bacteria - 19294; Metazoa - 56539; Fungi - 24663; Plants - 25187; Viruses - 4465; Other Eukaryotes - 18125 (source: NCBI BLink). protein_id AT1G21310.1p transcript_id AT1G21310.1 protein_id AT1G21310.1p transcript_id AT1G21310.1
AT1G21313	chr1:007453735	0.0	W/7453735-7453775,7453815-7454256	AT1G21313.1 AT1G21313.1 CDS transmembrane protein, putative
AT1G21320	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7463938	AT1G21320.5 AT1G21320.5 CDS nucleic acid/nucleotide binding protein
At1g21320	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7463970,7464600-7465200	AT1G21320.1 CDS nucleic acid/nucleotide binding protein [TAIR10] CDS gene_syn F16F4.3, F16F4_3 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product nucleotide binding;nucleic acid binding note nucleotide binding;nucleic acid binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G21320.1p transcript_id AT1G21320.1 protein_id AT1G21320.1p transcript_id AT1G21320.1
At1g21320	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7463970,7466068-7466164	AT1G21320.2 CDS nucleic acid/nucleotide binding protein [TAIR10] CDS gene_syn F16F4.3, F16F4_3 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product nucleotide binding;nucleic acid binding note nucleotide binding;nucleic acid binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76940.1); Has 568 Blast hits to 568 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 126; Plants - 140; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). protein_id AT1G21320.2p transcript_id AT1G21320.2 protein_id AT1G21320.2p transcript_id AT1G21320.2
AT1G21320	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7464076	AT1G21320.3 AT1G21320.3 CDS nucleic acid/nucleotide binding protein
AT1G21320	chr1:007463411	0.0	C/7463411-7463752,7463837-7463970,7464600-7465200	AT1G21320.4 AT1G21320.4 CDS nucleic acid/nucleotide binding protein
At1g21323	chr1:007466694	0.0	W/7466694-7466834,7466918-7467053,7467250-7467359	AT1G21323.1 CDS dual specificity kinase, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21323.1p transcript_id AT1G21323.1 protein_id AT1G21323.1p transcript_id AT1G21323.1
At1g21326	chr1:007469002	0.0	C/7469002-7469721	AT1G21326.1 CDS VQ motif-containing protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product VQ motif-containing protein note VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding (TAIR:AT1G21320.1); Has 294 Blast hits to 294 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 21; Plants - 144; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G21326.1p transcript_id AT1G21326.1 protein_id AT1G21326.1p transcript_id AT1G21326.1
At1g21327	chr1:007471947	0.0	C/7471947-7472210	AT1G21327.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G21327.1p transcript_id AT1G21327.1 protein_id AT1G21327.1p transcript_id AT1G21327.1
At1g21330	chr1:007475121	0.0	W/7475121-7475579	AT1G21330.1 CDS non-LTR retroelement reverse transcriptase, putative [TAIR10] mRNA
At1g21340	chr1:007476087	0.0	W/7476087-7476869	AT1G21340.1 CDS Dof-type zinc finger DNA-binding family protein [TAIR10] CDS gene_syn F24J8.23, F24J8_23 go_component cellular_component|GO:0005575||ND go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12475498|ISS product Dof-type zinc finger DNA-binding family protein note Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT3G52440.1); Has 1085 Blast hits to 1080 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1080; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G21340.1p transcript_id AT1G21340.1 protein_id AT1G21340.1p transcript_id AT1G21340.1
At1g21350	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478519	AT1G21350.1 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn F24J8.1, F24J8_1 go_component chloroplast|GO:0009507|18431481|IDA go_function antioxidant activity|GO:0016209||IEA go_function oxidoreductase activity|GO:0016491||IEA product Thioredoxin superfamily protein note Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); Has 2579 Blast hits to 2579 proteins in 331 species: Archae - 32; Bacteria - 684; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1810 (source: NCBI BLink). protein_id AT1G21350.1p transcript_id AT1G21350.1 protein_id AT1G21350.1p transcript_id AT1G21350.1
AT1G21350	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478519	AT1G21350.4 AT1G21350.4 CDS Thioredoxin superfamily protein
At1g21350	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478522,7478617-7478682,7478779-7479012	AT1G21350.3 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn F24J8.1, F24J8_1 go_component chloroplast|GO:0009507|18431481|IDA go_process cell redox homeostasis|GO:0045454||IEA go_function antioxidant activity|GO:0016209||IEA go_function oxidoreductase activity|GO:0016491||IEA product Thioredoxin superfamily protein note Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G21350.3p transcript_id AT1G21350.3 protein_id AT1G21350.3p transcript_id AT1G21350.3
AT1G21350	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478522,7478617-7478682,7478779-7479051	AT1G21350.5 AT1G21350.5 CDS Thioredoxin superfamily protein
At1g21350	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478617-7478682,7478779-7479012	AT1G21350.2 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn F24J8.1, F24J8_1 go_component chloroplast|GO:0009507|18431481|IDA go_function antioxidant activity|GO:0016209||IEA go_function oxidoreductase activity|GO:0016491||IEA product Thioredoxin superfamily protein note Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); Has 2428 Blast hits to 2428 proteins in 329 species: Archae - 32; Bacteria - 670; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1673 (source: NCBI BLink). protein_id AT1G21350.2p transcript_id AT1G21350.2 protein_id AT1G21350.2p transcript_id AT1G21350.2
At1g21360	chr1:007481365	0.0	W/7481365-7481533,7481680-7481735,7482135-7482265,7482599-7482734,7482912-7483055,7483202-7483237	AT1G21360.1 CDS glycolipid transfer protein 2 [TAIR10] CDS gene_syn F24J8.2, F24J8_2, GLTP2, glycolipid transfer protein 2 gene GLTP2 go_component cytoplasm|GO:0005737||IEA go_process glycolipid transport|GO:0046836||IEA go_function glycolipid transporter activity|GO:0017089||IEA go_function glycolipid binding|GO:0051861||IEA product glycolipid transfer protein 2 note glycolipid transfer protein 2 (GLTP2); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT3G21260.3); Has 509 Blast hits to 509 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 240; Fungi - 112; Plants - 114; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). protein_id AT1G21360.1p transcript_id AT1G21360.1 protein_id AT1G21360.1p transcript_id AT1G21360.1
AT1G21360	chr1:007481365	0.0	W/7481365-7481533,7481680-7481735,7482135-7482265,7482599-7482833	AT1G21360.3 AT1G21360.3 CDS glycolipid transfer protein 2
AT1G21360	chr1:007481697	0.0	W/7481697-7481735,7482135-7482265,7482599-7482734,7482912-7483055,7483202-7483237	AT1G21360.2 AT1G21360.2 CDS glycolipid transfer protein 2
At1g21370	chr1:007484250	0.0	W/7484250-7484838,7484920-7485041,7485134-7485451	AT1G21370.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F24J8.26, F24J8_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 160 Blast hits to 160 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 102; Plants - 44; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G21370.1p transcript_id AT1G21370.1 protein_id AT1G21370.1p transcript_id AT1G21370.1
At1g21370	chr1:007484250	0.0	W/7484250-7484838,7484920-7485041,7485134-7485451	AT1G21370.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F24J8.26, F24J8_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G21370.2p transcript_id AT1G21370.2 protein_id AT1G21370.2p transcript_id AT1G21370.2
At1g21380	chr1:007485806	0.0	C/7485806-7486415,7486496-7486684,7486781-7486866,7486949-7487030,7487126-7487277,7487360-7487473,7487563-7487661,7487744-7487822,7487923-7488032	AT1G21380.1 CDS Target of Myb protein 1 [TAIR10] CDS gene_syn F24J8.3, F24J8_3 go_component intracellular|GO:0005622||IEA go_process intracellular protein transport|GO:0006886||IEA go_component Golgi stack|GO:0005795||ISS go_process intracellular protein transport|GO:0006886||ISS go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS go_function protein transporter activity|GO:0008565||ISS product Target of Myb protein 1 note Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT1G76970.1); Has 1707 Blast hits to 1699 proteins in 198 species: Archae - 0; Bacteria - 6; Metazoa - 892; Fungi - 452; Plants - 279; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). protein_id AT1G21380.1p transcript_id AT1G21380.1 protein_id AT1G21380.1p transcript_id AT1G21380.1
At1g21390	chr1:007489385	0.0	C/7489385-7489481,7489905-7490554	AT1G21390.1 CDS embryo defective 2170 [TAIR10] CDS gene_syn F24J8.30, F24J8_30, emb2170, embryo defective 2170 gene emb2170 go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function molecular_function|GO:0003674||ND product embryo defective 2170 note embryo defective 2170 (emb2170); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76980.2); Has 51 Blast hits to 51 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G21390.1p transcript_id AT1G21390.1 protein_id AT1G21390.1p transcript_id AT1G21390.1
At1g21395	chr1:007492011	0.0	W/7492011-7492232	AT1G21395.1 CDS transmembrane protein, putative [TAIR10] CDS go_component membrane|GO:0016020|11152613|ISS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26865.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G21395.1p transcript_id AT1G21395.1 protein_id AT1G21395.1p transcript_id AT1G21395.1
AT1G21400	chr1:007493336	0.0	W/7493336-7493725,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.5 AT1G21400.5 CDS Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
AT1G21400	chr1:007493336	0.0	W/7493336-7493725,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495494	AT1G21400.6 AT1G21400.6 CDS Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
At1g21400	chr1:007493492	0.0	W/7493492-7493725,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.1 CDS Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [TAIR10] CDS gene_syn F24J8.4, F24J8_4 go_process metabolic process|GO:0008152||IEA go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA go_process metabolic process|GO:0008152||ISS go_function 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|GO:0003863||ISS product Thiamin diphosphate-binding fold (THDP-binding) superfamily protein note Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT5G09300.1); Has 9510 Blast hits to 9506 proteins in 1925 species: Archae - 124; Bacteria - 6142; Metazoa - 513; Fungi - 243; Plants - 187; Viruses - 0; Other Eukaryotes - 2301 (source: NCBI BLink). protein_id AT1G21400.1p transcript_id AT1G21400.1 protein_id AT1G21400.1p transcript_id AT1G21400.1
AT1G21400	chr1:007494169	0.0	W/7494169-7494177,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.3 AT1G21400.3 CDS Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
AT1G21400	chr1:007494486	0.0	W/7494486-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.2 AT1G21400.2 CDS Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
AT1G21400	chr1:007494486	0.0	W/7494486-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.4 AT1G21400.4 CDS Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
At1g21410	chr1:007497479	0.0	W/7497479-7497696,7498245-7498593,7498698-7498839,7499013-7499386	AT1G21410.1 CDS F-box/RNI-like superfamily protein [TAIR10] CDS gene_syn F24J8.5, F24J8_5, SKP2A gene SKP2A function AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. go_component nucleus|GO:0005634|18036202|IDA go_component SCF ubiquitin ligase complex|GO:0019005|12468727|IPI go_process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|GO:0031146|12468727|IPI go_process positive regulation of cell division|GO:0051781|18036202|IMP product F-box/RNI-like superfamily protein note SKP2A; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G77000.2); Has 8874 Blast hits to 3879 proteins in 263 species: Archae - 0; Bacteria - 386; Metazoa - 3510; Fungi - 1080; Plants - 2969; Viruses - 9; Other Eukaryotes - 920 (source: NCBI BLink). protein_id AT1G21410.1p transcript_id AT1G21410.1 protein_id AT1G21410.1p transcript_id AT1G21410.1
AT1G21410	chr1:007497479	0.0	W/7497479-7497696,7498245-7498593,7498698-7498839,7499013-7499386	AT1G21410.2 AT1G21410.2 CDS F-box/RNI-like superfamily protein
At1g21420	chr1:007499733	0.0	C/7499733-7499804	AT1G21420.1 [TAIR10] tRNA gene_syn 52094.TRNA-GLN-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Gln (anticodon: TTG) transcript_id AT1G21420.1
At1g21430	chr1:007500845	0.0	W/7500845-7501462,7501549-7501905,7501986-7502186	AT1G21430.1 CDS Flavin-binding monooxygenase family protein [TAIR10] CDS gene_syn F24J8.6, F24J8_6, YUC11 gene YUC11 go_component membrane|GO:0016020|17432890|IDA go_function flavin-containing monooxygenase activity|GO:0004499||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function NADP or NADPH binding|GO:0050661||IEA go_process regulation of anatomical structure morphogenesis|GO:0022603|17704214|IGI go_function monooxygenase activity|GO:0004497||ISS product Flavin-binding monooxygenase family protein note YUC11; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: regulation of anatomical structure morphogenesis; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-containing monooxygenase family protein (TAIR:AT1G48910.1); Has 9762 Blast hits to 9749 proteins in 1331 species: Archae - 35; Bacteria - 5524; Metazoa - 772; Fungi - 1287; Plants - 602; Viruses - 0; Other Eukaryotes - 1542 (source: NCBI BLink). protein_id AT1G21430.1p transcript_id AT1G21430.1 protein_id AT1G21430.1p transcript_id AT1G21430.1
At1g21440	chr1:007502325	0.0	C/7502325-7502690,7502781-7502936,7503045-7503064,7503174-7503198,7503385-7503467,7503663-7503736,7503817-7504103	AT1G21440.1 CDS Phosphoenolpyruvate carboxylase family protein [TAIR10] CDS gene_syn F24J8.7, F24J8_7 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function isocitrate lyase activity|GO:0004451||ISS product Phosphoenolpyruvate carboxylase family protein note Phosphoenolpyruvate carboxylase family protein; FUNCTIONS IN: isocitrate lyase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase/phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G77060.1); Has 8771 Blast hits to 8771 proteins in 1489 species: Archae - 119; Bacteria - 4900; Metazoa - 32; Fungi - 522; Plants - 172; Viruses - 0; Other Eukaryotes - 3026 (source: NCBI BLink). protein_id AT1G21440.1p transcript_id AT1G21440.1 protein_id AT1G21440.1p transcript_id AT1G21440.1
AT1G21440	chr1:007502325	0.0	C/7502325-7502690,7502781-7502936,7503045-7503064,7503174-7503198,7503385-7503467,7503663-7503736,7503817-7504103	AT1G21440.2 AT1G21440.2 CDS Phosphoenolpyruvate carboxylase family protein
At1g21450	chr1:007509721	0.0	W/7509721-7511502	AT1G21450.1 CDS SCARECROW-like 1 [TAIR10] CDS gene_syn F24J8.8, F24J8_8, SCARECROW-like 1, SCL1 gene SCL1 function Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product SCARECROW-like 1 note SCARECROW-like 1 (SCL1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G48150.2); Has 2480 Blast hits to 2441 proteins in 303 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2475; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G21450.1p transcript_id AT1G21450.1 protein_id AT1G21450.1p transcript_id AT1G21450.1
At1g21460	chr1:007512030	0.0	C/7512030-7512206,7512294-7512413,7512507-7512786,7512883-7512978,7513094-7513130,7513248-7513281	AT1G21460.1 CDS Nodulin MtN3 family protein [TAIR10] CDS gene_syn F24J8.9, F24J8_9 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_component membrane|GO:0016020||ISS go_process biological_process|GO:0008150||ND product Nodulin MtN3 family protein note Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT5G53190.1); Has 988 Blast hits to 930 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 0; Plants - 643; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). protein_id AT1G21460.1p transcript_id AT1G21460.1 protein_id AT1G21460.1p transcript_id AT1G21460.1
AT1G21460	chr1:007512252	0.0	C/7512252-7512413,7512507-7512786,7512883-7512978,7513094-7513130,7513248-7513281	AT1G21460.2 AT1G21460.2 CDS Nodulin MtN3 family protein
At1g21470	chr1:007516892	0.0	C/7516892-7517179	AT1G21470.1 CDS Clp amino terminal domain protein [TAIR10] CDS gene_syn F24J8.28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 326 Blast hits to 324 proteins in 95 species: Archae - 0; Bacteria - 130; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). protein_id AT1G21470.1p transcript_id AT1G21470.1 protein_id AT1G21470.1p transcript_id AT1G21470.1
At1g21480	chr1:007519116	0.0	C/7519116-7519345,7519446-7519581,7519676-7519819,7519955-7520173,7520431-7520500,7520600-7520664,7520772-7520918,7521049-7521426	AT1G21480.1 CDS Exostosin family protein [TAIR10] CDS gene_syn F24J8.10, F24J8_10 go_component Golgi apparatus|GO:0005794|16618929|IDA go_component membrane|GO:0016020||ISS go_process biological_process|GO:0008150||ND go_function catalytic activity|GO:0003824||ISS product Exostosin family protein note Exostosin family protein; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 1205 Blast hits to 1196 proteins in 102 species: Archae - 0; Bacteria - 8; Metazoa - 259; Fungi - 4; Plants - 850; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink). protein_id AT1G21480.1p transcript_id AT1G21480.1 protein_id AT1G21480.1p transcript_id AT1G21480.1
At1g21480	chr1:007519372	0.0	C/7519372-7519581,7519676-7519819,7519955-7520173,7520431-7520500,7520600-7520664,7520772-7520918,7521049-7521426	AT1G21480.2 CDS Exostosin family protein [TAIR10] CDS gene_syn F24J8.10, F24J8_10 go_component Golgi apparatus|GO:0005794|16618929|IDA go_component membrane|GO:0016020||ISS go_process biological_process|GO:0008150||ND go_function catalytic activity|GO:0003824||ISS product Exostosin family protein note Exostosin family protein; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G21480.2p transcript_id AT1G21480.2 protein_id AT1G21480.2p transcript_id AT1G21480.2
At1g21475	chr1:007524086	0.0	C/7524086-7524631	AT1G21475.1 CDS hypothetical protein (DUF506) [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF506) note Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G07350.1); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21475.1p transcript_id AT1G21475.1 protein_id AT1G21475.1p transcript_id AT1G21475.1
At1g21490	chr1:007527079	0.0	C/7527079-7528202	AT1G21490.1 [TAIR10] pseudogene
At1g21500	chr1:007530047	0.0	C/7530047-7530302,7530830-7530954	AT1G21500.1 CDS hypothetical protein [TAIR10] CDS gene_syn F24J8.11, F24J8_11 go_component 1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex|GO:0005943|11719511|ISS product unknown protein note unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21500.1p transcript_id AT1G21500.1 protein_id AT1G21500.1p transcript_id AT1G21500.1
At1g21510	chr1:007531534	0.0	C/7531534-7532505	AT1G21510.1 CDS TPRXL, putative [TAIR10] CDS gene_syn F24J8.12, F24J8_12 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; Has 380 Blast hits to 286 proteins in 63 species: Archae - 0; Bacteria - 6; Metazoa - 254; Fungi - 44; Plants - 13; Viruses - 5; Other Eukaryotes - 58 (source: NCBI BLink). protein_id AT1G21510.1p transcript_id AT1G21510.1 protein_id AT1G21510.1p transcript_id AT1G21510.1
At1g21520	chr1:007534533	0.0	C/7534533-7534733	AT1G21520.1 CDS hypothetical protein [TAIR10] CDS gene_syn F24J8.16, F24J8_16 go_component endoplasmic reticulum|GO:0005783|18614705|IMP go_process response to oxidative stress|GO:0006979|18614705|IMP go_process response to salt stress|GO:0009651|11351099|IEP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21520.1p transcript_id AT1G21520.1 protein_id AT1G21520.1p transcript_id AT1G21520.1
At1g21525	chr1:007537087	0.0	C/7537087-7537649	AT1G21525.1 [TAIR10] pseudogene
At1g21528	chr1:007542830	0.0	C/7542830-7543039	AT1G21528.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21528.1p transcript_id AT1G21528.1 protein_id AT1G21528.1p transcript_id AT1G21528.1
At1g21529	chr1:007543924	0.0	C/7543924-7544678	AT1G21529.1 [TAIR10] ncRNA product other RNA transcript_id AT1G21529.1
At1g21530	chr1:007545151	0.0	C/7545151-7545900,7546037-7546936	AT1G21530.2 CDS AMP-dependent synthetase and ligase family protein [TAIR10] CDS gene_syn F24J8.13, F24J8_13 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA product AMP-dependent synthetase and ligase family protein note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1); Has 77153 Blast hits to 70454 proteins in 3601 species: Archae - 1159; Bacteria - 50507; Metazoa - 3344; Fungi - 3637; Plants - 2272; Viruses - 1; Other Eukaryotes - 16233 (source: NCBI BLink). protein_id AT1G21530.2p transcript_id AT1G21530.2 protein_id AT1G21530.2p transcript_id AT1G21530.2
At1g21530	chr1:007545151	0.0	C/7545151-7545900,7546043-7546936	AT1G21530.1 CDS AMP-dependent synthetase and ligase family protein [TAIR10] CDS gene_syn F24J8.13, F24J8_13 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA product AMP-dependent synthetase and ligase family protein note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1); Has 77218 Blast hits to 70321 proteins in 3603 species: Archae - 1163; Bacteria - 50491; Metazoa - 3382; Fungi - 3676; Plants - 2327; Viruses - 1; Other Eukaryotes - 16178 (source: NCBI BLink). protein_id AT1G21530.1p transcript_id AT1G21530.1 protein_id AT1G21530.1p transcript_id AT1G21530.1
At1g21540	chr1:007548758	0.0	C/7548758-7549501,7549613-7550521	AT1G21540.1 CDS AMP-dependent synthetase and ligase family protein [TAIR10] CDS gene_syn F24J8.14, F24J8_14 go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA product AMP-dependent synthetase and ligase family protein note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2); Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132; Bacteria - 50179; Metazoa - 3309; Fungi - 3660; Plants - 2281; Viruses - 1; Other Eukaryotes - 16067 (source: NCBI BLink). protein_id AT1G21540.1p transcript_id AT1G21540.1 protein_id AT1G21540.1p transcript_id AT1G21540.1
At1g21550	chr1:007553317	0.0	C/7553317-7553784	AT1G21550.1 CDS Calcium-binding EF-hand family protein [TAIR10] CDS gene_syn F24J8.15, F24J8_15 go_function calcium ion binding|GO:0005509||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product Calcium-binding EF-hand family protein note Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 42 (TAIR:AT4G20780.1); Has 8971 Blast hits to 8616 proteins in 1133 species: Archae - 0; Bacteria - 20; Metazoa - 2955; Fungi - 1509; Plants - 3114; Viruses - 0; Other Eukaryotes - 1373 (source: NCBI BLink). protein_id AT1G21550.1p transcript_id AT1G21550.1 protein_id AT1G21550.1p transcript_id AT1G21550.1
At1g21560	chr1:007555208	0.0	W/7555208-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.2 CDS hypothetical protein [TAIR10] CDS gene_syn F24J8.19, F24J8_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1). protein_id AT1G21560.2p transcript_id AT1G21560.2 protein_id AT1G21560.2p transcript_id AT1G21560.2
At1g21560	chr1:007555208	0.0	W/7555208-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.3 CDS hypothetical protein [TAIR10] CDS gene_syn F24J8.19, F24J8_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1). protein_id AT1G21560.3p transcript_id AT1G21560.3 protein_id AT1G21560.3p transcript_id AT1G21560.3
AT1G21560	chr1:007555208	0.0	W/7555208-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.5 AT1G21560.5 CDS hypothetical protein
AT1G21560	chr1:007555208	0.0	W/7555208-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.6 AT1G21560.6 CDS hypothetical protein
AT1G21560	chr1:007555208	0.0	W/7555208-7556032,7556132-7556404	AT1G21560.4 AT1G21560.4 CDS hypothetical protein
At1g21560	chr1:007555430	0.0	W/7555430-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.1 CDS hypothetical protein [TAIR10] CDS gene_syn F24J8.19, F24J8_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1); Has 76 Blast hits to 76 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 2; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21560.1p transcript_id AT1G21560.1 protein_id AT1G21560.1p transcript_id AT1G21560.1
At1g21580	chr1:007557822	0.0	C/7557822-7558211,7558475-7558578,7558644-7558686,7558761-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.1 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein [TAIR10] CDS gene_syn F24J8.17, F24J8_17 go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Zinc finger C-x8-C-x5-C-x3-H type family protein note Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2; Bacteria - 615; Metazoa - 1993; Fungi - 936; Plants - 1540; Viruses - 149; Other Eukaryotes - 1177 (source: NCBI BLink). protein_id AT1G21580.1p transcript_id AT1G21580.1 protein_id AT1G21580.1p transcript_id AT1G21580.1
AT1G21580	chr1:007558445	0.0	C/7558445-7558578,7558644-7558686,7558761-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.4 AT1G21580.4 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G21580	chr1:007558501	0.0	C/7558501-7558578,7558644-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.3 AT1G21580.3 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G21580	chr1:007558501	0.0	C/7558501-7558578,7558644-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.6 AT1G21580.6 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G21580	chr1:007558501	0.0	C/7558501-7558686,7558761-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.7 AT1G21580.7 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G21580	chr1:007558501	0.0	C/7558501-7558686,7558761-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.8 AT1G21580.8 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G21580	chr1:007558593	0.0	C/7558593-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.2 AT1G21580.2 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G21580	chr1:007558593	0.0	C/7558593-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.5 AT1G21580.5 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G21580	chr1:007560568	0.0	C/7560568-7565655	AT1G21580.9 AT1G21580.9 CDS Zinc finger C-x8-C-x5-C-x3-H type family protein
At1g21590	chr1:007566613	0.0	C/7566613-7566858,7566963-7567112,7567203-7567350,7567441-7567520,7567601-7567764,7567844-7568092,7568197-7568931,7569032-7569281,7569360-7569457,7569544-7569694	AT1G21590.1 CDS Protein kinase protein with adenine nucleotide alpha hydrolases-like domain [TAIR10] CDS gene_syn F24J8.18, F24J8_18 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process response to stress|GO:0006950||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product Protein kinase protein with adenine nucleotide alpha hydrolases-like domain note Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G77280.1); Has 117833 Blast hits to 116515 proteins in 3694 species: Archae - 139; Bacteria - 13671; Metazoa - 42887; Fungi - 10197; Plants - 33102; Viruses - 429; Other Eukaryotes - 17408 (source: NCBI BLink). protein_id AT1G21590.1p transcript_id AT1G21590.1 protein_id AT1G21590.1p transcript_id AT1G21590.1
AT1G21590	chr1:007566613	0.0	C/7566613-7566858,7566963-7567112,7567203-7567350,7567441-7567520,7567601-7567764,7567844-7568092,7568197-7568931,7569032-7569281,7569360-7569488	AT1G21590.2 AT1G21590.2 CDS Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
At1g21600	chr1:007571514	0.0	C/7571514-7571630,7571742-7571831,7572122-7572241,7572476-7572580,7573128-7573196,7573297-7573782	AT1G21600.1 CDS plastid transcriptionally active 6 [TAIR10] CDS gene_syn F24J8.20, PTAC6, plastid transcriptionally active 6 gene PTAC6 function Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. go_component nucleoid|GO:0009295|16326926|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component plastid chromosome|GO:0009508|16326926|IDA go_process transcription from plastid promoter|GO:0042793|16326926|IMP go_process positive regulation of transcription, DNA-dependent|GO:0045893|16326926|IMP go_function molecular_function|GO:0003674||ND product plastid transcriptionally active 6 note plastid transcriptionally active 6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21600.1p transcript_id AT1G21600.1 protein_id AT1G21600.1p transcript_id AT1G21600.1
At1g21600	chr1:007571514	0.0	C/7571514-7571630,7571742-7571831,7572122-7572241,7572476-7572580,7573128-7573196,7573297-7573782	AT1G21600.2 CDS plastid transcriptionally active 6 [TAIR10] CDS gene_syn F24J8.20, PTAC6, plastid transcriptionally active 6 gene PTAC6 function Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. go_component nucleoid|GO:0009295|16326926|IDA go_component plastid chromosome|GO:0009508|16326926|IDA go_process transcription from plastid promoter|GO:0042793|16326926|IMP go_process positive regulation of transcription, DNA-dependent|GO:0045893|16326926|IMP go_function molecular_function|GO:0003674||ND product plastid transcriptionally active 6 note plastid transcriptionally active 6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G21600.2p transcript_id AT1G21600.2 protein_id AT1G21600.2p transcript_id AT1G21600.2
At1g21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576949-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578162,7578251-7578643	AT1G21610.1 CDS wound-responsive family protein [TAIR10] CDS gene_syn F24J8.24 go_component cellular_component|GO:0005575||ND go_process response to wounding|GO:0009611||ISS go_function molecular_function|GO:0003674||ND product wound-responsive family protein note wound-responsive family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 560 Blast hits to 534 proteins in 143 species: Archae - 0; Bacteria - 34; Metazoa - 261; Fungi - 64; Plants - 78; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G21610.1p transcript_id AT1G21610.1 protein_id AT1G21610.1p transcript_id AT1G21610.1
At1g21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576949-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578165,7578251-7578643	AT1G21610.3 CDS wound-responsive family protein [TAIR10] CDS gene_syn F24J8.24 go_component cellular_component|GO:0005575||ND go_process response to wounding|GO:0009611||ISS go_function molecular_function|GO:0003674||ND product wound-responsive family protein note wound-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1). protein_id AT1G21610.3p transcript_id AT1G21610.3 protein_id AT1G21610.3p transcript_id AT1G21610.3
At1g21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578162,7578251-7578643	AT1G21610.2 CDS wound-responsive family protein [TAIR10] CDS gene_syn F24J8.24 go_component cellular_component|GO:0005575||ND go_process response to wounding|GO:0009611||ISS go_function molecular_function|GO:0003674||ND product wound-responsive family protein note wound-responsive family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G21610.2p transcript_id AT1G21610.2 protein_id AT1G21610.2p transcript_id AT1G21610.2
AT1G21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577346,7577628-7577798	AT1G21610.5 AT1G21610.5 CDS wound-responsive family protein
AT1G21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577346,7577628-7577798	AT1G21610.6 AT1G21610.6 CDS wound-responsive family protein
AT1G21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577490	AT1G21610.4 AT1G21610.4 CDS wound-responsive family protein
At1g21620	chr1:007579129	0.0	W/7579129-7579336,7579380-7579691,7579765-7580171	AT1G21620.1 CDS pumilio 20 [TAIR10] CDS gene_syn APUM20, F24J8.22, PUM20, pumilio 20 gene PUM20 function Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. go_function RNA binding|GO:0003723||IEA go_function binding|GO:0005488||IEA go_function RNA binding|GO:0003723||ISS product pumilio 20 note pumilio 20 (PUM20); FUNCTIONS IN: RNA binding, binding; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 2073 Blast hits to 1204 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 801; Fungi - 431; Plants - 579; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink). protein_id AT1G21620.1p transcript_id AT1G21620.1 protein_id AT1G21620.1p transcript_id AT1G21620.1
AT1G21620	chr1:007579129	0.0	W/7579129-7579336,7579380-7580168	AT1G21620.2 AT1G21620.2 CDS pumilio 20
AT1G21630	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584341-7584430,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585524-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587170,7587237-7587796	AT1G21630.4 AT1G21630.4 CDS Calcium-binding EF hand family protein
At1g21630	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584341-7584430,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585524-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587796	AT1G21630.2 CDS Calcium-binding EF hand family protein [TAIR10] CDS gene_syn F8K7.4, F8K7_4 go_function calcium ion binding|GO:0005509||IEA go_component cytosol|GO:0005829|18433157|IDA go_function calcium ion binding|GO:0005509||ISS product Calcium-binding EF hand family protein note Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1). protein_id AT1G21630.2p transcript_id AT1G21630.2 protein_id AT1G21630.2p transcript_id AT1G21630.2
AT1G21630	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585521-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587170,7587237-7587796	AT1G21630.3 AT1G21630.3 CDS Calcium-binding EF hand family protein
At1g21630	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585521-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587796	AT1G21630.1 CDS Calcium-binding EF hand family protein [TAIR10] CDS gene_syn F8K7.4, F8K7_4 go_component plasma membrane|GO:0005886|17317660|IDA go_function calcium ion binding|GO:0005509||IEA go_component cytosol|GO:0005829|18433157|IDA go_function calcium ion binding|GO:0005509||ISS product Calcium-binding EF hand family protein note Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1); Has 21780 Blast hits to 9779 proteins in 834 species: Archae - 101; Bacteria - 6804; Metazoa - 6519; Fungi - 2817; Plants - 623; Viruses - 89; Other Eukaryotes - 4827 (source: NCBI BLink). protein_id AT1G21630.1p transcript_id AT1G21630.1 protein_id AT1G21630.1p transcript_id AT1G21630.1
At1g21640	chr1:007588726	0.0	W/7588726-7588956,7589170-7591026,7591100-7591263,7591353-7591494,7591594-7591818,7591967-7592041,7592187-7592288,7592466-7592669	AT1G21640.2 CDS NAD kinase 2 [TAIR10] CDS gene_syn ATNADK2, F8K7.5, F8K7_5, NAD KINASE 2, NAD kinase 2, NADK2 gene NADK2 function Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin. go_process metabolic process|GO:0008152||IEA go_process pyridine nucleotide biosynthetic process|GO:0019363||ISS go_function NAD+ kinase activity|GO:0003951|15247403|IDA go_function NAD+ kinase activity|GO:0003951||ISS go_function calmodulin binding|GO:0005516|15247403|IDA product NAD kinase 2 note NAD kinase 2 (NADK2); FUNCTIONS IN: NAD+ kinase activity, calmodulin binding; INVOLVED IN: pyridine nucleotide biosynthetic process, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type, alpha/beta (InterPro:IPR017438), ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504), ATP-NAD kinase, PpnK-type, all-beta (InterPro:IPR017437); BEST Arabidopsis thaliana protein match is: NAD kinase 1 (TAIR:AT3G21070.2). protein_id AT1G21640.2p transcript_id AT1G21640.2 protein_id AT1G21640.2p transcript_id AT1G21640.2
At1g21640	chr1:007588726	0.0	W/7588726-7588956,7589170-7591026,7591142-7591263,7591353-7591494,7591594-7591818,7591967-7592041,7592187-7592288,7592466-7592669	AT1G21640.1 CDS NAD kinase 2 [TAIR10] CDS gene_syn ATNADK2, F8K7.5, F8K7_5, NAD KINASE 2, NAD kinase 2, NADK2 gene NADK2 function Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin. go_component chloroplast|GO:0009507|18431481|IDA go_process metabolic process|GO:0008152||IEA go_process pyridine nucleotide biosynthetic process|GO:0019363||ISS go_function NAD+ kinase activity|GO:0003951|15247403|IDA go_function NAD+ kinase activity|GO:0003951||ISS go_function calmodulin binding|GO:0005516|15247403|IDA product NAD kinase 2 note NAD kinase 2 (NADK2); FUNCTIONS IN: NAD+ kinase activity, calmodulin binding; INVOLVED IN: pyridine nucleotide biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type, alpha/beta (InterPro:IPR017438), ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504), ATP-NAD kinase, PpnK-type, all-beta (InterPro:IPR017437); BEST Arabidopsis thaliana protein match is: NAD kinase 1 (TAIR:AT3G21070.2); Has 8697 Blast hits to 8591 proteins in 2758 species: Archae - 277; Bacteria - 5531; Metazoa - 247; Fungi - 416; Plants - 137; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink). protein_id AT1G21640.1p transcript_id AT1G21640.1 protein_id AT1G21640.1p transcript_id AT1G21640.1
At1g21650	chr1:007592891	0.0	C/7592891-7593055,7593139-7593213,7593294-7593417,7593517-7593685,7593811-7593880,7593988-7594042,7594149-7594228,7594566-7594646,7594757-7594874,7595055-7595110,7595438-7595727,7595838-7595901,7596034-7596129,7596312-7596425,7596515-7596593,7596887-7596972,7597076-7597171,7597283-7597375,7597460-7597543,7597701-7597791,7598248-7598363,7598467-7598532,7598705-7598792,7598856-7598920,7599008-7599073,7599165-7599256,7599433-7599553,7599665-7599729,7599872-7599941,7600030-7600164,7600405-7600590	AT1G21650.1 CDS Preprotein translocase SecA family protein [TAIR10] CDS gene_syn F8K7.7, F8K7_7 go_component chloroplast|GO:0009507||IEA go_component internal side of plasma membrane|GO:0009898||IEA go_component membrane|GO:0016020||IEA go_process protein targeting|GO:0006605||IEA go_process intracellular protein transport|GO:0006886||IEA go_process protein import|GO:0017038||IEA go_process protein transport by the Sec complex|GO:0043952||IEA go_function ATP binding|GO:0005524||IEA go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA go_function ATPase activity|GO:0016887||IEA go_process intracellular protein transport|GO:0006886||ISS go_function ATP binding|GO:0005524||ISS product Preprotein translocase SecA family protein note Preprotein translocase SecA family protein; FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein transport by the Sec complex, protein import; LOCATED IN: internal side of plasma membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA, preprotein translocase (InterPro:IPR022491), SecA motor DEAD (InterPro:IPR014018), SecA Wing/Scaffold (InterPro:IPR011116), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA conserved site (InterPro:IPR020937), SecA DEAD-like (InterPro:IPR011115), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Albino or Glassy Yellow 1 (TAIR:AT4G01800.1); Has 21976 Blast hits to 13078 proteins in 2820 species: Archae - 0; Bacteria - 13647; Metazoa - 53; Fungi - 1; Plants - 97; Viruses - 0; Other Eukaryotes - 8178 (source: NCBI BLink). protein_id AT1G21650.1p transcript_id AT1G21650.1 protein_id AT1G21650.1p transcript_id AT1G21650.1
At1g21650	chr1:007592891	0.0	C/7592891-7593055,7593139-7593213,7593294-7593417,7593517-7593706,7593811-7593880,7593988-7594042,7594149-7594228,7594566-7594646,7594757-7594874,7595055-7595110,7595438-7595727,7595838-7595901,7596034-7596129,7596312-7596425,7596515-7596593,7596887-7596972,7597076-7597171,7597283-7597375,7597460-7597543,7597701-7597791,7598248-7598363,7598467-7598532,7598705-7598792,7598856-7598920,7599008-7599073,7599165-7599256,7599433-7599553,7599665-7599729,7599872-7599941,7600018-7600164,7601186-7601314,7601450-7601569,7601665-7601901,7601983-7602255,7602386-7602441,7602553-7604152	AT1G21650.3 CDS Preprotein translocase SecA family protein [TAIR10] CDS gene_syn F8K7.7, F8K7_7 go_component internal side of plasma membrane|GO:0009898||IEA go_component membrane|GO:0016020||IEA go_process protein targeting|GO:0006605||IEA go_process intracellular protein transport|GO:0006886||IEA go_process protein import|GO:0017038||IEA go_process protein transport by the Sec complex|GO:0043952||IEA go_function ATP binding|GO:0005524||IEA go_function zinc ion binding|GO:0008270||IEA go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA go_function ATPase activity|GO:0016887||IEA go_process intracellular protein transport|GO:0006886||ISS go_function ATP binding|GO:0005524||ISS product Preprotein translocase SecA family protein note Preprotein translocase SecA family protein; FUNCTIONS IN: ATPase activity, zinc ion binding, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein transport by the Sec complex, protein import; LOCATED IN: internal side of plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), SecA, preprotein translocase (InterPro:IPR022491), WD40 repeat (InterPro:IPR001680), SecA motor DEAD (InterPro:IPR014018), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), SecA Wing/Scaffold (InterPro:IPR011116), WD40-repeat-containing domain (InterPro:IPR017986), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), SecA conserved site (InterPro:IPR020937), WD40 repeat, subgroup (InterPro:IPR019781), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G21651.1). protein_id AT1G21650.3p transcript_id AT1G21650.3 protein_id AT1G21650.3p transcript_id AT1G21650.3
At1g21650	chr1:007592891	0.0	C/7592891-7593055,7593139-7593213,7593294-7593417,7593517-7593706,7593811-7593880,7593988-7594042,7594149-7594228,7594566-7594646,7594757-7594874,7595055-7595110,7595438-7595727,7595838-7595901,7596034-7596129,7596312-7596425,7596515-7596593,7596887-7596972,7597076-7597171,7597283-7597375,7597460-7597543,7597701-7597791,7598248-7598363,7598467-7598532,7598705-7598792,7598856-7598920,7599008-7599073,7599165-7599256,7599433-7599553,7599665-7599729,7599872-7599941,7600030-7600164,7600405-7600590	AT1G21650.2 CDS Preprotein translocase SecA family protein [TAIR10] CDS gene_syn F8K7.7, F8K7_7 go_component chloroplast|GO:0009507||IEA go_component internal side of plasma membrane|GO:0009898||IEA go_component membrane|GO:0016020||IEA go_process protein targeting|GO:0006605||IEA go_process intracellular protein transport|GO:0006886||IEA go_process protein import|GO:0017038||IEA go_process protein transport by the Sec complex|GO:0043952||IEA go_function ATP binding|GO:0005524||IEA go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA go_function ATPase activity|GO:0016887||IEA go_process intracellular protein transport|GO:0006886||ISS go_function ATP binding|GO:0005524||ISS product Preprotein translocase SecA family protein note Preprotein translocase SecA family protein; FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein import, protein transport by the Sec complex; LOCATED IN: internal side of plasma membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA Wing/Scaffold (InterPro:IPR011116), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA, preprotein translocase (InterPro:IPR022491), SecA DEAD-like (InterPro:IPR011115), SecA conserved site (InterPro:IPR020937), SecA motor DEAD (InterPro:IPR014018), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Albino or Glassy Yellow 1 (TAIR:AT4G01800.1). protein_id AT1G21650.2p transcript_id AT1G21650.2 protein_id AT1G21650.2p transcript_id AT1G21650.2
At1g21651	chr1:007601061	0.0	C/7601061-7601081,7601186-7601314,7601450-7601569,7601665-7601901,7601983-7602255,7602386-7602441,7602553-7604152	AT1G21651.1 CDS zinc ion binding [TAIR10] CDS go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product zinc ion binding note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Preprotein translocase SecA family protein (TAIR:AT1G21650.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G21651.1p transcript_id AT1G21651.1 protein_id AT1G21651.1p transcript_id AT1G21651.1
At1g21660	chr1:007605924	0.0	W/7605924-7606504,7606707-7606903,7606998-7607206,7607307-7607421,7607502-7607599,7607921-7607986,7608195-7608284,7608386-7608562,7608797-7608835	AT1G21660.1 CDS Chaperone DnaJ-domain superfamily protein [TAIR10] CDS gene_syn F8K7.8, F8K7_8 go_function heat shock protein binding|GO:0031072||IEA go_component cellular_component|GO:0005575||ND product Chaperone DnaJ-domain superfamily protein note Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G12770.1); Has 3482 Blast hits to 1316 proteins in 282 species: Archae - 0; Bacteria - 662; Metazoa - 522; Fungi - 399; Plants - 281; Viruses - 8; Other Eukaryotes - 1610 (source: NCBI BLink). protein_id AT1G21660.1p transcript_id AT1G21660.1 protein_id AT1G21660.1p transcript_id AT1G21660.1
At1g21670	chr1:007610409	0.0	W/7610409-7612520	AT1G21670.1 CDS DPP6 amino-terminal domain protein [TAIR10] CDS gene_syn F8K7.9, F8K7_9 go_component cell wall|GO:0005618|15593128|IDA go_component plant-type cell wall|GO:0009505|17526915|IDA product unknown protein note LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1); Has 8461 Blast hits to 5060 proteins in 1257 species: Archae - 79; Bacteria - 5567; Metazoa - 37; Fungi - 70; Plants - 117; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink). protein_id AT1G21670.1p transcript_id AT1G21670.1 protein_id AT1G21670.1p transcript_id AT1G21670.1
At1g21680	chr1:007613028	0.0	W/7613028-7615148	AT1G21680.1 CDS DPP6 N-terminal domain-like protein [TAIR10] CDS gene_syn F8K7.10, F8K7_10 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plant-type cell wall|GO:0009505|17526915|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product DPP6 N-terminal domain-like protein note DPP6 N-terminal domain-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1); Has 9463 Blast hits to 5353 proteins in 1263 species: Archae - 75; Bacteria - 6165; Metazoa - 47; Fungi - 60; Plants - 122; Viruses - 0; Other Eukaryotes - 2994 (source: NCBI BLink). protein_id AT1G21680.1p transcript_id AT1G21680.1 protein_id AT1G21680.1p transcript_id AT1G21680.1
At1g21690	chr1:007615675	0.0	W/7615675-7615718,7615805-7615847,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.2 CDS ATPase family associated with various cellular activities (AAA) [TAIR10] CDS gene_syn EMB1968, F8K7.11, F8K7_11, RFC4, embryo defective 1968, replication factor C 4 gene EMB1968 go_component nucleolus|GO:0005730|15496452|IDA go_function nucleotide binding|GO:0000166||IEA go_function DNA binding|GO:0003677||IEA go_function DNA clamp loader activity|GO:0003689||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_component DNA replication factor C complex|GO:0005663||ISS go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function ATPase activity|GO:0016887||ISS product ATPase family associated with various cellular activities (AAA) note embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1); Has 15923 Blast hits to 15883 proteins in 2832 species: Archae - 621; Bacteria - 8688; Metazoa - 715; Fungi - 897; Plants - 379; Viruses - 88; Other Eukaryotes - 4535 (source: NCBI BLink). protein_id AT1G21690.2p transcript_id AT1G21690.2 protein_id AT1G21690.2p transcript_id AT1G21690.2
At1g21690	chr1:007615675	0.0	W/7615675-7615718,7615805-7615883,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.1 CDS ATPase family associated with various cellular activities (AAA) [TAIR10] CDS gene_syn EMB1968, F8K7.11, F8K7_11, RFC4, embryo defective 1968, replication factor C 4 gene EMB1968 go_component nucleolus|GO:0005730|15496452|IDA go_function nucleotide binding|GO:0000166||IEA go_function DNA binding|GO:0003677||IEA go_function DNA clamp loader activity|GO:0003689||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_component DNA replication factor C complex|GO:0005663||ISS go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function ATPase activity|GO:0016887||ISS product ATPase family associated with various cellular activities (AAA) note embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1); Has 18128 Blast hits to 18077 proteins in 2897 species: Archae - 631; Bacteria - 10254; Metazoa - 847; Fungi - 935; Plants - 386; Viruses - 88; Other Eukaryotes - 4987 (source: NCBI BLink). protein_id AT1G21690.1p transcript_id AT1G21690.1 protein_id AT1G21690.1p transcript_id AT1G21690.1
At1g21690	chr1:007615675	0.0	W/7615675-7615718,7615805-7615883,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618323-7618421	AT1G21690.3 CDS ATPase family associated with various cellular activities (AAA) [TAIR10] CDS gene_syn EMB1968, F8K7.11, F8K7_11, RFC4, embryo defective 1968, replication factor C 4 gene EMB1968 go_function nucleotide binding|GO:0000166||IEA go_function DNA binding|GO:0003677||IEA go_function DNA clamp loader activity|GO:0003689||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_component DNA replication factor C complex|GO:0005663||ISS go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function ATPase activity|GO:0016887||ISS product ATPase family associated with various cellular activities (AAA) note embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C subunit 3 (TAIR:AT1G77470.1). protein_id AT1G21690.3p transcript_id AT1G21690.3 protein_id AT1G21690.3p transcript_id AT1G21690.3
At1g21690	chr1:007615675	0.0	W/7615675-7615718,7615805-7615883,7616028-7616107,7616625-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.4 CDS ATPase family associated with various cellular activities (AAA) [TAIR10] CDS gene_syn EMB1968, F8K7.11, F8K7_11, RFC4, embryo defective 1968, replication factor C 4 gene EMB1968 go_function nucleotide binding|GO:0000166||IEA go_function DNA binding|GO:0003677||IEA go_function DNA clamp loader activity|GO:0003689||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_component DNA replication factor C complex|GO:0005663||ISS go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function ATPase activity|GO:0016887||ISS product ATPase family associated with various cellular activities (AAA) note embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). protein_id AT1G21690.4p transcript_id AT1G21690.4 protein_id AT1G21690.4p transcript_id AT1G21690.4
At1g21695	chr1:007619132	0.0	W/7619132-7619785	AT1G21695.1 CDS hydroxyproline-rich glycoprotein family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77400.1); Has 5872 Blast hits to 1129 proteins in 201 species: Archae - 0; Bacteria - 86; Metazoa - 581; Fungi - 299; Plants - 356; Viruses - 57; Other Eukaryotes - 4493 (source: NCBI BLink). protein_id AT1G21695.1p transcript_id AT1G21695.1 protein_id AT1G21695.1p transcript_id AT1G21695.1
At1g21700	chr1:007620156	0.0	C/7620156-7620731,7620828-7621003,7621105-7621172,7621268-7621353,7621549-7621622,7621715-7622072,7622229-7622767,7623294-7623824,7623963-7623978	AT1G21700.1 CDS SWITCH/sucrose nonfermenting 3C [TAIR10] CDS gene_syn ATSWI3C, CHB4, CHROMATIN REMODELING COMPLEX SUBUNIT B, F8K7.13, F8K7_13, SWI3C, SWITCH/sucrose nonfermenting 3C gene SWI3C function a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003). go_function DNA binding|GO:0003677||IEA go_component SWI/SNF complex|GO:0016514|12140326|ISS go_component chromatin remodeling complex|GO:0016585||ISS go_process chromatin remodeling|GO:0006338|12140326|ISS go_function DNA binding|GO:0003677||ISS product SWITCH/sucrose nonfermenting 3C note SWITCH/sucrose nonfermenting 3C (SWI3C); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, chromatin remodeling complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G34430.3); Has 4703 Blast hits to 3623 proteins in 273 species: Archae - 0; Bacteria - 43; Metazoa - 1892; Fungi - 779; Plants - 380; Viruses - 2; Other Eukaryotes - 1607 (source: NCBI BLink). protein_id AT1G21700.1p transcript_id AT1G21700.1 protein_id AT1G21700.1p transcript_id AT1G21700.1
At1g21710	chr1:007624439	0.0	W/7624439-7625082,7625300-7625510,7625627-7625869	AT1G21710.1 CDS 8-oxoguanine-DNA glycosylase 1 [TAIR10] CDS gene_syn 8-oxoguanine-DNA glycosylase 1, ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, ATOGG1, F8K7.14, F8K7_14, OGG1 gene OGG1 function Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme. go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281|12627976|IDA go_process base-excision repair|GO:0006284||ISS go_function oxidized purine base lesion DNA N-glycosylase activity|GO:0008534|12627976|IDA product 8-oxoguanine-DNA glycosylase 1 note 8-oxoguanine-DNA glycosylase 1 (OGG1); FUNCTIONS IN: oxidized purine base lesion DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294), 8-oxoguanine DNA glycosylase, N-terminal (InterPro:IPR012904), HhH-GPD domain (InterPro:IPR003265); Has 951 Blast hits to 936 proteins in 417 species: Archae - 106; Bacteria - 332; Metazoa - 176; Fungi - 163; Plants - 46; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). protein_id AT1G21710.1p transcript_id AT1G21710.1 protein_id AT1G21710.1p transcript_id AT1G21710.1
At1g21720	chr1:007626394	0.0	W/7626394-7626399,7626519-7626700,7626810-7626917,7627079-7627168,7627427-7627511,7627838-7627932,7628022-7628070	AT1G21720.1 CDS proteasome beta subunit C1 [TAIR10] CDS gene_syn 20S PROTEASOME BETA SUBUNIT PBC1, F8K7.15, F8K7_15, PBC1, proteasome beta subunit C1 gene PBC1 function 20S proteasome beta subunit PBC1 truncated protein (PBC1) go_component plasma membrane|GO:0005886|17151019|IDA go_function endopeptidase activity|GO:0004175||IEA go_function threonine-type endopeptidase activity|GO:0004298||IEA go_component proteasome complex|GO:0000502|20516081|IDA go_component proteasome core complex|GO:0005839|9373170|TAS go_component proteasome core complex|GO:0005839|9611183|TAS go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS go_function peptidase activity|GO:0008233||ISS product proteasome beta subunit C1 note proteasome beta subunit C1 (PBC1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit C2 (TAIR:AT1G77440.2); Has 3309 Blast hits to 3309 proteins in 436 species: Archae - 498; Bacteria - 34; Metazoa - 1257; Fungi - 828; Plants - 282; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink). protein_id AT1G21720.1p transcript_id AT1G21720.1 protein_id AT1G21720.1p transcript_id AT1G21720.1
At1g21722	chr1:007628456	0.0	W/7628456-7628553,7628649-7629252	AT1G21722.1 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78922.1); Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G21722.1p transcript_id AT1G21722.1 protein_id AT1G21722.1p transcript_id AT1G21722.1
At1g21730	chr1:007630365	0.0	W/7630365-7630621,7630718-7630815,7630905-7630994,7631144-7631196,7631345-7631410,7631494-7631547,7631902-7631961,7632090-7632168,7632461-7632528,7632656-7632718,7632839-7632943,7633021-7633125,7633328-7633435,7633516-7633632,7633879-7634043,7634174-7634344,7634501-7634698,7634910-7635050,7635140-7635265,7635393-7635443,7635556-7635603,7635702-7635953,7636050-7636247	AT1G21730.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F8K7.17, F8K7_17 go_component plasma membrane|GO:0005886|17317660|IDA go_process microtubule-based movement|GO:0007018||IEA go_function microtubule motor activity|GO:0003777||IEA go_function ATP binding|GO:0005524||IEA go_function microtubule motor activity|GO:0003777||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G06670.1); Has 16169 Blast hits to 14119 proteins in 580 species: Archae - 38; Bacteria - 464; Metazoa - 7403; Fungi - 1809; Plants - 2013; Viruses - 19; Other Eukaryotes - 4423 (source: NCBI BLink). protein_id AT1G21730.1p transcript_id AT1G21730.1 protein_id AT1G21730.1p transcript_id AT1G21730.1
At1g21738	chr1:007641002	0.0	C/7641002-7641094	AT1G21738.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G21738.1p transcript_id AT1G21738.1 protein_id AT1G21738.1p transcript_id AT1G21738.1
At1g21740	chr1:007641580	0.0	W/7641580-7643197,7643669-7643877,7643964-7644187,7644268-7645078	AT1G21740.1 CDS DUF630 family protein, putative (DUF630 and DUF632) [TAIR10] CDS gene_syn F8K7.18, F8K7_18 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA product Protein of unknown function (DUF630 and DUF632) note Protein of unknown function (DUF630 and DUF632); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT1G77500.1); Has 1513 Blast hits to 1244 proteins in 193 species: Archae - 7; Bacteria - 66; Metazoa - 463; Fungi - 80; Plants - 701; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink). protein_id AT1G21740.1p transcript_id AT1G21740.1 protein_id AT1G21740.1p transcript_id AT1G21740.1
At1g21750	chr1:007645767	0.0	W/7645767-7645939,7646330-7646360,7646471-7646758,7646851-7647039,7647116-7647241,7647553-7647690,7647787-7648024,7648116-7648228,7648305-7648411,7648635-7648695	AT1G21750.2 CDS PDI-like 1-1 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDI5, ATPDIL1-1, F8K7.19, F8K7_19, PDI-like 1-1, PDI5, PDIL1-1, PROTEIN DISULFIDE ISOMERASE 5 gene PDIL1-1 function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. go_component vacuole|GO:0005773|15539469|IDA go_component plant-type cell wall|GO:0009505|17526915|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_component protein storage vacuole|GO:0000326|18676877|IDA go_component lytic vacuole within protein storage vacuole|GO:0000327|18676877|IDA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process embryo development|GO:0009790|18676877|IMP go_process response to zinc ion|GO:0010043|19880396|IEP go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP go_process regulation of programmed cell death|GO:0043067|18676877|IMP go_process seed development|GO:0048316|18676877|IMP go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS go_function protein disulfide isomerase activity|GO:0003756||ISS product PDI-like 1-1 note PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 30765 Blast hits to 17459 proteins in 2902 species: Archae - 337; Bacteria - 14753; Metazoa - 5498; Fungi - 1629; Plants - 2433; Viruses - 29; Other Eukaryotes - 6086 (source: NCBI BLink). protein_id AT1G21750.2p transcript_id AT1G21750.2 protein_id AT1G21750.2p transcript_id AT1G21750.2
At1g21750	chr1:007645767	0.0	W/7645767-7645939,7646330-7646360,7646471-7646758,7646851-7647039,7647116-7647241,7647553-7647690,7647787-7648024,7648116-7648228,7648305-7648514	AT1G21750.1 CDS PDI-like 1-1 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDI5, ATPDIL1-1, F8K7.19, F8K7_19, PDI-like 1-1, PDI5, PDIL1-1, PROTEIN DISULFIDE ISOMERASE 5 gene PDIL1-1 function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. go_component vacuole|GO:0005773|15539469|IDA go_component plant-type cell wall|GO:0009505|17526915|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_component protein storage vacuole|GO:0000326|18676877|IDA go_component lytic vacuole within protein storage vacuole|GO:0000327|18676877|IDA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process embryo development|GO:0009790|18676877|IMP go_process response to zinc ion|GO:0010043|19880396|IEP go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP go_process regulation of programmed cell death|GO:0043067|18676877|IMP go_process seed development|GO:0048316|18676877|IMP go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS go_function protein disulfide isomerase activity|GO:0003756||ISS product PDI-like 1-1 note PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788), Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 31573 Blast hits to 17834 proteins in 2924 species: Archae - 337; Bacteria - 15428; Metazoa - 5451; Fungi - 1644; Plants - 2422; Viruses - 29; Other Eukaryotes - 6262 (source: NCBI BLink). protein_id AT1G21750.1p transcript_id AT1G21750.1 protein_id AT1G21750.1p transcript_id AT1G21750.1
At1g21760	chr1:007649324	0.0	W/7649324-7649333,7649720-7649803,7649896-7650008,7650103-7650316,7650451-7650524,7650619-7650672,7650768-7650875,7650964-7651022,7651254-7651464,7651554-7651613	AT1G21760.1 CDS F-box protein 7 [TAIR10] CDS gene_syn ATFBP7, F-BOX PROTEIN 7, F-box protein 7, F8K7.20, F8K7_20, FBP7 gene FBP7 function This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures. go_component nucleus|GO:0005634|17240087|IDA go_component mitochondrion|GO:0005739|17240087|IDA go_process regulation of translation|GO:0006417|17240087|IMP go_process response to heat|GO:0009408|17240087|IMP go_process response to cold|GO:0009409|17240087|IMP go_function molecular_function|GO:0003674||ND product F-box protein 7 note F-box protein 7 (FBP7); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 471 Blast hits to 471 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 249; Fungi - 132; Plants - 70; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT1G21760.1p transcript_id AT1G21760.1 protein_id AT1G21760.1p transcript_id AT1G21760.1
AT1G21760	chr1:007649512	0.0	W/7649512-7649521,7649720-7649803,7649896-7650008,7650103-7650316,7650451-7650524,7650619-7650672,7650768-7650875,7650964-7651022,7651254-7651464,7651554-7651613	AT1G21760.2 AT1G21760.2 CDS F-box protein 7
At1g21770	chr1:007651843	0.0	C/7651843-7651926,7651998-7652249	AT1G21770.1 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein [TAIR10] CDS gene_syn F8K7.21, F8K7_21 go_component peroxisome|GO:0005777|17951448|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Acyl-CoA N-acyltransferases (NAT) superfamily protein note Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT1G77540.1); Has 425 Blast hits to 425 proteins in 193 species: Archae - 10; Bacteria - 360; Metazoa - 6; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G21770.1p transcript_id AT1G21770.1 protein_id AT1G21770.1p transcript_id AT1G21770.1
At1g21780	chr1:007652476	0.0	W/7652476-7652588,7652668-7652813,7653054-7653169,7653261-7653866	AT1G21780.1 CDS BTB/POZ domain-containing protein [TAIR10] CDS gene_syn F8K7.22, F8K7_22 function BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B. go_component Cul3-RING ubiquitin ligase complex|GO:0031463|15659098|IPI go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|15659098|IPI product BTB/POZ domain-containing protein note BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink). protein_id AT1G21780.1p transcript_id AT1G21780.1 protein_id AT1G21780.1p transcript_id AT1G21780.1
At1g21780	chr1:007652476	0.0	W/7652476-7652588,7652668-7652813,7653054-7653169,7653261-7653866	AT1G21780.2 CDS BTB/POZ domain-containing protein [TAIR10] CDS gene_syn F8K7.22, F8K7_22 function BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B. go_component Cul3-RING ubiquitin ligase complex|GO:0031463|15659098|IPI go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|15659098|IPI product BTB/POZ domain-containing protein note BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink). protein_id AT1G21780.2p transcript_id AT1G21780.2 protein_id AT1G21780.2p transcript_id AT1G21780.2
At1g21790	chr1:007654357	0.0	W/7654357-7654615,7654893-7655170,7655362-7655691	AT1G21790.1 CDS TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [TAIR10] CDS gene_syn F8K7.23, F8K7_23 go_component integral to membrane|GO:0016021||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein note TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); Has 174 Blast hits to 174 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G21790.1p transcript_id AT1G21790.1 protein_id AT1G21790.1p transcript_id AT1G21790.1
At1g21800	chr1:007656120	0.0	C/7656120-7656191	AT1G21800.1 [TAIR10] tRNA gene_syn 51452.TRNA-GLN-1, 52107.TRNA-GLN-1, AT1G21805 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Gln (anticodon: TTG) transcript_id AT1G21800.1
AT1G21810	chr1:007656578	0.0	C/7656578-7656964,7657051-7658184	AT1G21810.2 AT1G21810.2 CDS filament-like protein (DUF869)
At1g21810	chr1:007656578	0.0	C/7656578-7656964,7657051-7658456,7658541-7658637	AT1G21810.1 CDS filament-like protein (DUF869) [TAIR10] CDS gene_syn T26F17.2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF869) note Plant protein of unknown function (DUF869); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G77580.1); Has 79141 Blast hits to 43153 proteins in 2526 species: Archae - 1269; Bacteria - 11097; Metazoa - 38829; Fungi - 6739; Plants - 4917; Viruses - 325; Other Eukaryotes - 15965 (source: NCBI BLink). protein_id AT1G21810.1p transcript_id AT1G21810.1 protein_id AT1G21810.1p transcript_id AT1G21810.1
AT1G21810	chr1:007656578	0.0	C/7656578-7656964,7657051-7658456,7658541-7658637	AT1G21810.3 AT1G21810.3 CDS filament-like protein (DUF869)
At1g21830	chr1:007661429	0.0	C/7661429-7661784,7662257-7662521	AT1G21830.1 CDS hypothetical protein [TAIR10] CDS gene_syn AT1G21820, T26F17.4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21830.1p transcript_id AT1G21830.1 protein_id AT1G21830.1p transcript_id AT1G21830.1
At1g21835	chr1:007665664	0.0	W/7665664-7665936	AT1G21835.1 CDS Plant thionin family protein [TAIR10] CDS function Encodes a Plant thionin family protein go_component endomembrane system|GO:0012505||IEA product Plant thionin family protein note Plant thionin family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G34792.1); Has 72 Blast hits to 72 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21835.1p transcript_id AT1G21835.1 protein_id AT1G21835.1p transcript_id AT1G21835.1
At1g21840	chr1:007666859	0.0	W/7666859-7667581	AT1G21840.1 CDS urease accessory protein F [TAIR10] CDS gene_syn T26F17.5, UREF, urease accessory protein F gene UREF function Encodes a urease accessory protein which is essential for the activation of plant urease. go_function nickel ion binding|GO:0016151||IEA go_component cellular_component|GO:0005575||ND go_process nitrogen compound metabolic process|GO:0006807|16244137|IMP go_process positive regulation of metalloenzyme activity|GO:0048554|16244137|IMP product urease accessory protein F note urease accessory protein F (UREF); FUNCTIONS IN: nickel ion binding; INVOLVED IN: nitrogen compound metabolic process, positive regulation of metalloenzyme activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Urease accessory protein UreF (InterPro:IPR002639); Has 962 Blast hits to 961 proteins in 436 species: Archae - 16; Bacteria - 785; Metazoa - 9; Fungi - 76; Plants - 41; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G21840.1p transcript_id AT1G21840.1 protein_id AT1G21840.1p transcript_id AT1G21840.1
AT1G21840	chr1:007666859	0.0	W/7666859-7667581	AT1G21840.2 AT1G21840.2 CDS urease accessory protein F
At1g21850	chr1:007667803	0.0	C/7667803-7668045,7668147-7668225,7668363-7668728,7668859-7669201,7669289-7669388,7669605-7669875,7670192-7670301,7670387-7670530	AT1G21850.1 CDS SKU5 similar 8 [TAIR10] CDS gene_syn SKU5 similar 8, T26F17.6, T26F17_6, sks8 gene sks8 go_component endomembrane system|GO:0012505||IEA go_process oxidation reduction|GO:0055114||IEA go_function copper ion binding|GO:0005507||IEA go_function oxidoreductase activity|GO:0016491||IEA product SKU5 similar 8 note SKU5 similar 8 (sks8); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 7 (TAIR:AT1G21860.1); Has 5145 Blast hits to 5091 proteins in 951 species: Archae - 16; Bacteria - 1604; Metazoa - 263; Fungi - 1857; Plants - 1262; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). protein_id AT1G21850.1p transcript_id AT1G21850.1 protein_id AT1G21850.1p transcript_id AT1G21850.1
At1g21860	chr1:007671028	0.0	C/7671028-7671231,7671329-7671407,7671624-7671989,7672253-7672595,7672680-7672779,7672954-7673224,7673863-7673972,7674072-7674215	AT1G21860.1 CDS SKU5 similar 7 [TAIR10] CDS gene_syn SKU5 similar 7, T26F17.7, T26F17_7, sks7 gene sks7 go_component plant-type cell wall|GO:0009505|17526915|IDA go_process oxidation reduction|GO:0055114||IEA go_function copper ion binding|GO:0005507||IEA go_function oxidoreductase activity|GO:0016491||IEA product SKU5 similar 7 note SKU5 similar 7 (sks7); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 8 (TAIR:AT1G21850.1); Has 5059 Blast hits to 4986 proteins in 916 species: Archae - 16; Bacteria - 1499; Metazoa - 256; Fungi - 1883; Plants - 1282; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G21860.1p transcript_id AT1G21860.1 protein_id AT1G21860.1p transcript_id AT1G21860.1
At1g21864	chr1:007675565	0.0	W/7675565-7675846	AT1G21864.1 CDS Plant thionin family protein [TAIR10] CDS function Encodes a Plant thionin family protein go_component endomembrane system|GO:0012505||IEA product Plant thionin family protein note Plant thionin family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G21866.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G21864.1p transcript_id AT1G21864.1 protein_id AT1G21864.1p transcript_id AT1G21864.1
At1g21866	chr1:007677499	0.0	W/7677499-7677780	AT1G21866.1 CDS Plant thionin family protein [TAIR10] CDS function Encodes a Plant thionin family protein go_component endomembrane system|GO:0012505||IEA product Plant thionin family protein note Plant thionin family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G21864.1); Has 72 Blast hits to 72 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21866.1p transcript_id AT1G21866.1 protein_id AT1G21866.1p transcript_id AT1G21866.1
At1g21870	chr1:007678208	0.0	W/7678208-7678321,7678418-7678667,7678763-7678970,7679153-7679384,7679476-7679697	AT1G21870.1 CDS golgi nucleotide sugar transporter 5 [TAIR10] CDS gene_syn GONST5, T26F17.9, T26F17_9, golgi nucleotide sugar transporter 5 gene GONST5 function Encodes a Golgi-localized nucleotide-sugar transporter. go_component Golgi apparatus|GO:0005794|15480787|IDA go_process nucleotide-sugar transport|GO:0015780|15480787|IGI go_function organic anion transmembrane transporter activity|GO:0008514||ISS product golgi nucleotide sugar transporter 5 note golgi nucleotide sugar transporter 5 (GONST5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: EamA-like transporter family protein (TAIR:AT1G77610.1); Has 3294 Blast hits to 3291 proteins in 314 species: Archae - 0; Bacteria - 80; Metazoa - 703; Fungi - 565; Plants - 1531; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink). protein_id AT1G21870.1p transcript_id AT1G21870.1 protein_id AT1G21870.1p transcript_id AT1G21870.1
At1g21880	chr1:007680689	0.0	W/7680689-7681355,7681667-7681784,7681883-7682044,7682136-7682167,7682255-7682526	AT1G21880.2 CDS lysm domain GPI-anchored protein 1 precursor [TAIR10] CDS gene_syn LYM1, T26F17.10, T26F17_10, lysm domain GPI-anchored protein 1 precursor gene LYM1 go_component plasma membrane|GO:0005886|17644812|IDA go_component anchored to plasma membrane|GO:0046658|12805588|IDA go_process cell wall macromolecule catabolic process|GO:0016998||IEA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process cell wall macromolecule catabolic process|GO:0016998||ISS go_function molecular_function|GO:0003674||ND product lysm domain GPI-anchored protein 1 precursor note lysm domain GPI-anchored protein 1 precursor (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 660 Blast hits to 639 proteins in 131 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 1; Plants - 404; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G21880.2p transcript_id AT1G21880.2 protein_id AT1G21880.2p transcript_id AT1G21880.2
At1g21880	chr1:007680689	0.0	W/7680689-7681355,7681667-7681784,7681883-7682048	AT1G21880.1 CDS lysm domain GPI-anchored protein 1 precursor [TAIR10] CDS gene_syn LYM1, T26F17.10, T26F17_10, lysm domain GPI-anchored protein 1 precursor gene LYM1 go_component plasma membrane|GO:0005886|17644812|IDA go_component anchored to plasma membrane|GO:0046658|12805588|IDA go_process cell wall macromolecule catabolic process|GO:0016998||IEA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process cell wall macromolecule catabolic process|GO:0016998||ISS go_function molecular_function|GO:0003674||ND product lysm domain GPI-anchored protein 1 precursor note lysm domain GPI-anchored protein 1 precursor (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 655 Blast hits to 634 proteins in 130 species: Archae - 0; Bacteria - 234; Metazoa - 0; Fungi - 1; Plants - 403; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G21880.1p transcript_id AT1G21880.1 protein_id AT1G21880.1p transcript_id AT1G21880.1
At1g21890	chr1:007682808	0.0	C/7682808-7683030,7683564-7683715,7683807-7683965,7684061-7684328,7684803-7684919,7685069-7685131,7685394-7685581	AT1G21890.1 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn T26F17.11, T26F17_11 go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G08300.1); Has 3248 Blast hits to 3226 proteins in 574 species: Archae - 30; Bacteria - 1576; Metazoa - 4; Fungi - 0; Plants - 1228; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink). protein_id AT1G21890.1p transcript_id AT1G21890.1 protein_id AT1G21890.1p transcript_id AT1G21890.1
AT1G21890	chr1:007683464	0.0	C/7683464-7683715,7683807-7683965,7684061-7684328,7684803-7684919,7685069-7685131,7685394-7685581	AT1G21890.2 AT1G21890.2 CDS nodulin MtN21 /EamA-like transporter family protein
At1g21900	chr1:007691165	0.0	C/7691165-7691309,7691401-7691477,7691559-7691771,7692112-7692327	AT1G21900.1 CDS emp24/gp25L/p24 family/GOLD family protein [TAIR10] CDS gene_syn T26F17.12, T26F17_12 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_component membrane|GO:0016020||ISS go_process intracellular protein transport|GO:0006886||ISS go_function protein transmembrane transporter activity|GO:0008320||ISS product emp24/gp25L/p24 family/GOLD family protein note emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G09580.1); Has 1629 Blast hits to 1627 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 476; Plants - 235; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink). protein_id AT1G21900.1p transcript_id AT1G21900.1 protein_id AT1G21900.1p transcript_id AT1G21900.1
At1g21910	chr1:007696655	0.0	W/7696655-7697347	AT1G21910.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn T26F17.14, T26F17_14 function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. go_component chloroplast|GO:0009507||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Integrase-type DNA-binding superfamily protein note Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G77640.1); Has 6386 Blast hits to 5661 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 9; Plants - 5687; Viruses - 2; Other Eukaryotes - 589 (source: NCBI BLink). protein_id AT1G21910.1p transcript_id AT1G21910.1 protein_id AT1G21910.1p transcript_id AT1G21910.1
At1g21920	chr1:007704454	0.0	C/7704454-7704612,7704690-7704918,7705001-7705866	AT1G21920.1 CDS Histone H3 K4-specific methyltransferase SET7/9 family protein [TAIR10] CDS gene_syn T26F17.15, T26F17_15 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Histone H3 K4-specific methyltransferase SET7/9 family protein note Histone H3 K4-specific methyltransferase SET7/9 family protein; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: Histone H3 K4-specific methyltransferase SET7/9 family protein (TAIR:AT1G77660.1); Has 24355 Blast hits to 6247 proteins in 541 species: Archae - 0; Bacteria - 3533; Metazoa - 3700; Fungi - 215; Plants - 2241; Viruses - 0; Other Eukaryotes - 14666 (source: NCBI BLink). protein_id AT1G21920.1p transcript_id AT1G21920.1 protein_id AT1G21920.1p transcript_id AT1G21920.1
AT1G21920	chr1:007704675	0.0	C/7704675-7704918,7705001-7705866	AT1G21920.2 AT1G21920.2 CDS Histone H3 K4-specific methyltransferase SET7/9 family protein
At1g21925	chr1:007710423	0.0	C/7710423-7710725	AT1G21925.1 CDS Plant thionin family protein [TAIR10] CDS function Encodes a Plant thionin family protein go_component endomembrane system|GO:0012505||IEA product Plant thionin family protein note Plant thionin family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G21928.1); Has 75 Blast hits to 75 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21925.1p transcript_id AT1G21925.1 protein_id AT1G21925.1p transcript_id AT1G21925.1
At1g21928	chr1:007712211	0.0	C/7712211-7712513	AT1G21928.1 CDS Plant thionin family protein [TAIR10] CDS function Encodes a Plant thionin family protein go_component endomembrane system|GO:0012505||IEA product Plant thionin family protein note Plant thionin family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G21925.1); Has 75 Blast hits to 75 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21928.1p transcript_id AT1G21928.1 protein_id AT1G21928.1p transcript_id AT1G21928.1
At1g21930	chr1:007713466	0.0	W/7713466-7713515,7714052-7714298	AT1G21930.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T26F17.22, T26F17_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21930.1p transcript_id AT1G21930.1 protein_id AT1G21930.1p transcript_id AT1G21930.1
At1g21940	chr1:007715170	0.0	C/7715170-7715561,7716816-7716975	AT1G21940.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T26F17.16, T26F17_16 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21950.1); Has 19 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21940.1p transcript_id AT1G21940.1 protein_id AT1G21940.1p transcript_id AT1G21940.1
At1g21945	chr1:007717826	0.0	W/7717826-7722120	AT1G21945.1 [TAIR10] mRNA
At1g21945	chr1:007717826	0.0	W/7717826-7722120	AT1G21945 [TAIR10] TE pseudo gene_syn T26F17.17, T26F17_17 note Transposable element gene, copia-like retrotransposon family, has a 1.7e-243 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
At1g21950	chr1:007723471	0.0	C/7723471-7723863	AT1G21950.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T26F17.18, T26F17_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21940.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21950.1p transcript_id AT1G21950.1 protein_id AT1G21950.1p transcript_id AT1G21950.1
At1g21960	chr1:007725972	0.0	W/7725972-7726586	AT1G21960.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn T26F17.19, T26F17_19 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G18760.1); Has 8070 Blast hits to 8054 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 2404; Fungi - 520; Plants - 4111; Viruses - 10; Other Eukaryotes - 1025 (source: NCBI BLink). protein_id AT1G21960.1p transcript_id AT1G21960.1 protein_id AT1G21960.1p transcript_id AT1G21960.1
At1g21970	chr1:007727750	0.0	C/7727750-7728414,7729520-7729571	AT1G21970.1 CDS Histone superfamily protein [TAIR10] CDS gene_syn EMB 212, EMB212, EMBRYO DEFECTIVE 212, LEAFY COTYLEDON 1, LEC1, NF-YB9, NUCLEAR FACTOR Y, SUBUNIT B9, T26F17.20, T26F17_20 gene LEC1 function Transcriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain, a central B domain, and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central, B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells, suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant, have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants, indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter, the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis. go_component intracellular|GO:0005622||IEA go_component nucleus|GO:0005634||IEA go_process response to heat|GO:0009408|10759505|IMP go_process embryo development ending in seed dormancy|GO:0009793|9657152|IMP go_process somatic embryogenesis|GO:0010262|16034595|IMP go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA go_process positive regulation of fatty acid biosynthetic process|GO:0045723|18689444|IMP go_process positive regulation of transcription, DNA-dependent|GO:0045893|18689444|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657152|ISS go_function transcription activator activity|GO:0016563|19207209|IDA product Histone superfamily protein note LEAFY COTYLEDON 1 (LEC1); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, intracellular; EXPRESSED IN: seed, endosperm, cultured somatic embryo; EXPRESSED DURING: C globular stage, B proembryo stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B6 (TAIR:AT5G47670.2); Has 1463 Blast hits to 1463 proteins in 243 species: Archae - 2; Bacteria - 0; Metazoa - 492; Fungi - 348; Plants - 517; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). protein_id AT1G21970.1p transcript_id AT1G21970.1 protein_id AT1G21970.1p transcript_id AT1G21970.1
At1g21973	chr1:007730911	0.0	C/7730911-7731144	AT1G21973.1 [TAIR10] pseudogene
At1g21975	chr1:007732280	0.0	W/7732280-7732468	AT1G21975.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G21975.1p transcript_id AT1G21975.1 protein_id AT1G21975.1p transcript_id AT1G21975.1
At1g21980	chr1:007735053	0.0	W/7735053-7736149,7736244-7736408,7736577-7736742,7736957-7737067,7737148-7737341,7737431-7737561,7737647-7737740,7738009-7738309	AT1G21980.1 CDS phosphatidylinositol-4-phosphate 5-kinase 1 [TAIR10] CDS gene_syn ATPIP5K1, ATPIPK1, PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE, PIP5K1, phosphatidylinositol-4-phosphate 5-kinase 1 gene PIP5K1 function Type I phosphatidylinositol-4-phosphate 5-kinase. Preferentially phosphorylates PtdIns4P. Induced by water stress and abscisic acid in Arabidopsis thaliana. Expressed in procambial cells of leaves, flowers and roots. A N-terminal Membrane Occupation and Recognition Nexus (MORN)affects enzyme activity and distribution. go_component plasma membrane|GO:0005886|20427464|IDA go_process hyperosmotic response|GO:0006972|17197438|IDA go_function actin monomer binding|GO:0003785|17379598|IDA go_function phosphatidylinositol phosphate kinase activity|GO:0016307|11672432|IDA go_function phosphatidylinositol phosphate kinase activity|GO:0016307|20427464|IDA go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308|15949803|IDA go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS go_function actin filament binding|GO:0051015|17379598|IDA product phosphatidylinositol-4-phosphate 5-kinase 1 note phosphatidylinositol-4-phosphate 5-kinase 1 (PIP5K1); CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase 2 (TAIR:AT1G77740.1); Has 28574 Blast hits to 7954 proteins in 630 species: Archae - 0; Bacteria - 3995; Metazoa - 4425; Fungi - 453; Plants - 2526; Viruses - 0; Other Eukaryotes - 17175 (source: NCBI BLink). protein_id AT1G21980.1p transcript_id AT1G21980.1 protein_id AT1G21980.1p transcript_id AT1G21980.1
At1g21990	chr1:007740530	0.0	C/7740530-7740841,7740933-7741073,7741162-7742106	AT1G21990.1 CDS F-box/RNI-like/FBD-like domains-containing protein [TAIR10] CDS gene_syn F2E2.2, F2E2_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like/FBD-like domains-containing protein note F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 1523 Blast hits to 1486 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1523; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G21990.1p transcript_id AT1G21990.1 protein_id AT1G21990.1p transcript_id AT1G21990.1
At1g22000	chr1:007744189	0.0	W/7744189-7745145,7745232-7745369,7745442-7745744	AT1G22000.1 CDS LOW protein: F-box/FBD/LRR-like protein, putative [TAIR10] CDS gene_syn F2E2.4, F2E2_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product FBD, F-box and Leucine Rich Repeat domains containing protein note FBD, F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G26890.1); Has 13987 Blast hits to 10490 proteins in 830 species: Archae - 181; Bacteria - 1133; Metazoa - 6573; Fungi - 931; Plants - 2368; Viruses - 38; Other Eukaryotes - 2763 (source: NCBI BLink). protein_id AT1G22000.1p transcript_id AT1G22000.1 protein_id AT1G22000.1p transcript_id AT1G22000.1
At1g22010	chr1:007749571	0.0	W/7749571-7750062	AT1G22010.1 CDS hypothetical protein [TAIR10] CDS gene_syn F2E2.5, F2E2_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22010.1p transcript_id AT1G22010.1 protein_id AT1G22010.1p transcript_id AT1G22010.1
At1g22015	chr1:007751225	0.0	C/7751225-7751382,7751495-7751604,7751711-7751836,7751932-7752019,7752115-7752235,7752310-7752382,7752459-7752522,7752615-7752814,7752910-7752968,7753085-7753184,7753328-7753425	AT1G22015.1 CDS Galactosyltransferase family protein [TAIR10] CDS gene_syn DD46 gene DD46 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process protein amino acid glycosylation|GO:0006486||IEA go_function galactosyltransferase activity|GO:0008378||IEA go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS product Galactosyltransferase family protein note DD46; FUNCTIONS IN: transferase activity, transferring hexosyl groups, galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G77810.2); Has 1691 Blast hits to 1677 proteins in 112 species: Archae - 0; Bacteria - 2; Metazoa - 1078; Fungi - 8; Plants - 564; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). protein_id AT1G22015.1p transcript_id AT1G22015.1 protein_id AT1G22015.1p transcript_id AT1G22015.1
At1g22020	chr1:007754599	0.0	W/7754599-7755666,7755820-7756225,7756646-7756747,7756864-7757087	AT1G22020.1 CDS serine hydroxymethyltransferase 6 [TAIR10] CDS gene_syn F2E2.7, F2E2_7, SHM6, serine hydroxymethyltransferase 6 gene SHM6 function Encodes a putative serine hydroxymethyltransferase. go_process glycine metabolic process|GO:0006544||IEA go_process L-serine metabolic process|GO:0006563||IEA go_function catalytic activity|GO:0003824||IEA go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA go_function pyridoxal phosphate binding|GO:0030170||IEA go_component cellular_component|GO:0005575||ND go_process glycine metabolic process|GO:0006544||ISS go_process L-serine metabolic process|GO:0006563||ISS go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS product serine hydroxymethyltransferase 6 note serine hydroxymethyltransferase 6 (SHM6); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 7 (TAIR:AT1G36370.1); Has 11545 Blast hits to 11518 proteins in 2846 species: Archae - 258; Bacteria - 6402; Metazoa - 340; Fungi - 287; Plants - 348; Viruses - 6; Other Eukaryotes - 3904 (source: NCBI BLink). protein_id AT1G22020.1p transcript_id AT1G22020.1 protein_id AT1G22020.1p transcript_id AT1G22020.1
AT1G22020	chr1:007754599	0.0	W/7754599-7755666,7755820-7756225,7756646-7756747,7756864-7757087	AT1G22020.2 AT1G22020.2 CDS serine hydroxymethyltransferase 6
At1g22030	chr1:007759337	0.0	C/7759337-7759987,7760065-7760415	AT1G22030.1 CDS BPS1-like protein [TAIR10] CDS gene_syn F2E2.8, F2E2_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22030.1p transcript_id AT1G22030.1 protein_id AT1G22030.1p transcript_id AT1G22030.1
At1g22040	chr1:007768370	0.0	W/7768370-7769797	AT1G22040.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F2E2.11, F2E2_11 go_component chloroplast|GO:0009507||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G55270.1); Has 10813 Blast hits to 5578 proteins in 328 species: Archae - 18; Bacteria - 659; Metazoa - 8206; Fungi - 35; Plants - 1449; Viruses - 72; Other Eukaryotes - 374 (source: NCBI BLink). protein_id AT1G22040.1p transcript_id AT1G22040.1 protein_id AT1G22040.1p transcript_id AT1G22040.1
At1g22050	chr1:007771897	0.0	W/7771897-7772029,7772485-7772655,7772788-7772843	AT1G22050.1 CDS membrane-anchored ubiquitin-fold protein 6 precursor [TAIR10] CDS gene_syn F2E2.12, F2E2_12, MUB6, membrane-anchored ubiquitin-fold protein 6 precursor gene MUB6 go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product membrane-anchored ubiquitin-fold protein 6 precursor note membrane-anchored ubiquitin-fold protein 6 precursor (MUB6); CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 5 precursor (TAIR:AT1G77870.1); Has 161 Blast hits to 161 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22050.1p transcript_id AT1G22050.1 protein_id AT1G22050.1p transcript_id AT1G22050.1
At1g22060	chr1:007773373	0.0	C/7773373-7773649,7773743-7773885,7773967-7774068,7774241-7774396,7774704-7779458,7779672-7779836,7779947-7780069,7780155-7780355,7780509-7780586	AT1G22060.1 CDS sporulation-specific protein [TAIR10] CDS gene_syn F2E2.13, F2E2_13 go_component vacuole|GO:0005773|15539469|IDA product unknown protein note LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). protein_id AT1G22060.1p transcript_id AT1G22060.1 protein_id AT1G22060.1p transcript_id AT1G22060.1
AT1G22060	chr1:007773373	0.0	C/7773373-7773649,7773743-7773885,7773967-7774068,7774241-7774396,7774704-7779458,7779672-7779836,7779947-7780069,7780155-7780355,7780509-7780586	AT1G22060.2 AT1G22060.2 CDS sporulation-specific protein
At1g22065	chr1:007785889	0.0	W/7785889-7786107	AT1G22065.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22065.1p transcript_id AT1G22065.1 protein_id AT1G22065.1p transcript_id AT1G22065.1
At1g22067	chr1:007787391	0.0	W/7787391-7787525	AT1G22067.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22067.1p transcript_id AT1G22067.1 protein_id AT1G22067.1p transcript_id AT1G22067.1
At1g22070	chr1:007789651	0.0	W/7789651-7789656,7789989-7790189,7790276-7790362,7790498-7790557,7790633-7790710,7790797-7790860,7790961-7791232,7791309-7791542,7791669-7791821	AT1G22070.1 CDS TGA1A-related gene 3 [TAIR10] CDS gene_syn F2E2.14, F2E2_14, TGA1A-related gene 3, TGA3, TRANSCRIPTION FACTOR TGA3 gene TGA3 function Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|10659709|IPI go_process defense response to bacterium|GO:0042742|17369431|IMP go_function DNA binding|GO:0003677|8003690|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11906833|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|8003690|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function protein binding|GO:0005515|10659709|IPI go_function calmodulin binding|GO:0005516|11782485|TAS go_function calmodulin binding|GO:0005516|8672891|IDA product TGA1A-related gene 3 note TGA1A-related gene 3 (TGA3); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT1G77920.1); Has 1024 Blast hits to 1024 proteins in 132 species: Archae - 0; Bacteria - 78; Metazoa - 5; Fungi - 45; Plants - 790; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). protein_id AT1G22070.1p transcript_id AT1G22070.1 protein_id AT1G22070.1p transcript_id AT1G22070.1
At1g22080	chr1:007792404	0.0	C/7792404-7792412,7792628-7792715,7792790-7792977,7793225-7793312,7793389-7793735,7793811-7794089	AT1G22080.1 CDS Cysteine proteinases superfamily protein [TAIR10] CDS gene_syn F2E2.15, F2E2_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Cysteine proteinases superfamily protein note Cysteine proteinases superfamily protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22080.1p transcript_id AT1G22080.1 protein_id AT1G22080.1p transcript_id AT1G22080.1
At1g22080	chr1:007792404	0.0	C/7792404-7792412,7792628-7792715,7792790-7792977,7793225-7793312,7793389-7793735,7793811-7794089	AT1G22080.2 CDS Cysteine proteinases superfamily protein [TAIR10] CDS gene_syn F2E2.15, F2E2_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Cysteine proteinases superfamily protein note Cysteine proteinases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22080.2p transcript_id AT1G22080.2 protein_id AT1G22080.2p transcript_id AT1G22080.2
At1g22090	chr1:007795721	0.0	W/7795721-7795774,7795883-7796032,7796133-7796319,7796406-7796527,7796677-7796763,7796863-7797252	AT1G22090.1 CDS UPF0725 EMB2204-like protein (DUF626) [TAIR10] CDS gene_syn F2E2.16, F2E2_16, emb2204, embryo defective 2204 gene emb2204 go_component cellular_component|GO:0005575||ND go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note embryo defective 2204 (emb2204); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G02770.1); Has 202 Blast hits to 201 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22090.1p transcript_id AT1G22090.1 protein_id AT1G22090.1p transcript_id AT1G22090.1
At1g22100	chr1:007798023	0.0	C/7798023-7798151,7798221-7798805,7798886-7798996,7799085-7799125,7799315-7799462,7799594-7799800,7799926-7800030	AT1G22100.1 CDS Inositol-pentakisphosphate 2-kinase family protein [TAIR10] CDS gene_syn F2E2.17, F2E2_17 go_function ATP binding|GO:0005524||IEA go_function inositol pentakisphosphate 2-kinase activity|GO:0035299||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Inositol-pentakisphosphate 2-kinase family protein note Inositol-pentakisphosphate 2-kinase family protein; FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase, metazoa (InterPro:IPR018009), Inositol-pentakisphosphate 2-kinase (InterPro:IPR009286); BEST Arabidopsis thaliana protein match is: Inositol-pentakisphosphate 2-kinase family protein (TAIR:AT1G59312.1); Has 235 Blast hits to 231 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 18; Plants - 92; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). protein_id AT1G22100.1p transcript_id AT1G22100.1 protein_id AT1G22100.1p transcript_id AT1G22100.1
At1g22110	chr1:007801625	0.0	C/7801625-7802473	AT1G22110.1 CDS structural constituent of ribosome [TAIR10] CDS gene_syn F2E2.18, F2E2_18 go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_component chloroplast|GO:0009507||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA product structural constituent of ribosome note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410), Ribosomal protein L30e (InterPro:IPR000231); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT1G77932.1); Has 4674 Blast hits to 1855 proteins in 271 species: Archae - 11; Bacteria - 643; Metazoa - 1218; Fungi - 438; Plants - 374; Viruses - 105; Other Eukaryotes - 1885 (source: NCBI BLink). protein_id AT1G22110.1p transcript_id AT1G22110.1 protein_id AT1G22110.1p transcript_id AT1G22110.1
AT1G22110	chr1:007801625	0.0	C/7801625-7802473	AT1G22110.2 AT1G22110.2 CDS structural constituent of ribosome
AT1G22110	chr1:007801625	0.0	C/7801625-7802473	AT1G22110.3 AT1G22110.3 CDS structural constituent of ribosome
At1g22120	chr1:007806655	0.0	C/7806655-7806730,7806838-7806944,7807033-7807101,7807313-7807427,7807606-7807707,7807799-7807906,7808021-7808089,7808178-7808300,7808391-7808488,7808579-7808776,7808875-7809132,7809567-7809632	AT1G22120.1 CDS hypothetical protein [TAIR10] CDS gene_syn F2E2.19, F2E2_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22120.1p transcript_id AT1G22120.1 protein_id AT1G22120.1p transcript_id AT1G22120.1
At1g22130	chr1:007812387	0.0	C/7812387-7812524,7812598-7812763,7812883-7813143,7813231-7813292,7813372-7813399,7813535-7813596,7813680-7813698,7813797-7813829,7813922-7813975,7814075-7814259	AT1G22130.1 CDS AGAMOUS-like 104 [TAIR10] CDS gene_syn AGAMOUS-like 104, AGL104, F2E2.20, F2E2_20 gene AGL104 function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL104 is expressed in pollen.It forms heterodimers with other MICK family members (AGL65 and AGL30). Involved in late stages of pollen development and pollen tube growth. go_component nucleus|GO:0005634||IEA go_process pollen development|GO:0009555|19211705|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS product AGAMOUS-like 104 note AGAMOUS-like 104 (AGL104); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 66 (TAIR:AT1G77980.1); Has 6115 Blast hits to 6115 proteins in 750 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 304; Plants - 5113; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). protein_id AT1G22130.1p transcript_id AT1G22130.1 protein_id AT1G22130.1p transcript_id AT1G22130.1
At1g22140	chr1:007815083	0.0	C/7815083-7815129,7815229-7815292,7815494-7815577	AT1G22140.2 CDS zinc finger CCCH domain protein [TAIR10] CDS gene_syn F2E2.21, F2E2_21 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22140.2p transcript_id AT1G22140.2 protein_id AT1G22140.2p transcript_id AT1G22140.2
At1g22140	chr1:007815158	0.0	C/7815158-7815292,7815494-7815577	AT1G22140.1 CDS zinc finger CCCH domain protein [TAIR10] CDS gene_syn F2E2.21, F2E2_21 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G22140.1p transcript_id AT1G22140.1 protein_id AT1G22140.1p transcript_id AT1G22140.1
AT1G22140	chr1:007815158	0.0	C/7815158-7815292,7815494-7815577	AT1G22140.3 AT1G22140.3 CDS zinc finger CCCH domain protein
At1g22150	chr1:007818361	0.0	W/7818361-7818690,7818773-7818821,7818941-7819148,7819244-7819418,7819500-7819565,7819645-7819758,7819855-7819971,7820065-7820478,7820566-7820756,7820858-7820943,7821035-7821111,7821201-7821344	AT1G22150.1 CDS sulfate transporter 1;3 [TAIR10] CDS gene_syn F2E2.22, F2E2_22, SULFATE TANSPORTER SULTR1;3, SULTR1;3, sulfate transporter 1;3 gene SULTR1;3 function sulfate transporter Sultr1;3 go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process sulfate transport|GO:0008272||IEA go_process transmembrane transport|GO:0055085||IEA go_function sulfate transmembrane transporter activity|GO:0015116||ISS product sulfate transporter 1;3 note sulfate transporter 1;3 (SULTR1;3); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: petal, leaf whorl, sperm cell, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: sulfate transporter 1;2 (TAIR:AT1G78000.2); Has 9966 Blast hits to 9871 proteins in 1873 species: Archae - 35; Bacteria - 6045; Metazoa - 1156; Fungi - 451; Plants - 559; Viruses - 0; Other Eukaryotes - 1720 (source: NCBI BLink). protein_id AT1G22150.1p transcript_id AT1G22150.1 protein_id AT1G22150.1p transcript_id AT1G22150.1
AT1G22150	chr1:007818361	0.0	W/7818361-7818690,7818773-7818821,7818941-7819148,7819244-7819418,7819500-7819565,7819645-7819758,7819855-7819971,7820065-7820478,7820566-7820756,7820858-7820943,7821035-7821111,7821201-7821344	AT1G22150.3 AT1G22150.3 CDS sulfate transporter 1;3
AT1G22150	chr1:007818361	0.0	W/7818361-7818690,7818773-7818821,7818941-7819148,7819244-7819418,7819500-7819565,7819645-7819758,7819855-7819971,7820065-7820478,7820566-7820756,7820858-7820943,7821035-7821111,7821201-7821344	AT1G22150.4 AT1G22150.4 CDS sulfate transporter 1;3
AT1G22150	chr1:007818361	0.0	W/7818361-7818690,7818773-7818821,7818941-7819148,7819244-7819418,7819500-7819565,7819645-7819758,7819855-7819971,7820065-7820478,7820566-7820756,7820858-7820975	AT1G22150.2 AT1G22150.2 CDS sulfate transporter 1;3
At1g22160	chr1:007823238	0.0	W/7823238-7823533,7823627-7823774	AT1G22160.1 CDS senescence-associated family protein (DUF581) [TAIR10] CDS gene_syn F2E2.23, F2E2_23 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF581) note Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G78020.1); Has 511 Blast hits to 511 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 511; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22160.1p transcript_id AT1G22160.1 protein_id AT1G22160.1p transcript_id AT1G22160.1
At1g22170	chr1:007826603	0.0	W/7826603-7826828,7826923-7827265,7827358-7827514,7827593-7827694,7827793-7827912,7827999-7828055	AT1G22170.1 CDS Phosphoglycerate mutase family protein [TAIR10] CDS gene_syn F16L1.10, F16L1_10 go_component chloroplast|GO:0009507||IEA go_process glycolysis|GO:0006096||IEA go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA go_process metabolic process|GO:0008152||ISS go_function catalytic activity|GO:0003824||ISS product Phosphoglycerate mutase family protein note Phosphoglycerate mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, catalytic activity; INVOLVED IN: glycolysis, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345), Phosphoglycerate mutase 1 (InterPro:IPR005952); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase (TAIR:AT1G78050.1); Has 12525 Blast hits to 12398 proteins in 2288 species: Archae - 62; Bacteria - 8805; Metazoa - 605; Fungi - 308; Plants - 169; Viruses - 0; Other Eukaryotes - 2576 (source: NCBI BLink). protein_id AT1G22170.1p transcript_id AT1G22170.1 protein_id AT1G22170.1p transcript_id AT1G22170.1
AT1G22170	chr1:007826603	0.0	W/7826603-7826828,7826923-7827265,7827358-7827514,7827593-7827694,7827793-7827912,7827999-7828055	AT1G22170.2 AT1G22170.2 CDS Phosphoglycerate mutase family protein
At1g22180	chr1:007828434	0.0	C/7828434-7828784,7828867-7829109,7829191-7829289,7829380-7829436	AT1G22180.1 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn F16L1.9, F16L1_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G08690.1); Has 2252 Blast hits to 2246 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 862; Fungi - 537; Plants - 585; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink). protein_id AT1G22180.1p transcript_id AT1G22180.1 protein_id AT1G22180.1p transcript_id AT1G22180.1
At1g22180	chr1:007828434	0.0	C/7828434-7828784,7828867-7829109,7829191-7829289,7829380-7829436	AT1G22180.3 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn F16L1.9, F16L1_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G08690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22180.3p transcript_id AT1G22180.3 protein_id AT1G22180.3p transcript_id AT1G22180.3
At1g22180	chr1:007828434	0.0	C/7828434-7828784,7828867-7829109,7829191-7829289,7829380-7829556,7829671-7829745	AT1G22180.2 CDS Sec14p-like phosphatidylinositol transfer family protein [TAIR10] CDS gene_syn F16L1.9, F16L1_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Sec14p-like phosphatidylinositol transfer family protein note Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G08690.1); Has 2763 Blast hits to 2754 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 989; Fungi - 606; Plants - 846; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink). protein_id AT1G22180.2p transcript_id AT1G22180.2 protein_id AT1G22180.2p transcript_id AT1G22180.2
AT1G22180	chr1:007828434	0.0	C/7828434-7828784,7828867-7829109,7829191-7829289,7829380-7829556,7829671-7829745	AT1G22180.4 AT1G22180.4 CDS Sec14p-like phosphatidylinositol transfer family protein
At1g22190	chr1:007836245	0.0	W/7836245-7837030	AT1G22190.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn F16L1.8, F16L1_8 go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634|9192694|IC go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677|9192694|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9192694|ISS product Integrase-type DNA-binding superfamily protein note Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 5992 Blast hits to 5760 proteins in 260 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5935; Viruses - 12; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G22190.1p transcript_id AT1G22190.1 protein_id AT1G22190.1p transcript_id AT1G22190.1
At1g22200	chr1:007837857	0.0	C/7837857-7837948,7838048-7838114,7838212-7838304,7838393-7838446,7838692-7838743,7838833-7838900,7838986-7839165,7839351-7839443,7839633-7839713,7839863-7839943,7840058-7840141,7840218-7840291,7840461-7840602	AT1G22200.1 CDS Endoplasmic reticulum vesicle transporter protein [TAIR10] CDS gene_syn F16L1.7, F16L1_7 go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Endoplasmic reticulum vesicle transporter protein note Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G36050.2); Has 1257 Blast hits to 1087 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 432; Fungi - 284; Plants - 278; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). protein_id AT1G22200.1p transcript_id AT1G22200.1 protein_id AT1G22200.1p transcript_id AT1G22200.1
At1g22200	chr1:007838104	0.0	C/7838104-7838114,7838208-7838304,7838393-7838446,7838692-7838743,7838833-7838900,7838986-7839165,7839351-7839443,7839633-7839713,7839863-7839943,7840058-7840141,7840218-7840291,7840461-7840602	AT1G22200.2 CDS Endoplasmic reticulum vesicle transporter protein [TAIR10] CDS gene_syn F16L1.7, F16L1_7 go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Endoplasmic reticulum vesicle transporter protein note Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G36050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22200.2p transcript_id AT1G22200.2 protein_id AT1G22200.2p transcript_id AT1G22200.2
At1g22210	chr1:007841518	0.0	W/7841518-7841652,7841919-7842059,7842198-7842269,7842373-7842456,7842538-7842597,7842703-7842804,7842972-7843049,7843209-7843278,7843387-7843457,7843558-7843650,7843756-7843812	AT1G22210.1 CDS Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [TAIR10] CDS gene_syn F16L1.6, F16L1_6 go_process trehalose biosynthetic process|GO:0005992||IEA go_process metabolic process|GO:0008152||IEA go_function catalytic activity|GO:0003824||IEA go_component cellular_component|GO:0005575||ND go_process trehalose biosynthetic process|GO:0005992||ISS go_function trehalose-phosphatase activity|GO:0004805||ISS product Haloacid dehalogenase-like hydrolase (HAD) superfamily protein note Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase (TAIR:AT1G78090.1); Has 2333 Blast hits to 2328 proteins in 832 species: Archae - 41; Bacteria - 1319; Metazoa - 218; Fungi - 151; Plants - 473; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink). protein_id AT1G22210.1p transcript_id AT1G22210.1 protein_id AT1G22210.1p transcript_id AT1G22210.1
At1g22220	chr1:007846694	0.0	W/7846694-7847638	AT1G22220.1 CDS F-box family protein [TAIR10] CDS gene_syn F16L1.5, F16L1_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G78100.1); Has 155 Blast hits to 154 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22220.1p transcript_id AT1G22220.1 protein_id AT1G22220.1p transcript_id AT1G22220.1
At1g22230	chr1:007850093	0.0	W/7850093-7851037	AT1G22230.1 CDS nucleolar GTP-binding protein, putative [TAIR10] CDS gene_syn F16L1.4, F16L1_4 go_component chloroplast|GO:0009507||IEA product unknown protein note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78110.1); Has 2358 Blast hits to 1759 proteins in 159 species: Archae - 2; Bacteria - 36; Metazoa - 1046; Fungi - 203; Plants - 157; Viruses - 72; Other Eukaryotes - 842 (source: NCBI BLink). protein_id AT1G22230.1p transcript_id AT1G22230.1 protein_id AT1G22230.1p transcript_id AT1G22230.1
At1g22240	chr1:007853084	0.0	W/7853084-7853943,7854027-7854189,7854270-7854433,7854513-7854768,7854859-7854963	AT1G22240.1 CDS pumilio 8 [TAIR10] CDS gene_syn APUM8, F16L1.3, F16L1_3, PUM8, pumilio 8 gene PUM8 function Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. go_function RNA binding|GO:0003723||IEA go_function binding|GO:0005488||IEA go_component cytoplasm|GO:0005737|20214804|IDA go_function RNA binding|GO:0003723||ISS product pumilio 8 note pumilio 8 (PUM8); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1); Has 2896 Blast hits to 1722 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 700; Fungi - 827; Plants - 762; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink). protein_id AT1G22240.1p transcript_id AT1G22240.1 protein_id AT1G22240.1p transcript_id AT1G22240.1
At1g22250	chr1:007858961	0.0	W/7858961-7859176,7859262-7859648	AT1G22250.1 CDS hypothetical protein [TAIR10] CDS gene_syn F16L1.2, F16L1_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22250.1p transcript_id AT1G22250.1 protein_id AT1G22250.1p transcript_id AT1G22250.1
AT1G22260	chr1:007860160	0.0	C/7860160-7860261,7860659-7860718,7860792-7860875,7860957-7861070,7861161-7861247,7861402-7861488,7861558-7861668,7861753-7861860,7862274-7862384,7862457-7862525,7862649-7862777,7862862-7863110,7863190-7863866,7864051-7864149,7864231-7864356,7864449-7864635	AT1G22260.3 AT1G22260.3 CDS Myosin heavy chain-related protein
At1g22260	chr1:007860160	0.0	C/7860160-7860261,7860659-7860718,7860792-7860875,7860957-7861070,7861161-7861247,7861402-7861488,7861558-7861668,7861753-7861860,7862274-7862384,7862457-7862525,7862649-7862777,7862862-7863110,7863190-7863866,7864051-7864149,7864231-7864356,7864449-7864656,7864867-7864916,7864998-7865142	AT1G22260.1 CDS Myosin heavy chain-related protein [TAIR10] CDS gene_syn T16E15.12, T16E15_12, ZYP1, ZYP1a gene ZYP1a function One of two nearly identical proteins (ZYP1b) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility. go_component synaptonemal complex|GO:0000795|16230536|IDA go_process synapsis|GO:0007129|16230536|IMP go_process reciprocal meiotic recombination|GO:0007131|16230536|IMP product Myosin heavy chain-related protein note ZYP1a; BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G22275.1); Has 173955 Blast hits to 88084 proteins in 3391 species: Archae - 2245; Bacteria - 35093; Metazoa - 72717; Fungi - 13338; Plants - 8123; Viruses - 835; Other Eukaryotes - 41604 (source: NCBI BLink). protein_id AT1G22260.1p transcript_id AT1G22260.1 protein_id AT1G22260.1p transcript_id AT1G22260.1
AT1G22260	chr1:007860696	0.0	C/7860696-7860875,7860957-7861070,7861161-7861247,7861402-7861488,7861558-7861668,7861753-7861860,7862274-7862384,7862457-7862525,7862649-7862777,7862862-7863110,7863190-7863866,7864051-7864149,7864231-7864356,7864449-7864656,7864867-7864916,7864998-7865142	AT1G22260.2 AT1G22260.2 CDS Myosin heavy chain-related protein
At1g22270	chr1:007865548	0.0	W/7865548-7865922	AT1G22270.1 CDS Trm112p-like protein [TAIR10] CDS gene_syn T16E15.11, T16E15_11 function Encodes SMO2 (Small Organ 2). Modulates progression of cell division during organ growth. go_component cellular_component|GO:0005575||ND go_process organ growth|GO:0035265|19929876|IMP go_process regulation of cell proliferation|GO:0042127|19929876|IMP go_process regulation of cell cycle|GO:0051726|19929876|IMP go_function molecular_function|GO:0003674||ND product Trm112p-like protein note Trm112p-like protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); BEST Arabidopsis thaliana protein match is: Trm112p-like protein (TAIR:AT1G78190.1); Has 419 Blast hits to 419 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 151; Fungi - 129; Plants - 62; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). protein_id AT1G22270.1p transcript_id AT1G22270.1 protein_id AT1G22270.1p transcript_id AT1G22270.1
At1g22275	chr1:007867245	0.0	W/7867245-7867389,7867471-7867520,7867767-7867974,7868067-7868192,7868275-7868373,7868578-7869254,7869334-7869582,7869654-7869782,7869906-7869974,7870048-7870158,7870459-7870566,7870651-7870761,7870830-7870916,7871062-7871133,7871250-7871330,7871403-7871486,7871553-7871615,7871965-7872066	AT1G22275.1 CDS Myosin heavy chain-related protein [TAIR10] CDS gene_syn ZYP1, ZYP1b gene ZYP1b function One of two nearly identical proteins (ZYP1a) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility. go_component synaptonemal complex|GO:0000795|16230536|IDA go_process synapsis|GO:0007129|16230536|IMP go_process reciprocal meiotic recombination|GO:0007131|16230536|IMP go_function protein binding|GO:0005515|19452453|IPI product Myosin heavy chain-related protein note ZYP1b; BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G22260.1); Has 145563 Blast hits to 75800 proteins in 3137 species: Archae - 2001; Bacteria - 27401; Metazoa - 61286; Fungi - 11195; Plants - 7048; Viruses - 666; Other Eukaryotes - 35966 (source: NCBI BLink). protein_id AT1G22275.1p transcript_id AT1G22275.1 protein_id AT1G22275.1p transcript_id AT1G22275.1
AT1G22275	chr1:007867245	0.0	W/7867245-7867389,7867471-7867520,7867767-7867974,7868067-7868192,7868275-7868373,7868578-7869254,7869334-7869582,7869654-7869782,7869906-7869974,7870048-7870158,7870459-7870566,7870651-7870761,7870830-7870916,7871062-7871133,7871250-7871330,7871403-7871531	AT1G22275.2 AT1G22275.2 CDS Myosin heavy chain-related protein
AT1G22275	chr1:007867245	0.0	W/7867245-7867389,7867471-7867520,7867767-7867974,7868067-7868192,7868275-7868373,7868578-7869254,7869334-7869582,7869654-7869782,7869906-7869974,7870048-7870158,7870459-7870590	AT1G22275.3 AT1G22275.3 CDS Myosin heavy chain-related protein
At1g22280	chr1:007874236	0.0	W/7874236-7874271,7874403-7874642,7874731-7875007,7875101-7875255,7875359-7875496	AT1G22280.1 CDS phytochrome-associated protein phosphatase type 2C [TAIR10] CDS gene_syn PAPP2C, T16E15.10, T16E15_10, phytochrome-associated protein phosphatase type 2C gene PAPP2C function Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C). PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB. Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus. go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component nucleus|GO:0005634|18433157|IDA go_component nucleus|GO:0005634|18564962|IDA go_component plasma membrane|GO:0005886|16618929|IDA go_process protein amino acid dephosphorylation|GO:0006470|18564962|IDA go_process red light signaling pathway|GO:0010161|18564962|IEP go_function phosphoprotein phosphatase activity|GO:0004721|18564962|IDA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product phytochrome-associated protein phosphatase type 2C note phytochrome-associated protein phosphatase type 2C (PAPP2C); FUNCTIONS IN: protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, red light signaling pathway; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G34750.1); Has 8206 Blast hits to 8190 proteins in 1131 species: Archae - 16; Bacteria - 1989; Metazoa - 1496; Fungi - 741; Plants - 2625; Viruses - 11; Other Eukaryotes - 1328 (source: NCBI BLink). protein_id AT1G22280.1p transcript_id AT1G22280.1 protein_id AT1G22280.1p transcript_id AT1G22280.1
At1g22280	chr1:007874236	0.0	W/7874236-7874271,7874403-7874642,7874731-7875054	AT1G22280.2 CDS phytochrome-associated protein phosphatase type 2C [TAIR10] CDS gene_syn PAPP2C, T16E15.10, T16E15_10, phytochrome-associated protein phosphatase type 2C gene PAPP2C function Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C). PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB. Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus. go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component nucleus|GO:0005634|18433157|IDA go_component nucleus|GO:0005634|18564962|IDA go_component plasma membrane|GO:0005886|16618929|IDA go_process protein amino acid dephosphorylation|GO:0006470|18564962|IDA go_process red light signaling pathway|GO:0010161|18564962|IEP go_function phosphoprotein phosphatase activity|GO:0004721|18564962|IDA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product phytochrome-associated protein phosphatase type 2C note phytochrome-associated protein phosphatase type 2C; FUNCTIONS IN: protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, red light signaling pathway; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G34750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22280.2p transcript_id AT1G22280.2 protein_id AT1G22280.2p transcript_id AT1G22280.2
At1g22280	chr1:007874236	0.0	W/7874236-7874271,7874403-7874660,7874731-7875007,7875101-7875255,7875359-7875496	AT1G22280.3 CDS phytochrome-associated protein phosphatase type 2C [TAIR10] CDS gene_syn PAPP2C, T16E15.10, T16E15_10, phytochrome-associated protein phosphatase type 2C gene PAPP2C function Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C). PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB. Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus. go_component nucleus|GO:0005634|18433157|IDA go_component nucleus|GO:0005634|18564962|IDA go_component plasma membrane|GO:0005886|16618929|IDA go_process protein amino acid dephosphorylation|GO:0006470|18564962|IDA go_process red light signaling pathway|GO:0010161|18564962|IEP go_function phosphoprotein phosphatase activity|GO:0004721|18564962|IDA go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product phytochrome-associated protein phosphatase type 2C note phytochrome-associated protein phosphatase type 2C (PAPP2C); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G34750.1). protein_id AT1G22280.3p transcript_id AT1G22280.3 protein_id AT1G22280.3p transcript_id AT1G22280.3
At1g22290	chr1:007876830	0.0	C/7876830-7876897,7876974-7877026,7877123-7877199,7877307-7877373,7877453-7877771,7877849-7877915	AT1G22290.2 CDS 14-3-3 family protein [TAIR10] CDS gene_syn T16E15.9, T16E15_9 go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS product 14-3-3 family protein note 14-3-3 family protein; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 10 (TAIR:AT1G22300.2). protein_id AT1G22290.2p transcript_id AT1G22290.2 protein_id AT1G22290.2p transcript_id AT1G22290.2
At1g22290	chr1:007876966	0.0	C/7876966-7877026,7877123-7877199,7877307-7877373,7877453-7877771,7877849-7877915	AT1G22290.1 CDS 14-3-3 family protein [TAIR10] CDS gene_syn T16E15.9, T16E15_9 go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS product 14-3-3 family protein note 14-3-3 family protein; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 10 (TAIR:AT1G22300.2); Has 2461 Blast hits to 2459 proteins in 362 species: Archae - 2; Bacteria - 2; Metazoa - 1174; Fungi - 281; Plants - 702; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink). protein_id AT1G22290.1p transcript_id AT1G22290.1 protein_id AT1G22290.1p transcript_id AT1G22290.1
At1g22300	chr1:007879146	0.0	C/7879146-7879151,7879250-7879287,7879636-7879784,7879866-7879975,7880083-7880170,7880378-7880684,7881037-7881103	AT1G22300.1 CDS general regulatory factor 10 [TAIR10] CDS gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, 14-3-3EPSILON, GF14 EPSILON, GRF10, general regulatory factor 10 gene GRF10 function Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 go_component mitochondrion|GO:0005739|17137349|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_function ATP binding|GO:0005524|17137349|IDA go_component cytoplasm|GO:0005737||IDA go_component plasma membrane|GO:0005886||IDA go_component chloroplast stroma|GO:0009570|9276953|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|17681130|IPI go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS product general regulatory factor 10 note general regulatory factor 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 11 (TAIR:AT1G34760.2); Has 2709 Blast hits to 2701 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 330; Plants - 762; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink). protein_id AT1G22300.1p transcript_id AT1G22300.1 protein_id AT1G22300.1p transcript_id AT1G22300.1
At1g22300	chr1:007879244	0.0	C/7879244-7879287,7879636-7879784,7879866-7879975,7880083-7880170,7880378-7880684,7881037-7881103	AT1G22300.2 CDS general regulatory factor 10 [TAIR10] CDS gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, 14-3-3EPSILON, GF14 EPSILON, GRF10, general regulatory factor 10 gene GRF10 function Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 go_component mitochondrion|GO:0005739|17137349|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_function ATP binding|GO:0005524|17137349|IDA go_component cytoplasm|GO:0005737||IDA go_component plasma membrane|GO:0005886||IDA go_component chloroplast stroma|GO:0009570|9276953|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|17681130|IPI go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS product general regulatory factor 10 note general regulatory factor 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 11 (TAIR:AT1G34760.1); Has 2707 Blast hits to 2699 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 330; Plants - 762; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink). protein_id AT1G22300.2p transcript_id AT1G22300.2 protein_id AT1G22300.2p transcript_id AT1G22300.2
At1g22300	chr1:007879601	0.0	C/7879601-7879784,7879866-7879975,7880083-7880170,7880378-7880684,7881037-7881103	AT1G22300.3 CDS general regulatory factor 10 [TAIR10] CDS gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, 14-3-3EPSILON, GF14 EPSILON, GRF10, general regulatory factor 10 gene GRF10 function Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 go_component mitochondrion|GO:0005739|17137349|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_function ATP binding|GO:0005524|17137349|IDA go_component cytoplasm|GO:0005737||IDA go_component plasma membrane|GO:0005886||IDA go_component chloroplast stroma|GO:0009570|9276953|IDA go_process brassinosteroid mediated signaling pathway|GO:0009742|17681130|IPI go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS product general regulatory factor 10 note general regulatory factor 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 11 (TAIR:AT1G34760.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22300.3p transcript_id AT1G22300.3 protein_id AT1G22300.3p transcript_id AT1G22300.3
At1g22310	chr1:007881714	0.0	C/7881714-7882179,7882536-7883125,7883197-7883418	AT1G22310.1 CDS methyl-CPG-binding domain 8 [TAIR10] CDS gene_syn ATMBD8, MBD8, T16E15.7, T16E15_7, methyl-CPG-binding domain 8 gene MBD8 function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. go_component nucleus|GO:0005634||IEA go_process biological_process|GO:0008150||ND go_function methyl-CpG binding|GO:0008327|12787239|ISS product methyl-CPG-binding domain 8 note methyl-CPG-binding domain 8 (MBD8); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 54 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 44; Viruses - 2; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G22310.1p transcript_id AT1G22310.1 protein_id AT1G22310.1p transcript_id AT1G22310.1
At1g22310	chr1:007881714	0.0	C/7881714-7882179,7882536-7883644	AT1G22310.2 CDS methyl-CPG-binding domain 8 [TAIR10] CDS gene_syn ATMBD8, MBD8, T16E15.7, T16E15_7, methyl-CPG-binding domain 8 gene MBD8 function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. go_component nucleus|GO:0005634||IEA go_process biological_process|GO:0008150||ND go_function methyl-CpG binding|GO:0008327|12787239|ISS product methyl-CPG-binding domain 8 note methyl-CPG-binding domain 8 (MBD8); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 148 Blast hits to 124 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 54; Fungi - 5; Plants - 70; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G22310.2p transcript_id AT1G22310.2 protein_id AT1G22310.2p transcript_id AT1G22310.2
At1g22320	chr1:007884417	0.0	C/7884417-7884454	AT1G22320.1 [TAIR10] tRNA gene_syn 61385.TRNA-MET-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Met (anticodon: CAT) transcript_id AT1G22320.1
At1g22330	chr1:007886693	0.0	W/7886693-7886878,7886951-7887074,7887452-7887569,7887991-7888024,7888317-7888623,7889135-7889241	AT1G22330.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn T16E15.6, T16E15_6 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G78260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22330.1p transcript_id AT1G22330.1 protein_id AT1G22330.1p transcript_id AT1G22330.1
At1g22340	chr1:007890464	0.0	C/7890464-7891410,7891574-7892090	AT1G22340.1 CDS UDP-glucosyl transferase 85A7 [TAIR10] CDS gene_syn AtUGT85A7, T16E15.5, T16E15_5, UDP-glucosyl transferase 85A7, UGT85A7 gene UGT85A7 go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-glucosyl transferase 85A7 note UDP-glucosyl transferase 85A7 (UGT85A7); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A2 (TAIR:AT1G22360.1); Has 7763 Blast hits to 7662 proteins in 424 species: Archae - 0; Bacteria - 289; Metazoa - 2112; Fungi - 32; Plants - 5212; Viruses - 58; Other Eukaryotes - 60 (source: NCBI BLink). protein_id AT1G22340.1p transcript_id AT1G22340.1 protein_id AT1G22340.1p transcript_id AT1G22340.1
At1g22350	chr1:007892878	0.0	C/7892878-7894498	AT1G22350.1 [TAIR10] pseudogene
At1g22360	chr1:007895068	0.0	C/7895068-7895211,7895248-7896005,7897020-7897527	AT1G22360.2 CDS UDP-glucosyl transferase 85A2 [TAIR10] CDS gene_syn AtUGT85A2, UDP-glucosyl transferase 85A2, UGT85A2 gene UGT85A2 go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-glucosyl transferase 85A2 note UDP-glucosyl transferase 85A2 (UGT85A2); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A3 (TAIR:AT1G22380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22360.2p transcript_id AT1G22360.2 protein_id AT1G22360.2p transcript_id AT1G22360.2
At1g22360	chr1:007895068	0.0	C/7895068-7896005,7897020-7897527	AT1G22360.1 CDS UDP-glucosyl transferase 85A2 [TAIR10] CDS gene_syn AtUGT85A2, UDP-glucosyl transferase 85A2, UGT85A2 gene UGT85A2 go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-glucosyl transferase 85A2 note UDP-glucosyl transferase 85A2 (UGT85A2); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G22400.1); Has 7750 Blast hits to 7637 proteins in 383 species: Archae - 0; Bacteria - 124; Metazoa - 2215; Fungi - 30; Plants - 5218; Viruses - 99; Other Eukaryotes - 64 (source: NCBI BLink). protein_id AT1G22360.1p transcript_id AT1G22360.1 protein_id AT1G22360.1p transcript_id AT1G22360.1
AT1G22360	chr1:007895068	0.0	C/7895068-7896005,7897020-7897527	AT1G22360.3 AT1G22360.3 CDS UDP-glucosyl transferase 85A2
At1g22370	chr1:007898116	0.0	C/7898116-7899038,7899363-7899879	AT1G22370.2 CDS UDP-glucosyl transferase 85A5 [TAIR10] CDS gene_syn AtUGT85A5, T16E15.2, T16E15_2, UDP-glucosyl transferase 85A5, UGT85A5 gene UGT85A5 go_process metabolic process|GO:0008152||IEA go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-glucosyl transferase 85A5 note UDP-glucosyl transferase 85A5 (UGT85A5); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A2 (TAIR:AT1G22360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22370.2p transcript_id AT1G22370.2 protein_id AT1G22370.2p transcript_id AT1G22370.2
At1g22370	chr1:007898116	0.0	C/7898116-7899045	AT1G22370.1 CDS UDP-glucosyl transferase 85A5 [TAIR10] CDS gene_syn AtUGT85A5, T16E15.2, T16E15_2, UDP-glucosyl transferase 85A5, UGT85A5 gene UGT85A5 go_process metabolic process|GO:0008152||IEA go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-glucosyl transferase 85A5 note UDP-glucosyl transferase 85A5 (UGT85A5); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A2 (TAIR:AT1G22360.1); Has 7586 Blast hits to 7530 proteins in 406 species: Archae - 0; Bacteria - 157; Metazoa - 2246; Fungi - 30; Plants - 4974; Viruses - 114; Other Eukaryotes - 65 (source: NCBI BLink). protein_id AT1G22370.1p transcript_id AT1G22370.1 protein_id AT1G22370.1p transcript_id AT1G22370.1
At1g22380	chr1:007900522	0.0	C/7900522-7901471,7901816-7902332	AT1G22380.1 CDS UDP-glucosyl transferase 85A3 [TAIR10] CDS gene_syn AtUGT85A3, UDP-glucosyl transferase 85A3, UGT85A3 gene UGT85A3 function Encodes a putative UDP-glucosyl transferase. At1g22380 was initially identified as encoding the protein AAF87154, which has been classified as a bHLH protein (AtbHLH152). Subsequently it has been found that the AAF87154 protein appears to be encoded by the AT1G23970 genomic locus. go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product UDP-glucosyl transferase 85A3 note UDP-glucosyl transferase 85A3 (UGT85A3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G22400.1); Has 7656 Blast hits to 7558 proteins in 363 species: Archae - 0; Bacteria - 87; Metazoa - 2193; Fungi - 26; Plants - 5186; Viruses - 99; Other Eukaryotes - 65 (source: NCBI BLink). protein_id AT1G22380.1p transcript_id AT1G22380.1 protein_id AT1G22380.1p transcript_id AT1G22380.1
At1g22400	chr1:007903851	0.0	C/7903851-7904803,7906091-7906607	AT1G22400.1 CDS UDP-Glycosyltransferase superfamily protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, ATUGT85A1, F12K8.26, F12K8_26, UGT85A1 gene UGT85A1 go_process metabolic process|GO:0008152||IEA go_component cellular_component|GO:0005575||ND go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS go_function trans-zeatin O-beta-D-glucosyltransferase activity|GO:0050403|15342621|IDA go_function cis-zeatin O-beta-D-glucosyltransferase activity|GO:0050502|15342621|IDA product UDP-Glycosyltransferase superfamily protein note UGT85A1; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A3 (TAIR:AT1G22380.1); Has 7940 Blast hits to 7832 proteins in 421 species: Archae - 0; Bacteria - 227; Metazoa - 2330; Fungi - 36; Plants - 5216; Viruses - 60; Other Eukaryotes - 71 (source: NCBI BLink). protein_id AT1G22400.1p transcript_id AT1G22400.1 protein_id AT1G22400.1p transcript_id AT1G22400.1
At1g22403	chr1:007908568	0.0	C/7908568-7909708	AT1G22403.2 [TAIR10] ncRNA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G22403.2
At1g22403	chr1:007908569	0.0	C/7908569-7908912,7909292-7909509	AT1G22403.1 [TAIR10] ncRNA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G22403.1
At1g22410	chr1:007912120	0.0	W/7912120-7912644,7912723-7913000,7913480-7913756,7913838-7914083,7914485-7914742	AT1G22410.1 CDS Class-II DAHP synthetase family protein [TAIR10] CDS gene_syn F12K8.24, F12K8_24 go_component membrane|GO:0016020|17432890|IDA go_function 3-deoxy-7-phosphoheptulonate synthase activity|GO:0003849||IEA go_process aromatic amino acid family biosynthetic process|GO:0009073|1967256|TAS product Class-II DAHP synthetase family protein note Class-II DAHP synthetase family protein; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (TAIR:AT4G39980.1); Has 3811 Blast hits to 3796 proteins in 685 species: Archae - 0; Bacteria - 1237; Metazoa - 0; Fungi - 110; Plants - 171; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink). protein_id AT1G22410.1p transcript_id AT1G22410.1 protein_id AT1G22410.1p transcript_id AT1G22410.1
At1g22420	chr1:007916076	0.0	C/7916076-7917518	AT1G22420.1 CDS hydroxyproline-rich glycoprotein family protein [TAIR10] CDS gene_syn F12K8.23, F12K8_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; Has 5656 Blast hits to 3947 proteins in 438 species: Archae - 16; Bacteria - 438; Metazoa - 2628; Fungi - 766; Plants - 800; Viruses - 196; Other Eukaryotes - 812 (source: NCBI BLink). protein_id AT1G22420.1p transcript_id AT1G22420.1 protein_id AT1G22420.1p transcript_id AT1G22420.1
At1g22430	chr1:007919235	0.0	W/7919235-7919426,7919509-7919555,7919706-7920034,7920184-7920266,7920423-7920498,7920828-7920892,7921033-7921128,7921225-7921386,7921478-7921594	AT1G22430.1 CDS GroES-like zinc-binding dehydrogenase family protein [TAIR10] CDS gene_syn F12K8.22, F12K8_22 go_process oxidation reduction|GO:0055114||IEA go_function zinc ion binding|GO:0008270||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND product GroES-like zinc-binding dehydrogenase family protein note GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT4G22110.2); Has 33980 Blast hits to 33961 proteins in 3177 species: Archae - 763; Bacteria - 21520; Metazoa - 1242; Fungi - 2509; Plants - 4182; Viruses - 3; Other Eukaryotes - 3761 (source: NCBI BLink). protein_id AT1G22430.1p transcript_id AT1G22430.1 protein_id AT1G22430.1p transcript_id AT1G22430.1
AT1G22430	chr1:007919235	0.0	W/7919235-7919426,7919509-7919555,7919706-7920034,7920184-7920266,7920423-7920498,7920828-7920892,7921033-7921182	AT1G22430.3 AT1G22430.3 CDS GroES-like zinc-binding dehydrogenase family protein
AT1G22430	chr1:007919235	0.0	W/7919235-7919426,7919509-7919555,7919706-7920034,7920184-7920266,7920423-7920498,7920828-7920979	AT1G22430.4 AT1G22430.4 CDS GroES-like zinc-binding dehydrogenase family protein
AT1G22430	chr1:007919235	0.0	W/7919235-7919426,7919509-7919555,7919706-7920034,7920184-7920266,7920423-7920498,7920828-7920979	AT1G22430.5 AT1G22430.5 CDS GroES-like zinc-binding dehydrogenase family protein
At1g22430	chr1:007919235	0.0	W/7919235-7919426,7919509-7919555,7919706-7920034,7920184-7920266,7920423-7920503,7920833-7920892,7921033-7921128,7921225-7921386,7921478-7921594	AT1G22430.2 CDS GroES-like zinc-binding dehydrogenase family protein [TAIR10] CDS gene_syn F12K8.22, F12K8_22 go_process oxidation reduction|GO:0055114||IEA go_function zinc ion binding|GO:0008270||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND product GroES-like zinc-binding dehydrogenase family protein note GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT4G22110.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22430.2p transcript_id AT1G22430.2 protein_id AT1G22430.2p transcript_id AT1G22430.2
At1g22440	chr1:007922560	0.0	W/7922560-7922745,7922831-7922877,7922973-7923301,7923449-7923531,7923650-7923725,7924020-7924084,7924188-7924283,7924367-7924528,7924643-7924759	AT1G22440.1 CDS Zinc-binding alcohol dehydrogenase family protein [TAIR10] CDS gene_syn F12K8.21, F12K8_21 go_process oxidation reduction|GO:0055114||IEA go_function zinc ion binding|GO:0008270||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component cellular_component|GO:0005575||ND product Zinc-binding alcohol dehydrogenase family protein note Zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT1G22430.2); Has 32607 Blast hits to 32587 proteins in 3168 species: Archae - 747; Bacteria - 20763; Metazoa - 1197; Fungi - 2370; Plants - 4104; Viruses - 3; Other Eukaryotes - 3423 (source: NCBI BLink). protein_id AT1G22440.1p transcript_id AT1G22440.1 protein_id AT1G22440.1p transcript_id AT1G22440.1
At1g22450	chr1:007925447	0.0	W/7925447-7925488,7925951-7926262,7926405-7926487,7926575-7926656,7926862-7926918	AT1G22450.1 CDS cytochrome C oxidase 6B [TAIR10] CDS gene_syn ATCOX6B2, COX6B, CYTOCHROME C OXIDASE 6B2, F12K8.20, F12K8_20, SUBUNIT 6B OF CYTOCHROME C OXIDASE, cytochrome C oxidase 6B gene COX6B function subunit 6b of cytochrome c oxidase go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component thylakoid|GO:0009579|14729914|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_component mitochondrion|GO:0005739|11250078|ISS go_component mitochondrion|GO:0005739||ISS go_process oxidation reduction|GO:0055114|11250078|ISS go_function cytochrome-c oxidase activity|GO:0004129||ISS go_function copper ion binding|GO:0005507|20018591|IDA product cytochrome C oxidase 6B note cytochrome C oxidase 6B (COX6B); FUNCTIONS IN: cytochrome-c oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, response to salt stress; LOCATED IN: thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase, subunit Vib family protein (TAIR:AT4G28060.1); Has 8194 Blast hits to 4240 proteins in 603 species: Archae - 36; Bacteria - 1026; Metazoa - 1662; Fungi - 831; Plants - 315; Viruses - 124; Other Eukaryotes - 4200 (source: NCBI BLink). protein_id AT1G22450.1p transcript_id AT1G22450.1 protein_id AT1G22450.1p transcript_id AT1G22450.1
At1g22460	chr1:007927530	0.0	C/7927530-7927665,7927745-7927840,7927926-7928110,7928183-7928396,7928475-7928608,7928688-7928997,7929102-7929190,7929287-7929354,7929436-7929535,7929773-7929871,7929985-7930089,7930190-7930351	AT1G22460.1 CDS O-fucosyltransferase family protein [TAIR10] CDS gene_syn F12K8.19, F12K8_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product O-fucosyltransferase family protein note O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G64600.1); Has 841 Blast hits to 817 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22460.1p transcript_id AT1G22460.1 protein_id AT1G22460.1p transcript_id AT1G22460.1
At1g22470	chr1:007932908	0.0	C/7932908-7933348	AT1G22470.1 CDS hypothetical protein [TAIR10] CDS gene_syn F12K8.18, F12K8_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72240.1); Has 1693 Blast hits to 236 proteins in 54 species: Archae - 0; Bacteria - 8; Metazoa - 451; Fungi - 116; Plants - 94; Viruses - 2; Other Eukaryotes - 1022 (source: NCBI BLink). protein_id AT1G22470.1p transcript_id AT1G22470.1 protein_id AT1G22470.1p transcript_id AT1G22470.1
At1g22480	chr1:007934232	0.0	C/7934232-7934611,7934910-7935054	AT1G22480.1 CDS Cupredoxin superfamily protein [TAIR10] CDS gene_syn F12K8.17, F12K8_17 go_function copper ion binding|GO:0005507||IEA go_function electron carrier activity|GO:0009055||IEA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_function copper ion binding|GO:0005507||ISS product Cupredoxin superfamily protein note Cupredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: shoot apex, inflorescence meristem, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G72230.1); Has 1407 Blast hits to 1384 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 14; Plants - 1390; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G22480.1p transcript_id AT1G22480.1 protein_id AT1G22480.1p transcript_id AT1G22480.1
At1g22490	chr1:007938448	0.0	C/7938448-7938534,7939196-7939585,7940052-7940489	AT1G22490.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F12K8.16, F12K8_16 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G72210.1); Has 1544 Blast hits to 1534 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 34; Plants - 1460; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G22490.1p transcript_id AT1G22490.1 protein_id AT1G22490.1p transcript_id AT1G22490.1
AT1G22490	chr1:007939043	0.0	C/7939043-7939585,7940052-7940489	AT1G22490.2 AT1G22490.2 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein
At1g22500	chr1:007949581	0.0	W/7949581-7950726	AT1G22500.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F12K8.15, F12K8_15 go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink). protein_id AT1G22500.1p transcript_id AT1G22500.1 protein_id AT1G22500.1p transcript_id AT1G22500.1
At1g22510	chr1:007951003	0.0	C/7951003-7951115,7951217-7951268,7951413-7951514,7951965-7952164,7952449-7952593	AT1G22510.2 CDS E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [TAIR10] CDS gene_syn F12K8.14, F12K8_14 go_function zinc ion binding|GO:0008270||ISS product RING/U-box protein with domain of unknown function (DUF 1232) note RING/U-box protein with domain of unknown function (DUF 1232); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G72175.1). protein_id AT1G22510.2p transcript_id AT1G22510.2 protein_id AT1G22510.2p transcript_id AT1G22510.2
At1g22510	chr1:007951003	0.0	C/7951003-7951115,7951217-7951268,7951413-7951514,7951965-7952164,7952507-7952597	AT1G22510.1 CDS E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [TAIR10] CDS gene_syn F12K8.14, F12K8_14 go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box protein with domain of unknown function (DUF 1232) note FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G72175.1); Has 639 Blast hits to 639 proteins in 126 species: Archae - 0; Bacteria - 17; Metazoa - 440; Fungi - 43; Plants - 76; Viruses - 2; Other Eukaryotes - 61 (source: NCBI BLink). protein_id AT1G22510.1p transcript_id AT1G22510.1 protein_id AT1G22510.1p transcript_id AT1G22510.1
At1g22520	chr1:007952996	0.0	C/7952996-7953170,7953278-7953313,7953693-7953721,7953794-7953963,7954175-7954304	AT1G22520.2 CDS MICOS complex subunit Mic10-like protein (DUF543) [TAIR10] CDS gene_syn F12K8.27, F12K8_27 go_component mitochondrion|GO:0005739|14671022|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF543) note Domain of unknown function (DUF543); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF543) (TAIR:AT1G72170.1); Has 115 Blast hits to 115 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 7; Plants - 57; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). protein_id AT1G22520.2p transcript_id AT1G22520.2 protein_id AT1G22520.2p transcript_id AT1G22520.2
At1g22520	chr1:007953299	0.0	C/7953299-7953313,7953809-7953963,7954175-7954304	AT1G22520.1 CDS MICOS complex subunit Mic10-like protein (DUF543) [TAIR10] CDS gene_syn F12K8.27, F12K8_27 go_component mitochondrion|GO:0005739|14671022|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF543) note Domain of unknown function (DUF543); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF543) (TAIR:AT1G72170.1); Has 107 Blast hits to 107 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). protein_id AT1G22520.1p transcript_id AT1G22520.1 protein_id AT1G22520.1p transcript_id AT1G22520.1
AT1G22530	chr1:007955773	0.0	C/7955773-7956018,7956351-7956486,7956581-7956708,7956785-7957549,7957652-7958326	AT1G22530.2 AT1G22530.2 CDS PATELLIN 2
At1g22530	chr1:007955773	0.0	C/7955773-7956018,7956351-7956486,7956581-7956708,7956785-7958326	AT1G22530.1 CDS PATELLIN 2 [TAIR10] CDS gene_syn F12K8.13, F12K8_13, PATELLIN 2, PATL2 gene PATL2 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|15028209|IDA go_process transport|GO:0006810||IEA go_function transporter activity|GO:0005215||IEA go_process transport|GO:0006810||ISS go_function transporter activity|GO:0005215||ISS product PATELLIN 2 note PATELLIN 2 (PATL2); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: PATELLIN 1 (TAIR:AT1G72150.1); Has 61558 Blast hits to 35948 proteins in 2575 species: Archae - 235; Bacteria - 13717; Metazoa - 20974; Fungi - 8097; Plants - 3493; Viruses - 317; Other Eukaryotes - 14725 (source: NCBI BLink). protein_id AT1G22530.1p transcript_id AT1G22530.1 protein_id AT1G22530.1p transcript_id AT1G22530.1
At1g22540	chr1:007964202	0.0	W/7964202-7964325,7964442-7964659,7964805-7965337,7965424-7966222	AT1G22540.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn F12K8.12, F12K8_12 go_component membrane|GO:0016020||IEA go_process oligopeptide transport|GO:0006857||IEA go_component membrane|GO:0016020||ISS go_process oligopeptide transport|GO:0006857||ISS go_function transporter activity|GO:0005215||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G72140.1); Has 7676 Blast hits to 7510 proteins in 1439 species: Archae - 0; Bacteria - 3907; Metazoa - 586; Fungi - 484; Plants - 2183; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink). protein_id AT1G22540.1p transcript_id AT1G22540.1 protein_id AT1G22540.1p transcript_id AT1G22540.1
At1g22550	chr1:007966608	0.0	C/7966608-7967415,7967494-7968038,7968122-7968339,7968429-7968552	AT1G22550.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn F12K8.11, F12K8_11 go_component membrane|GO:0016020||IEA go_process oligopeptide transport|GO:0006857||IEA go_component membrane|GO:0016020||ISS go_process oligopeptide transport|GO:0006857||ISS go_function transporter activity|GO:0005215||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G22570.1); Has 7743 Blast hits to 7641 proteins in 1463 species: Archae - 0; Bacteria - 4037; Metazoa - 494; Fungi - 461; Plants - 2187; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink). protein_id AT1G22550.1p transcript_id AT1G22550.1 protein_id AT1G22550.1p transcript_id AT1G22550.1
At1g22560	chr1:007970248	0.0	W/7970248-7974396	AT1G22560.1 [TAIR10] mRNA
At1g22560	chr1:007970248	0.0	W/7970248-7974396	AT1G22560 [TAIR10] TE pseudo gene_syn F12K8.9 note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.4e-20 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)
At1g22570	chr1:007976620	0.0	C/7976620-7977415,7977495-7978054,7978151-7978368,7978450-7978573	AT1G22570.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn F12K8.8, F12K8_8 go_component membrane|GO:0016020||IEA go_process oligopeptide transport|GO:0006857||IEA go_component membrane|GO:0016020||ISS go_process oligopeptide transport|GO:0006857||ISS go_function transporter activity|GO:0005215||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G22550.1); Has 7774 Blast hits to 7634 proteins in 1454 species: Archae - 0; Bacteria - 4021; Metazoa - 491; Fungi - 475; Plants - 2200; Viruses - 0; Other Eukaryotes - 587 (source: NCBI BLink). protein_id AT1G22570.1p transcript_id AT1G22570.1 protein_id AT1G22570.1p transcript_id AT1G22570.1
AT1G22570	chr1:007976620	0.0	C/7976620-7977415,7977495-7978054,7978151-7978381	AT1G22570.2 AT1G22570.2 CDS Major facilitator superfamily protein
At1g22580	chr1:007980709	0.0	W/7980709-7981263	AT1G22580.1 [TAIR10] mRNA
At1g22580	chr1:007980709	0.0	W/7980709-7981263	AT1G22580 [TAIR10] TE pseudo gene_syn F12K8.30 note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 32% identity and 1.1e-13 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
At1g22590	chr1:007981849	0.0	W/7981849-7981874,7982045-7982113,7983720-7984002	AT1G22590.1 CDS AGAMOUS-like 87 [TAIR10] CDS gene_syn AGAMOUS-like 87, AGL87, F12K8.7, F12K8_7 gene AGL87 go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS product AGAMOUS-like 87 note AGAMOUS-like 87 (AGL87); Has 9 Blast hits to 9 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G22590.1p transcript_id AT1G22590.1 protein_id AT1G22590.1p transcript_id AT1G22590.1
At1g22590	chr1:007983511	0.0	W/7983511-7984002	AT1G22590.2 CDS AGAMOUS-like 87 [TAIR10] CDS gene_syn AGAMOUS-like 87, AGL87, F12K8.7, F12K8_7 gene AGL87 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS product AGAMOUS-like 87 note AGAMOUS-like 87 (AGL87); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT3G05860.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22590.2p transcript_id AT1G22590.2 protein_id AT1G22590.2p transcript_id AT1G22590.2
At1g22600	chr1:007987308	0.0	C/7987308-7987580,7988303-7989187	AT1G22600.1 CDS Late embryogenesis abundant protein (LEA) family protein [TAIR10] CDS gene_syn F12K8.5, F12K8_5 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Late embryogenesis abundant protein (LEA) family protein note Late embryogenesis abundant protein (LEA) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, embryo, sperm cell, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT1G72100.1); Has 169 Blast hits to 166 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 8; Plants - 85; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G22600.1p transcript_id AT1G22600.1 protein_id AT1G22600.1p transcript_id AT1G22600.1
At1g22610	chr1:007994478	0.0	W/7994478-7997567	AT1G22610.1 CDS C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [TAIR10] CDS gene_syn F12K8.4, F12K8_4 go_component chloroplast|GO:0009507|15028209|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product C2 calcium/lipid-binding plant phosphoribosyltransferase family protein note C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT4G11610.1); Has 9288 Blast hits to 5214 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 6273; Fungi - 392; Plants - 2016; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink). protein_id AT1G22610.1p transcript_id AT1G22610.1 protein_id AT1G22610.1p transcript_id AT1G22610.1
At1g22620	chr1:007997889	0.0	C/7997889-7998140,7998234-7998345,7998533-7998718,7998907-7999119,7999309-7999419,7999713-7999834,7999923-8000307,8000444-8000578,8000651-8000784,8000874-8000971,8001096-8001283,8001507-8001583,8001661-8001883,8002010-8002175,8002265-8002469,8002656-8002787	AT1G22620.1 CDS Phosphoinositide phosphatase family protein [TAIR10] CDS gene_syn ATSAC1, F12K8.3, suppressor of actin 1 gene ATSAC1 function SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization. go_component Golgi apparatus|GO:0005794|15805481|IDA go_process cytoskeleton organization|GO:0007010|15805481|IMP go_process unidimensional cell growth|GO:0009826|15805481|IMP go_process plant-type cell wall biogenesis|GO:0009832|15805481|IMP go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439|15805481|IDA go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS product Phosphoinositide phosphatase family protein note suppressor of actin 1 (ATSAC1); CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT3G14205.1); Has 2374 Blast hits to 1664 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 925; Fungi - 777; Plants - 320; Viruses - 0; Other Eukaryotes - 352 (source: NCBI BLink). protein_id AT1G22620.1p transcript_id AT1G22620.1 protein_id AT1G22620.1p transcript_id AT1G22620.1
At1g22630	chr1:008003487	0.0	W/8003487-8003624,8003717-8003776,8003927-8003973,8004080-8004167	AT1G22630.1 CDS SSUH2-like protein, putative [TAIR10] CDS gene_syn F12K8.2 go_component chloroplast|GO:0009507|18431481|IDA product unknown protein note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G22630.1p transcript_id AT1G22630.1 protein_id AT1G22630.1p transcript_id AT1G22630.1
At1g22640	chr1:008006289	0.0	W/8006289-8006421,8006499-8006628,8006709-8007219	AT1G22640.1 CDS myb domain protein 3 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, ATMYB3, MYB3, T22J18.19, T22J18_19, TRANSCRIPTION FACTOR MYB3, myb domain protein 3 gene MYB3 function MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS go_process response to wounding|GO:0009611|12068110|IEP go_process response to salt stress|GO:0009651|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process cinnamic acid biosynthetic process|GO:0009800|12068110|TAS go_process negative regulation of metabolic process|GO:0009892|12068110|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb domain protein 3 note myb domain protein 3 (MYB3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 6 (TAIR:AT4G09460.1); Has 9176 Blast hits to 8476 proteins in 489 species: Archae - 0; Bacteria - 0; Metazoa - 739; Fungi - 510; Plants - 6085; Viruses - 3; Other Eukaryotes - 1839 (source: NCBI BLink). protein_id AT1G22640.1p transcript_id AT1G22640.1 protein_id AT1G22640.1p transcript_id AT1G22640.1
AT1G22640	chr1:008006537	0.0	W/8006537-8006628,8006709-8007219	AT1G22640.3 AT1G22640.3 CDS myb domain protein 3
AT1G22640	chr1:008006662	0.0	W/8006662-8007219	AT1G22640.2 AT1G22640.2 CDS myb domain protein 3
At1g22650	chr1:008013529	0.0	C/8013529-8013821,8014120-8014678,8014799-8015230,8015327-8015647	AT1G22650.1 CDS Plant neutral invertase family protein [TAIR10] CDS gene_syn T22J18.18, T22J18_18 go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA go_function catalytic activity|GO:0003824||IEA go_component cellular_component|GO:0005575||ND go_function beta-fructofuranosidase activity|GO:0004564||ISS product Plant neutral invertase family protein note Plant neutral invertase family protein; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: cytosolic invertase 2 (TAIR:AT4G09510.1); Has 703 Blast hits to 700 proteins in 102 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink). protein_id AT1G22650.1p transcript_id AT1G22650.1 protein_id AT1G22650.1p transcript_id AT1G22650.1
AT1G22650	chr1:008014025	0.0	C/8014025-8014678,8014799-8015230,8015327-8015647	AT1G22650.2 AT1G22650.2 CDS Plant neutral invertase family protein
At1g22651	chr1:008016126	0.0	W/8016126-8016287	AT1G22651.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22651.1p transcript_id AT1G22651.1 protein_id AT1G22651.1p transcript_id AT1G22651.1
AT1G22660	chr1:008017395	0.0	W/8017395-8017769,8017869-8017999,8018085-8018202,8018358-8018410,8018517-8018566,8018648-8018746,8018873-8018982,8019073-8019200,8019306-8019372,8019484-8019567,8019662-8019724,8019983-8020160,8020367-8020540,8020884-8020981,8021434-8021538	AT1G22660.4 AT1G22660.4 CDS Polynucleotide adenylyltransferase family protein
AT1G22660	chr1:008017395	0.0	W/8017395-8017769,8017869-8017999,8018085-8018202,8018358-8018410,8018517-8018566,8018648-8018746,8018873-8018982,8019073-8019200,8019306-8019372,8019484-8019567,8019662-8019724,8019983-8020160,8020367-8020551	AT1G22660.3 AT1G22660.3 CDS Polynucleotide adenylyltransferase family protein
At1g22660	chr1:008017410	0.0	W/8017410-8017769,8017869-8017999,8018085-8018202,8018358-8018410,8018517-8018566,8018648-8018746,8018873-8018982,8019073-8019200,8019306-8019372,8019484-8019567,8019662-8019724,8019983-8020160,8020367-8020540,8020884-8020981,8021434-8021538	AT1G22660.1 CDS Polynucleotide adenylyltransferase family protein [TAIR10] CDS gene_syn T22J18.17, T22J18_17 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_function nucleotidyltransferase activity|GO:0016779||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_process tRNA processing|GO:0008033||ISS go_function tRNA adenylyltransferase activity|GO:0004810||ISS product Polynucleotide adenylyltransferase family protein note Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 8643 Blast hits to 8635 proteins in 2546 species: Archae - 2; Bacteria - 6091; Metazoa - 128; Fungi - 234; Plants - 120; Viruses - 8; Other Eukaryotes - 2060 (source: NCBI BLink). protein_id AT1G22660.1p transcript_id AT1G22660.1 protein_id AT1G22660.1p transcript_id AT1G22660.1
At1g22660	chr1:008017410	0.0	W/8017410-8017769,8017869-8017999,8018085-8018202,8018358-8018410,8018517-8018566,8018648-8018746,8018873-8018982,8019073-8019200,8019306-8019372,8019484-8019567,8019662-8019724,8019983-8020160,8020367-8020540,8020884-8020981,8021440-8021538	AT1G22660.2 CDS Polynucleotide adenylyltransferase family protein [TAIR10] CDS gene_syn T22J18.17, T22J18_17 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_function nucleotidyltransferase activity|GO:0016779||IEA go_component mitochondrion|GO:0005739|14671022|IDA go_process tRNA processing|GO:0008033||ISS go_function tRNA adenylyltransferase activity|GO:0004810||ISS product Polynucleotide adenylyltransferase family protein note Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22660.2p transcript_id AT1G22660.2 protein_id AT1G22660.2p transcript_id AT1G22660.2
AT1G22660	chr1:008017410	0.0	W/8017410-8017769,8017869-8017999,8018085-8018202,8018358-8018410,8018517-8018566,8018648-8018746,8018873-8018982,8019073-8019200,8019306-8019372,8019484-8019567,8019662-8019724,8019983-8020160,8020367-8020551	AT1G22660.5 AT1G22660.5 CDS Polynucleotide adenylyltransferase family protein
At1g22670	chr1:008021854	0.0	C/8021854-8022365,8022447-8022845,8022936-8023163,8023387-8023516	AT1G22670.1 CDS Protease-associated (PA) RING/U-box zinc finger family protein [TAIR10] CDS gene_syn T22J18.16, T22J18_16 go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_function peptidase activity|GO:0008233||ISS go_function zinc ion binding|GO:0008270||ISS product Protease-associated (PA) RING/U-box zinc finger family protein note Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8678 Blast hits to 8642 proteins in 327 species: Archae - 0; Bacteria - 157; Metazoa - 2256; Fungi - 639; Plants - 4696; Viruses - 9; Other Eukaryotes - 921 (source: NCBI BLink). protein_id AT1G22670.1p transcript_id AT1G22670.1 protein_id AT1G22670.1p transcript_id AT1G22670.1
At1g22680	chr1:008025503	0.0	C/8025503-8026060	AT1G22680.1 CDS hypothetical protein [TAIR10] CDS gene_syn T22J18.15, T22J18_15 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71970.1); Has 44 Blast hits to 44 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22680.1p transcript_id AT1G22680.1 protein_id AT1G22680.1p transcript_id AT1G22680.1
At1g22690	chr1:008027328	0.0	W/8027328-8027390,8027482-8027535,8027624-8027684,8027780-8027961	AT1G22690.1 CDS Gibberellin-regulated family protein [TAIR10] CDS gene_syn T22J18.14, T22J18_14 go_component endomembrane system|GO:0012505||IEA go_process response to gibberellin stimulus|GO:0009739||ISS go_function molecular_function|GO:0003674||ND product Gibberellin-regulated family protein note Gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G18420.1); Has 468 Blast hits to 468 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 468; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22690.1p transcript_id AT1G22690.1 protein_id AT1G22690.1p transcript_id AT1G22690.1
At1g22690	chr1:008027328	0.0	W/8027328-8027390,8027482-8027535,8027624-8027684,8027780-8027961	AT1G22690.2 CDS Gibberellin-regulated family protein [TAIR10] CDS gene_syn T22J18.14, T22J18_14 go_component endomembrane system|GO:0012505||IEA go_process response to gibberellin stimulus|GO:0009739||ISS go_function molecular_function|GO:0003674||ND product Gibberellin-regulated family protein note Gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G18420.1). protein_id AT1G22690.2p transcript_id AT1G22690.2 protein_id AT1G22690.2p transcript_id AT1G22690.2
At1g22690	chr1:008027328	0.0	W/8027328-8027390,8027482-8027535,8027624-8027684,8027780-8027961	AT1G22690.3 CDS Gibberellin-regulated family protein [TAIR10] CDS gene_syn T22J18.14, T22J18_14 go_component endomembrane system|GO:0012505||IEA go_process response to gibberellin stimulus|GO:0009739||ISS go_function molecular_function|GO:0003674||ND product Gibberellin-regulated family protein note Gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G18420.1). protein_id AT1G22690.3p transcript_id AT1G22690.3 protein_id AT1G22690.3p transcript_id AT1G22690.3
At1g22700	chr1:008028323	0.0	C/8028323-8028607,8028687-8028833,8029086-8029289	AT1G22700.3 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T22J18.13, T22J18_13 function Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis. go_component chloroplast|GO:0009507|18431481|IDA go_function binding|GO:0005488||IEA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_process photosystem I assembly|GO:0048564|16679416|IMP product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4968 Blast hits to 3486 proteins in 584 species: Archae - 119; Bacteria - 1806; Metazoa - 382; Fungi - 135; Plants - 249; Viruses - 0; Other Eukaryotes - 2277 (source: NCBI BLink). protein_id AT1G22700.3p transcript_id AT1G22700.3 protein_id AT1G22700.3p transcript_id AT1G22700.3
At1g22700	chr1:008028323	0.0	C/8028323-8028607,8028687-8028833,8029086-8029384,8029488-8029524,8029756-8029878	AT1G22700.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T22J18.13, T22J18_13 function Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_function binding|GO:0005488||IEA go_process photosystem I assembly|GO:0048564|16679416|IMP product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4973 Blast hits to 3484 proteins in 586 species: Archae - 121; Bacteria - 1802; Metazoa - 381; Fungi - 139; Plants - 249; Viruses - 0; Other Eukaryotes - 2281 (source: NCBI BLink). protein_id AT1G22700.2p transcript_id AT1G22700.2 protein_id AT1G22700.2p transcript_id AT1G22700.2
At1g22700	chr1:008028323	0.0	C/8028323-8028607,8028687-8028833,8029086-8029399,8029488-8029524,8029756-8029878	AT1G22700.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T22J18.13, T22J18_13 function Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_function binding|GO:0005488||IEA go_process photosystem I assembly|GO:0048564|16679416|IMP product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4976 Blast hits to 3489 proteins in 588 species: Archae - 121; Bacteria - 1806; Metazoa - 382; Fungi - 139; Plants - 249; Viruses - 0; Other Eukaryotes - 2279 (source: NCBI BLink). protein_id AT1G22700.1p transcript_id AT1G22700.1 protein_id AT1G22700.1p transcript_id AT1G22700.1
At1g22710	chr1:008030911	0.0	C/8030911-8031084,8031174-8031217,8031505-8031568,8031714-8032970	AT1G22710.1 CDS sucrose-proton symporter 2 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, ATSUC2, SUC2, SUCROSE TRANSPORTER 1, SUCROSE-H+ SYMPORTER, SUT1, T22J18.12, T22J18_12, sucrose-proton symporter 2 gene SUC2 function Encodes for a high-affinity transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transport a wide range of physiological and synthetic glucose conjugates with both &#945;- or &#946;-linkage. go_component plasma membrane|GO:0005886|11087840|TAS go_component plasma membrane|GO:0005886|12954621|IDA go_component membrane|GO:0016020||ISS go_process phloem loading|GO:0009915||NAS go_function sugar:hydrogen symporter activity|GO:0005351||ISS go_function sucrose:hydrogen symporter activity|GO:0008506|16091371|TAS go_function sucrose:hydrogen symporter activity|GO:0008506||ISS go_function sucrose transmembrane transporter activity|GO:0008515|12954621|IGI go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS product sucrose-proton symporter 2 note sucrose-proton symporter 2 (SUC2); CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 1 (TAIR:AT1G71880.1); Has 2329 Blast hits to 2203 proteins in 568 species: Archae - 32; Bacteria - 908; Metazoa - 423; Fungi - 192; Plants - 420; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink). protein_id AT1G22710.1p transcript_id AT1G22710.1 protein_id AT1G22710.1p transcript_id AT1G22710.1
At1g22720	chr1:008044232	0.0	C/8044232-8044694,8045392-8045527,8045605-8045665	AT1G22720.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn T22J18.11, T22J18_11 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function calcium ion binding|GO:0005509||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_process protein amino acid phosphorylation|GO:0006468||ISS go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding (InterPro:IPR001881), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: wall associated kinase 4 (TAIR:AT1G21210.1); Has 17182 Blast hits to 16977 proteins in 349 species: Archae - 4; Bacteria - 9; Metazoa - 1405; Fungi - 31; Plants - 15495; Viruses - 26; Other Eukaryotes - 212 (source: NCBI BLink). protein_id AT1G22720.1p transcript_id AT1G22720.1 protein_id AT1G22720.1p transcript_id AT1G22720.1
At1g22730	chr1:008046511	0.0	W/8046511-8046655,8046741-8046814,8046907-8048769	AT1G22730.1 CDS MA3 domain-containing protein [TAIR10] CDS gene_syn T22J18.10, T22J18_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MA3 domain-containing protein note MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 2025 Blast hits to 776 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1297; Fungi - 8; Plants - 551; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). protein_id AT1G22730.1p transcript_id AT1G22730.1 protein_id AT1G22730.1p transcript_id AT1G22730.1
At1g22740	chr1:008049247	0.0	W/8049247-8049299,8049393-8049419,8049540-8049639,8049738-8049884,8049981-8050061,8050145-8050290,8050437-8050494	AT1G22740.1 CDS RAB GTPase homolog G3B [TAIR10] CDS gene_syn ATRABG3B, RAB GTPase homolog G3B, RAB7, RAB75, RABG3B, T22J18.9, T22J18_9 gene RABG3B function GTP-binding protein Rab7 go_component vacuole|GO:0005773|15539469|IDA go_process intracellular protein transport|GO:0006886||IEA go_process nucleocytoplasmic transport|GO:0006913||IEA go_process signal transduction|GO:0007165||IEA go_process small GTPase mediated signal transduction|GO:0007264||IEA go_process protein transport|GO:0015031||IEA go_function GTP binding|GO:0005525|9369203|ISS go_function GTP binding|GO:0005525||ISS product RAB GTPase homolog G3B note RAB GTPase homolog G3B (RABG3B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3A (TAIR:AT4G09720.1); Has 25691 Blast hits to 25666 proteins in 724 species: Archae - 21; Bacteria - 135; Metazoa - 13533; Fungi - 3489; Plants - 2837; Viruses - 20; Other Eukaryotes - 5656 (source: NCBI BLink). protein_id AT1G22740.1p transcript_id AT1G22740.1 protein_id AT1G22740.1p transcript_id AT1G22740.1
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052606-8052618	AT1G22750.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T22J18.8, T22J18_8 go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 185 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). protein_id AT1G22750.1p transcript_id AT1G22750.1 protein_id AT1G22750.1p transcript_id AT1G22750.1
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052610-8052631	AT1G22750.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T22J18.8, T22J18_8 go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 185 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). protein_id AT1G22750.2p transcript_id AT1G22750.2 protein_id AT1G22750.2p transcript_id AT1G22750.2
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052615-8052618	AT1G22750.3 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T22J18.8, T22J18_8 go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22750.3p transcript_id AT1G22750.3 protein_id AT1G22750.3p transcript_id AT1G22750.3
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052663-8052714	AT1G22750.4 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T22J18.8, T22J18_8 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 186 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). protein_id AT1G22750.4p transcript_id AT1G22750.4 protein_id AT1G22750.4p transcript_id AT1G22750.4
At1g22760	chr1:008055599	0.0	W/8055599-8055902,8056417-8057198,8057291-8057368,8057455-8057544,8057636-8057932,8058004-8058219,8058584-8058799	AT1G22760.1 CDS poly(A) binding protein 3 [TAIR10] CDS gene_syn PAB3, POLY(A) BINDING PROTEIN 3, T22J18.7, T22J18_7, poly(A) binding protein 3 gene PAB3 function Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs. go_process mRNA processing|GO:0006397|11516954|IGI go_function RNA binding|GO:0003723||ISS go_function translation initiation factor activity|GO:0003743||ISS product poly(A) binding protein 3 note poly(A) binding protein 3 (PAB3); CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A)-binding protein 5 (TAIR:AT1G71770.2); Has 52215 Blast hits to 23458 proteins in 902 species: Archae - 22; Bacteria - 3112; Metazoa - 26727; Fungi - 6853; Plants - 9433; Viruses - 0; Other Eukaryotes - 6068 (source: NCBI BLink). protein_id AT1G22760.1p transcript_id AT1G22760.1 protein_id AT1G22760.1p transcript_id AT1G22760.1
At1g22767	chr1:008061042	0.0	C/8061042-8061176	AT1G22767.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22767.1p transcript_id AT1G22767.1 protein_id AT1G22767.1p transcript_id AT1G22767.1
At1g22770	chr1:008062398	0.0	W/8062398-8062562,8062643-8062697,8062776-8062918,8063003-8063274,8063421-8063476,8063646-8063883,8064010-8064160,8064287-8064496,8064597-8066129,8066242-8066310,8066612-8066830,8066923-8067015,8067130-8067447	AT1G22770.1 CDS gigantea protein (GI) [TAIR10] CDS gene_syn FB, GI, GIGANTEA, T22J18.6, T22J18_6 gene GI function Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene's transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Forms a complex with FKF1 on the CO promoter to regulate CO expression. go_component nucleus|GO:0005634|16006578|IDA go_component nucleoplasm|GO:0005654|10920210|IDA go_process circadian rhythm|GO:0007623|17872410|IDA go_process response to cold|GO:0009409|16231185|IMP go_process response to blue light|GO:0009637|17872410|IDA go_process flower development|GO:0009908|10202817|TAS go_process response to far red light|GO:0010218|18790998|IMP go_process temperature compensation of the circadian clock|GO:0010378|16617099|IMP go_process response to hydrogen peroxide|GO:0042542|9681039|IMP go_process regulation of circadian rhythm|GO:0042752|16006578|IMP go_process regulation of transcription|GO:0045449|17872410|IDA go_process positive regulation of long-day photoperiodism, flowering|GO:0048578|16006578|IMP go_process response to karrikin|GO:0080167|20351290|IEP go_function protein binding|GO:0005515|19452453|IPI product gigantea protein (GI) note GIGANTEA (GI); Has 351 Blast hits to 349 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22770.1p transcript_id AT1G22770.1 protein_id AT1G22770.1p transcript_id AT1G22770.1
At1g22780	chr1:008067990	0.0	W/8067990-8067992,8068177-8068337,8068603-8068791,8069058-8069163	AT1G22780.1 CDS Ribosomal protein S13/S18 family [TAIR10] CDS gene_syn 40S RIBOSOMAL PROTEIN S18, PFL, PFL1, POINTED FIRST LEAVES, POINTED FIRST LEAVES 1, RPS18A, T22J18.5, T22J18_5 gene PFL function S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840|7913892|ISS go_component small ribosomal subunit|GO:0015935||ISS go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA go_process translation|GO:0006412||ISS go_process translational initiation|GO:0006413|7913892|TAS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein S13/S18 family note POINTED FIRST LEAVES (PFL); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translational initiation, translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, small ribosomal subunit, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: S18 ribosomal protein (TAIR:AT4G09800.1); Has 7956 Blast hits to 7953 proteins in 2911 species: Archae - 236; Bacteria - 5065; Metazoa - 352; Fungi - 176; Plants - 401; Viruses - 0; Other Eukaryotes - 1726 (source: NCBI BLink). protein_id AT1G22780.1p transcript_id AT1G22780.1 protein_id AT1G22780.1p transcript_id AT1G22780.1
At1g22790	chr1:008070271	0.0	W/8070271-8070851,8071223-8071292	AT1G22790.1 CDS Low affinity potassium transport system protein, putative [TAIR10] CDS gene_syn T22J18.4, T22J18_4 go_component plasma membrane|GO:0005886|14506206|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 67 Blast hits to 67 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22790.1p transcript_id AT1G22790.1 protein_id AT1G22790.1p transcript_id AT1G22790.1
At1g22790	chr1:008070271	0.0	W/8070271-8070851,8071223-8071292	AT1G22790.2 CDS Low affinity potassium transport system protein, putative [TAIR10] CDS gene_syn T22J18.4, T22J18_4 go_component plasma membrane|GO:0005886|14506206|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22790.2p transcript_id AT1G22790.2 protein_id AT1G22790.2p transcript_id AT1G22790.2
At1g22800	chr1:008072020	0.0	W/8072020-8072211,8072307-8072390,8072505-8072583,8072663-8072804,8072916-8072985,8073085-8073149,8073249-8073327,8073408-8073495,8073596-8073750,8073926-8074039	AT1G22800.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn T22J18.3, T22J18_3 go_process metabolic process|GO:0008152||IEA go_function methyltransferase activity|GO:0008168||IEA go_component cellular_component|GO:0005575||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 2362 Blast hits to 2362 proteins in 955 species: Archae - 8; Bacteria - 1684; Metazoa - 119; Fungi - 106; Plants - 46; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink). protein_id AT1G22800.1p transcript_id AT1G22800.1 protein_id AT1G22800.1p transcript_id AT1G22800.1
At1g22810	chr1:008074535	0.0	C/8074535-8074969	AT1G22810.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn T22J18.2, T22J18_2 function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Integrase-type DNA-binding superfamily protein note Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71520.1); Has 4908 Blast hits to 4906 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4903; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G22810.1p transcript_id AT1G22810.1 protein_id AT1G22810.1p transcript_id AT1G22810.1
At1g22830	chr1:008076921	0.0	W/8076921-8079032	AT1G22830.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink). protein_id AT1G22830.1p transcript_id AT1G22830.1 protein_id AT1G22830.1p transcript_id AT1G22830.1
At1g22830	chr1:008076921	0.0	W/8076921-8079032	AT1G22830.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink). protein_id AT1G22830.2p transcript_id AT1G22830.2 protein_id AT1G22830.2p transcript_id AT1G22830.2
At1g22840	chr1:008079384	0.0	W/8079384-8079495,8079975-8080108,8080188-8080286	AT1G22840.1 CDS CYTOCHROME C-1 [TAIR10] CDS gene_syn APOCYTOCHROME C-A, ATCYTC-A, CYTC-1, CYTOCHROME C-1, CYTOCHROME C-A, F19G10.20, F19G10_20 gene CYTC-1 function Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers. go_component plasma membrane|GO:0005886|17151019|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_process cell proliferation|GO:0008283|16113211|TAS go_function copper ion binding|GO:0005507|20018591|IDA go_function electron carrier activity|GO:0009055||ISS product CYTOCHROME C-1 note CYTOCHROME C-1 (CYTC-1); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: cell proliferation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: cytochrome c-2 (TAIR:AT4G10040.1); Has 4039 Blast hits to 4017 proteins in 749 species: Archae - 0; Bacteria - 1490; Metazoa - 642; Fungi - 252; Plants - 160; Viruses - 0; Other Eukaryotes - 1495 (source: NCBI BLink). protein_id AT1G22840.1p transcript_id AT1G22840.1 protein_id AT1G22840.1p transcript_id AT1G22840.1
At1g22840	chr1:008079384	0.0	W/8079384-8079495,8079975-8080112,8080188-8080246	AT1G22840.2 CDS CYTOCHROME C-1 [TAIR10] CDS gene_syn APOCYTOCHROME C-A, ATCYTC-A, CYTC-1, CYTOCHROME C-1, CYTOCHROME C-A, F19G10.20, F19G10_20 gene CYTC-1 function Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers. go_component plasma membrane|GO:0005886|17151019|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_process cell proliferation|GO:0008283|16113211|TAS go_function copper ion binding|GO:0005507|20018591|IDA go_function electron carrier activity|GO:0009055||ISS product CYTOCHROME C-1 note CYTOCHROME C-1 (CYTC-1); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: cell proliferation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: cytochrome c-2 (TAIR:AT4G10040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22840.2p transcript_id AT1G22840.2 protein_id AT1G22840.2p transcript_id AT1G22840.2
At1g22850	chr1:008080671	0.0	C/8080671-8080718,8080915-8081025,8081395-8081461,8081700-8081923,8082014-8082106,8082204-8082256,8082378-8082816	AT1G22850.1 CDS SNARE associated Golgi protein family [TAIR10] CDS gene_syn F19G10.23 go_component chloroplast|GO:0009507|18431481|IDA go_process biological_process|GO:0008150||ND product SNARE associated Golgi protein family note SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G03260.1); Has 4604 Blast hits to 4604 proteins in 1169 species: Archae - 23; Bacteria - 2889; Metazoa - 197; Fungi - 87; Plants - 283; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink). protein_id AT1G22850.1p transcript_id AT1G22850.1 protein_id AT1G22850.1p transcript_id AT1G22850.1
AT1G22850	chr1:008081181	0.0	C/8081181-8081201,8081395-8081461,8081700-8081923,8082014-8082106,8082204-8082256,8082378-8082816	AT1G22850.2 AT1G22850.2 CDS SNARE associated Golgi protein family
At1g22860	chr1:008083400	0.0	W/8083400-8084461,8084562-8084837,8085034-8085230,8085345-8085486,8086015-8086290,8086394-8086466,8086913-8086961,8087108-8087396,8087584-8087639,8087775-8087843,8087939-8088050,8088168-8088257,8088475-8088645,8088775-8088867	AT1G22860.1 CDS Vacuolar sorting protein 39 [TAIR10] CDS gene_syn F19G10.18, F19G10_18 go_function small GTPase regulator activity|GO:0005083||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Vacuolar sorting protein 39 note Vacuolar sorting protein 39; FUNCTIONS IN: small GTPase regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Citron-like (InterPro:IPR001180), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (InterPro:IPR019452), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (InterPro:IPR019453); Has 401 Blast hits to 372 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 168; Fungi - 105; Plants - 74; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). protein_id AT1G22860.1p transcript_id AT1G22860.1 protein_id AT1G22860.1p transcript_id AT1G22860.1
AT1G22870	chr1:008089501	0.0	W/8089501-8089992,8090062-8090166,8090246-8090353,8090460-8090642,8090767-8090893,8090994-8091055,8091152-8091238,8091349-8091435,8091741-8091854,8092288-8092416,8092611-8092673,8092780-8092941,8093039-8093157,8093270-8093838,8093931-8093977	AT1G22870.4 AT1G22870.4 CDS Protein kinase family protein with ARM repeat domain
At1g22870	chr1:008089501	0.0	W/8089501-8089992,8090062-8090166,8090246-8090353,8090460-8090642,8090767-8090893,8090994-8091055,8091152-8091238,8091349-8091435,8091741-8091854,8092288-8092416,8092611-8092673,8092780-8092941,8093039-8093157,8093270-8094173	AT1G22870.1 CDS Protein kinase family protein with ARM repeat domain [TAIR10] CDS gene_syn F19G10.17, F19G10_17 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function binding|GO:0005488||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product Protein kinase family protein with ARM repeat domain note Protein kinase family protein with ARM repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-like helical (InterPro:IPR011989), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-type fold (InterPro:IPR016024), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G71410.1); Has 26365 Blast hits to 24990 proteins in 1293 species: Archae - 12; Bacteria - 3236; Metazoa - 8918; Fungi - 4021; Plants - 3829; Viruses - 24; Other Eukaryotes - 6325 (source: NCBI BLink). protein_id AT1G22870.1p transcript_id AT1G22870.1 protein_id AT1G22870.1p transcript_id AT1G22870.1
AT1G22870	chr1:008090065	0.0	W/8090065-8090166,8090246-8090353,8090460-8090642,8090767-8090893,8090994-8091055,8091152-8091238,8091349-8091435,8091741-8091854,8092288-8092416,8092611-8092673,8092780-8092941,8093039-8093157,8093270-8094173	AT1G22870.3 AT1G22870.3 CDS Protein kinase family protein with ARM repeat domain
AT1G22870	chr1:008090316	0.0	W/8090316-8090357,8090460-8090642,8090767-8090893,8090994-8091055,8091152-8091238,8091349-8091435,8091741-8091854,8092288-8092416,8092611-8092673,8092780-8092941,8093039-8093157,8093270-8094173	AT1G22870.2 AT1G22870.2 CDS Protein kinase family protein with ARM repeat domain
At1g22880	chr1:008095770	0.0	W/8095770-8095964,8096046-8096549,8096637-8096786,8096865-8096976,8097046-8097539	AT1G22880.1 CDS cellulase 5 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA CELLULASE 5, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ATCEL5, ATGH9B4, CEL5, F19G10.16, F19G10_16, cellulase 5 gene CEL5 go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product cellulase 5 note cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 1763 Blast hits to 1753 proteins in 255 species: Archae - 2; Bacteria - 605; Metazoa - 186; Fungi - 17; Plants - 916; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). protein_id AT1G22880.1p transcript_id AT1G22880.1 protein_id AT1G22880.1p transcript_id AT1G22880.1
AT1G22880	chr1:008095770	0.0	W/8095770-8095964,8096046-8096549,8096637-8096786,8096865-8097029	AT1G22880.3 AT1G22880.3 CDS cellulase 5
At1g22880	chr1:008096103	0.0	W/8096103-8096549,8096637-8096786,8096865-8096976,8097046-8097539	AT1G22880.2 CDS cellulase 5 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA CELLULASE 5, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ATCEL5, ATGH9B4, CEL5, F19G10.16, F19G10_16, cellulase 5 gene CEL5 go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product cellulase 5 note cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22880.2p transcript_id AT1G22880.2 protein_id AT1G22880.2p transcript_id AT1G22880.2
At1g22882	chr1:008099150	0.0	W/8099150-8099303,8099392-8101220	AT1G22882.1 CDS Galactose-binding protein [TAIR10] CDS go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose-binding protein note Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G71360.1); Has 2190 Blast hits to 1928 proteins in 337 species: Archae - 60; Bacteria - 185; Metazoa - 803; Fungi - 277; Plants - 164; Viruses - 19; Other Eukaryotes - 682 (source: NCBI BLink). protein_id AT1G22882.1p transcript_id AT1G22882.1 protein_id AT1G22882.1p transcript_id AT1G22882.1
At1g22885	chr1:008101608	0.0	W/8101608-8101713,8102030-8102133	AT1G22885.2 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22885.2p transcript_id AT1G22885.2 protein_id AT1G22885.2p transcript_id AT1G22885.2
At1g22885	chr1:008101608	0.0	W/8101608-8101713,8102033-8102133	AT1G22885.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22885.1p transcript_id AT1G22885.1 protein_id AT1G22885.1p transcript_id AT1G22885.1
At1g22890	chr1:008102851	0.0	W/8102851-8102956,8103113-8103228	AT1G22890.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F19G10.22, F19G10_22 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 17 Blast hits to 17 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22890.1p transcript_id AT1G22890.1 protein_id AT1G22890.1p transcript_id AT1G22890.1
At1g22900	chr1:008103910	0.0	C/8103910-8104491	AT1G22900.1 CDS Disease resistance-responsive (dirigent-like protein) family protein [TAIR10] CDS gene_syn F19G10.14, F19G10_14 go_component endomembrane system|GO:0012505||IEA go_process defense response|GO:0006952||ISS go_function molecular_function|GO:0003674||ND product Disease resistance-responsive (dirigent-like protein) family protein note Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT5G42500.1); Has 955 Blast hits to 954 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 955; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22900.1p transcript_id AT1G22900.1 protein_id AT1G22900.1p transcript_id AT1G22900.1
At1g22910	chr1:008105808	0.0	W/8105808-8105981,8106106-8106238,8106534-8106660,8107108-8107147,8107291-8107519,8107593-8107618	AT1G22910.2 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F19G10.13, F19G10_13 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G33470.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22910.2p transcript_id AT1G22910.2 protein_id AT1G22910.2p transcript_id AT1G22910.2
At1g22910	chr1:008105808	0.0	W/8105808-8105981,8106106-8106238,8106534-8106660,8107108-8107147,8107291-8107519,8107613-8107659	AT1G22910.1 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F19G10.13, F19G10_13 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G33470.2); Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22910.1p transcript_id AT1G22910.1 protein_id AT1G22910.1p transcript_id AT1G22910.1
At1g22910	chr1:008105808	0.0	W/8105808-8105981,8106106-8106238,8106534-8106660,8107108-8107147,8107291-8107523,8107613-8107949	AT1G22910.3 CDS RNA-binding (RRM/RBD/RNP motifs) family protein [TAIR10] CDS gene_syn F19G10.13, F19G10_13 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G33470.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22910.3p transcript_id AT1G22910.3 protein_id AT1G22910.3p transcript_id AT1G22910.3
AT1G22910	chr1:008106085	0.0	W/8106085-8106238,8106534-8106660,8107108-8107147,8107291-8107519,8107613-8107659	AT1G22910.4 AT1G22910.4 CDS RNA-binding (RRM/RBD/RNP motifs) family protein
At1g22920	chr1:008109882	0.0	C/8109882-8109971,8110070-8110147,8110674-8110759,8110863-8111010,8111097-8111378,8111506-8111895	AT1G22920.1 CDS COP9 signalosome 5A [TAIR10] CDS gene_syn AJH1, ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A, CSN5, CSN5A, F19G10.12, F19G10_12, JAB1, PUTATIVE JUN KINASE ACTIVATOR gene CSN5A function AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. go_component signalosome|GO:0008180|11019806|TAS go_component signalosome|GO:0008180|9707402|IPI go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP go_process protein deneddylation|GO:0000338|12724534|TAS go_process photomorphogenesis|GO:0009640|11019806|TAS go_process response to auxin stimulus|GO:0009733|15923347|IGI go_process specification of floral organ identity|GO:0010093|12724534|IMP go_process negative regulation of photomorphogenesis|GO:0010100|15923347|IGI go_process signalosome assembly|GO:0010387|17307927|IMP go_process cullin deneddylation|GO:0010388|17307927|IMP go_function molecular_function|GO:0003674||ND product COP9 signalosome 5A note COP9 signalosome 5A (CSN5A); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 1314 Blast hits to 1313 proteins in 252 species: Archae - 0; Bacteria - 4; Metazoa - 460; Fungi - 400; Plants - 277; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink). protein_id AT1G22920.1p transcript_id AT1G22920.1 protein_id AT1G22920.1p transcript_id AT1G22920.1
At1g22920	chr1:008109998	0.0	C/8109998-8110147,8110674-8110759,8110863-8111010,8111097-8111378,8111506-8111895	AT1G22920.2 CDS COP9 signalosome 5A [TAIR10] CDS gene_syn AJH1, ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A, CSN5, CSN5A, F19G10.12, F19G10_12, JAB1, PUTATIVE JUN KINASE ACTIVATOR gene CSN5A function AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. go_component signalosome|GO:0008180|11019806|TAS go_component signalosome|GO:0008180|9707402|IPI go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP go_process protein deneddylation|GO:0000338|12724534|TAS go_process photomorphogenesis|GO:0009640|11019806|TAS go_process response to auxin stimulus|GO:0009733|15923347|IGI go_process specification of floral organ identity|GO:0010093|12724534|IMP go_process negative regulation of photomorphogenesis|GO:0010100|15923347|IGI go_process signalosome assembly|GO:0010387|17307927|IMP go_process cullin deneddylation|GO:0010388|17307927|IMP go_function molecular_function|GO:0003674||ND product COP9 signalosome 5A note COP9 signalosome 5A (CSN5A); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G22920.2p transcript_id AT1G22920.2 protein_id AT1G22920.2p transcript_id AT1G22920.2
At1g22930	chr1:008117521	0.0	W/8117521-8117709,8117829-8117947,8118024-8118468,8118554-8118669,8118752-8119505,8119584-8120012,8120111-8120299,8120389-8120616,8120750-8121068,8121163-8121343,8121428-8121854	AT1G22930.1 CDS T-complex protein 11 [TAIR10] CDS gene_syn F19G10.11, F19G10_11 go_process biological_process|GO:0008150||ND product T-complex protein 11 note T-complex protein 11; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT4G09150.1); Has 9929 Blast hits to 7090 proteins in 817 species: Archae - 19; Bacteria - 1454; Metazoa - 4175; Fungi - 699; Plants - 382; Viruses - 14; Other Eukaryotes - 3186 (source: NCBI BLink). protein_id AT1G22930.1p transcript_id AT1G22930.1 protein_id AT1G22930.1p transcript_id AT1G22930.1
At1g22930	chr1:008118049	0.0	W/8118049-8118468,8118554-8118669,8118752-8119505,8119584-8120012,8120111-8120299,8120389-8120616,8120750-8121068,8121163-8121343,8121428-8121854	AT1G22930.2 CDS T-complex protein 11 [TAIR10] CDS gene_syn F19G10.11, F19G10_11 go_process biological_process|GO:0008150||ND product T-complex protein 11 note T-complex protein 11; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT4G09150.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G22930.2p transcript_id AT1G22930.2 protein_id AT1G22930.2p transcript_id AT1G22930.2
At1g22940	chr1:008122384	0.0	W/8122384-8122689,8122766-8122841,8122924-8122999,8123091-8123225,8123445-8123509,8123617-8123744,8124035-8124288,8124380-8124908	AT1G22940.1 CDS thiamin biosynthesis protein, putative [TAIR10] CDS gene_syn F19G10.10, F19G10_10, TH-1, TH1, THIAMINE REQUIRING 1, THIAMINEE, THIE gene TH1 function Encodes a bifunctional enzyme required for thiamine (vitamin B1) biosynthesis. TH1 can phosphorylate HMP-P to produce HMP-PP, the pyrimidine heterocyclic subunit of thiamine. TH1 also catalyzes the condensation of HMP-PP and HET to form thiamine monophosphate (TMP). TH1 also appears capable of phosphorylating HMP based on E.coli mutant complementation assays. th1 mutants are thiamine auxotrophs that die as seedlings on unsupplemented media. go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast|GO:0009507|17174261|IDA go_process thiamin biosynthetic process|GO:0009228|17174261|IMP go_function thiamin-phosphate diphosphorylase activity|GO:0004789|16666289|IDA go_function thiamin-phosphate diphosphorylase activity|GO:0004789|17174261|IGI go_function hydroxymethylpyrimidine kinase activity|GO:0008902|17174261|IGI go_function phosphomethylpyrimidine kinase activity|GO:0008972|17174261|IGI product thiamin biosynthesis protein, putative note THIAMINE REQUIRING 1 (TH1); FUNCTIONS IN: phosphomethylpyrimidine kinase activity, thiamin-phosphate diphosphorylase activity, hydroxymethylpyrimidine kinase activity; INVOLVED IN: thiamin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), Phosphomethylpyrimidine kinase type-2 (InterPro:IPR004399), Aldolase-type TIM barrel (InterPro:IPR013785), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); Has 15989 Blast hits to 15891 proteins in 2548 species: Archae - 338; Bacteria - 12149; Metazoa - 165; Fungi - 331; Plants - 107; Viruses - 0; Other Eukaryotes - 2899 (source: NCBI BLink). protein_id AT1G22940.1p transcript_id AT1G22940.1 protein_id AT1G22940.1p transcript_id AT1G22940.1
At1g22950	chr1:008125291	0.0	C/8125291-8125356,8125447-8125558,8125641-8125759,8125838-8125962,8126047-8126133,8126223-8126373,8126459-8126635,8126727-8126774,8126860-8127168	AT1G22950.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F19G10.24, F19G10_24 go_process oxidation reduction|GO:0055114||IEA go_function iron ion binding|GO:0005506||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|GO:0016705||IEA go_function L-ascorbic acid binding|GO:0031418||IEA go_component cellular_component|GO:0005575||ND product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G18210.2); Has 444 Blast hits to 443 proteins in 76 species: Archae - 0; Bacteria - 16; Metazoa - 288; Fungi - 0; Plants - 94; Viruses - 3; Other Eukaryotes - 43 (source: NCBI BLink). protein_id AT1G22950.1p transcript_id AT1G22950.1 protein_id AT1G22950.1p transcript_id AT1G22950.1
At1g22960	chr1:008128086	0.0	C/8128086-8130242	AT1G22960.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F19G10.9, F19G10_9 product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 58924 Blast hits to 14815 proteins in 307 species: Archae - 4; Bacteria - 65; Metazoa - 926; Fungi - 1075; Plants - 54939; Viruses - 0; Other Eukaryotes - 1915 (source: NCBI BLink). protein_id AT1G22960.1p transcript_id AT1G22960.1 protein_id AT1G22960.1p transcript_id AT1G22960.1
AT1G22960	chr1:008128086	0.0	C/8128086-8130242	AT1G22960.2 AT1G22960.2 CDS Pentatricopeptide repeat (PPR) superfamily protein
AT1G22970	chr1:008130840	0.0	C/8130840-8131534,8131654-8131858	AT1G22970.2 AT1G22970.2 CDS cyclin-D1-binding protein
AT1G22970	chr1:008130840	0.0	C/8130840-8131534,8131654-8131858	AT1G22970.4 AT1G22970.4 CDS cyclin-D1-binding protein
At1g22970	chr1:008130840	0.0	C/8130840-8131534,8131654-8131863,8131946-8132039,8132125-8132199	AT1G22970.1 CDS cyclin-D1-binding protein [TAIR10] CDS gene_syn F19G10.8, F19G10_8 product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71150.1); Has 134 Blast hits to 132 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 10; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G22970.1p transcript_id AT1G22970.1 protein_id AT1G22970.1p transcript_id AT1G22970.1
AT1G22970	chr1:008130840	0.0	C/8130840-8131534,8131654-8131863,8131946-8132057	AT1G22970.3 AT1G22970.3 CDS cyclin-D1-binding protein
At1g22980	chr1:008132649	0.0	C/8132649-8132690,8132775-8133433,8133604-8133813,8133907-8134000,8134091-8134165	AT1G22980.1 CDS Grap2/cyclin-D-interacting protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22970.1); Has 52 Blast hits to 50 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22980.1p transcript_id AT1G22980.1 protein_id AT1G22980.1p transcript_id AT1G22980.1
AT1G22980	chr1:008132724	0.0	C/8132724-8133433,8133604-8133813,8133907-8134000,8134091-8134165	AT1G22980.2 AT1G22980.2 CDS Grap2/cyclin-D-interacting protein
At1g22985	chr1:008135346	0.0	C/8135346-8135825	AT1G22985.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS function encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Integrase-type DNA-binding superfamily protein note Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71130.1); Has 5644 Blast hits to 5509 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5631; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G22985.1p transcript_id AT1G22985.1 protein_id AT1G22985.1p transcript_id AT1G22985.1
At1g22990	chr1:008139221	0.0	W/8139221-8139307,8139396-8139471,8139750-8140045	AT1G22990.1 CDS Heavy metal transport/detoxification superfamily protein [TAIR10] CDS gene_syn F19G10.25 go_process metal ion transport|GO:0030001||IEA go_function metal ion binding|GO:0046872||IEA go_component cellular_component|GO:0005575||ND go_function metal ion binding|GO:0046872||ISS product Heavy metal transport/detoxification superfamily protein note Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G22990.1p transcript_id AT1G22990.1 protein_id AT1G22990.1p transcript_id AT1G22990.1
AT1G22990	chr1:008139221	0.0	W/8139221-8139307,8139411-8139471,8139750-8140045	AT1G22990.2 AT1G22990.2 CDS Heavy metal transport/detoxification superfamily protein
AT1G23000	chr1:008143342	0.0	W/8143342-8143519,8143612-8143652,8143741-8143816,8143904-8144865	AT1G23000.2 AT1G23000.2 CDS Heavy metal transport/detoxification superfamily protein
At1g23000	chr1:008143614	0.0	W/8143614-8143652,8143741-8143816,8143904-8144865	AT1G23000.1 CDS Heavy metal transport/detoxification superfamily protein [TAIR10] CDS gene_syn F19G10.6, F19G10_6 go_process metal ion transport|GO:0030001||IEA go_function metal ion binding|GO:0046872||IEA go_component cellular_component|GO:0005575||ND go_function metal ion binding|GO:0046872||ISS product Heavy metal transport/detoxification superfamily protein note Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G06130.1); Has 2286 Blast hits to 2008 proteins in 133 species: Archae - 0; Bacteria - 60; Metazoa - 111; Fungi - 41; Plants - 1285; Viruses - 0; Other Eukaryotes - 789 (source: NCBI BLink). protein_id AT1G23000.1p transcript_id AT1G23000.1 protein_id AT1G23000.1p transcript_id AT1G23000.1
At1g23010	chr1:008147353	0.0	W/8147353-8147583,8147906-8149030,8149104-8149439,8149527-8149580	AT1G23010.1 CDS Cupredoxin superfamily protein [TAIR10] CDS gene_syn F19G10.5, F19G10_5, LPR1, Low Phosphate Root1 gene LPR1 function Encodes a protein with multicopper oxidase activity. Located in ER. Function together with LPR2 (AT1G71040) and a P5-type ATPase (At5g23630/PDR2) in a common pathway that adjusts root meristem activity to Pi (inorganic phosphate) availability. go_component endoplasmic reticulum|GO:0005783|19666499|IDA go_process meristem maintenance|GO:0010073|19666499|IGI go_process cellular response to phosphate starvation|GO:0016036|17496893|IMP go_process cellular response to phosphate starvation|GO:0016036|19666499|IGI go_process cellular response to phosphate starvation|GO:0016036|20071375|IMP go_process response to karrikin|GO:0080167|20351290|IEP go_function copper ion binding|GO:0005507||ISS go_function oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor|GO:0016682|17496893|IDA product Cupredoxin superfamily protein note Low Phosphate Root1 (LPR1); CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G71040.1); Has 3143 Blast hits to 2693 proteins in 814 species: Archae - 12; Bacteria - 2669; Metazoa - 8; Fungi - 64; Plants - 261; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). protein_id AT1G23010.1p transcript_id AT1G23010.1 protein_id AT1G23010.1p transcript_id AT1G23010.1
AT1G23020	chr1:008150187	0.0	C/8150187-8150326,8150429-8151081,8151173-8151416,8151500-8151827,8152034-8152268,8152670-8152861,8152968-8153070,8153180-8153357	AT1G23020.7 AT1G23020.7 CDS ferric reduction oxidase 3
At1g23020	chr1:008150187	0.0	C/8150187-8150326,8150429-8151081,8151173-8151416,8151500-8151827,8152034-8152268,8152670-8152870,8152968-8153070,8153180-8153347,8153452-8153530	AT1G23020.1 CDS ferric reduction oxidase 3 [TAIR10] CDS gene_syn ATFRO3, F19G10.4, F19G10_4, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 gene FRO3 function Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon. go_component integral to membrane|GO:0016021||IEA go_process oxidation reduction|GO:0055114||IEA go_component membrane|GO:0016020||ISS go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA go_function ferric-chelate reductase activity|GO:0000293||ISS product ferric reduction oxidase 3 note ferric reduction oxidase 3 (FRO3); FUNCTIONS IN: ferric-chelate reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 1 (TAIR:AT1G01590.1); Has 2651 Blast hits to 2646 proteins in 370 species: Archae - 2; Bacteria - 274; Metazoa - 566; Fungi - 1157; Plants - 480; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink). protein_id AT1G23020.1p transcript_id AT1G23020.1 protein_id AT1G23020.1p transcript_id AT1G23020.1
AT1G23020	chr1:008150187	0.0	C/8150187-8150326,8150429-8151081,8151173-8151416,8151500-8151827,8152034-8152268,8152670-8152870,8152968-8153070,8153180-8153347,8153452-8153530	AT1G23020.5 AT1G23020.5 CDS ferric reduction oxidase 3
AT1G23020	chr1:008150187	0.0	C/8150187-8150326,8150429-8151081,8151173-8151416,8151500-8151827,8152034-8152268,8152670-8152870,8152968-8153070,8153180-8153357	AT1G23020.3 AT1G23020.3 CDS ferric reduction oxidase 3
AT1G23020	chr1:008150187	0.0	C/8150187-8150326,8150429-8151081,8151173-8151416,8151500-8151827,8152034-8152268,8152670-8152870,8152968-8153070,8153180-8153357	AT1G23020.4 AT1G23020.4 CDS ferric reduction oxidase 3
At1g23020	chr1:008150187	0.0	C/8150187-8150326,8150429-8151081,8151173-8151416,8151500-8151827,8152034-8152268,8152670-8152873,8152968-8153070,8153180-8153347,8153452-8153530	AT1G23020.2 CDS ferric reduction oxidase 3 [TAIR10] CDS gene_syn ATFRO3, F19G10.4, F19G10_4, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 gene FRO3 function Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon. go_component integral to membrane|GO:0016021||IEA go_process oxidation reduction|GO:0055114||IEA go_component membrane|GO:0016020||ISS go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA go_function ferric-chelate reductase activity|GO:0000293||ISS product ferric reduction oxidase 3 note ferric reduction oxidase 3 (FRO3); FUNCTIONS IN: ferric-chelate reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 1 (TAIR:AT1G01590.1). protein_id AT1G23020.2p transcript_id AT1G23020.2 protein_id AT1G23020.2p transcript_id AT1G23020.2
AT1G23020	chr1:008150187	0.0	C/8150187-8150326,8150429-8151081,8151173-8151416,8151500-8151827,8152034-8152268,8152670-8152873,8152968-8153070,8153180-8153357	AT1G23020.6 AT1G23020.6 CDS ferric reduction oxidase 3
At1g23030	chr1:008156745	0.0	W/8156745-8157023,8157200-8157712,8157796-8158842	AT1G23030.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn F19G10.3, F19G10_3 go_component ubiquitin ligase complex|GO:0000151||IEA go_function ubiquitin-protein ligase activity|GO:0004842||IEA go_function binding|GO:0005488||IEA go_process response to chitin|GO:0010200|17722694|IEP product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G71020.1); Has 7493 Blast hits to 5002 proteins in 288 species: Archae - 0; Bacteria - 26; Metazoa - 2087; Fungi - 726; Plants - 3867; Viruses - 3; Other Eukaryotes - 784 (source: NCBI BLink). protein_id AT1G23030.1p transcript_id AT1G23030.1 protein_id AT1G23030.1p transcript_id AT1G23030.1
At1g23037	chr1:008162414	0.0	W/8162414-8162526,8162774-8163149	AT1G23037.1 CDS F-box associated ubiquitination effector family protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box associated ubiquitination effector family protein note F-box associated ubiquitination effector family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G52320.1); Has 71 Blast hits to 69 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23037.1p transcript_id AT1G23037.1 protein_id AT1G23037.1p transcript_id AT1G23037.1
At1g23040	chr1:008165025	0.0	W/8165025-8165459	AT1G23040.1 CDS hydroxyproline-rich glycoprotein family protein [TAIR10] CDS gene_syn F19G10.19 go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G70990.1); Has 25412 Blast hits to 10574 proteins in 716 species: Archae - 40; Bacteria - 2873; Metazoa - 9053; Fungi - 1818; Plants - 6806; Viruses - 1343; Other Eukaryotes - 3479 (source: NCBI BLink). protein_id AT1G23040.1p transcript_id AT1G23040.1 protein_id AT1G23040.1p transcript_id AT1G23040.1
AT1G23040	chr1:008165025	0.0	W/8165025-8165459	AT1G23040.2 AT1G23040.2 CDS hydroxyproline-rich glycoprotein family protein
AT1G23040	chr1:008165025	0.0	W/8165025-8165459	AT1G23040.3 AT1G23040.3 CDS hydroxyproline-rich glycoprotein family protein
At1g23052	chr1:008168443	0.0	C/8168443-8169267	AT1G23052.1 [TAIR10] ncRNA product other RNA transcript_id AT1G23052.1
At1g23050	chr1:008168631	0.0	W/8168631-8169116	AT1G23050.1 CDS hydroxyproline-rich glycoprotein family protein [TAIR10] CDS gene_syn F19G10.1 go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G70985.1); Has 4980 Blast hits to 3037 proteins in 323 species: Archae - 0; Bacteria - 354; Metazoa - 1692; Fungi - 499; Plants - 1659; Viruses - 207; Other Eukaryotes - 569 (source: NCBI BLink). protein_id AT1G23050.1p transcript_id AT1G23050.1 protein_id AT1G23050.1p transcript_id AT1G23050.1
At1g23060	chr1:008170946	0.0	C/8170946-8171272,8171364-8171532,8171619-8172043	AT1G23060.2 CDS hypothetical protein [TAIR10] CDS gene_syn T26J12.16, T26J12_16 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT1G70950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23060.2p transcript_id AT1G23060.2 protein_id AT1G23060.2p transcript_id AT1G23060.2
AT1G23060	chr1:008170946	0.0	C/8170946-8171272,8171364-8171532,8171619-8172043	AT1G23060.3 AT1G23060.3 CDS hypothetical protein
AT1G23060	chr1:008170946	0.0	C/8170946-8171272,8171364-8171532,8171619-8172043	AT1G23060.5 AT1G23060.5 CDS hypothetical protein
At1g23060	chr1:008170946	0.0	C/8170946-8171272,8171364-8171532,8171619-8172184,8172698-8172739	AT1G23060.1 CDS hypothetical protein [TAIR10] CDS gene_syn T26J12.16, T26J12_16 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT1G70950.1); Has 449 Blast hits to 419 proteins in 98 species: Archae - 0; Bacteria - 40; Metazoa - 139; Fungi - 21; Plants - 158; Viruses - 3; Other Eukaryotes - 88 (source: NCBI BLink). protein_id AT1G23060.1p transcript_id AT1G23060.1 protein_id AT1G23060.1p transcript_id AT1G23060.1
AT1G23060	chr1:008170946	0.0	C/8170946-8171272,8171364-8171532,8171619-8172184,8172698-8172739	AT1G23060.4 AT1G23060.4 CDS hypothetical protein
At1g23070	chr1:008174011	0.0	C/8174011-8174400,8174522-8174771,8174852-8174940,8175015-8175193,8175280-8175388,8175468-8175524,8175621-8175758	AT1G23070.1 CDS organic solute transporter ostalpha protein (DUF300) [TAIR10] CDS gene_syn T26J12.15, T26J12_15 go_process biological_process|GO:0008150||ND product Protein of unknown function (DUF300) note Protein of unknown function (DUF300); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G38360.2); Has 840 Blast hits to 837 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 190; Plants - 245; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). protein_id AT1G23070.1p transcript_id AT1G23070.1 protein_id AT1G23070.1p transcript_id AT1G23070.1
At1g23074	chr1:008177832	0.0	W/8177832-8177996	AT1G23074.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23074.1p transcript_id AT1G23074.1 protein_id AT1G23074.1p transcript_id AT1G23074.1
At1g23080	chr1:008180768	0.0	C/8180768-8180834,8180926-8181002,8181083-8181240,8181682-8181767,8181858-8182128,8182206-8183406	AT1G23080.1 CDS Auxin efflux carrier family protein [TAIR10] CDS gene_syn ARABIDOPSIS PIN-FORMED 7, ATPIN7, PIN-FORMED 7, PIN7, T26J12.14, T26J12_14 gene PIN7 function Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_component plasma membrane|GO:0005886|16601150|IDA go_process pattern specification process|GO:0007389|15635403|IGI go_process auxin polar transport|GO:0009926|16601150|IMP go_process auxin polar transport|GO:0009926||ISS go_process longitudinal axis specification|GO:0009942|14614497|IMP go_process response to cyclopentenone|GO:0010583|18334669|IEP go_process root development|GO:0048364|15635403|IGI go_function transporter activity|GO:0005215||ISS go_function auxin:hydrogen symporter activity|GO:0009672||ISS go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA product Auxin efflux carrier family protein note PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, pattern specification process, auxin polar transport, longitudinal axis specification; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1748 Blast hits to 1583 proteins in 451 species: Archae - 37; Bacteria - 919; Metazoa - 14; Fungi - 2; Plants - 486; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink). protein_id AT1G23080.1p transcript_id AT1G23080.1 protein_id AT1G23080.1p transcript_id AT1G23080.1
At1g23080	chr1:008180768	0.0	C/8180768-8180834,8180926-8181002,8181083-8181240,8181682-8181767,8181858-8182128,8182218-8183406	AT1G23080.3 CDS Auxin efflux carrier family protein [TAIR10] CDS gene_syn ARABIDOPSIS PIN-FORMED 7, ATPIN7, PIN-FORMED 7, PIN7, T26J12.14, T26J12_14 gene PIN7 function Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_component plasma membrane|GO:0005886|16601150|IDA go_process pattern specification process|GO:0007389|15635403|IGI go_process auxin polar transport|GO:0009926|16601150|IMP go_process auxin polar transport|GO:0009926||ISS go_process longitudinal axis specification|GO:0009942|14614497|IMP go_process response to cyclopentenone|GO:0010583|18334669|IEP go_process root development|GO:0048364|15635403|IGI go_function transporter activity|GO:0005215||ISS go_function auxin:hydrogen symporter activity|GO:0009672||ISS go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA product Auxin efflux carrier family protein note PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, pattern specification process, auxin polar transport, longitudinal axis specification; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1749 Blast hits to 1582 proteins in 451 species: Archae - 37; Bacteria - 920; Metazoa - 12; Fungi - 2; Plants - 486; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink). protein_id AT1G23080.3p transcript_id AT1G23080.3 protein_id AT1G23080.3p transcript_id AT1G23080.3
AT1G23080	chr1:008180768	0.0	C/8180768-8180834,8180926-8181002,8181083-8181240,8181682-8181767,8181858-8182128,8182218-8183406	AT1G23080.4 AT1G23080.4 CDS Auxin efflux carrier family protein
At1g23080	chr1:008181644	0.0	C/8181644-8181767,8181858-8182128,8182218-8183406	AT1G23080.2 CDS Auxin efflux carrier family protein [TAIR10] CDS gene_syn ARABIDOPSIS PIN-FORMED 7, ATPIN7, PIN-FORMED 7, PIN7, T26J12.14, T26J12_14 gene PIN7 function Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_component plasma membrane|GO:0005886|16601150|IDA go_process pattern specification process|GO:0007389|15635403|IGI go_process auxin polar transport|GO:0009926|16601150|IMP go_process auxin polar transport|GO:0009926||ISS go_process longitudinal axis specification|GO:0009942|14614497|IMP go_process response to cyclopentenone|GO:0010583|18334669|IEP go_process root development|GO:0048364|15635403|IGI go_function transporter activity|GO:0005215||ISS go_function auxin:hydrogen symporter activity|GO:0009672||ISS go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA product Auxin efflux carrier family protein note PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, pattern specification process, auxin polar transport, longitudinal axis specification; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 700 Blast hits to 605 proteins in 126 species: Archae - 0; Bacteria - 174; Metazoa - 8; Fungi - 2; Plants - 457; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). protein_id AT1G23080.2p transcript_id AT1G23080.2 protein_id AT1G23080.2p transcript_id AT1G23080.2
AT1G23090	chr1:008185238	0.0	C/8185238-8185390,8185486-8185562,8185728-8185813,8186022-8186626,8186813-8186929,8187017-8187130,8187396-8187461,8187539-8187710,8188248-8188357	AT1G23090.2 AT1G23090.2 CDS sulfate transporter 91
AT1G23090	chr1:008185238	0.0	C/8185238-8185390,8185486-8185562,8185728-8185813,8186022-8186626,8186813-8186929,8187017-8187130,8187396-8187461,8187539-8187710,8188248-8188357	AT1G23090.3 AT1G23090.3 CDS sulfate transporter 91
AT1G23090	chr1:008185238	0.0	C/8185238-8185390,8185486-8185562,8185728-8185813,8186022-8186626,8186813-8186929,8187017-8187130,8187396-8187461,8187539-8187710,8188248-8188357	AT1G23090.4 AT1G23090.4 CDS sulfate transporter 91
At1g23090	chr1:008185238	0.0	C/8185238-8185390,8185486-8185562,8185728-8185813,8186022-8186626,8186813-8186929,8187017-8187130,8187396-8187461,8187539-8187710,8188248-8188455,8188541-8188589,8188706-8188954	AT1G23090.1 CDS sulfate transporter 91 [TAIR10] CDS gene_syn AST91, SULFATE TRANSPORTER, SULTR3;3, T26J12.13, T26J12_13, sulfate transporter 91 gene AST91 function Encodes AST91 mRNA for sulfate transporter. go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process sulfate transport|GO:0008272||IEA go_process transmembrane transport|GO:0055085||IEA go_function sulfate transmembrane transporter activity|GO:0015116||ISS product sulfate transporter 91 note sulfate transporter 91 (AST91); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: sulfate transporter 3;4 (TAIR:AT3G15990.1); Has 10235 Blast hits to 10139 proteins in 1863 species: Archae - 39; Bacteria - 6188; Metazoa - 1155; Fungi - 478; Plants - 559; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink). protein_id AT1G23090.1p transcript_id AT1G23090.1 protein_id AT1G23090.1p transcript_id AT1G23090.1
At1g23100	chr1:008195867	0.0	W/8195867-8195971,8196057-8196196,8196288-8196336	AT1G23100.1 CDS GroES-like family protein [TAIR10] CDS gene_syn T26J12.12, T26J12_12 go_process protein folding|GO:0006457||IEA go_function ATP binding|GO:0005524||IEA go_component mitochondrion|GO:0005739|14671022|IDA product GroES-like family protein note GroES-like family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: chaperonin 10 (TAIR:AT1G14980.1); Has 8300 Blast hits to 8204 proteins in 2528 species: Archae - 1; Bacteria - 5400; Metazoa - 324; Fungi - 119; Plants - 327; Viruses - 2; Other Eukaryotes - 2127 (source: NCBI BLink). protein_id AT1G23100.1p transcript_id AT1G23100.1 protein_id AT1G23100.1p transcript_id AT1G23100.1
At1g23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.1 CDS fold protein [TAIR10] CDS gene_syn T26J12.20, T26J12_20 go_component chloroplast|GO:0009507||IEA go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 59 Blast hits to 59 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23110.1p transcript_id AT1G23110.1 protein_id AT1G23110.1p transcript_id AT1G23110.1
At1g23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.2 CDS fold protein [TAIR10] CDS gene_syn T26J12.20, T26J12_20 go_component chloroplast|GO:0009507||IEA go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23110.2p transcript_id AT1G23110.2 protein_id AT1G23110.2p transcript_id AT1G23110.2
At1g23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.3 CDS fold protein [TAIR10] CDS gene_syn T26J12.20, T26J12_20 go_component chloroplast|GO:0009507||IEA go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23110.3p transcript_id AT1G23110.3 protein_id AT1G23110.3p transcript_id AT1G23110.3
At1g23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.4 CDS fold protein [TAIR10] CDS gene_syn T26J12.20, T26J12_20 go_component chloroplast|GO:0009507||IEA go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1). protein_id AT1G23110.4p transcript_id AT1G23110.4 protein_id AT1G23110.4p transcript_id AT1G23110.4
At1g23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.5 CDS fold protein [TAIR10] CDS gene_syn T26J12.20, T26J12_20 go_component chloroplast|GO:0009507||IEA go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1). protein_id AT1G23110.5p transcript_id AT1G23110.5 protein_id AT1G23110.5p transcript_id AT1G23110.5
AT1G23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.6 AT1G23110.6 CDS fold protein
AT1G23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.7 AT1G23110.7 CDS fold protein
AT1G23120	chr1:008198638	0.0	W/8198638-8198962,8199088-8199359	AT1G23120.2 AT1G23120.2 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein
At1g23120	chr1:008198788	0.0	W/8198788-8198962,8199088-8199359	AT1G23120.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn T26J12.11, T26J12_11 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G70870.1); Has 405 Blast hits to 378 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23120.1p transcript_id AT1G23120.1 protein_id AT1G23120.1p transcript_id AT1G23120.1
At1g23130	chr1:008200434	0.0	W/8200434-8200638,8200720-8200997	AT1G23130.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn T26J12.10, T26J12_10 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP-like protein 31 (TAIR:AT1G70840.1); Has 372 Blast hits to 341 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23130.1p transcript_id AT1G23130.1 protein_id AT1G23130.1p transcript_id AT1G23130.1
At1g23140	chr1:008202362	0.0	C/8202362-8202652,8202762-8202857,8203062-8203172	AT1G23140.1 CDS Calcium-dependent lipid-binding (CaLB domain) family protein [TAIR10] CDS gene_syn T26J12.9, T26J12_9 go_component plasma membrane|GO:0005886|17644812|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Calcium-dependent lipid-binding (CaLB domain) family protein note Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G70810.1); Has 2565 Blast hits to 2253 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 1331; Fungi - 318; Plants - 674; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink). protein_id AT1G23140.1p transcript_id AT1G23140.1 protein_id AT1G23140.1p transcript_id AT1G23140.1
At1g23145	chr1:008203962	0.0	W/8203962-8204255	AT1G23145.1 CDS RALF-like 2 [TAIR10] CDS gene_syn RALF-like 2, RALFL2 gene RALFL2 function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. go_component apoplast|GO:0048046|12611624|ISS go_process cell-cell signaling|GO:0007267|12611624|ISS go_function signal transducer activity|GO:0004871|12611624|TAS product RALF-like 2 note RALF-like 2 (RALFL2); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALF-like 3 (TAIR:AT1G23147.1); Has 41 Blast hits to 41 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23145.1p transcript_id AT1G23145.1 protein_id AT1G23145.1p transcript_id AT1G23145.1
At1g23147	chr1:008205934	0.0	W/8205934-8206206	AT1G23147.1 CDS RALF-like 3 [TAIR10] CDS gene_syn RALF-like 3, RALFL3 gene RALFL3 function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. go_component apoplast|GO:0048046|12611624|ISS go_process cell-cell signaling|GO:0007267|12611624|ISS go_function signal transducer activity|GO:0004871|12611624|TAS product RALF-like 3 note RALF-like 3 (RALFL3); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALF-like 2 (TAIR:AT1G23145.1); Has 37 Blast hits to 37 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23147.1p transcript_id AT1G23147.1 protein_id AT1G23147.1p transcript_id AT1G23147.1
At1g23149	chr1:008206714	0.0	W/8206714-8206869	AT1G23149.1 CDS conserved peptide upstream open reading frame 29 [TAIR10] CDS gene_syn CPuORF29, conserved peptide upstream open reading frame 29 gene CPuORF29 function Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF29 represents a conserved upstream opening reading frame relative to major ORF AT1G23150.1 product conserved peptide upstream open reading frame 29 note conserved peptide upstream open reading frame 29 (CPuORF29); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 28 (TAIR:AT1G70782.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23149.1p transcript_id AT1G23149.1 protein_id AT1G23149.1p transcript_id AT1G23149.1
At1g23150	chr1:008206948	0.0	W/8206948-8207176,8207265-8207461	AT1G23150.1 CDS hypothetical protein [TAIR10] CDS gene_syn T26J12.8, T26J12_8 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70780.1); Has 124 Blast hits to 124 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23150.1p transcript_id AT1G23150.1 protein_id AT1G23150.1p transcript_id AT1G23150.1
At1g23160	chr1:008209232	0.0	W/8209232-8209524,8209677-8209778,8209876-8210657,8210766-8211325	AT1G23160.1 CDS Auxin-responsive GH3 family protein [TAIR10] CDS gene_syn T26J12.7, T26J12_7 go_process response to auxin stimulus|GO:0009733||ISS product Auxin-responsive GH3 family protein note Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13320.1); Has 1394 Blast hits to 1308 proteins in 220 species: Archae - 0; Bacteria - 431; Metazoa - 54; Fungi - 2; Plants - 672; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink). protein_id AT1G23160.1p transcript_id AT1G23160.1 protein_id AT1G23160.1p transcript_id AT1G23160.1
At1g23170	chr1:008212724	0.0	W/8212724-8213230,8213323-8213460,8213571-8213759,8213966-8214103,8214213-8214331,8214410-8214542,8214623-8214752,8214835-8214914,8215005-8215145,8215244-8215516	AT1G23170.2 CDS transmembrane protein (Protein of unknown function DUF2359, transmembrane) [TAIR10] CDS gene_syn T26J12.6, T26J12_6 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function DUF2359, transmembrane note Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2). protein_id AT1G23170.2p transcript_id AT1G23170.2 protein_id AT1G23170.2p transcript_id AT1G23170.2
At1g23170	chr1:008212724	0.0	W/8212724-8213230,8213571-8213759,8213966-8214103,8214213-8214331,8214410-8214542,8214623-8214752,8214835-8214914,8215005-8215145,8215244-8215516	AT1G23170.1 CDS transmembrane protein (Protein of unknown function DUF2359, transmembrane) [TAIR10] CDS gene_syn T26J12.6, T26J12_6 go_component membrane|GO:0016020|17432890|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function DUF2359, transmembrane note Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2); Has 178 Blast hits to 160 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23170.1p transcript_id AT1G23170.1 protein_id AT1G23170.1p transcript_id AT1G23170.1
At1g23180	chr1:008216125	0.0	W/8216125-8216379,8216524-8216883,8216974-8217189,8217408-8218066,8218148-8218244,8218347-8218400,8218481-8218521,8218619-8218809,8218884-8219515	AT1G23180.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn T26J12.19, T26J12_19 go_component chloroplast|GO:0009507|18431481|IDA go_function binding|GO:0005488||IEA go_process biological_process|GO:0008150||ND product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1); Has 2470 Blast hits to 1640 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 613; Fungi - 372; Plants - 1309; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink). protein_id AT1G23180.1p transcript_id AT1G23180.1 protein_id AT1G23180.1p transcript_id AT1G23180.1
AT1G23180	chr1:008216125	0.0	W/8216125-8216379,8216524-8216883,8216974-8217189,8217408-8218066,8218148-8218244,8218347-8218400,8218481-8218521,8218619-8218829	AT1G23180.2 AT1G23180.2 CDS ARM repeat superfamily protein
At1g23190	chr1:008219946	0.0	W/8219946-8220023,8220612-8220693,8220781-8220836,8221190-8221303,8221439-8221501,8221647-8221766,8221853-8221953,8222059-8222118,8222220-8222319,8222413-8222570,8222658-8222753,8222863-8222926,8223013-8223094,8223177-8223355,8223447-8223523,8223634-8223766,8223879-8223995,8224115-8224186	AT1G23190.1 CDS Phosphoglucomutase/phosphomannomutase family protein [TAIR10] CDS gene_syn T26J12.5, T26J12_5 go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|15028209|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function magnesium ion binding|GO:0000287||IEA go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_component cytosol|GO:0005829|18433157|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_process response to cadmium ion|GO:0046686|20005002|IEP go_function phosphoglucomutase activity|GO:0004614||ISS product Phosphoglucomutase/phosphomannomutase family protein note Phosphoglucomutase/phosphomannomutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 7107 Blast hits to 7096 proteins in 2124 species: Archae - 111; Bacteria - 5258; Metazoa - 510; Fungi - 209; Plants - 166; Viruses - 0; Other Eukaryotes - 853 (source: NCBI BLink). protein_id AT1G23190.1p transcript_id AT1G23190.1 protein_id AT1G23190.1p transcript_id AT1G23190.1
At1g23200	chr1:008227236	0.0	W/8227236-8228235,8228736-8229400	AT1G23200.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily [TAIR10] CDS gene_syn F26F24.2 go_component cell wall|GO:0005618||IEA go_component endomembrane system|GO:0012505||IEA go_process cell wall modification|GO:0042545||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_component plant-type cell wall|GO:0009505||ISS go_function pectinesterase activity|GO:0030599||ISS product Plant invertase/pectin methylesterase inhibitor superfamily note Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 3098 Blast hits to 3048 proteins in 474 species: Archae - 14; Bacteria - 863; Metazoa - 1; Fungi - 203; Plants - 1990; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). protein_id AT1G23200.1p transcript_id AT1G23200.1 protein_id AT1G23200.1p transcript_id AT1G23200.1
AT1G23201	chr1:008230173	0.0	W/8230173-8230775	AT1G23201.2 AT1G23201.2 CDS GCK domain protein
At1g23201	chr1:008230209	0.0	W/8230209-8230775	AT1G23201.1 CDS GCK domain protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: GCK domain-containing protein (TAIR:AT5G02210.1); Has 106 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23201.1p transcript_id AT1G23201.1 protein_id AT1G23201.1p transcript_id AT1G23201.1
At1g23205	chr1:008234234	0.0	C/8234234-8234851	AT1G23205.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily protein [TAIR10] CDS gene_syn F26F24.4, F26F24_4 go_component endomembrane system|GO:0012505||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_process biological_process|GO:0008150||ND go_function pectinesterase inhibitor activity|GO:0046910||ISS product Plant invertase/pectin methylesterase inhibitor superfamily protein note Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G70720.1); Has 800 Blast hits to 793 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 800; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23205.1p transcript_id AT1G23205.1 protein_id AT1G23205.1p transcript_id AT1G23205.1
At1g23210	chr1:008240174	0.0	W/8240174-8240788,8241118-8241210,8241283-8241720,8241806-8242129	AT1G23210.1 CDS glycosyl hydrolase 9B6 [TAIR10] CDS gene_syn AtGH9B6, F26F24.6, F26F24_6, GH9B6, glycosyl hydrolase 9B6 gene GH9B6 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product glycosyl hydrolase 9B6 note glycosyl hydrolase 9B6 (GH9B6); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B1 (TAIR:AT1G70710.1); Has 1742 Blast hits to 1728 proteins in 256 species: Archae - 2; Bacteria - 580; Metazoa - 187; Fungi - 17; Plants - 918; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). protein_id AT1G23210.1p transcript_id AT1G23210.1 protein_id AT1G23210.1p transcript_id AT1G23210.1
At1g23220	chr1:008242614	0.0	W/8242614-8242844,8243978-8244136	AT1G23220.1 CDS Dynein light chain type 1 family protein [TAIR10] CDS gene_syn F26F24.7, F26F24_7 go_component microtubule associated complex|GO:0005875||IEA go_process microtubule-based process|GO:0007017||IEA go_function microtubule motor activity|GO:0003777||IEA go_component microtubule associated complex|GO:0005875||ISS go_process microtubule-based process|GO:0007017||ISS go_function microtubule motor activity|GO:0003777||ISS product Dynein light chain type 1 family protein note Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT5G20110.1); Has 1246 Blast hits to 1246 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 642; Fungi - 104; Plants - 252; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink). protein_id AT1G23220.1p transcript_id AT1G23220.1 protein_id AT1G23220.1p transcript_id AT1G23220.1
AT1G23230	chr1:008244481	0.0	W/8244481-8244588,8244669-8244712,8244799-8244898,8244986-8245924,8246061-8246298,8246563-8246780,8246890-8247091,8247189-8247460,8247676-8247759,8247855-8247949,8248097-8248259,8248353-8248769,8248853-8248966,8249047-8249172,8249248-8249396,8249642-8249882,8250061-8250847,8250920-8251101,8251347-8251450,8251534-8251741	AT1G23230.3 AT1G23230.3 CDS mediator of RNA polymerase II transcription subunit
At1g23230	chr1:008244481	0.0	W/8244481-8244588,8244669-8244712,8244799-8244898,8244986-8245924,8246061-8246298,8246563-8246780,8246890-8247091,8247189-8247460,8247676-8247759,8247867-8247949,8248097-8248259,8248353-8248769,8248853-8248966,8249047-8249172,8249248-8249396,8249642-8249882,8250061-8250847,8250920-8251101,8251347-8251450,8251534-8251741	AT1G23230.2 CDS mediator of RNA polymerase II transcription subunit [TAIR10] CDS gene_syn F26F24.8, F26F24_8 go_process response to salt stress|GO:0009651|11351099|IEP go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). protein_id AT1G23230.2p transcript_id AT1G23230.2 protein_id AT1G23230.2p transcript_id AT1G23230.2
At1g23230	chr1:008244481	0.0	W/8244481-8244588,8244669-8244712,8244799-8244898,8244986-8245924,8246061-8246303,8246511-8246780,8246890-8247091,8247189-8247460,8247676-8247759,8247855-8247949,8248097-8248259,8248353-8248769,8248853-8248966,8249047-8249172,8249248-8249396,8249642-8249882,8250061-8250847,8250920-8251101,8251347-8251450,8251534-8251741	AT1G23230.1 CDS mediator of RNA polymerase II transcription subunit [TAIR10] CDS gene_syn F26F24.8, F26F24_8 go_process response to salt stress|GO:0009651|11351099|IEP go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G23230.1p transcript_id AT1G23230.1 protein_id AT1G23230.1p transcript_id AT1G23230.1
At1g23240	chr1:008252894	0.0	C/8252894-8253062,8253198-8253323,8253454-8253548,8253818-8253903,8254051-8254129	AT1G23240.3 CDS Caleosin-related family protein [TAIR10] CDS gene_syn F26F24.33, F26F24_33 go_component extracellular region|GO:0005576|11431566|IDA go_function calcium ion binding|GO:0005509||ISS go_function lipase activity|GO:0016298|11431566|ISS product Caleosin-related family protein note Caleosin-related family protein; FUNCTIONS IN: lipase activity, calcium ion binding; LOCATED IN: extracellular region; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23240.3p transcript_id AT1G23240.3 protein_id AT1G23240.3p transcript_id AT1G23240.3
At1g23240	chr1:008252894	0.0	C/8252894-8253062,8253198-8253323,8253454-8253548,8253818-8253903,8254051-8254152,8254440-8254494	AT1G23240.1 CDS Caleosin-related family protein [TAIR10] CDS gene_syn F26F24.33, F26F24_33 go_component extracellular region|GO:0005576|11431566|IDA go_function calcium ion binding|GO:0005509||ISS go_function lipase activity|GO:0016298|11431566|ISS product Caleosin-related family protein note Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70670.1); Has 342 Blast hits to 337 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 60; Plants - 279; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G23240.1p transcript_id AT1G23240.1 protein_id AT1G23240.1p transcript_id AT1G23240.1
AT1G23240	chr1:008252894	0.0	C/8252894-8253062,8253198-8253323,8253454-8253548,8253818-8253903,8254051-8254234	AT1G23240.4 AT1G23240.4 CDS Caleosin-related family protein
At1g23240	chr1:008253164	0.0	C/8253164-8253323,8253454-8253548,8253818-8253903,8254051-8254234	AT1G23240.2 CDS Caleosin-related family protein [TAIR10] CDS gene_syn F26F24.33, F26F24_33 go_component extracellular region|GO:0005576|11431566|IDA go_function calcium ion binding|GO:0005509||ISS go_function lipase activity|GO:0016298|11431566|ISS product Caleosin-related family protein note Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23240.2p transcript_id AT1G23240.2 protein_id AT1G23240.2p transcript_id AT1G23240.2
AT1G23250	chr1:008255233	0.0	C/8255233-8255398,8255518-8255643,8255744-8255832,8256014-8256100,8256210-8256269	AT1G23250.2 AT1G23250.2 CDS Caleosin-related family protein
At1g23250	chr1:008255233	0.0	C/8255233-8255398,8255518-8255643,8255744-8255832,8256014-8256100,8256210-8256311,8256524-8256560,8256760-8256770	AT1G23250.1 CDS Caleosin-related family protein [TAIR10] CDS gene_syn F26F24.9, F26F24_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product Caleosin-related family protein note Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G23240.1); Has 299 Blast hits to 298 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 58; Plants - 240; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G23250.1p transcript_id AT1G23250.1 protein_id AT1G23250.1p transcript_id AT1G23250.1
AT1G23260	chr1:008257209	0.0	C/8257209-8257264,8257451-8257577,8257670-8257795,8258185-8258247	AT1G23260.2 AT1G23260.2 CDS MMS ZWEI homologue 1
At1g23260	chr1:008257209	0.0	C/8257209-8257264,8257451-8257577,8257670-8257795,8258185-8258324,8258546-8258573	AT1G23260.1 CDS MMS ZWEI homologue 1 [TAIR10] CDS gene_syn F26F24.10, F26F24_10, MMS ZWEI homologue 1, MMZ1, UBIQUITIN E2 VARIANT 1A, UEV1A gene MMZ1 function MMZ1/UEV1A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ1/UEV1A and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ1/UEV1A transcripts are found at low levels in most plant organs, but cannot be detected in the pollen. Transcript levels do not appear to be stress-inducible. The uev1a-1 mutant shows normal sensitivity to MMS in germination assays suggesting that UEV1A is not required for DNA damage tolerance during this developmental stage. go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI go_process postreplication repair|GO:0006301|18178771|IGI go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA go_function ubiquitin-protein ligase activity|GO:0004842||ISS go_function protein binding|GO:0005515|18178771|IPI product MMS ZWEI homologue 1 note MMS ZWEI homologue 1 (MMZ1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 2 (TAIR:AT1G70660.1); Has 4438 Blast hits to 4438 proteins in 315 species: Archae - 0; Bacteria - 0; Metazoa - 2178; Fungi - 730; Plants - 896; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink). protein_id AT1G23260.1p transcript_id AT1G23260.1 protein_id AT1G23260.1p transcript_id AT1G23260.1
At1g23270	chr1:008259602	0.0	C/8259602-8260144	AT1G23270.1 CDS hypothetical protein [TAIR10] CDS gene_syn F26F24.11, F26F24_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31460.1); Has 901 Blast hits to 142 proteins in 59 species: Archae - 0; Bacteria - 69; Metazoa - 176; Fungi - 29; Plants - 28; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink). protein_id AT1G23270.1p transcript_id AT1G23270.1 protein_id AT1G23270.1p transcript_id AT1G23270.1
At1g23280	chr1:008260865	0.0	C/8260865-8260918,8261014-8261135,8261235-8261352,8261445-8261585,8261675-8261762,8261878-8261975,8262090-8262208,8262386-8262495,8262589-8262650	AT1G23280.1 CDS MAK16 protein-related [TAIR10] CDS gene_syn F26F24.12, F26F24_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product MAK16 protein-related note MAK16 protein-related; CONTAINS InterPro DOMAIN/s: Mak16 protein (InterPro:IPR006958); Has 4868 Blast hits to 3538 proteins in 334 species: Archae - 9; Bacteria - 248; Metazoa - 1831; Fungi - 653; Plants - 272; Viruses - 128; Other Eukaryotes - 1727 (source: NCBI BLink). protein_id AT1G23280.1p transcript_id AT1G23280.1 protein_id AT1G23280.1p transcript_id AT1G23280.1
At1g23290	chr1:008263007	0.0	W/8263007-8263447	AT1G23290.1 CDS Ribosomal protein L18e/L15 superfamily protein [TAIR10] CDS gene_syn 60S RIBOSOMAL PROTEIN L27A, F26F24.13, F26F24_13, RIBOSOMAL PROTEIN L27A, RPL27A, RPL27AB gene RPL27AB function Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex. Regulated by TCP20. go_component nucleolus|GO:0005730|15496452|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_component large ribosomal subunit|GO:0015934||TAS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_process translation|GO:0006412||TAS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L18e/L15 superfamily protein note RPL27AB; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT1G70600.1); Has 1087 Blast hits to 1087 proteins in 423 species: Archae - 174; Bacteria - 23; Metazoa - 355; Fungi - 166; Plants - 138; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink). protein_id AT1G23290.1p transcript_id AT1G23290.1 protein_id AT1G23290.1p transcript_id AT1G23290.1
At1g23300	chr1:008263827	0.0	C/8263827-8263946,8264019-8264105,8264193-8264311,8264412-8264650,8264728-8264784,8264851-8264937,8265027-8265298,8265372-8265641,8265752-8266048	AT1G23300.1 CDS MATE efflux family protein [TAIR10] CDS gene_syn F26F24.14, F26F24_14 go_component membrane|GO:0016020||IEA go_process drug transmembrane transport|GO:0006855||IEA go_process transmembrane transport|GO:0055085||IEA go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020||ISS go_function transporter activity|GO:0005215||ISS go_function antiporter activity|GO:0015297||ISS product MATE efflux family protein note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 9654 Blast hits to 9598 proteins in 1955 species: Archae - 179; Bacteria - 6865; Metazoa - 142; Fungi - 320; Plants - 1342; Viruses - 0; Other Eukaryotes - 806 (source: NCBI BLink). protein_id AT1G23300.1p transcript_id AT1G23300.1 protein_id AT1G23300.1p transcript_id AT1G23300.1
At1g23310	chr1:008268720	0.0	C/8268720-8268849,8268931-8269087,8269186-8269277,8269356-8269420,8269504-8269569,8269649-8269780,8269869-8270042,8270129-8270287,8270371-8270458,8270542-8270623,8270711-8270828,8270912-8270977,8271213-8271329	AT1G23310.1 CDS glutamate:glyoxylate aminotransferase [TAIR10] CDS gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, AOAT1, F26F24.16, F26F24_16, GGAT1, GGT1, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase gene GGT1 function Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway. go_component vacuole|GO:0005773|15539469|IDA go_component peroxisome|GO:0005777|12154131|IDA go_component peroxisome|GO:0005777|17951448|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component apoplast|GO:0048046|18538804|IDA go_component peroxisome|GO:0005777|12529529|IDA go_component peroxisome|GO:0005777|12631323|IDA go_process photorespiration|GO:0009853|12529529|TAS go_process photorespiration|GO:0009853||IMP go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|12529529|IDA go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|17318317|IMP go_function alanine-glyoxylate transaminase activity|GO:0008453|12529529|IDA go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12529529|IDA go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|IMP product glutamate:glyoxylate aminotransferase note glutamate:glyoxylate aminotransferase (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine-2-oxoglutarate aminotransferase 2 (TAIR:AT1G70580.4); Has 27976 Blast hits to 27968 proteins in 2949 species: Archae - 777; Bacteria - 19095; Metazoa - 617; Fungi - 736; Plants - 1276; Viruses - 0; Other Eukaryotes - 5475 (source: NCBI BLink). protein_id AT1G23310.1p transcript_id AT1G23310.1 protein_id AT1G23310.1p transcript_id AT1G23310.1
At1g23310	chr1:008268808	0.0	C/8268808-8268817,8268931-8269087,8269186-8269277,8269356-8269420,8269504-8269569,8269649-8269780,8269869-8270042,8270129-8270287,8270371-8270458,8270542-8270623,8270711-8270828,8270912-8270977,8271213-8271329	AT1G23310.2 CDS glutamate:glyoxylate aminotransferase [TAIR10] CDS gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, AOAT1, F26F24.16, F26F24_16, GGAT1, GGT1, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase gene GGT1 function Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway. go_component vacuole|GO:0005773|15539469|IDA go_component peroxisome|GO:0005777|12154131|IDA go_component peroxisome|GO:0005777|17951448|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_component apoplast|GO:0048046|18538804|IDA go_component peroxisome|GO:0005777|12529529|IDA go_component peroxisome|GO:0005777|12631323|IDA go_process photorespiration|GO:0009853|12529529|TAS go_process photorespiration|GO:0009853||IMP go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|12529529|IDA go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|17318317|IMP go_function alanine-glyoxylate transaminase activity|GO:0008453|12529529|IDA go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12529529|IDA go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|IMP product glutamate:glyoxylate aminotransferase note glutamate:glyoxylate aminotransferase (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine-2-oxoglutarate aminotransferase 2 (TAIR:AT1G70580.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23310.2p transcript_id AT1G23310.2 protein_id AT1G23310.2p transcript_id AT1G23310.2
At1g23320	chr1:008273423	0.0	C/8273423-8273622,8273691-8273980,8274244-8274527,8274795-8275098,8275262-8275350	AT1G23320.1 CDS tryptophan aminotransferase related 1 [TAIR10] CDS gene_syn F26F24.17, F26F24_17, TAR1, tryptophan aminotransferase related 1 gene TAR1 function Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. This gene appears to be expressed at a very low level during seedling development. Triple mutant analyses implicate this gene in embryonic development. go_component cellular_component|GO:0005575||ND go_process embryo development ending in seed dormancy|GO:0009793|18394997|IGI go_process cotyledon vascular tissue pattern formation|GO:0010588|18394997|IGI go_process cotyledon development|GO:0048825|18394997|IGI go_process primary root development|GO:0080022|18394997|IGI go_function carbon-sulfur lyase activity|GO:0016846||ISS go_function L-tryptophan:2-oxoglutarate aminotransferase activity|GO:0050362|18394997|ISS go_function L-tryptophan:pyruvate aminotransferase activity|GO:0080097|18394997|ISS product tryptophan aminotransferase related 1 note tryptophan aminotransferase related 1 (TAR1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase of Arabidopsis 1 (TAIR:AT1G70560.1); Has 469 Blast hits to 469 proteins in 155 species: Archae - 22; Bacteria - 229; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G23320.1p transcript_id AT1G23320.1 protein_id AT1G23320.1p transcript_id AT1G23320.1
At1g23330	chr1:008279874	0.0	C/8279874-8280057,8280164-8280295,8280376-8280819,8280898-8281001,8281098-8281198,8281288-8281391,8281469-8281563,8281640-8281891	AT1G23330.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F26F24.20, F26F24_20 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G10740.4); Has 777 Blast hits to 777 proteins in 229 species: Archae - 0; Bacteria - 631; Metazoa - 3; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). protein_id AT1G23330.1p transcript_id AT1G23330.1 protein_id AT1G23330.1p transcript_id AT1G23330.1
AT1G23330	chr1:008280261	0.0	C/8280261-8280819,8280898-8281001,8281098-8281198,8281288-8281391,8281469-8281563,8281640-8281891	AT1G23330.2 AT1G23330.2 CDS alpha/beta-Hydrolases superfamily protein
At1g23340	chr1:008284158	0.0	C/8284158-8284535,8284977-8285123,8285237-8285290,8285401-8285565,8285853-8286062,8286167-8286253,8286340-8286528	AT1G23340.1 CDS carboxyl-terminal proteinase, putative (DUF239) [TAIR10] CDS gene_syn F26F24.22, F26F24_22 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of Unknown Function (DUF239) note Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G70550.1); Has 778 Blast hits to 728 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 755; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23340.1p transcript_id AT1G23340.1 protein_id AT1G23340.1p transcript_id AT1G23340.1
At1g23340	chr1:008284158	0.0	C/8284158-8284535,8284977-8285123,8285237-8285290,8285401-8285565,8285853-8286062,8286167-8286253,8286340-8286528	AT1G23340.2 CDS carboxyl-terminal proteinase, putative (DUF239) [TAIR10] CDS gene_syn F26F24.22, F26F24_22 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of Unknown Function (DUF239) note Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G70550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23340.2p transcript_id AT1G23340.2 protein_id AT1G23340.2p transcript_id AT1G23340.2
AT1G23340	chr1:008284932	0.0	C/8284932-8285123,8285237-8285290,8285401-8285565,8285853-8286062,8286167-8286253,8286340-8286528	AT1G23340.3 AT1G23340.3 CDS carboxyl-terminal proteinase, putative (DUF239)
At1g23350	chr1:008293696	0.0	C/8293696-8294175	AT1G23350.1 CDS Plant invertase/pectin methylesterase inhibitor superfamily protein [TAIR10] CDS gene_syn F26F24.23, F26F24_23 go_component endomembrane system|GO:0012505||IEA go_function enzyme inhibitor activity|GO:0004857||IEA go_function pectinesterase activity|GO:0030599||IEA go_process biological_process|GO:0008150||ND go_function pectinesterase inhibitor activity|GO:0046910||ISS product Plant invertase/pectin methylesterase inhibitor superfamily protein note Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G70540.1); Has 124 Blast hits to 124 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23350.1p transcript_id AT1G23350.1 protein_id AT1G23350.1p transcript_id AT1G23350.1
At1g23360	chr1:008295421	0.0	C/8295421-8295521,8295677-8295776,8295879-8295940,8296025-8296158,8296254-8296339	AT1G23360.2 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F26F24.24, F26F24_24, MENG gene MENG function Encodes a 2-phytyl-1,4-naphthoquinone methyltransferase that catalyzes the final step in phylloquinone (vitamin K1) biosynthesis. go_component chloroplast|GO:0009507|17082184|IDA go_process phylloquinone biosynthetic process|GO:0042372|17082184|IMP go_function methyltransferase activity|GO:0008168||ISS go_function 2-phytyl-1,4-naphthoquinone methyltransferase activity|GO:0052624|17082184|IMP product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note MENG; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G57300.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23360.2p transcript_id AT1G23360.2 protein_id AT1G23360.2p transcript_id AT1G23360.2
At1g23360	chr1:008295421	0.0	C/8295421-8295521,8295677-8295776,8295879-8295940,8296025-8296158,8296254-8296339	AT1G23360.3 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F26F24.24, F26F24_24, MENG gene MENG function Encodes a 2-phytyl-1,4-naphthoquinone methyltransferase that catalyzes the final step in phylloquinone (vitamin K1) biosynthesis. go_component chloroplast|GO:0009507|17082184|IDA go_process phylloquinone biosynthetic process|GO:0042372|17082184|IMP go_function methyltransferase activity|GO:0008168||ISS go_function 2-phytyl-1,4-naphthoquinone methyltransferase activity|GO:0052624|17082184|IMP product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note MENG; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G57300.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23360.3p transcript_id AT1G23360.3 protein_id AT1G23360.3p transcript_id AT1G23360.3
At1g23360	chr1:008295421	0.0	C/8295421-8295521,8295677-8295776,8295879-8295940,8296025-8296158,8296254-8296342,8296419-8296509,8296594-8296658,8296750-8296893	AT1G23360.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F26F24.24, F26F24_24, MENG gene MENG function Encodes a 2-phytyl-1,4-naphthoquinone methyltransferase that catalyzes the final step in phylloquinone (vitamin K1) biosynthesis. go_component chloroplast|GO:0009507|17082184|IDA go_process phylloquinone biosynthetic process|GO:0042372|17082184|IMP go_function methyltransferase activity|GO:0008168||ISS go_function 2-phytyl-1,4-naphthoquinone methyltransferase activity|GO:0052624|17082184|IMP product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note MENG; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G57300.3); Has 15509 Blast hits to 15504 proteins in 2608 species: Archae - 581; Bacteria - 10386; Metazoa - 311; Fungi - 448; Plants - 417; Viruses - 0; Other Eukaryotes - 3366 (source: NCBI BLink). protein_id AT1G23360.1p transcript_id AT1G23360.1 protein_id AT1G23360.1p transcript_id AT1G23360.1
At1g23380	chr1:008297499	0.0	C/8297499-8297657,8297747-8297988,8301665-8301803,8301905-8302027,8302172-8302492	AT1G23380.1 CDS KNOTTED1-like homeobox gene 6 [TAIR10] CDS gene_syn F26F24.32, F26F24_32, KNAT6, KNAT6L, KNAT6S, KNOTTED1-like homeobox gene 6 gene KNAT6 function homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants. go_component nucleus|GO:0005634||IEA go_process meristem maintenance|GO:0010073|16798887|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|11311158|ISS product KNOTTED1-like homeobox gene 6 note KNOTTED1-like homeobox gene 6 (KNAT6); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: meristem maintenance; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), KNOX1 (InterPro:IPR005540), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana 2 (TAIR:AT1G70510.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23380.1p transcript_id AT1G23380.1 protein_id AT1G23380.1p transcript_id AT1G23380.1
At1g23380	chr1:008297499	0.0	C/8297499-8297657,8297747-8297988,8301665-8301803,8301905-8302033,8302172-8302492	AT1G23380.2 CDS KNOTTED1-like homeobox gene 6 [TAIR10] CDS gene_syn F26F24.32, F26F24_32, KNAT6, KNAT6L, KNAT6S, KNOTTED1-like homeobox gene 6 gene KNAT6 function homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants. go_component nucleus|GO:0005634||IEA go_process meristem maintenance|GO:0010073|16798887|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|11311158|ISS product KNOTTED1-like homeobox gene 6 note KNOTTED1-like homeobox gene 6 (KNAT6); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: meristem maintenance; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana 2 (TAIR:AT1G70510.1); Has 6018 Blast hits to 6018 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 1717; Fungi - 270; Plants - 3877; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink). protein_id AT1G23380.2p transcript_id AT1G23380.2 protein_id AT1G23380.2p transcript_id AT1G23380.2
At1g23390	chr1:008309449	0.0	C/8309449-8310633	AT1G23390.1 CDS Kelch repeat-containing F-box family protein [TAIR10] CDS gene_syn F26F24.26, F26F24_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Kelch repeat-containing F-box family protein note Kelch repeat-containing F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G24760.1); Has 146 Blast hits to 146 proteins in 15 species: Archae - 0; Bacteria - 1; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G23390.1p transcript_id AT1G23390.1 protein_id AT1G23390.1p transcript_id AT1G23390.1
At1g23400	chr1:008312199	0.0	C/8312199-8312593,8312751-8312895,8313170-8313297,8313447-8313672,8313863-8313990,8314068-8314740	AT1G23400.1 CDS RNA-binding CRS1 / YhbY (CRM) domain-containing protein [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, ATCAF2, CAF2, F26F24.27, F26F24_27 gene CAF2 function Promotes the splicing of chloroplast group II introns. go_component chloroplast|GO:0009507||IEA go_function RNA binding|GO:0003723||IEA go_process Group II intron splicing|GO:0000373|17071648|IDA product RNA-binding CRS1 / YhbY (CRM) domain-containing protein note CAF2; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT2G20020.1); Has 265 Blast hits to 223 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 261; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G23400.1p transcript_id AT1G23400.1 protein_id AT1G23400.1p transcript_id AT1G23400.1
At1g23410	chr1:008314940	0.0	W/8314940-8315410	AT1G23410.1 CDS Ribosomal protein S27a / Ubiquitin family protein [TAIR10] CDS gene_syn F26F24.28, F26F24_28 go_component plasma membrane|GO:0005886|17317660|IDA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA go_process protein ubiquitination involved in ubiquitin-dependent protein catabolic process|GO:0042787||ISS product Ribosomal protein S27a / Ubiquitin family protein note Ribosomal protein S27a / Ubiquitin family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12704 Blast hits to 7404 proteins in 782 species: Archae - 114; Bacteria - 22; Metazoa - 5540; Fungi - 1414; Plants - 3101; Viruses - 186; Other Eukaryotes - 2327 (source: NCBI BLink). protein_id AT1G23410.1p transcript_id AT1G23410.1 protein_id AT1G23410.1p transcript_id AT1G23410.1
AT1G23420	chr1:008317330	0.0	W/8317330-8317524,8317622-8317759,8317861-8318011,8318105-8318153,8318273-8318348,8318485-8318583,8319024-8319104	AT1G23420.2 AT1G23420.2 CDS Plant-specific transcription factor YABBY family protein
At1g23420	chr1:008317423	0.0	W/8317423-8317524,8317622-8317759,8317861-8318011,8318105-8318153,8318273-8318348,8318485-8318583,8319024-8319104	AT1G23420.1 CDS Plant-specific transcription factor YABBY family protein [TAIR10] CDS gene_syn F26F24.29, F26F24_29, INNER NO OUTER, INO gene INO function Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule. go_component nucleus|GO:0005634|12183380|IDA go_process polarity specification of adaxial/abaxial axis|GO:0009944|12183380|IDA go_process ovule development|GO:0048481|12183380|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|10601041|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function protein binding|GO:0005515|15299139|IPI product Plant-specific transcription factor YABBY family protein note INNER NO OUTER (INO); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: plant-specific transcription factor YABBY family protein (TAIR:AT2G26580.2); Has 465 Blast hits to 458 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). protein_id AT1G23420.1p transcript_id AT1G23420.1 protein_id AT1G23420.1p transcript_id AT1G23420.1
AT1G23425	chr1:008319687	0.0	C/8319687-8319773,8319839-8319920,8320360-8320478	AT1G23425.1 AT1G23425.1 CDS transmembrane protein, putative
At1g23440	chr1:008321940	0.0	W/8321940-8322200,8323451-8323555,8323659-8323706,8323780-8324019	AT1G23440.1 CDS Peptidase C15, pyroglutamyl peptidase I-like [TAIR10] CDS gene_syn F28C11.26, F28C11_26 go_process proteolysis|GO:0006508||IEA go_component cellular_component|GO:0005575||ND go_process proteolysis|GO:0006508||ISS go_function peptidase activity|GO:0008233||ISS product Peptidase C15, pyroglutamyl peptidase I-like note Peptidase C15, pyroglutamyl peptidase I-like; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I (InterPro:IPR000816), Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: Peptidase C15, pyroglutamyl peptidase I-like (TAIR:AT1G56700.2); Has 1716 Blast hits to 1713 proteins in 745 species: Archae - 108; Bacteria - 1355; Metazoa - 46; Fungi - 19; Plants - 100; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). protein_id AT1G23440.1p transcript_id AT1G23440.1 protein_id AT1G23440.1p transcript_id AT1G23440.1
AT1G23440	chr1:008321940	0.0	W/8321940-8322200,8323451-8323555,8323659-8323706,8323780-8324019	AT1G23440.3 AT1G23440.3 CDS Peptidase C15, pyroglutamyl peptidase I-like
At1g23440	chr1:008321940	0.0	W/8321940-8322224	AT1G23440.2 CDS Peptidase C15, pyroglutamyl peptidase I-like [TAIR10] CDS gene_syn F28C11.26, F28C11_26 go_component cellular_component|GO:0005575||ND go_process proteolysis|GO:0006508||ISS go_function peptidase activity|GO:0008233||ISS product Peptidase C15, pyroglutamyl peptidase I-like note Peptidase C15, pyroglutamyl peptidase I-like; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: Peptidase C15, pyroglutamyl peptidase I-like (TAIR:AT1G56700.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23440.2p transcript_id AT1G23440.2 protein_id AT1G23440.2p transcript_id AT1G23440.2
At1g23450	chr1:008324698	0.0	W/8324698-8325837	AT1G23450.1 CDS PPR superfamily protein [TAIR10] CDS gene_syn F28C11.30, F28C11_30 function pentatricopeptide (PPR) repeat-containing protein go_component mitochondrion|GO:0005739||IEA product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74600.1); Has 39682 Blast hits to 12642 proteins in 175 species: Archae - 0; Bacteria - 2; Metazoa - 59; Fungi - 8; Plants - 39279; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink). protein_id AT1G23450.1p transcript_id AT1G23450.1 protein_id AT1G23450.1p transcript_id AT1G23450.1
At1g23460	chr1:008327382	0.0	W/8327382-8327633,8327844-8327972,8328066-8328236,8328337-8328357,8328457-8328664,8328756-8328837,8328906-8329014,8329108-8329224,8329329-8329622	AT1G23460.1 CDS Pectin lyase-like superfamily protein [TAIR10] CDS gene_syn F28C11.9 go_component endomembrane system|GO:0012505||IEA go_process carbohydrate metabolic process|GO:0005975||IEA go_function polygalacturonase activity|GO:0004650||IEA go_process carbohydrate metabolic process|GO:0005975||ISS go_function polygalacturonase activity|GO:0004650||ISS product Pectin lyase-like superfamily protein note Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 4300 Blast hits to 4283 proteins in 531 species: Archae - 4; Bacteria - 1235; Metazoa - 14; Fungi - 1418; Plants - 1493; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). protein_id AT1G23460.1p transcript_id AT1G23460.1 protein_id AT1G23460.1p transcript_id AT1G23460.1
AT1G23460	chr1:008327454	0.0	W/8327454-8327633,8327844-8327972,8328066-8328236,8328337-8328357,8328457-8328664,8328756-8328837,8328906-8329014,8329108-8329224,8329329-8329622	AT1G23460.2 AT1G23460.2 CDS Pectin lyase-like superfamily protein
At1g23465	chr1:008330055	0.0	W/8330055-8330180,8330256-8330480,8330822-8330932,8331057-8331104	AT1G23465.1 CDS Peptidase S24/S26A/S26B/S26C family protein [TAIR10] CDS go_component membrane|GO:0016020||IEA go_process proteolysis|GO:0006508||IEA go_function serine-type peptidase activity|GO:0008236||IEA product Peptidase S24/S26A/S26B/S26C family protein note Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G29960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23465.1p transcript_id AT1G23465.1 protein_id AT1G23465.1p transcript_id AT1G23465.1
AT1G23465	chr1:008330055	0.0	W/8330055-8330180,8330256-8330480,8330822-8330932,8331057-8331104	AT1G23465.2 AT1G23465.2 CDS Peptidase S24/S26A/S26B/S26C family protein
AT1G23465	chr1:008330055	0.0	W/8330055-8330180,8330256-8330480,8330822-8330932,8331057-8331104	AT1G23465.3 AT1G23465.3 CDS Peptidase S24/S26A/S26B/S26C family protein
AT1G23465	chr1:008330055	0.0	W/8330055-8330180,8330256-8330480,8330822-8330932,8331057-8331104	AT1G23465.4 AT1G23465.4 CDS Peptidase S24/S26A/S26B/S26C family protein
AT1G23465	chr1:008330055	0.0	W/8330055-8330180,8330256-8330480,8330822-8330932,8331057-8331104	AT1G23465.5 AT1G23465.5 CDS Peptidase S24/S26A/S26B/S26C family protein
At1g23470	chr1:008331297	0.0	W/8331297-8332136	AT1G23470.1 [TAIR10] pseudogene
At1g23480	chr1:008333917	0.0	W/8333917-8333982,8334082-8334414,8334511-8334609,8334720-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.1 CDS cellulose synthase-like A3 [TAIR10] CDS gene_syn ATCSLA03, ATCSLA3, CELLULOSE SYNTHASE-LIKE A3, CSLA03, CSLA3, F28C11.11, cellulose synthase-like A3 gene CSLA03 function encodes a gene similar to cellulose synthase go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function cellulose synthase activity|GO:0016759||ISS product cellulose synthase-like A3 note cellulose synthase-like A3 (CSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G13410.1); Has 4758 Blast hits to 4752 proteins in 1373 species: Archae - 199; Bacteria - 3673; Metazoa - 9; Fungi - 91; Plants - 500; Viruses - 11; Other Eukaryotes - 275 (source: NCBI BLink). protein_id AT1G23480.1p transcript_id AT1G23480.1 protein_id AT1G23480.1p transcript_id AT1G23480.1
At1g23480	chr1:008333917	0.0	W/8333917-8333982,8334082-8334414,8334511-8334609,8334720-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.2 CDS cellulose synthase-like A3 [TAIR10] CDS gene_syn ATCSLA03, ATCSLA3, CELLULOSE SYNTHASE-LIKE A3, CSLA03, CSLA3, F28C11.11, cellulose synthase-like A3 gene CSLA03 function encodes a gene similar to cellulose synthase go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function cellulose synthase activity|GO:0016759||ISS product cellulose synthase-like A3 note cellulose synthase-like A3 (CSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G13410.1); Has 4744 Blast hits to 4738 proteins in 1369 species: Archae - 198; Bacteria - 3660; Metazoa - 9; Fungi - 91; Plants - 500; Viruses - 11; Other Eukaryotes - 275 (source: NCBI BLink). protein_id AT1G23480.2p transcript_id AT1G23480.2 protein_id AT1G23480.2p transcript_id AT1G23480.2
At1g23480	chr1:008334232	0.0	W/8334232-8334414,8334511-8334609,8334720-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.3 CDS cellulose synthase-like A3 [TAIR10] CDS gene_syn ATCSLA03, ATCSLA3, CELLULOSE SYNTHASE-LIKE A3, CSLA03, CSLA3, F28C11.11, cellulose synthase-like A3 gene CSLA03 function encodes a gene similar to cellulose synthase go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function cellulose synthase activity|GO:0016759||ISS product cellulose synthase-like A3 note cellulose synthase-like A3 (CSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G13410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23480.3p transcript_id AT1G23480.3 protein_id AT1G23480.3p transcript_id AT1G23480.3
AT1G23480	chr1:008334657	0.0	W/8334657-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.4 AT1G23480.4 CDS cellulose synthase-like A3
At1g23490	chr1:008337232	0.0	W/8337232-8337379,8337509-8337579,8337733-8337852,8337940-8338058,8338192-8338273,8338368-8338373	AT1G23490.1 CDS ADP-ribosylation factor 1 [TAIR10] CDS gene_syn ADP-RIBOSYLATION FACTOR, ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1, ARF1, ATARF, ATARF1, ATARFA1A, F28C11.12 gene ARF1 function Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. go_component intracellular|GO:0005622||IEA go_process response to cadmium ion|GO:0046686|16502469|IEP go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA go_function protein binding|GO:0005515|17307898|IPI go_function GTP binding|GO:0005525|15723828|ISS go_function GTP binding|GO:0005525|15723828|TAS go_function phospholipase activator activity|GO:0016004|15723828|TAS product ADP-ribosylation factor 1 note ADP-ribosylation factor 1 (ARF1); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: response to cadmium ion, N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT1G70490.2); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink). protein_id AT1G23490.1p transcript_id AT1G23490.1 protein_id AT1G23490.1p transcript_id AT1G23490.1
At1g23500	chr1:008339668	0.0	W/8339668-8339926,8340038-8340168,8340253-8340480,8340571-8340826,8340909-8341072	AT1G23500.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F28C11.13 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function lipase activity|GO:0016298||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS go_function lipase activity|GO:0016298||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G73610.1); Has 3401 Blast hits to 3359 proteins in 201 species: Archae - 0; Bacteria - 305; Metazoa - 0; Fungi - 23; Plants - 3055; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). protein_id AT1G23500.1p transcript_id AT1G23500.1 protein_id AT1G23500.1p transcript_id AT1G23500.1
At1g23510	chr1:008341682	0.0	C/8341682-8341753,8341840-8341986,8342077-8342223,8342348-8342422	AT1G23510.2 CDS OBP32pep protein, putative [TAIR10] CDS gene_syn F28C11.14, F28C11_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G23520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23510.2p transcript_id AT1G23510.2 protein_id AT1G23510.2p transcript_id AT1G23510.2
AT1G23510	chr1:008341682	0.0	C/8341682-8341753,8341840-8341986,8342077-8342223,8342348-8342422	AT1G23510.3 AT1G23510.3 CDS OBP32pep protein, putative
At1g23510	chr1:008341682	0.0	C/8341682-8341753,8341840-8341986,8342077-8342223,8342348-8342497,8342584-8342646	AT1G23510.1 CDS OBP32pep protein, putative [TAIR10] CDS gene_syn F28C11.14, F28C11_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G23520.1); Has 133 Blast hits to 120 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23510.1p transcript_id AT1G23510.1 protein_id AT1G23510.1p transcript_id AT1G23510.1
AT1G23520	chr1:008343571	0.0	C/8343571-8343875,8343989-8344118,8344218-8344496,8344616-8344675	AT1G23520.4 AT1G23520.4 CDS hypothetical protein (DUF220)
At1g23520	chr1:008343571	0.0	C/8343571-8343879,8343975-8344118,8344218-8344496,8344616-8344675	AT1G23520.1 CDS hypothetical protein (DUF220) [TAIR10] CDS gene_syn F28C11.15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF220) note Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 145 Blast hits to 132 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23520.1p transcript_id AT1G23520.1 protein_id AT1G23520.1p transcript_id AT1G23520.1
At1g23520	chr1:008343836	0.0	C/8343836-8343879,8343989-8344118,8344218-8344496,8344616-8344675	AT1G23520.2 CDS hypothetical protein (DUF220) [TAIR10] CDS gene_syn F28C11.15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF220) note Domain of unknown function (DUF220); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23510.1). protein_id AT1G23520.2p transcript_id AT1G23520.2 protein_id AT1G23520.2p transcript_id AT1G23520.2
AT1G23520	chr1:008344155	0.0	C/8344155-8344496,8344616-8344675	AT1G23520.3 AT1G23520.3 CDS hypothetical protein (DUF220)
At1g23530	chr1:008345861	0.0	W/8345861-8346430	AT1G23530.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F28C11.16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70470.1); Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G23530.1p transcript_id AT1G23530.1 protein_id AT1G23530.1p transcript_id AT1G23530.1
At1g23540	chr1:008346942	0.0	C/8346942-8347187,8347278-8347439,8347525-8347672,8347827-8347903,8347993-8348063,8348162-8348248,8348331-8348822,8348907-8349786	AT1G23540.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn AtPERK12, F28C11.17, IGI1, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase gene IGI1 function Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes. go_component chloroplast|GO:0009507||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_process developmental process|GO:0032502|20473553|IMP go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note INFLORESCENCE GROWTH INHIBITOR 1 (IGI1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: developmental process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, anther, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: root hair specific 10 (TAIR:AT1G70460.1); Has 385447 Blast hits to 227080 proteins in 6289 species: Archae - 678; Bacteria - 66210; Metazoa - 145576; Fungi - 56663; Plants - 56890; Viruses - 7200; Other Eukaryotes - 52230 (source: NCBI BLink). protein_id AT1G23540.1p transcript_id AT1G23540.1 protein_id AT1G23540.1p transcript_id AT1G23540.1
AT1G23540	chr1:008347823	0.0	C/8347823-8347903,8347993-8348063,8348162-8348248,8348331-8348822,8348907-8349786	AT1G23540.2 AT1G23540.2 CDS Protein kinase superfamily protein
At1g23550	chr1:008350912	0.0	W/8350912-8351399,8351579-8351817,8351901-8352031,8352119-8352232	AT1G23550.1 CDS similar to RCD one 2 [TAIR10] CDS gene_syn F28C11.18, SRO2, similar to RCD one 2 gene SRO2 function Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA go_process biological_process|GO:0008150||ND product similar to RCD one 2 note similar to RCD one 2 (SRO2); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 3 (TAIR:AT1G70440.1); Has 178 Blast hits to 169 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G23550.1p transcript_id AT1G23550.1 protein_id AT1G23550.1p transcript_id AT1G23550.1
AT1G23550	chr1:008350912	0.0	W/8350912-8351399,8351579-8351817,8351901-8352031,8352119-8352232	AT1G23550.2 AT1G23550.2 CDS similar to RCD one 2
At1g23560	chr1:008352802	0.0	C/8352802-8353242,8353325-8353468,8353552-8353674,8353763-8353924,8354017-8354145	AT1G23560.1 CDS OBP32pep, putative (DUF220) [TAIR10] CDS gene_syn F28C11.32 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF220) note Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G70480.2); Has 154 Blast hits to 140 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23560.1p transcript_id AT1G23560.1 protein_id AT1G23560.1p transcript_id AT1G23560.1
AT1G23560	chr1:008352802	0.0	C/8352802-8353242,8353325-8353468,8353552-8353674,8353763-8353924,8354017-8354145	AT1G23560.2 AT1G23560.2 CDS OBP32pep, putative (DUF220)
At1g23570	chr1:008355081	0.0	C/8355081-8355491,8355589-8355732,8356053-8356232,8356308-8356364	AT1G23570.2 CDS hypothetical protein (DUF220) [TAIR10] CDS gene_syn F28C11.33 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Domain of unknown function (DUF220) note Domain of unknown function (DUF220); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23580.1); Has 171 Blast hits to 155 proteins in 28 species: Archae - 0; Bacteria - 29; Metazoa - 2; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23570.2p transcript_id AT1G23570.2 protein_id AT1G23570.2p transcript_id AT1G23570.2
At1g23570	chr1:008355081	0.0	C/8355081-8355491,8355589-8355732,8356059-8356232,8356308-8356364	AT1G23570.1 CDS hypothetical protein (DUF220) [TAIR10] CDS gene_syn F28C11.33 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Domain of unknown function (DUF220) note Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23570.1p transcript_id AT1G23570.1 protein_id AT1G23570.1p transcript_id AT1G23570.1
At1g23570	chr1:008355081	0.0	C/8355081-8355491,8355589-8355738	AT1G23570.3 CDS hypothetical protein (DUF220) [TAIR10] CDS gene_syn F28C11.33 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Domain of unknown function (DUF220) note Domain of unknown function (DUF220); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23570.3p transcript_id AT1G23570.3 protein_id AT1G23570.3p transcript_id AT1G23570.3
At1g23580	chr1:008357491	0.0	C/8357491-8357853,8357949-8358236	AT1G23580.1 CDS transmembrane protein, putative (Domain of unknown function DUF220) [TAIR10] CDS gene_syn F28C11.28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function DUF220 note Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 137 Blast hits to 122 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23580.1p transcript_id AT1G23580.1 protein_id AT1G23580.1p transcript_id AT1G23580.1
At1g23590	chr1:008359440	0.0	C/8359440-8359646,8359740-8359883,8359984-8360118,8360221-8360322	AT1G23590.2 CDS OBP32pep protein, putative (Domain of unknown function DUF220) [TAIR10] CDS gene_syn F28C11.29 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function DUF220 note Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 137 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23590.2p transcript_id AT1G23590.2 protein_id AT1G23590.2p transcript_id AT1G23590.2
At1g23590	chr1:008359440	0.0	C/8359440-8359646,8359740-8359883,8359984-8360118,8360221-8360370,8360504-8360521	AT1G23590.1 CDS OBP32pep protein, putative (Domain of unknown function DUF220) [TAIR10] CDS gene_syn F28C11.29 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function DUF220 note Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 137 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23590.1p transcript_id AT1G23590.1 protein_id AT1G23590.1p transcript_id AT1G23590.1
At1g23600	chr1:008361198	0.0	C/8361198-8361515,8361608-8361751,8361832-8361969,8362072-8362224,8362299-8362358	AT1G23600.1 CDS OBP32pep protein, putative (Domain of unknown function DUF220) [TAIR10] CDS gene_syn F28C11.31 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function DUF220 note Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23690.1); Has 147 Blast hits to 132 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23600.1p transcript_id AT1G23600.1 protein_id AT1G23600.1p transcript_id AT1G23600.1
At1g23600	chr1:008361198	0.0	C/8361198-8361515,8361608-8361751,8362072-8362224,8362299-8362358	AT1G23600.2 CDS OBP32pep protein, putative (Domain of unknown function DUF220) [TAIR10] CDS gene_syn F28C11.31 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function DUF220 note Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G23570.2); Has 139 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23600.2p transcript_id AT1G23600.2 protein_id AT1G23600.2p transcript_id AT1G23600.2
At1g23610	chr1:008363192	0.0	C/8363192-8363278,8363361-8363450,8363514-8363573	AT1G23610.1 CDS hypothetical protein [TAIR10] CDS gene_syn F28C11.24 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23610.1p transcript_id AT1G23610.1 protein_id AT1G23610.1p transcript_id AT1G23610.1
At1g23620	chr1:008364662	0.0	C/8364662-8366449	AT1G23620.1 [TAIR10] pseudogene
At1g23640	chr1:008367170	0.0	C/8367170-8367478,8367578-8367721,8367804-8367941,8368063-8368206,8368279-8368321,8368480-8368523,8369342-8369422,8369547-8369690,8369981-8370148,8370221-8370280	AT1G23640.1 CDS hypothetical protein [TAIR10] CDS gene_syn F28C11.27 go_component chloroplast|GO:0009507||IEA product unknown protein note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23640.1p transcript_id AT1G23640.1 protein_id AT1G23640.1p transcript_id AT1G23640.1
At1g23650	chr1:008371020	0.0	C/8371020-8371106	AT1G23650.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5O8.41, F5O8_41 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23650.1p transcript_id AT1G23650.1 protein_id AT1G23650.1p transcript_id AT1G23650.1
At1g23660	chr1:008371609	0.0	C/8371609-8371917,8372008-8372151,8372244-8372381,8372497-8372640,8372713-8372772	AT1G23660.1 CDS hypothetical protein (Domain of unknown function DUF220) [TAIR10] CDS gene_syn F28C11.23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function DUF220 note Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23640.1); Has 149 Blast hits to 134 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23660.1p transcript_id AT1G23660.1 protein_id AT1G23660.1p transcript_id AT1G23660.1
At1g23670	chr1:008373407	0.0	C/8373407-8373721,8373834-8373980,8374068-8374202,8375530-8375676,8375757-8375807	AT1G23670.2 CDS OBP32pep protein, putative (DUF220) [TAIR10] CDS gene_syn F28C11.25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF220) note Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G23520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23670.2p transcript_id AT1G23670.2 protein_id AT1G23670.2p transcript_id AT1G23670.2
At1g23670	chr1:008373407	0.0	C/8373407-8373721,8373834-8373980,8375530-8375676,8375757-8375807	AT1G23670.1 CDS OBP32pep protein, putative (DUF220) [TAIR10] CDS gene_syn F28C11.25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF220) note Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.2); Has 138 Blast hits to 122 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23670.1p transcript_id AT1G23670.1 protein_id AT1G23670.1p transcript_id AT1G23670.1
At1g23680	chr1:008376687	0.0	C/8376687-8376928,8376959-8377094,8377136-8377156	AT1G23680.1 CDS hypothetical protein (DUF220) [TAIR10] CDS gene_syn F5O8.23, F5O8_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function (DUF220) note Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.2); Has 82 Blast hits to 71 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23680.1p transcript_id AT1G23680.1 protein_id AT1G23680.1p transcript_id AT1G23680.1
AT1G23690	chr1:008377433	0.0	C/8377433-8377741,8377836-8377979,8378066-8378179	AT1G23690.4 AT1G23690.4 CDS hypothetical protein (Domain of unknown function DUF220)
At1g23690	chr1:008377433	0.0	C/8377433-8377741,8377836-8377979,8378066-8378191,8378301-8378465,8378572-8378634	AT1G23690.2 CDS hypothetical protein (Domain of unknown function DUF220) [TAIR10] CDS gene_syn F5O8.24, F5O8_24 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function DUF220 note Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 139 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23690.2p transcript_id AT1G23690.2 protein_id AT1G23690.2p transcript_id AT1G23690.2
At1g23690	chr1:008377433	0.0	C/8377433-8377741,8377836-8377979,8378066-8378206,8378301-8378465,8378572-8378634	AT1G23690.1 CDS hypothetical protein (Domain of unknown function DUF220) [TAIR10] CDS gene_syn F5O8.24, F5O8_24 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function DUF220 note Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 139 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23690.1p transcript_id AT1G23690.1 protein_id AT1G23690.1p transcript_id AT1G23690.1
At1g23690	chr1:008377433	0.0	C/8377433-8377741,8378066-8378206,8378301-8378465,8378572-8378634	AT1G23690.3 CDS hypothetical protein (Domain of unknown function DUF220) [TAIR10] CDS gene_syn F5O8.24, F5O8_24 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Domain of unknown function DUF220 note Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1). protein_id AT1G23690.3p transcript_id AT1G23690.3 protein_id AT1G23690.3p transcript_id AT1G23690.3
AT1G23700	chr1:008379248	0.0	C/8379248-8379251,8379340-8379391,8379480-8379532,8379617-8379777,8379871-8379987,8380110-8380226,8380411-8380467,8380548-8380718,8380801-8380866,8380967-8381030,8381120-8381167,8381252-8381382,8381464-8381718,8381810-8381965	AT1G23700.3 AT1G23700.3 CDS Protein kinase superfamily protein
At1g23700	chr1:008379454	0.0	C/8379454-8379532,8379617-8379777,8379871-8379987,8380110-8380226,8380411-8380467,8380548-8380718,8380801-8380866,8380967-8381030,8381120-8381167,8381252-8381382,8381464-8381718,8381810-8381965	AT1G23700.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F5O8.25, F5O8_25 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G70430.1); Has 103117 Blast hits to 102139 proteins in 2791 species: Archae - 74; Bacteria - 10936; Metazoa - 39156; Fungi - 10487; Plants - 25171; Viruses - 401; Other Eukaryotes - 16892 (source: NCBI BLink). protein_id AT1G23700.1p transcript_id AT1G23700.1 protein_id AT1G23700.1p transcript_id AT1G23700.1
AT1G23700	chr1:008379575	0.0	C/8379575-8379654,8379735-8379777,8379871-8379987,8380411-8380467,8380548-8380718,8380801-8380866,8380967-8381030,8381120-8381167,8381252-8381382,8381464-8381718,8381810-8381965	AT1G23700.2 AT1G23700.2 CDS Protein kinase superfamily protein
At1g23710	chr1:008385363	0.0	W/8385363-8386250	AT1G23710.1 CDS hypothetical protein (DUF1645) [TAIR10] CDS gene_syn F5O8.26, F5O8_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1645) note Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G70420.1); Has 288 Blast hits to 282 proteins in 52 species: Archae - 0; Bacteria - 6; Metazoa - 16; Fungi - 11; Plants - 191; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). protein_id AT1G23710.1p transcript_id AT1G23710.1 protein_id AT1G23710.1p transcript_id AT1G23710.1
AT1G23720	chr1:008388583	0.0	W/8388583-8390468,8390544-8391342	AT1G23720.3 AT1G23720.3 CDS Proline-rich extensin-like family protein
AT1G23720	chr1:008388583	0.0	W/8388583-8391342	AT1G23720.2 AT1G23720.2 CDS Proline-rich extensin-like family protein
AT1G23720	chr1:008388655	0.0	W/8388655-8389712,8389788-8391342	AT1G23720.4 AT1G23720.4 CDS Proline-rich extensin-like family protein
At1g23720	chr1:008388655	0.0	W/8388655-8391342	AT1G23720.1 CDS Proline-rich extensin-like family protein [TAIR10] CDS gene_syn F5O8.27, F5O8_27 go_process plant-type cell wall organization|GO:0009664||IEA go_function structural constituent of cell wall|GO:0005199||IEA product Proline-rich extensin-like family protein note Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: hypocotyl, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G13390.1); Has 541802 Blast hits to 61860 proteins in 2130 species: Archae - 1218; Bacteria - 96253; Metazoa - 194950; Fungi - 87318; Plants - 78001; Viruses - 13090; Other Eukaryotes - 70972 (source: NCBI BLink). protein_id AT1G23720.1p transcript_id AT1G23720.1 protein_id AT1G23720.1p transcript_id AT1G23720.1
At1g23724	chr1:008393187	0.0	W/8393187-8393330	AT1G23724.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23724.1p transcript_id AT1G23724.1 protein_id AT1G23724.1p transcript_id AT1G23724.1
At1g23730	chr1:008395965	0.0	W/8395965-8396017,8396266-8396406,8396679-8396727,8396965-8397081,8397197-8397250,8397466-8397554,8397642-8397747,8397847-8398014	AT1G23730.1 CDS beta carbonic anhydrase 3 [TAIR10] CDS gene_syn ATBCA3, BCA3, BETA CARBONIC ANHYDRASE 3, F5O8.28, F5O8_28, beta carbonic anhydrase 3 gene BCA3 go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_process carbon utilization|GO:0015976||IEA go_function carbonate dehydratase activity|GO:0004089||IEA go_function zinc ion binding|GO:0008270||IEA go_component cytosol|GO:0005829|17407539|IDA go_process carbon utilization|GO:0015976||ISS go_function carbonate dehydratase activity|GO:0004089||ISS go_function zinc ion binding|GO:0008270||ISS product beta carbonic anhydrase 3 note beta carbonic anhydrase 3 (BCA3); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 4 (TAIR:AT1G70410.1); Has 5075 Blast hits to 5060 proteins in 1504 species: Archae - 26; Bacteria - 3914; Metazoa - 59; Fungi - 205; Plants - 361; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink). protein_id AT1G23730.1p transcript_id AT1G23730.1 protein_id AT1G23730.1p transcript_id AT1G23730.1
AT1G23730	chr1:008395965	0.0	W/8395965-8396017,8396266-8396406,8396679-8396727,8396965-8397081,8397197-8397250,8397466-8397554,8397642-8397747,8397847-8398014	AT1G23730.2 AT1G23730.2 CDS beta carbonic anhydrase 3
At1g23740	chr1:008398245	0.0	C/8398245-8398510,8398600-8398759,8398839-8399162,8399246-8399656	AT1G23740.1 CDS Oxidoreductase, zinc-binding dehydrogenase family protein [TAIR10] CDS gene_syn F5O8.29, F5O8_29 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component thylakoid|GO:0009579|16648217|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component apoplast|GO:0048046|18538804|IDA go_function zinc ion binding|GO:0008270||IEA go_function oxidoreductase activity|GO:0016491||IEA go_component stromule|GO:0010319|16923014|IDA go_process response to cold|GO:0009409|16923014|IEP go_function zinc ion binding|GO:0008270||ISS product Oxidoreductase, zinc-binding dehydrogenase family protein note Oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G13010.1); Has 40144 Blast hits to 39997 proteins in 2741 species: Archae - 622; Bacteria - 25898; Metazoa - 1494; Fungi - 3833; Plants - 1284; Viruses - 3; Other Eukaryotes - 7010 (source: NCBI BLink). protein_id AT1G23740.1p transcript_id AT1G23740.1 protein_id AT1G23740.1p transcript_id AT1G23740.1
At1g23750	chr1:008400638	0.0	W/8400638-8400863,8400984-8401171	AT1G23750.1 CDS Nucleic acid-binding, OB-fold-like protein [TAIR10] CDS gene_syn F5O8.30, F5O8_30 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Nucleic acid-binding, OB-fold-like protein note Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G10590.2); Has 249 Blast hits to 249 proteins in 61 species: Archae - 55; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G23750.1p transcript_id AT1G23750.1 protein_id AT1G23750.1p transcript_id AT1G23750.1
AT1G23750	chr1:008400749	0.0	W/8400749-8400863,8400984-8401171	AT1G23750.2 AT1G23750.2 CDS Nucleic acid-binding, OB-fold-like protein
At1g23760	chr1:008402142	0.0	W/8402142-8402192,8402330-8404147	AT1G23760.1 CDS BURP domain-containing protein [TAIR10] CDS gene_syn F5O8.31, F5O8_31, JP630, PG3, POLYGALACTURONASE 3 gene JP630 function Encodes aromatic rich glycoprotein JP630. go_process biological_process|GO:0008150||ND go_function polygalacturonase activity|GO:0004650||ISS product BURP domain-containing protein note JP630; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 1783 Blast hits to 1423 proteins in 248 species: Archae - 0; Bacteria - 362; Metazoa - 287; Fungi - 197; Plants - 556; Viruses - 4; Other Eukaryotes - 377 (source: NCBI BLink). protein_id AT1G23760.1p transcript_id AT1G23760.1 protein_id AT1G23760.1p transcript_id AT1G23760.1
At1g23770	chr1:008405214	0.0	C/8405214-8406266	AT1G23770.1 CDS F-box family protein [TAIR10] CDS gene_syn F5O8.32, F5O8_32 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23780.1); Has 268 Blast hits to 268 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G23770.1p transcript_id AT1G23770.1 protein_id AT1G23770.1p transcript_id AT1G23770.1
At1g23780	chr1:008407053	0.0	C/8407053-8408480	AT1G23780.1 CDS F-box family protein [TAIR10] CDS gene_syn F5O8.33, F5O8_33 product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23770.1); Has 310 Blast hits to 310 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G23780.1p transcript_id AT1G23780.1 protein_id AT1G23780.1p transcript_id AT1G23780.1
At1g23790	chr1:008410099	0.0	W/8410099-8410830,8410906-8411073,8411165-8411256,8411353-8411917	AT1G23790.1 CDS dicer-like protein (DUF936) [TAIR10] CDS gene_syn F5O8.34, F5O8_34 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF936) note Plant protein of unknown function (DUF936); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF936) (TAIR:AT1G70340.1); Has 265 Blast hits to 216 proteins in 30 species: Archae - 0; Bacteria - 7; Metazoa - 9; Fungi - 7; Plants - 237; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G23790.1p transcript_id AT1G23790.1 protein_id AT1G23790.1p transcript_id AT1G23790.1
At1g23800	chr1:008412238	0.0	C/8412238-8412511,8412598-8412659,8412734-8412871,8412964-8413101,8413175-8413348,8413440-8413529,8413608-8413837,8413933-8414086,8414171-8414313,8414387-8414512,8414729-8414804	AT1G23800.1 CDS aldehyde dehydrogenase 2B7 [TAIR10] CDS gene_syn ALDH2B, ALDH2B7, F5O8.35, F5O8_35, aldehyde dehydrogenase 2B, aldehyde dehydrogenase 2B7 gene ALDH2B7 function Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product. go_component mitochondrion|GO:0005739||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11999848|ISS product aldehyde dehydrogenase 2B7 note aldehyde dehydrogenase 2B7 (ALDH2B7); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 60835 Blast hits to 60447 proteins in 2994 species: Archae - 474; Bacteria - 34339; Metazoa - 2649; Fungi - 2135; Plants - 1675; Viruses - 0; Other Eukaryotes - 19563 (source: NCBI BLink). protein_id AT1G23800.1p transcript_id AT1G23800.1 protein_id AT1G23800.1p transcript_id AT1G23800.1
AT1G23800	chr1:008412868	0.0	C/8412868-8413101,8413175-8413348,8413440-8413529,8413608-8413837,8413933-8414086,8414171-8414313,8414387-8414512,8414729-8414804	AT1G23800.2 AT1G23800.2 CDS aldehyde dehydrogenase 2B7
At1g23810	chr1:008417495	0.0	W/8417495-8417637,8417720-8418001,8418103-8418220,8418301-8418402,8418486-8418566	AT1G23810.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F5O8.36, F5O8_36 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G24250.1); Has 824 Blast hits to 569 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 147; Plants - 338; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). protein_id AT1G23810.1p transcript_id AT1G23810.1 protein_id AT1G23810.1p transcript_id AT1G23810.1
At1g23820	chr1:008420278	0.0	W/8420278-8420578,8420672-8420748,8420840-8420962,8421618-8421722,8421819-8421891,8421991-8422062,8422168-8422367,8422448-8422480	AT1G23820.2 CDS spermidine synthase [TAIR10] CDS gene_syn F5O8.38, F5O8_38, SPDS1, spermidine synthase 1 gene SPDS1 function Spermidine synthase. go_component cellular_component|GO:0005575||ND go_process spermidine biosynthetic process|GO:0008295|12220656|IDA go_function spermidine synthase activity|GO:0004766|12220656|IDA product spermidine synthase 1 note spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 2 (TAIR:AT1G70310.1); Has 5225 Blast hits to 5225 proteins in 1497 species: Archae - 169; Bacteria - 2879; Metazoa - 350; Fungi - 195; Plants - 413; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink). protein_id AT1G23820.2p transcript_id AT1G23820.2 protein_id AT1G23820.2p transcript_id AT1G23820.2
At1g23820	chr1:008420410	0.0	W/8420410-8420578,8420672-8420748,8420840-8420962,8421618-8421722,8421819-8421891,8421991-8422062,8422168-8422363,8422448-8422571,8422659-8422721	AT1G23820.1 CDS spermidine synthase [TAIR10] CDS gene_syn F5O8.38, F5O8_38, SPDS1, spermidine synthase 1 gene SPDS1 function Spermidine synthase. go_component cellular_component|GO:0005575||ND go_process spermidine biosynthetic process|GO:0008295|12220656|IDA go_function spermidine synthase activity|GO:0004766|12220656|IDA product spermidine synthase 1 note spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 2 (TAIR:AT1G70310.1); Has 5258 Blast hits to 5255 proteins in 1502 species: Archae - 169; Bacteria - 2896; Metazoa - 353; Fungi - 199; Plants - 416; Viruses - 0; Other Eukaryotes - 1225 (source: NCBI BLink). protein_id AT1G23820.1p transcript_id AT1G23820.1 protein_id AT1G23820.1p transcript_id AT1G23820.1
At1g23830	chr1:008423003	0.0	C/8423003-8424040	AT1G23830.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F5O8.39, F5O8_39 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 57 Blast hits to 52 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23830.1p transcript_id AT1G23830.1 protein_id AT1G23830.1p transcript_id AT1G23830.1
At1g23840	chr1:008424321	0.0	C/8424321-8425337	AT1G23840.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F5O8.40, F5O8_40 go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23850.1); Has 53 Blast hits to 48 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23840.1p transcript_id AT1G23840.1 protein_id AT1G23840.1p transcript_id AT1G23840.1
At1g23850	chr1:008425981	0.0	C/8425981-8427045	AT1G23850.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T23E23.1, T23E23_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 47 Blast hits to 40 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23850.1p transcript_id AT1G23850.1 protein_id AT1G23850.1p transcript_id AT1G23850.1
At1g23860	chr1:008428091	0.0	C/8428091-8428097,8428235-8428330,8428605-8428818,8428915-8429003,8429076-8429164	AT1G23860.3 CDS RS-containing zinc finger protein 21 [TAIR10] CDS gene_syn RS-containing zinc finger protein 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2 gene RSZP21 function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. go_component nucleus|GO:0005634|9761791|IPI go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS go_function protein binding|GO:0005515|9761791|IPI product RS-containing zinc finger protein 21 note SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G23860.3p transcript_id AT1G23860.3 protein_id AT1G23860.3p transcript_id AT1G23860.3
At1g23860	chr1:008428091	0.0	C/8428091-8428097,8428235-8428399,8428605-8428818,8428915-8429003,8429076-8429164	AT1G23860.1 CDS RS-containing zinc finger protein 21 [TAIR10] CDS gene_syn RS-containing zinc finger protein 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2 gene RSZP21 function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. go_component nucleus|GO:0005634|9761791|IPI go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS go_function protein binding|GO:0005515|9761791|IPI product RS-containing zinc finger protein 21 note RS-containing zinc finger protein 21 (RSZP21); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 6291 Blast hits to 5531 proteins in 385 species: Archae - 0; Bacteria - 201; Metazoa - 3437; Fungi - 488; Plants - 1566; Viruses - 48; Other Eukaryotes - 551 (source: NCBI BLink). protein_id AT1G23860.1p transcript_id AT1G23860.1 protein_id AT1G23860.1p transcript_id AT1G23860.1
At1g23860	chr1:008428091	0.0	C/8428091-8428097,8428235-8428399,8428605-8428818,8428915-8429003,8429076-8429164	AT1G23860.2 CDS RS-containing zinc finger protein 21 [TAIR10] CDS gene_syn RS-containing zinc finger protein 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2 gene RSZP21 function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. go_component nucleus|GO:0005634|9761791|IPI go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS go_function protein binding|GO:0005515|9761791|IPI product RS-containing zinc finger protein 21 note SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23860.2p transcript_id AT1G23860.2 protein_id AT1G23860.2p transcript_id AT1G23860.2
At1g23860	chr1:008428091	0.0	C/8428091-8428097,8428235-8428399,8428617-8428818,8428915-8429003,8429076-8429164	AT1G23860.4 CDS RS-containing zinc finger protein 21 [TAIR10] CDS gene_syn RS-containing zinc finger protein 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2 gene RSZP21 function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. go_component nucleus|GO:0005634|9761791|IPI go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS go_function protein binding|GO:0005515|9761791|IPI product RS-containing zinc finger protein 21 note RS-containing zinc finger protein 21 (RSZP21); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2). protein_id AT1G23860.4p transcript_id AT1G23860.4 protein_id AT1G23860.4p transcript_id AT1G23860.4
At1g23870	chr1:008432695	0.0	W/8432695-8434682,8434769-8435042,8435165-8435506	AT1G23870.1 CDS trehalose-phosphatase/synthase 9 [TAIR10] CDS gene_syn ATTPS9, T23E23.3, T23E23_3, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 gene TPS9 function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. go_process trehalose biosynthetic process|GO:0005992||IEA go_process metabolic process|GO:0008152||IEA go_process trehalose biosynthetic process|GO:0005992||ISS go_function trehalose-phosphatase activity|GO:0004805||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS product trehalose-phosphatase/synthase 9 note trehalose-phosphatase/synthase 9 (TPS9); FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphatase synthase S8 (TAIR:AT1G70290.1); Has 4900 Blast hits to 4828 proteins in 1062 species: Archae - 56; Bacteria - 2863; Metazoa - 236; Fungi - 655; Plants - 621; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink). protein_id AT1G23870.1p transcript_id AT1G23870.1 protein_id AT1G23870.1p transcript_id AT1G23870.1
At1g23880	chr1:008436125	0.0	W/8436125-8436392,8436491-8436577,8436672-8436848,8437238-8437408,8437498-8437710,8437822-8437910,8438004-8438636	AT1G23880.1 CDS NHL domain-containing protein [TAIR10] CDS gene_syn T23E23.5, T23E23_5 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product NHL domain-containing protein note NHL domain-containing protein; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G70280.2); Has 2830 Blast hits to 1270 proteins in 217 species: Archae - 77; Bacteria - 1235; Metazoa - 81; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 1241 (source: NCBI BLink). protein_id AT1G23880.1p transcript_id AT1G23880.1 protein_id AT1G23880.1p transcript_id AT1G23880.1
AT1G23880	chr1:008436689	0.0	W/8436689-8436848,8437238-8437408,8437498-8437710,8437822-8437910,8438004-8438636	AT1G23880.2 AT1G23880.2 CDS NHL domain-containing protein
At1g23890	chr1:008438900	0.0	C/8438900-8439412,8439498-8439595,8439681-8439881,8440013-8440177,8440494-8440664,8440749-8440803	AT1G23890.2 CDS NHL domain-containing protein [TAIR10] CDS gene_syn T23E23.6, T23E23_6 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product NHL domain-containing protein note NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat. subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23890.2p transcript_id AT1G23890.2 protein_id AT1G23890.2p transcript_id AT1G23890.2
At1g23890	chr1:008439321	0.0	C/8439321-8439416,8439498-8439595,8439681-8439881,8440013-8440177,8440494-8440664,8440749-8440803	AT1G23890.1 CDS NHL domain-containing protein [TAIR10] CDS gene_syn T23E23.6, T23E23_6 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product NHL domain-containing protein note NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat. subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 3260 Blast hits to 1426 proteins in 249 species: Archae - 112; Bacteria - 1411; Metazoa - 144; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 1403 (source: NCBI BLink). protein_id AT1G23890.1p transcript_id AT1G23890.1 protein_id AT1G23890.1p transcript_id AT1G23890.1
At1g23900	chr1:008441379	0.0	W/8441379-8441410,8441768-8442070,8442246-8442387,8442486-8442659,8442924-8443103,8443628-8443782,8444017-8444107,8444211-8444374,8444508-8444562,8444715-8444837,8444923-8445018,8445145-8445272,8445519-8445623,8445724-8445986,8446147-8446389,8446479-8446654,8446776-8446880,8447057-8447152	AT1G23900.1 CDS gamma-adaptin 1 [TAIR10] CDS gene_syn GAMMA-ADAPTIN 1, Gamma-ADR, Gamma-adaptin, gamma-adaptin 1 gene GAMMA-ADAPTIN 1 function Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane go_function binding|GO:0005488||IEA go_function protein transporter activity|GO:0008565||IEA go_component AP-1 adaptor complex|GO:0030121|10229581|ISS go_process vesicle-mediated transport|GO:0016192|10229581|ISS go_function clathrin binding|GO:0030276||ISS product gamma-adaptin 1 note gamma-adaptin 1 (GAMMA-ADAPTIN 1); FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: vesicle-mediated transport; LOCATED IN: AP-1 adaptor complex; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-1, gamma subunit (TAIR:AT1G60070.1); Has 3543 Blast hits to 3448 proteins in 308 species: Archae - 0; Bacteria - 4; Metazoa - 1517; Fungi - 967; Plants - 387; Viruses - 0; Other Eukaryotes - 668 (source: NCBI BLink). protein_id AT1G23900.1p transcript_id AT1G23900.1 protein_id AT1G23900.1p transcript_id AT1G23900.1
At1g23900	chr1:008441379	0.0	W/8441379-8441410,8441768-8442070,8442246-8442387,8442486-8442659,8442924-8443103,8443628-8443782,8444017-8444107,8444211-8444374,8444508-8444562,8444715-8444837,8444923-8445018,8445145-8445272,8445519-8445623,8445724-8445986,8446147-8446389,8446479-8446654,8446776-8446880,8447057-8447152	AT1G23900.2 CDS gamma-adaptin 1 [TAIR10] CDS gene_syn GAMMA-ADAPTIN 1, Gamma-ADR, Gamma-adaptin, gamma-adaptin 1 gene GAMMA-ADAPTIN 1 function Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane go_function binding|GO:0005488||IEA go_function protein transporter activity|GO:0008565||IEA go_component AP-1 adaptor complex|GO:0030121|10229581|ISS go_process vesicle-mediated transport|GO:0016192|10229581|ISS go_function clathrin binding|GO:0030276||ISS product gamma-adaptin 1 note gamma-adaptin 1 (GAMMA-ADAPTIN 1); FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: vesicle-mediated transport; LOCATED IN: AP-1 adaptor complex; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-1, gamma subunit (TAIR:AT1G60070.1); Has 3543 Blast hits to 3448 proteins in 308 species: Archae - 0; Bacteria - 4; Metazoa - 1517; Fungi - 967; Plants - 387; Viruses - 0; Other Eukaryotes - 668 (source: NCBI BLink). protein_id AT1G23900.2p transcript_id AT1G23900.2 protein_id AT1G23900.2p transcript_id AT1G23900.2
AT1G23900	chr1:008441772	0.0	W/8441772-8442070,8442246-8442387,8442486-8442659,8442924-8443103,8443628-8443782,8444017-8444107,8444211-8444374,8444508-8444562,8444715-8444837,8444923-8445018,8445145-8445272,8445519-8445623,8445724-8445986,8446147-8446389,8446479-8446654,8446776-8446880,8447057-8447152	AT1G23900.3 AT1G23900.3 CDS gamma-adaptin 1
At1g23910	chr1:008451068	0.0	C/8451068-8451289	AT1G23910.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn T23E23.8, T23E23_8 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G24000.1); Has 66 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23910.1p transcript_id AT1G23910.1 protein_id AT1G23910.1p transcript_id AT1G23910.1
At1g23920	chr1:008454200	0.0	W/8454200-8456566	AT1G23920.1 [TAIR10] mRNA
At1g23920	chr1:008454200	0.0	W/8454200-8456566	AT1G23920 [TAIR10] TE pseudo gene_syn T23E23.9 note Transposable element gene, Mutator-like transposase family, has a 3.6e-77 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)
AT1G23915	chr1:008457676	0.0	W/8457676-8457855,8457935-8458183	AT1G23915.1 AT1G23915.1 CDS hypothetical protein
At1g23930	chr1:008459082	0.0	C/8459082-8459272,8459348-8459882,8459953-8460111,8460192-8461001,8461206-8461460	AT1G23930.1 [TAIR10] mRNA
At1g23930	chr1:008459082	0.0	C/8459082-8461460	AT1G23930 [TAIR10] TE pseudo gene_syn T23E23.10, T23E23_10 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37390.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47330.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)
AT1G23935	chr1:008461939	0.0	W/8461939-8462007,8462145-8462238,8462316-8462381,8462484-8462524,8462655-8462750,8462828-8462908,8463035-8463100,8463203-8463271,8463559-8463669,8463770-8463862,8463962-8464008,8464116-8464191,8464543-8464824,8464954-8465895,8466016-8466146,8466383-8466487,8466588-8466799,8466957-8466990,8467362-8467637,8467807-8467948,8468038-8468211,8468460-8468639,8468718-8468845,8469055-8469159,8469268-8469346	AT1G23935.2 AT1G23935.2 CDS apoptosis inhibitory protein
AT1G23935	chr1:008461939	0.0	W/8461939-8462007,8462145-8462238,8462316-8462381,8462484-8462524,8462655-8462750,8462828-8462908,8463035-8463100,8463203-8463271,8463559-8463669,8463770-8463862,8463962-8464008,8464116-8464191,8464543-8464824,8464954-8465895,8466019-8466146,8466383-8466487,8466588-8466799,8466957-8466990,8467362-8467637,8467807-8467948,8468038-8468211,8468460-8468639,8468718-8468845,8469055-8469159,8469268-8469346	AT1G23935.3 AT1G23935.3 CDS apoptosis inhibitory protein
At1g23935	chr1:008461939	0.0	W/8461939-8462007,8462145-8462238,8462316-8462381,8462484-8462524,8462655-8462750,8462828-8462908,8463035-8463100,8463203-8463271,8463559-8463669,8463770-8463862,8463962-8464008,8464116-8464320,8464439-8464515,8464596-8464824,8464954-8465895,8466019-8466146,8466383-8466487,8466588-8466799,8466957-8466990,8467362-8467637,8467807-8467948,8468038-8468211,8468460-8468639,8468718-8468845,8469055-8469159,8469268-8469346	AT1G23935.1 CDS apoptosis inhibitory protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 219 Blast hits to 219 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G23935.1p transcript_id AT1G23935.1 protein_id AT1G23935.1p transcript_id AT1G23935.1
At1g23940	chr1:008466094	0.0	W/8466094-8466146,8466383-8466487,8466588-8466799,8466957-8466990,8467362-8467637,8467807-8467948,8468038-8468211,8468460-8468639,8468718-8468845,8469055-8469159,8469268-8469346	AT1G23940.1 [TAIR10] CDS gene_syn T23E23.12, T23E23_12 go_component membrane coat|GO:0030117||IEA go_process intracellular protein transport|GO:0006886||IEA go_process vesicle-mediated transport|GO:0016192||IEA go_function binding|GO:0005488||IEA product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: gamma-adaptin 1 (TAIR:AT1G23900.2); Has 2143 Blast hits to 1692 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 982; Fungi - 444; Plants - 311; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink). protein_id AT1G23940.1p transcript_id AT1G23940.1 protein_id AT1G23940.1p transcript_id AT1G23940.1
At1g23950	chr1:008469712	0.0	C/8469712-8470044,8470135-8470221,8470352-8470512,8470684-8470897,8471003-8471158,8471273-8471353	AT1G23950.5 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn T23E23.13, T23E23_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2); Has 199 Blast hits to 198 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23950.5p transcript_id AT1G23950.5 protein_id AT1G23950.5p transcript_id AT1G23950.5
At1g23950	chr1:008469712	0.0	C/8469712-8470044,8470135-8470221,8470352-8470602,8470684-8470897,8471003-8471158,8471273-8471353	AT1G23950.2 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn T23E23.13, T23E23_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23950.2p transcript_id AT1G23950.2 protein_id AT1G23950.2p transcript_id AT1G23950.2
At1g23950	chr1:008469712	0.0	C/8469712-8470044,8470135-8470221,8470352-8470602,8470699-8470897,8471003-8471158,8471273-8471353	AT1G23950.3 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn T23E23.13, T23E23_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23950.3p transcript_id AT1G23950.3 protein_id AT1G23950.3p transcript_id AT1G23950.3
At1g23950	chr1:008470105	0.0	C/8470105-8470221,8470352-8470602,8470684-8470897,8471003-8471158,8471273-8471353	AT1G23950.1 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn T23E23.13, T23E23_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2); Has 156 Blast hits to 155 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23950.1p transcript_id AT1G23950.1 protein_id AT1G23950.1p transcript_id AT1G23950.1
At1g23950	chr1:008470164	0.0	C/8470164-8470215,8470347-8470602,8470684-8470897,8471003-8471158,8471273-8471353	AT1G23950.4 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn T23E23.13, T23E23_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2); Has 109 Blast hits to 108 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23950.4p transcript_id AT1G23950.4 protein_id AT1G23950.4p transcript_id AT1G23950.4
At1g23960	chr1:008478627	0.0	C/8478627-8478896,8478992-8479081,8479162-8479289,8479378-8479579,8479672-8479827,8479944-8480006	AT1G23960.1 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn T23E23.14, T23E23_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.1); Has 197 Blast hits to 196 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23960.1p transcript_id AT1G23960.1 protein_id AT1G23960.1p transcript_id AT1G23960.1
At1g23960	chr1:008478627	0.0	C/8478627-8478896,8478992-8479081,8479162-8479289,8479378-8479579,8479672-8479827,8479944-8480006	AT1G23960.2 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn T23E23.14, T23E23_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G23960.2p transcript_id AT1G23960.2 protein_id AT1G23960.2p transcript_id AT1G23960.2
At1g23965	chr1:008480570	0.0	C/8480570-8480923	AT1G23965.1 CDS transcription factor, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70270.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23965.1p transcript_id AT1G23965.1 protein_id AT1G23965.1p transcript_id AT1G23965.1
At1g23970	chr1:008482145	0.0	C/8482145-8482486,8482578-8482664,8482759-8483009,8483091-8483304,8483409-8483564,8483743-8483829	AT1G23970.2 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn T23E23.26, T23E23_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23950.2); Has 199 Blast hits to 195 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23970.2p transcript_id AT1G23970.2 protein_id AT1G23970.2p transcript_id AT1G23970.2
At1g23970	chr1:008482145	0.0	C/8482145-8482486,8482578-8482664,8482759-8483009,8483106-8483304,8483409-8483564,8483743-8483829	AT1G23970.1 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn T23E23.26, T23E23_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23950.3); Has 197 Blast hits to 195 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G23970.1p transcript_id AT1G23970.1 protein_id AT1G23970.1p transcript_id AT1G23970.1
At1g23980	chr1:008484879	0.0	C/8484879-8485988	AT1G23980.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn T23E23.15, T23E23_15 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G40250.1); Has 9283 Blast hits to 9263 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2141; Fungi - 689; Plants - 5036; Viruses - 72; Other Eukaryotes - 1339 (source: NCBI BLink). protein_id AT1G23980.1p transcript_id AT1G23980.1 protein_id AT1G23980.1p transcript_id AT1G23980.1
AT1G23985	chr1:008485644	0.0	W/8485644-8485676,8485792-8485884,8485902-8485949,8486979-8487029	AT1G23985.1 AT1G23985.1 CDS hypothetical protein
AT1G23995	chr1:008487048	0.0	C/8487048-8487347	AT1G23995.1 AT1G23995.1 CDS transcription factor, putative
At1g23990	chr1:008490634	0.0	W/8490634-8492730	AT1G23990.1 [TAIR10] mRNA
At1g23990	chr1:008490634	0.0	W/8490634-8492730	AT1G23990 [TAIR10] TE pseudo gene_syn T23E23.16, T23E23_16 note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.0e-30 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
At1g24000	chr1:008496057	0.0	C/8496057-8496319,8496421-8496526	AT1G24000.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn T23E23.17, T23E23_17 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, pedicel, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G23910.1); Has 193 Blast hits to 168 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24000.1p transcript_id AT1G24000.1 protein_id AT1G24000.1p transcript_id AT1G24000.1
At1g24010	chr1:008498960	0.0	C/8498960-8499282,8499362-8499464	AT1G24010.1 CDS Polyketide cyclase/dehydrase and lipid transport superfamily protein [TAIR10] CDS gene_syn T23E23.27, T23E23_27 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Polyketide cyclase/dehydrase and lipid transport superfamily protein note Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, root, pedicel, guard cell, carpel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G24000.1); Has 32 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24010.1p transcript_id AT1G24010.1 protein_id AT1G24010.1p transcript_id AT1G24010.1
At1g24020	chr1:008500653	0.0	C/8500653-8500933,8501272-8501458	AT1G24020.1 CDS MLP-like protein 423 [TAIR10] CDS gene_syn MLP-like protein 423, MLP423, T23E23.28, T23E23_28 gene MLP423 go_component membrane|GO:0016020|17432890|IDA go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA product MLP-like protein 423 note MLP-like protein 423 (MLP423); INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP-like protein 28 (TAIR:AT1G70830.3); Has 1440 Blast hits to 1404 proteins in 125 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 1432; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G24020.1p transcript_id AT1G24020.1 protein_id AT1G24020.1p transcript_id AT1G24020.1
At1g24020	chr1:008500653	0.0	C/8500653-8500933,8501272-8501458	AT1G24020.2 CDS MLP-like protein 423 [TAIR10] CDS gene_syn MLP-like protein 423, MLP423, T23E23.28, T23E23_28 gene MLP423 go_process defense response|GO:0006952||IEA go_process response to biotic stimulus|GO:0009607||IEA product MLP-like protein 423 note MLP-like protein 423 (MLP423); INVOLVED IN: response to biotic stimulus, defense response; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP-like protein 28 (TAIR:AT1G70830.3). protein_id AT1G24020.2p transcript_id AT1G24020.2 protein_id AT1G24020.2p transcript_id AT1G24020.2
At1g24030	chr1:008503394	0.0	W/8503394-8503460,8503602-8503789,8503908-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn T23E23.18, T23E23_18 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G18610.2); Has 120365 Blast hits to 119013 proteins in 4490 species: Archae - 114; Bacteria - 14164; Metazoa - 43937; Fungi - 10244; Plants - 33641; Viruses - 447; Other Eukaryotes - 17818 (source: NCBI BLink). protein_id AT1G24030.2p transcript_id AT1G24030.2 protein_id AT1G24030.2p transcript_id AT1G24030.2
AT1G24030	chr1:008503394	0.0	W/8503394-8503460,8503602-8503789,8503908-8504106,8504175-8504338,8504428-8504532,8504731-8504871	AT1G24030.6 AT1G24030.6 CDS Protein kinase superfamily protein
AT1G24030	chr1:008503394	0.0	W/8503394-8503460,8503602-8503789,8503908-8504106,8504175-8504338,8504428-8504577	AT1G24030.5 AT1G24030.5 CDS Protein kinase superfamily protein
At1g24030	chr1:008503394	0.0	W/8503394-8503502,8503602-8503789,8503908-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn T23E23.18, T23E23_18 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G18610.2); Has 120319 Blast hits to 118974 proteins in 4454 species: Archae - 114; Bacteria - 14029; Metazoa - 43843; Fungi - 10580; Plants - 33748; Viruses - 447; Other Eukaryotes - 17558 (source: NCBI BLink). protein_id AT1G24030.1p transcript_id AT1G24030.1 protein_id AT1G24030.1p transcript_id AT1G24030.1
AT1G24030	chr1:008503697	0.0	W/8503697-8503789,8503908-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.7 AT1G24030.7 CDS Protein kinase superfamily protein
AT1G24030	chr1:008503926	0.0	W/8503926-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.3 AT1G24030.3 CDS Protein kinase superfamily protein
AT1G24030	chr1:008503926	0.0	W/8503926-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.4 AT1G24030.4 CDS Protein kinase superfamily protein
AT1G24030	chr1:008503926	0.0	W/8503926-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.8 AT1G24030.8 CDS Protein kinase superfamily protein
At1g24040	chr1:008505794	0.0	C/8505794-8506753	AT1G24040.1 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein [TAIR10] CDS gene_syn T23E23.19, T23E23_19 go_component chloroplast|GO:0009507||IEA go_process metabolic process|GO:0008152||ISS go_function N-acetyltransferase activity|GO:0008080||ISS product Acyl-CoA N-acyltransferases (NAT) superfamily protein note Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 119 Blast hits to 119 proteins in 41 species: Archae - 9; Bacteria - 28; Metazoa - 4; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G24040.1p transcript_id AT1G24040.1 protein_id AT1G24040.1p transcript_id AT1G24040.1
At1g24040	chr1:008505794	0.0	C/8505794-8506753	AT1G24040.2 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein [TAIR10] CDS gene_syn T23E23.19, T23E23_19 go_component chloroplast|GO:0009507||IEA go_process metabolic process|GO:0008152||ISS go_function N-acetyltransferase activity|GO:0008080||ISS product Acyl-CoA N-acyltransferases (NAT) superfamily protein note Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 119 Blast hits to 119 proteins in 41 species: Archae - 9; Bacteria - 28; Metazoa - 4; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). protein_id AT1G24040.2p transcript_id AT1G24040.2 protein_id AT1G24040.2p transcript_id AT1G24040.2
AT1G24040	chr1:008505794	0.0	C/8505794-8506753	AT1G24040.3 AT1G24040.3 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein
AT1G24040	chr1:008505794	0.0	C/8505794-8506753	AT1G24040.4 AT1G24040.4 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein
At1g24050	chr1:008507057	0.0	W/8507057-8507210,8507317-8507482,8507578-8507658,8508143-8508266,8508398-8508439	AT1G24050.1 CDS RNA-processing, Lsm domain [TAIR10] CDS gene_syn T23E23.20, T23E23_20 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product RNA-processing, Lsm domain note RNA-processing, Lsm domain; CONTAINS InterPro DOMAIN/s: RNA-processing, Lsm domain (InterPro:IPR019181); BEST Arabidopsis thaliana protein match is: RNA-processing, Lsm domain (TAIR:AT1G70220.1); Has 228 Blast hits to 228 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 53; Plants - 56; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). protein_id AT1G24050.1p transcript_id AT1G24050.1 protein_id AT1G24050.1p transcript_id AT1G24050.1
At1g24060	chr1:008509739	0.0	C/8509739-8510056	AT1G24060.1 CDS hypothetical protein [TAIR10] CDS gene_syn T23E23.21, T23E23_21 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24060.1p transcript_id AT1G24060.1 protein_id AT1G24060.1p transcript_id AT1G24060.1
At1g24062	chr1:008510502	0.0	C/8510502-8510725,8510824-8510896	AT1G24062.1 CDS Cysteine-rich protein [TAIR10] CDS function Encodes a defensin-like (DEFL) family protein. go_component endomembrane system|GO:0012505||IEA product Cysteine-rich protein note Cysteine-rich protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Cysteine-rich protein (TAIR:AT5G54220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G24062.1p transcript_id AT1G24062.1 protein_id AT1G24062.1p transcript_id AT1G24062.1
At1g24068	chr1:008515506	0.0	W/8515506-8515971	AT1G24068.1 [TAIR10] ncRNA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G24068.1
At1g24070	chr1:008516437	0.0	C/8516437-8516584,8516660-8516851,8516948-8517147,8517575-8517688,8518079-8518215,8518304-8518414,8518629-8518881,8518965-8519063,8519231-8519569,8519669-8519734	AT1G24070.1 CDS cellulose synthase-like A10 [TAIR10] CDS gene_syn ATCSLA10, CELLULOSE SYNTHASE LIKE A10, CSLA10, T23E23.23, T23E23_23, cellulose synthase-like A10 gene CSLA10 function encodes a gene similar to cellulose synthase go_component endomembrane system|GO:0012505||IEA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function cellulose synthase activity|GO:0016759||ISS product cellulose synthase-like A10 note cellulose synthase-like A10 (CSLA10); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G13410.1); Has 5025 Blast hits to 5019 proteins in 1468 species: Archae - 208; Bacteria - 3931; Metazoa - 29; Fungi - 85; Plants - 483; Viruses - 11; Other Eukaryotes - 278 (source: NCBI BLink). protein_id AT1G24070.1p transcript_id AT1G24070.1 protein_id AT1G24070.1p transcript_id AT1G24070.1
AT1G24070	chr1:008517473	0.0	C/8517473-8517688,8518079-8518215,8518304-8518414,8518629-8518881,8518965-8519063,8519231-8519569,8519669-8519734	AT1G24070.2 AT1G24070.2 CDS cellulose synthase-like A10
At1g24080	chr1:008520290	0.0	C/8520290-8520363	AT1G24080.1 [TAIR10] tRNA gene_syn 51237.TRNA-VAL-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Val (anticodon: AAC) transcript_id AT1G24080.1
At1g24090	chr1:008520834	0.0	W/8520834-8521160,8521251-8521409,8521550-8521624,8521736-8521816,8521923-8522015,8522090-8522233,8522339-8522446,8522571-8522622,8522715-8522737	AT1G24090.1 CDS RNase H family protein [TAIR10] CDS gene_syn T23E23.25 go_function nucleic acid binding|GO:0003676||IEA go_function ribonuclease H activity|GO:0004523||IEA go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS go_function ribonuclease H activity|GO:0004523||ISS product RNase H family protein note RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species: Archae - 71; Bacteria - 1533; Metazoa - 7; Fungi - 2; Plants - 1270; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink). protein_id AT1G24090.1p transcript_id AT1G24090.1 protein_id AT1G24090.1p transcript_id AT1G24090.1
At1g24095	chr1:008523345	0.0	W/8523345-8523606,8524034-8524201,8524479-8524690	AT1G24095.1 CDS Putative thiol-disulphide oxidoreductase DCC [TAIR10] CDS go_component mitochondrion|GO:0005739||IEA product Putative thiol-disulphide oxidoreductase DCC note Putative thiol-disulphide oxidoreductase DCC; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); BEST Arabidopsis thaliana protein match is: Putative thiol-disulphide oxidoreductase DCC (TAIR:AT1G52590.1). protein_id AT1G24095.1p transcript_id AT1G24095.1 protein_id AT1G24095.1p transcript_id AT1G24095.1
AT1G24095	chr1:008523543	0.0	W/8523543-8523606,8524034-8524201,8524479-8524690	AT1G24095.2 AT1G24095.2 CDS Putative thiol-disulphide oxidoreductase DCC
At1g24100	chr1:008525547	0.0	C/8525547-8526272,8526354-8527010	AT1G24100.1 CDS UDP-glucosyl transferase 74B1 [TAIR10] CDS gene_syn F3I6.2, F3I6_2, UDP-glucosyl transferase 74B1, UGT74B1 gene UGT74B1 function Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis go_component cellular_component|GO:0005575||ND go_process glucosinolate biosynthetic process|GO:0019761|15584955|IMP go_process defense response to bacterium|GO:0042742|19095898|IMP go_process defense response by callose deposition in cell wall|GO:0052544|19095898|IMP go_function UDP-glycosyltransferase activity|GO:0008194||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function thiohydroximate beta-D-glucosyltransferase activity|GO:0047251|15584955|IDA product UDP-glucosyl transferase 74B1 note UDP-glucosyl transferase 74B1 (UGT74B1); CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glycosyltransferase 74 F1 (TAIR:AT2G43840.1); Has 7754 Blast hits to 7677 proteins in 493 species: Archae - 0; Bacteria - 488; Metazoa - 2030; Fungi - 39; Plants - 5027; Viruses - 105; Other Eukaryotes - 65 (source: NCBI BLink). protein_id AT1G24100.1p transcript_id AT1G24100.1 protein_id AT1G24100.1p transcript_id AT1G24100.1
At1g24110	chr1:008527838	0.0	W/8527838-8528818	AT1G24110.1 CDS Peroxidase superfamily protein [TAIR10] CDS gene_syn F3I6.3, F3I6_3 go_component endomembrane system|GO:0012505||IEA go_process response to oxidative stress|GO:0006979||IEA go_process oxidation reduction|GO:0055114||IEA go_function peroxidase activity|GO:0004601||IEA go_function heme binding|GO:0020037||IEA go_function peroxidase activity|GO:0004601||ISS product Peroxidase superfamily protein note Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G47000.1); Has 4783 Blast hits to 4756 proteins in 324 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 401; Plants - 4296; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). protein_id AT1G24110.1p transcript_id AT1G24110.1 protein_id AT1G24110.1p transcript_id AT1G24110.1
At1g24120	chr1:008529283	0.0	C/8529283-8529579,8529735-8529937,8530058-8530166,8530260-8530349,8530471-8530521,8530606-8530710,8530809-8530920,8531011-8531093,8531381-8531504,8531810-8531946	AT1G24120.1 CDS ARG1-like 1 [TAIR10] CDS gene_syn ARG1-like 1, ARL1, F3I6.4, F3I6_4 gene ARL1 function encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined. go_process protein folding|GO:0006457||IEA go_function heat shock protein binding|GO:0031072||IEA go_function unfolded protein binding|GO:0051082||IEA go_component cellular_component|GO:0005575||ND go_process protein folding|GO:0006457||ISS product ARG1-like 1 note ARG1-like 1 (ARL1); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARG1-like 2 (TAIR:AT1G59980.1); Has 24851 Blast hits to 24751 proteins in 3316 species: Archae - 174; Bacteria - 9800; Metazoa - 4410; Fungi - 2460; Plants - 2464; Viruses - 13; Other Eukaryotes - 5530 (source: NCBI BLink). protein_id AT1G24120.1p transcript_id AT1G24120.1 protein_id AT1G24120.1p transcript_id AT1G24120.1
At1g24130	chr1:008534183	0.0	C/8534183-8535430	AT1G24130.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn F3I6.5, F3I6_5 go_component chloroplast|GO:0009507||IEA go_component heterotrimeric G-protein complex|GO:0005834||ISS go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50120.1); Has 45824 Blast hits to 22056 proteins in 757 species: Archae - 54; Bacteria - 6419; Metazoa - 16905; Fungi - 10404; Plants - 5900; Viruses - 0; Other Eukaryotes - 6142 (source: NCBI BLink). protein_id AT1G24130.1p transcript_id AT1G24130.1 protein_id AT1G24130.1p transcript_id AT1G24130.1
At1g24140	chr1:008536131	0.0	C/8536131-8537285	AT1G24140.1 CDS Matrixin family protein [TAIR10] CDS gene_syn F3I6.6, F3I6_6 go_process proteolysis|GO:0006508||IEA go_process metabolic process|GO:0008152||IEA go_function metalloendopeptidase activity|GO:0004222||IEA go_function metallopeptidase activity|GO:0008237||IEA go_function zinc ion binding|GO:0008270||IEA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process proteolysis|GO:0006508||ISS go_function metalloendopeptidase activity|GO:0004222||ISS product Matrixin family protein note Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrix metalloproteinase (TAIR:AT1G70170.1); Has 2621 Blast hits to 2428 proteins in 195 species: Archae - 3; Bacteria - 89; Metazoa - 2200; Fungi - 4; Plants - 185; Viruses - 42; Other Eukaryotes - 98 (source: NCBI BLink). protein_id AT1G24140.1p transcript_id AT1G24140.1 protein_id AT1G24140.1p transcript_id AT1G24140.1
At1g24145	chr1:008541040	0.0	W/8541040-8541148,8541339-8541616	AT1G24145.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24145.1p transcript_id AT1G24145.1 protein_id AT1G24145.1p transcript_id AT1G24145.1
At1g24147	chr1:008542522	0.0	W/8542522-8542624,8543026-8543306	AT1G24147.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24148.1); Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24147.1p transcript_id AT1G24147.1 protein_id AT1G24147.1p transcript_id AT1G24147.1
At1g24148	chr1:008544572	0.0	W/8544572-8544629,8545020-8545309	AT1G24148.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24147.1). protein_id AT1G24148.1p transcript_id AT1G24148.1 protein_id AT1G24148.1p transcript_id AT1G24148.1
At1g24148	chr1:008545028	0.0	W/8545028-8545309	AT1G24148.2 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. protein_id AT1G24148.2p transcript_id AT1G24148.2 protein_id AT1G24148.2p transcript_id AT1G24148.2
AT1G24150	chr1:008549518	0.0	W/8549518-8550536,8550639-8551212	AT1G24150.2 AT1G24150.2 CDS formin homologue 4
At1g24150	chr1:008549518	0.0	W/8549518-8550536,8550639-8551907	AT1G24150.1 CDS formin homologue 4 [TAIR10] CDS gene_syn ATFH4, F3I6.8, F3I6_8, FH4, FORMIN HOMOLOGUE 4, formin homologue 4 gene FH4 function Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin. go_component plasma membrane|GO:0005886|17317660|IDA go_component cell-cell junction|GO:0005911|16313636|IDA go_process actin filament polymerization|GO:0030041|16313636|IDA go_function actin binding|GO:0003779|12417149|ISS go_function actin binding|GO:0003779|15256004|ISS go_function actin binding|GO:0003779||ISS go_function protein binding|GO:0005515|16313636|IPI product formin homologue 4 note formin homologue 4 (FH4); FUNCTIONS IN: actin binding, protein binding; INVOLVED IN: actin filament polymerization; LOCATED IN: cell-cell junction, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin 8 (TAIR:AT1G70140.1); Has 28239 Blast hits to 15205 proteins in 945 species: Archae - 44; Bacteria - 3418; Metazoa - 10057; Fungi - 3019; Plants - 7022; Viruses - 1317; Other Eukaryotes - 3362 (source: NCBI BLink). protein_id AT1G24150.1p transcript_id AT1G24150.1 protein_id AT1G24150.1p transcript_id AT1G24150.1
At1g24159	chr1:008552775	0.0	W/8552775-8552896,8553085-8553385	AT1G24159.1 CDS Interleukin-1 receptor-associated kinase 4 protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Interleukin-1 receptor-associated kinase 4 protein note Interleukin-1 receptor-associated kinase 4 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT1G70130.1); Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24159.1p transcript_id AT1G24159.1 protein_id AT1G24159.1p transcript_id AT1G24159.1
At1g24160	chr1:008553669	0.0	C/8553669-8553785,8553858-8553914,8554001-8554106,8554208-8554266,8554344-8554784,8554889-8555689,8555789-8555830	AT1G24160.1 CDS triadin [TAIR10] CDS gene_syn F3I6.9, F3I6_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3); Has 5230 Blast hits to 4162 proteins in 477 species: Archae - 30; Bacteria - 540; Metazoa - 2022; Fungi - 429; Plants - 280; Viruses - 32; Other Eukaryotes - 1897 (source: NCBI BLink). protein_id AT1G24160.1p transcript_id AT1G24160.1 protein_id AT1G24160.1p transcript_id AT1G24160.1
At1g24160	chr1:008553669	0.0	C/8553669-8553785,8553858-8553914,8554001-8554106,8554208-8554266,8554344-8554784,8554889-8555689,8555789-8555830	AT1G24160.2 CDS triadin [TAIR10] CDS gene_syn F3I6.9, F3I6_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3). protein_id AT1G24160.2p transcript_id AT1G24160.2 protein_id AT1G24160.2p transcript_id AT1G24160.2
At1g24170	chr1:008557451	0.0	C/8557451-8558632	AT1G24170.1 CDS Nucleotide-diphospho-sugar transferases superfamily protein [TAIR10] CDS gene_syn F3I6.10, F3I6_10, GALACTURONOSYLTRANSFERASE-LIKE 8, GATL8, LGT9 gene LGT9 function Encodes a protein with putative galacturonosyltransferase activity. go_component endomembrane system|GO:0012505||IEA go_process carbohydrate biosynthetic process|GO:0016051||ISS go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS product Nucleotide-diphospho-sugar transferases superfamily protein note LGT9; FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: glucosyl transferase family 8 (TAIR:AT1G70090.2); Has 2080 Blast hits to 2070 proteins in 453 species: Archae - 0; Bacteria - 1044; Metazoa - 227; Fungi - 4; Plants - 722; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). protein_id AT1G24170.1p transcript_id AT1G24170.1 protein_id AT1G24170.1p transcript_id AT1G24170.1
At1g24180	chr1:008560777	0.0	C/8560777-8560821,8560939-8561004,8561087-8561140,8561248-8561319,8561413-8561508,8562054-8562131,8562529-8562608,8562692-8563382	AT1G24180.1 CDS Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [TAIR10] CDS gene_syn F3I6.11, F3I6_11, IAA-CONJUGATE-RESISTANT 4, IAR4 gene IAR4 function Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900 go_component mitochondrion|GO:0005739|18385124|IDA go_process response to salt stress|GO:0009651|17916636|IEP go_component nucleus|GO:0005634|18433157|IDA go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component cytosol|GO:0005829|18433157|IDA go_process metabolic process|GO:0008152||ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS go_function zinc ion binding|GO:0008270|20018591|IDA go_function cobalt ion binding|GO:0050897|20018591|IDA product Thiamin diphosphate-binding fold (THDP-binding) superfamily protein note IAA-CONJUGATE-RESISTANT 4 (IAR4); FUNCTIONS IN: cobalt ion binding, pyruvate dehydrogenase (acetyl-transferring) activity, zinc ion binding; INVOLVED IN: response to salt stress, metabolic process; LOCATED IN: cytosol, mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1); Has 9959 Blast hits to 9956 proteins in 1842 species: Archae - 124; Bacteria - 6117; Metazoa - 560; Fungi - 255; Plants - 209; Viruses - 0; Other Eukaryotes - 2694 (source: NCBI BLink). protein_id AT1G24180.1p transcript_id AT1G24180.1 protein_id AT1G24180.1p transcript_id AT1G24180.1
AT1G24190	chr1:008563706	0.0	C/8563706-8563786,8563903-8563986,8564086-8564188,8564282-8564448,8564542-8564694,8564786-8564924,8565013-8565113,8565216-8565827,8566069-8566154,8566249-8566893,8566970-8567224,8567337-8567464,8567602-8567756,8567850-8568064,8568235-8568264,8568353-8568428,8568507-8568637,8568735-8569029,8569119-8569253,8569330-8569428,8569515-8569701,8569788-8569927	AT1G24190.3 AT1G24190.3 CDS SIN3-like 3
At1g24190	chr1:008563858	0.0	C/8563858-8563986,8564086-8564188,8564282-8564448,8564542-8564694,8564786-8564924,8565013-8565113,8565216-8565827,8566069-8566154,8566249-8566893,8566970-8567224,8567337-8567464,8567602-8567756,8567850-8568051,8568210-8568264,8568353-8568428,8568507-8568637,8568735-8569029,8569119-8569253,8569330-8569428,8569515-8569701,8569788-8569927	AT1G24190.1 CDS SIN3-like 3 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SIN3 HOMOLOG, ATSIN3, F3I6.12, F3I6_12, SIN3, SIN3-like 3, SNL3 gene SNL3 function Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to abscisic acid stimulus|GO:0009737|15994908|IMP go_process negative regulation of transcription|GO:0016481|15994908|IEP go_function transcription repressor activity|GO:0016564|15994908|IDA product SIN3-like 3 note SIN3-like 3 (SNL3); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: negative regulation of transcription, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1); Has 3268 Blast hits to 1788 proteins in 336 species: Archae - 19; Bacteria - 223; Metazoa - 1240; Fungi - 789; Plants - 447; Viruses - 29; Other Eukaryotes - 521 (source: NCBI BLink). protein_id AT1G24190.1p transcript_id AT1G24190.1 protein_id AT1G24190.1p transcript_id AT1G24190.1
At1g24190	chr1:008563858	0.0	C/8563858-8563986,8564086-8564188,8564282-8564448,8564542-8564694,8564786-8564924,8565013-8565113,8565216-8565827,8566069-8566154,8566249-8566893,8566970-8567224,8567337-8567464,8567602-8567756,8567850-8568064,8568235-8568264,8568353-8568428,8568507-8568637,8568735-8569029,8569119-8569253,8569330-8569428,8569515-8569701,8569788-8569927	AT1G24190.2 CDS SIN3-like 3 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA SIN3 HOMOLOG, ATSIN3, F3I6.12, F3I6_12, SIN3, SIN3-like 3, SNL3 gene SNL3 function Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to abscisic acid stimulus|GO:0009737|15994908|IMP go_process negative regulation of transcription|GO:0016481|15994908|IEP go_function transcription repressor activity|GO:0016564|15994908|IDA product SIN3-like 3 note SIN3-like 3 (SNL3); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: negative regulation of transcription, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1). protein_id AT1G24190.2p transcript_id AT1G24190.2 protein_id AT1G24190.2p transcript_id AT1G24190.2
At1g24200	chr1:008571173	0.0	C/8571173-8571277,8571631-8571699,8571779-8571877,8571963-8572140,8572238-8572377	AT1G24200.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F3I6.13, F3I6_13 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 3 (TAIR:AT1G24190.2); Has 1143 Blast hits to 637 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 381; Plants - 260; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). protein_id AT1G24200.1p transcript_id AT1G24200.1 protein_id AT1G24200.1p transcript_id AT1G24200.1
At1g24210	chr1:008573770	0.0	C/8573770-8573871,8573973-8574074,8574175-8574298,8574388-8574527	AT1G24210.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F3I6.14, F3I6_14 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27240.1); Has 593 Blast hits to 540 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 118; Plants - 237; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). protein_id AT1G24210.1p transcript_id AT1G24210.1 protein_id AT1G24210.1p transcript_id AT1G24210.1
At1g24212	chr1:008575876	0.0	C/8575876-8575981,8576085-8576245	AT1G24212.1 [TAIR10] pseudogene
At1g24220	chr1:008578658	0.0	C/8578658-8578762,8578845-8578946,8579072-8579495,8579592-8579753,8580065-8580167,8580583-8580676,8580759-8580860,8580948-8581464,8581574-8581866,8581974-8582166,8582274-8582413	AT1G24220.1 CDS paired amphipathic helix repeat-containing protein [TAIR10] CDS gene_syn F3I6.15, F3I6_15 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product paired amphipathic helix repeat-containing protein note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27240.1); Has 1794 Blast hits to 623 proteins in 172 species: Archae - 0; Bacteria - 12; Metazoa - 580; Fungi - 353; Plants - 743; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). protein_id AT1G24220.1p transcript_id AT1G24220.1 protein_id AT1G24220.1p transcript_id AT1G24220.1
AT1G24220	chr1:008578658	0.0	C/8578658-8578762,8578845-8578946,8579072-8579495,8579592-8579753,8580065-8580167,8580583-8580676,8580759-8580860,8580948-8581464,8581574-8581866,8581974-8582166,8582274-8582413	AT1G24220.2 AT1G24220.2 CDS paired amphipathic helix repeat-containing protein
At1g24230	chr1:008584039	0.0	C/8584039-8584143,8584224-8584325,8584421-8584595,8584708-8584920,8584993-8585135	AT1G24230.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F3I6.16, F3I6_16 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G23810.1); Has 1242 Blast hits to 659 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 390; Fungi - 362; Plants - 421; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). protein_id AT1G24230.1p transcript_id AT1G24230.1 protein_id AT1G24230.1p transcript_id AT1G24230.1
At1g24240	chr1:008586431	0.0	W/8586431-8586640,8587154-8587285,8587365-8587451,8587556-8587689,8587865-8587970	AT1G24240.1 CDS Ribosomal protein L19 family protein [TAIR10] CDS gene_syn F3I6.17, F3I6_17 go_component intracellular|GO:0005622||IEA go_component ribosome|GO:0005840||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_process ribosome biogenesis|GO:0042254||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L19 family protein note Ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19 family protein (TAIR:AT4G11630.1); Has 7931 Blast hits to 7931 proteins in 2663 species: Archae - 0; Bacteria - 5364; Metazoa - 103; Fungi - 54; Plants - 151; Viruses - 0; Other Eukaryotes - 2259 (source: NCBI BLink). protein_id AT1G24240.1p transcript_id AT1G24240.1 protein_id AT1G24240.1p transcript_id AT1G24240.1
AT1G24240	chr1:008586431	0.0	W/8586431-8586640,8587154-8587285,8587365-8587499	AT1G24240.2 AT1G24240.2 CDS Ribosomal protein L19 family protein
At1g24250	chr1:008588442	0.0	C/8588442-8588522,8588606-8588707,8588788-8588905,8589007-8589321,8589404-8589546	AT1G24250.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F3I6.18, F3I6_18 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G23810.1); Has 951 Blast hits to 563 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 221; Plants - 322; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). protein_id AT1G24250.1p transcript_id AT1G24250.1 protein_id AT1G24250.1p transcript_id AT1G24250.1
At1g24256	chr1:008592078	0.0	W/8592078-8592176,8592395-8592466,8592548-8592739,8592921-8592989	AT1G24256.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G35640.1); Has 93 Blast hits to 85 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24256.1p transcript_id AT1G24256.1 protein_id AT1G24256.1p transcript_id AT1G24256.1
At1g24260	chr1:008593790	0.0	C/8593790-8593880,8593973-8594115,8594201-8594242,8594326-8594367,8594446-8594545,8594630-8594697,8594807-8594891,8595678-8595862	AT1G24260.2 CDS K-box region and MADS-box transcription factor family protein [TAIR10] CDS gene_syn AGAMOUS-like 9, AGL9, F3I6.19, F3I6_19, SEP3, SEPALLATA3, TRANSCRIPTION FACTOR AGL9 gene SEP3 function Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. go_component nucleus|GO:0005634|14617066|IDA go_process cell fate specification|GO:0001708|10821278|IMP go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process flower development|GO:0009908|11439126|TAS go_process specification of floral organ identity|GO:0010093|10821278|IMP go_process specification of floral organ identity|GO:0010093|19385720|IMP go_process ovule development|GO:0048481|14555696|IMP go_process specification of floral organ number|GO:0048833|19385720|IMP go_function DNA binding|GO:0003677|19033361|IDA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11439126|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function protein binding|GO:0005515|14555696|IPI go_function protein binding|GO:0005515|16854969|IPI product K-box region and MADS-box transcription factor family protein note SEPALLATA3 (SEP3); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1); Has 7376 Blast hits to 7375 proteins in 917 species: Archae - 0; Bacteria - 2; Metazoa - 632; Fungi - 302; Plants - 6358; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). protein_id AT1G24260.2p transcript_id AT1G24260.2 protein_id AT1G24260.2p transcript_id AT1G24260.2
At1g24260	chr1:008593790	0.0	C/8593790-8593880,8593973-8594115,8594201-8594242,8594326-8594367,8594446-8594545,8594630-8594697,8594810-8594891,8595678-8595862	AT1G24260.1 CDS K-box region and MADS-box transcription factor family protein [TAIR10] CDS gene_syn AGAMOUS-like 9, AGL9, F3I6.19, F3I6_19, SEP3, SEPALLATA3, TRANSCRIPTION FACTOR AGL9 gene SEP3 function Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. go_component nucleus|GO:0005634|14617066|IDA go_process cell fate specification|GO:0001708|10821278|IMP go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process flower development|GO:0009908|11439126|TAS go_process specification of floral organ identity|GO:0010093|10821278|IMP go_process specification of floral organ identity|GO:0010093|19385720|IMP go_process ovule development|GO:0048481|14555696|IMP go_process specification of floral organ number|GO:0048833|19385720|IMP go_function DNA binding|GO:0003677|19033361|IDA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11439126|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function protein binding|GO:0005515|14555696|IPI go_function protein binding|GO:0005515|16854969|IPI product K-box region and MADS-box transcription factor family protein note SEPALLATA3 (SEP3); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1); Has 7422 Blast hits to 7421 proteins in 918 species: Archae - 0; Bacteria - 2; Metazoa - 630; Fungi - 302; Plants - 6411; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). protein_id AT1G24260.1p transcript_id AT1G24260.1 protein_id AT1G24260.1p transcript_id AT1G24260.1
At1g24260	chr1:008593790	0.0	C/8593790-8593880,8593973-8594115,8594326-8594367,8594446-8594545,8594630-8594697,8594807-8594891,8595678-8595862	AT1G24260.3 CDS K-box region and MADS-box transcription factor family protein [TAIR10] CDS gene_syn AGAMOUS-like 9, AGL9, F3I6.19, F3I6_19, SEP3, SEPALLATA3, TRANSCRIPTION FACTOR AGL9 gene SEP3 function Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. go_process cell fate specification|GO:0001708|10821278|IMP go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process flower development|GO:0009908|11439126|TAS go_process specification of floral organ identity|GO:0010093|10821278|IMP go_process specification of floral organ identity|GO:0010093|19385720|IMP go_process ovule development|GO:0048481|14555696|IMP go_process specification of floral organ number|GO:0048833|19385720|IMP go_function DNA binding|GO:0003677|19033361|IDA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11439126|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function protein binding|GO:0005515|14555696|IPI go_function protein binding|GO:0005515|16854969|IPI product K-box region and MADS-box transcription factor family protein note SEPALLATA3 (SEP3); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G02310.1). protein_id AT1G24260.3p transcript_id AT1G24260.3 protein_id AT1G24260.3p transcript_id AT1G24260.3
At1g24265	chr1:008600613	0.0	W/8600613-8600655,8600788-8600892,8601005-8601078,8601177-8601254,8601382-8601457,8601783-8601847,8602049-8602150,8602347-8602436,8602540-8602614,8602719-8602751,8602828-8602902,8602994-8603056,8603181-8603249,8603330-8603374,8603472-8603630	AT1G24265.3 CDS bZIP transcription factor, putative (DUF1664) [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1664) note Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G24267.1). protein_id AT1G24265.3p transcript_id AT1G24265.3 protein_id AT1G24265.3p transcript_id AT1G24265.3
At1g24265	chr1:008600613	0.0	W/8600613-8600655,8601005-8601078,8601177-8601254,8601382-8601457,8601783-8601847,8602049-8602150,8602347-8602436,8602540-8602614,8602719-8602751,8602828-8602902,8602994-8603056,8603181-8603249,8603330-8603374,8603472-8603630	AT1G24265.1 CDS bZIP transcription factor, putative (DUF1664) [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1664) note Protein of unknown function (DUF1664); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G24267.1); Has 187 Blast hits to 185 proteins in 27 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 2; Plants - 147; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G24265.1p transcript_id AT1G24265.1 protein_id AT1G24265.1p transcript_id AT1G24265.1
At1g24265	chr1:008600613	0.0	W/8600613-8600655,8601005-8601078,8601177-8601254,8601382-8601457,8601783-8601847,8602049-8602150,8602347-8602436,8602540-8602614,8602719-8602751,8602828-8602902,8602994-8603056,8603181-8603249,8603330-8603374,8603472-8603630	AT1G24265.2 CDS bZIP transcription factor, putative (DUF1664) [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1664) note Protein of unknown function (DUF1664); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G24267.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G24265.2p transcript_id AT1G24265.2 protein_id AT1G24265.2p transcript_id AT1G24265.2
At1g24267	chr1:008604451	0.0	C/8604451-8604594,8604691-8604735,8604815-8604883,8604998-8605060,8605154-8605228,8605313-8605335,8605428-8605515,8605617-8605706,8605848-8605949,8606170-8606234,8606311-8606386,8606508-8606585,8606669-8606742,8607199-8607241	AT1G24267.2 CDS bZIP transcription factor, putative (DUF1664) [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1664) note Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G24265.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G24267.2p transcript_id AT1G24267.2 protein_id AT1G24267.2p transcript_id AT1G24267.2
At1g24267	chr1:008604451	0.0	C/8604451-8604594,8604691-8604735,8604815-8604883,8604998-8605060,8605154-8605228,8605313-8605345,8605441-8605515,8605617-8605706,8605848-8605949,8606170-8606234,8606311-8606386,8606508-8606585,8606669-8606742,8607199-8607241	AT1G24267.1 CDS bZIP transcription factor, putative (DUF1664) [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1664) note Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G24265.2); Has 154 Blast hits to 152 proteins in 21 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 1; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24267.1p transcript_id AT1G24267.1 protein_id AT1G24267.1p transcript_id AT1G24267.1
At1g24270	chr1:008608123	0.0	C/8608123-8608743	AT1G24270.1 CDS hypothetical protein [TAIR10] CDS gene_syn F3I6.21, F3I6_21 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13090.1); Has 84 Blast hits to 83 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24270.1p transcript_id AT1G24270.1 protein_id AT1G24270.1p transcript_id AT1G24270.1
At1g24280	chr1:008609495	0.0	W/8609495-8609708,8609907-8610124,8610209-8610303,8610415-8610529,8610801-8611006,8611092-8611241,8611329-8611449,8611523-8611752,8611827-8612027,8612134-8612383	AT1G24280.1 CDS glucose-6-phosphate dehydrogenase 3 [TAIR10] CDS gene_syn F3I6.22, F3I6_22, G6PD3, glucose-6-phosphate dehydrogenase 3 gene G6PD3 function Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. go_component chloroplast|GO:0009507|15634201|ISS go_process glucose metabolic process|GO:0006006|15634201|IDA go_process glucose metabolic process|GO:0006006||ISS go_process pentose-phosphate shunt, oxidative branch|GO:0009051|15634201|IDA go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS go_function protein binding|GO:0005515|19452453|IPI product glucose-6-phosphate dehydrogenase 3 note glucose-6-phosphate dehydrogenase 3 (G6PD3); CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), Glucose-6-phosphate dehydrogenase, active site (InterPro:IPR019796), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1); Has 8421 Blast hits to 8407 proteins in 2362 species: Archae - 0; Bacteria - 5801; Metazoa - 904; Fungi - 180; Plants - 375; Viruses - 4; Other Eukaryotes - 1157 (source: NCBI BLink). protein_id AT1G24280.1p transcript_id AT1G24280.1 protein_id AT1G24280.1p transcript_id AT1G24280.1
At1g24290	chr1:008612650	0.0	C/8612650-8614227	AT1G24290.1 CDS AAA-type ATPase family protein [TAIR10] CDS gene_syn F3I6.23, F3I6_23 go_function nucleotide binding|GO:0000166||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_function ATP binding|GO:0005524||ISS product AAA-type ATPase family protein note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), ATPase, AAA-type, core (InterPro:IPR003959), MgsA AAA+ ATPase C-terminal (InterPro:IPR021886), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: replication factor C subunit 3 (TAIR:AT1G77470.1); Has 22422 Blast hits to 22383 proteins in 2992 species: Archae - 614; Bacteria - 15728; Metazoa - 553; Fungi - 700; Plants - 273; Viruses - 62; Other Eukaryotes - 4492 (source: NCBI BLink). protein_id AT1G24290.1p transcript_id AT1G24290.1 protein_id AT1G24290.1p transcript_id AT1G24290.1
At1g24300	chr1:008614515	0.0	C/8614515-8614771,8614860-8615005,8615116-8615161,8615284-8617437,8617617-8618327,8618465-8618563,8618662-8618752,8618879-8619709,8619865-8619935,8620354-8620420	AT1G24300.2 CDS GYF domain-containing protein [TAIR10] CDS gene_syn F3I6.24, F3I6_24 product GYF domain-containing protein note GYF domain-containing protein; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G27430.1). protein_id AT1G24300.2p transcript_id AT1G24300.2 protein_id AT1G24300.2p transcript_id AT1G24300.2
At1g24300	chr1:008614515	0.0	C/8614515-8614771,8614860-8615005,8615116-8615161,8615284-8617452,8617617-8618327,8618465-8618563,8618662-8618752,8618879-8619709,8619865-8619935,8620354-8620420	AT1G24300.1 CDS GYF domain-containing protein [TAIR10] CDS gene_syn F3I6.24, F3I6_24 go_component chloroplast|GO:0009507|15028209|IDA product GYF domain-containing protein note GYF domain-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G27430.1); Has 5832 Blast hits to 4523 proteins in 447 species: Archae - 0; Bacteria - 473; Metazoa - 1947; Fungi - 549; Plants - 478; Viruses - 23; Other Eukaryotes - 2362 (source: NCBI BLink). protein_id AT1G24300.1p transcript_id AT1G24300.1 protein_id AT1G24300.1p transcript_id AT1G24300.1
AT1G24300	chr1:008615178	0.0	C/8615178-8615188,8615284-8617437,8617617-8618327,8618465-8618563,8618662-8618752,8618879-8619709,8619865-8619935,8620354-8620420	AT1G24300.3 AT1G24300.3 CDS GYF domain-containing protein
At1g24310	chr1:008624192	0.0	W/8624192-8624581,8624664-8624717,8624804-8624863,8624998-8625108,8625284-8625349,8625435-8625521,8625623-8625724,8625802-8625951,8626066-8626179	AT1G24310.1 CDS nuclear pore complex protein [TAIR10] CDS gene_syn F3I6.25, F3I6_25 go_component nucleolus|GO:0005730|15496452|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). protein_id AT1G24310.1p transcript_id AT1G24310.1 protein_id AT1G24310.1p transcript_id AT1G24310.1
AT1G24320	chr1:008626437	0.0	C/8626437-8626581,8626659-8626832,8626911-8627002,8627121-8627270,8627376-8627432,8627512-8627565,8627644-8627793,8627939-8628006,8628163-8628288,8628380-8628453,8628546-8628653,8628737-8628858,8628933-8629040,8629135-8629217,8629424-8629520,8629641-8629709,8629822-8629908,8629993-8630045,8630139-8630413,8630672-8630745,8630825-8630935	AT1G24320.2 AT1G24320.2 CDS Six-hairpin glycosidases superfamily protein
At1g24320	chr1:008626437	0.0	C/8626437-8626581,8626659-8626832,8626911-8627002,8627121-8627270,8627376-8627432,8627512-8627565,8627644-8627793,8627939-8628006,8628163-8628288,8628380-8628453,8628546-8628653,8628737-8628858,8628933-8629040,8629135-8629217,8629424-8629520,8629641-8629709,8629822-8629908,8629993-8630413,8630672-8630745,8630825-8630935	AT1G24320.1 CDS Six-hairpin glycosidases superfamily protein [TAIR10] CDS gene_syn F3I6.26, F3I6_26 go_process oligosaccharide metabolic process|GO:0009311||IEA go_function catalytic activity|GO:0003824||IEA go_function mannosyl-oligosaccharide glucosidase activity|GO:0004573||IEA go_component cellular_component|GO:0005575||ND go_function alpha-glucosidase activity|GO:0004558||ISS product Six-hairpin glycosidases superfamily protein note Six-hairpin glycosidases superfamily protein; FUNCTIONS IN: mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity; INVOLVED IN: oligosaccharide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: glucosidase 1 (TAIR:AT1G67490.1); Has 471 Blast hits to 459 proteins in 200 species: Archae - 2; Bacteria - 99; Metazoa - 113; Fungi - 132; Plants - 45; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). protein_id AT1G24320.1p transcript_id AT1G24320.1 protein_id AT1G24320.1p transcript_id AT1G24320.1
At1g24330	chr1:008631779	0.0	W/8631779-8631829,8632187-8632372,8632463-8632570,8632722-8633884,8634028-8634835	AT1G24330.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn F3I6.27, F3I6_27 go_component chloroplast|GO:0009507|18431481|IDA go_process protein ubiquitination|GO:0016567||IEA go_function ubiquitin-protein ligase activity|GO:0004842||IEA go_function binding|GO:0005488||IEA product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 3064 Blast hits to 2955 proteins in 242 species: Archae - 0; Bacteria - 60; Metazoa - 394; Fungi - 149; Plants - 2167; Viruses - 3; Other Eukaryotes - 291 (source: NCBI BLink). protein_id AT1G24330.1p transcript_id AT1G24330.1 protein_id AT1G24330.1p transcript_id AT1G24330.1
AT1G24330	chr1:008631779	0.0	W/8631779-8631829,8632187-8632372,8632463-8632570,8632722-8633884,8634028-8634835	AT1G24330.2 AT1G24330.2 CDS ARM repeat superfamily protein
At1g24340	chr1:008635416	0.0	W/8635416-8635620,8635735-8635817,8635906-8636041,8636154-8636647,8636757-8636804,8636949-8637123,8637476-8637588,8637675-8637771,8637856-8638075,8638308-8638866	AT1G24340.1 CDS FAD/NAD(P)-binding oxidoreductase family protein [TAIR10] CDS gene_syn EMB2421, EMB260, EMBRYO DEFECTIVE 2421, EMBRYO DEFECTIVE 260, F3I6.28, F3I6_28 gene EMB2421 function A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. go_function monooxygenase activity|GO:0004497||IEA go_process embryo development ending in seed dormancy|GO:0009793||NAS go_function monooxygenase activity|GO:0004497||ISS product FAD/NAD(P)-binding oxidoreductase family protein note EMBRYO DEFECTIVE 2421 (EMB2421); FUNCTIONS IN: monooxygenase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Monooxygenase, FAD-binding (InterPro:IPR002938); Has 5711 Blast hits to 5585 proteins in 1112 species: Archae - 4; Bacteria - 3878; Metazoa - 19; Fungi - 944; Plants - 66; Viruses - 0; Other Eukaryotes - 800 (source: NCBI BLink). protein_id AT1G24340.1p transcript_id AT1G24340.1 protein_id AT1G24340.1p transcript_id AT1G24340.1
At1g24350	chr1:008639098	0.0	C/8639098-8639172,8639369-8639422,8639506-8639598,8639737-8639787,8639874-8640030,8640183-8640313	AT1G24350.3 CDS Acid phosphatase/vanadium-dependent haloperoxidase-related protein [TAIR10] CDS gene_syn F3I6.29, F3I6_29 go_process biological_process|GO:0008150||ND product Acid phosphatase/vanadium-dependent haloperoxidase-related protein note Acid phosphatase/vanadium-dependent haloperoxidase-related protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: Acid phosphatase/vanadium-dependent haloperoxidase-related protein (TAIR:AT1G67600.1). protein_id AT1G24350.3p transcript_id AT1G24350.3 protein_id AT1G24350.3p transcript_id AT1G24350.3
At1g24350	chr1:008639098	0.0	C/8639098-8639172,8639506-8639598,8639737-8639787,8639874-8640030,8640183-8640313	AT1G24350.1 CDS Acid phosphatase/vanadium-dependent haloperoxidase-related protein [TAIR10] CDS gene_syn F3I6.29, F3I6_29 go_process biological_process|GO:0008150||ND product Acid phosphatase/vanadium-dependent haloperoxidase-related protein note Acid phosphatase/vanadium-dependent haloperoxidase-related protein; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: Acid phosphatase/vanadium-dependent haloperoxidase-related protein (TAIR:AT1G67600.1); Has 1124 Blast hits to 1124 proteins in 413 species: Archae - 0; Bacteria - 739; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink). protein_id AT1G24350.1p transcript_id AT1G24350.1 protein_id AT1G24350.1p transcript_id AT1G24350.1
AT1G24350	chr1:008639407	0.0	C/8639407-8639412,8639506-8639598,8639737-8639787,8639874-8640030,8640183-8640313	AT1G24350.5 AT1G24350.5 CDS Acid phosphatase/vanadium-dependent haloperoxidase-related protein
At1g24350	chr1:008639407	0.0	C/8639407-8639418,8639506-8639598,8639737-8639787,8639874-8640030,8640183-8640313	AT1G24350.2 CDS Acid phosphatase/vanadium-dependent haloperoxidase-related protein [TAIR10] CDS gene_syn F3I6.29, F3I6_29 go_process biological_process|GO:0008150||ND product Acid phosphatase/vanadium-dependent haloperoxidase-related protein note Acid phosphatase/vanadium-dependent haloperoxidase-related protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: Acid phosphatase/vanadium-dependent haloperoxidase-related protein (TAIR:AT1G67600.1); Has 1118 Blast hits to 1118 proteins in 412 species: Archae - 0; Bacteria - 737; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink). protein_id AT1G24350.2p transcript_id AT1G24350.2 protein_id AT1G24350.2p transcript_id AT1G24350.2
AT1G24350	chr1:008639485	0.0	C/8639485-8639598,8639737-8639787,8639874-8640030,8640183-8640313	AT1G24350.4 AT1G24350.4 CDS Acid phosphatase/vanadium-dependent haloperoxidase-related protein
At1g24360	chr1:008640820	0.0	W/8640820-8640982,8641069-8641211,8641451-8641504,8641945-8642025,8642106-8642151,8642220-8642314,8642390-8642422,8642626-8642760,8642857-8642950,8643077-8643159,8643251-8643283	AT1G24360.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F21J9.2 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process fatty acid biosynthetic process|GO:0006633||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function 3-oxoacyl-[acyl-carrier-protein] reductase activity|GO:0004316|1575676|ISS go_function copper ion binding|GO:0005507|20018591|IDA product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: 3-oxoacyl-[acyl-carrier-protein] reductase activity, copper ion binding; INVOLVED IN: oxidation reduction, metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxoacyl-(acyl-carrier-protein) reductase (InterPro:IPR011284), Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29370.1); Has 133396 Blast hits to 132816 proteins in 3924 species: Archae - 1008; Bacteria - 83642; Metazoa - 7884; Fungi - 7548; Plants - 3127; Viruses - 5; Other Eukaryotes - 30182 (source: NCBI BLink). protein_id AT1G24360.1p transcript_id AT1G24360.1 protein_id AT1G24360.1p transcript_id AT1G24360.1
At1g24370	chr1:008643761	0.0	C/8643761-8644090,8644162-8644277,8644831-8645626	AT1G24370.1 [TAIR10] mRNA
At1g24370	chr1:008643761	0.0	C/8643761-8645626	AT1G24370 [TAIR10] TE pseudo gene_syn F21J9.3 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1); similar to Os01g0180200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042205.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93896.1); similar to ribosomal protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD23759.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966)
At1g24380	chr1:008646625	0.0	W/8646625-8646777,8646881-8647609	AT1G24380.1 CDS no-apical-meristem-associated carboxy-terminal domain protein [TAIR10] CDS gene_syn F21J9.4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10230.1); Has 252 Blast hits to 250 proteins in 33 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 6; Plants - 180; Viruses - 2; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G24380.1p transcript_id AT1G24380.1 protein_id AT1G24380.1p transcript_id AT1G24380.1
At1g24388	chr1:008648099	0.0	C/8648099-8648311,8648402-8648530,8648623-8648694	AT1G24388.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G24388.1p transcript_id AT1G24388.1 protein_id AT1G24388.1p transcript_id AT1G24388.1
At1g24390	chr1:008648201	0.0	W/8648201-8648272,8648426-8648580,8648768-8648834	AT1G24390.1 CDS hypothetical protein [TAIR10] CDS gene_syn F21J9.5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24390.1p transcript_id AT1G24390.1 protein_id AT1G24390.1p transcript_id AT1G24390.1
At1g24400	chr1:008651563	0.0	C/8651563-8651661,8651771-8651839,8651931-8652022,8652120-8652225,8652311-8652704,8652912-8653295,8653380-8653561	AT1G24400.1 CDS lysine histidine transporter 2 [TAIR10] CDS gene_syn AATL2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, ATLHT2, F21J9.6, LHT2, lysine histidine transporter 2 gene LHT2 function High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers go_component membrane|GO:0016020||ISS go_process amino acid transport|GO:0006865||ISS go_function amino acid transmembrane transporter activity|GO:0015171||ISS go_function acidic amino acid transmembrane transporter activity|GO:0015172|15361141|IGI go_function neutral amino acid transmembrane transporter activity|GO:0015175|15361141|IGI product lysine histidine transporter 2 note lysine histidine transporter 2 (LHT2); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G67640.1); Has 4292 Blast hits to 4283 proteins in 340 species: Archae - 11; Bacteria - 170; Metazoa - 1210; Fungi - 747; Plants - 1636; Viruses - 0; Other Eukaryotes - 518 (source: NCBI BLink). protein_id AT1G24400.1p transcript_id AT1G24400.1 protein_id AT1G24400.1p transcript_id AT1G24400.1
At1g24405	chr1:008655253	0.0	W/8655253-8655438	AT1G24405.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G24405.1p transcript_id AT1G24405.1 protein_id AT1G24405.1p transcript_id AT1G24405.1
At1g24420	chr1:008656687	0.0	W/8656687-8657997	AT1G24420.1 CDS HXXXD-type acyl-transferase family protein [TAIR10] CDS gene_syn F21J9.8 go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function transferase activity|GO:0016740||ISS product HXXXD-type acyl-transferase family protein note HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G15390.1); Has 2364 Blast hits to 2360 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 164; Plants - 2198; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G24420.1p transcript_id AT1G24420.1 protein_id AT1G24420.1p transcript_id AT1G24420.1
AT1G24420	chr1:008656687	0.0	W/8656687-8657997	AT1G24420.2 AT1G24420.2 CDS HXXXD-type acyl-transferase family protein
At1g24430	chr1:008658190	0.0	C/8658190-8659497	AT1G24430.1 CDS HXXXD-type acyl-transferase family protein [TAIR10] CDS gene_syn F21J9.9 go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_component cellular_component|GO:0005575||ND go_function transferase activity|GO:0016740||ISS product HXXXD-type acyl-transferase family protein note HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G26040.1); Has 2376 Blast hits to 2366 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 27; Plants - 2343; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G24430.1p transcript_id AT1G24430.1 protein_id AT1G24430.1p transcript_id AT1G24430.1
At1g24440	chr1:008662340	0.0	W/8662340-8662419,8662897-8663053,8663179-8663245,8663326-8663777	AT1G24440.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F21J9.10 go_function zinc ion binding|GO:0008270||IEA product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G13195.1); Has 869 Blast hits to 869 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 71; Plants - 339; Viruses - 31; Other Eukaryotes - 140 (source: NCBI BLink). protein_id AT1G24440.1p transcript_id AT1G24440.1 protein_id AT1G24440.1p transcript_id AT1G24440.1
AT1G24440	chr1:008662913	0.0	W/8662913-8663053,8663179-8663245,8663326-8663777	AT1G24440.2 AT1G24440.2 CDS RING/U-box superfamily protein
At1g24450	chr1:008664201	0.0	W/8664201-8664278,8664376-8664464,8664669-8665077	AT1G24450.1 CDS Ribonuclease III family protein [TAIR10] CDS gene_syn F21J9.11, NFD2, NUCLEAR FUSION DEFECTIVE 2 gene NFD2 go_component vacuole|GO:0005773|15539469|IDA go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_function ribonuclease III activity|GO:0004525||IEA go_process RNA processing|GO:0006396||ISS go_function RNA binding|GO:0003723||ISS go_function ribonuclease III activity|GO:0004525||ISS product Ribonuclease III family protein note NUCLEAR FUSION DEFECTIVE 2 (NFD2); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); Has 2124 Blast hits to 2124 proteins in 820 species: Archae - 3; Bacteria - 1583; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 509 (source: NCBI BLink). protein_id AT1G24450.1p transcript_id AT1G24450.1 protein_id AT1G24450.1p transcript_id AT1G24450.1
At1g24460	chr1:008666072	0.0	W/8666072-8666173,8666264-8666395,8666499-8669753,8670080-8670729,8670834-8670910,8671007-8671656,8671820-8671967,8672064-8672145,8672236-8672338	AT1G24460.2 CDS TGN-related, localized SYP41 interacting protein [TAIR10] CDS gene_syn F21J9.12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1). protein_id AT1G24460.2p transcript_id AT1G24460.2 protein_id AT1G24460.2p transcript_id AT1G24460.2
At1g24460	chr1:008666072	0.0	W/8666072-8666173,8666264-8666395,8666499-8669759,8670047-8670819,8670834-8671656,8671820-8671967,8672064-8672145,8672236-8672338	AT1G24460.1 CDS TGN-related, localized SYP41 interacting protein [TAIR10] CDS gene_syn F21J9.12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa - 70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other Eukaryotes - 33775 (source: NCBI BLink). protein_id AT1G24460.1p transcript_id AT1G24460.1 protein_id AT1G24460.1p transcript_id AT1G24460.1
At1g24470	chr1:008674056	0.0	W/8674056-8674398,8674947-8675232,8675835-8675904,8676038-8676277	AT1G24470.1 CDS beta-ketoacyl reductase 2 [TAIR10] CDS gene_syn ATKCR2, F21J9.13, KCR2, beta-ketoacyl reductase 2 gene KCR2 function Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene. go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_component endoplasmic reticulum|GO:0005783|19439572|IDA go_function oxidoreductase activity|GO:0016491||ISS go_function ketoreductase activity|GO:0045703|11792704|IDA product beta-ketoacyl reductase 2 note beta-ketoacyl reductase 2 (KCR2); FUNCTIONS IN: oxidoreductase activity, ketoreductase activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: beta-ketoacyl reductase 1 (TAIR:AT1G67730.1); Has 80088 Blast hits to 80001 proteins in 3265 species: Archae - 726; Bacteria - 55481; Metazoa - 4714; Fungi - 3206; Plants - 2039; Viruses - 0; Other Eukaryotes - 13922 (source: NCBI BLink). protein_id AT1G24470.1p transcript_id AT1G24470.1 protein_id AT1G24470.1p transcript_id AT1G24470.1
AT1G24475	chr1:008676282	0.0	C/8676282-8676338	AT1G24475.1 AT1G24475.1 CDS hypothetical protein
At1g24480	chr1:008676440	0.0	C/8676440-8677159	AT1G24480.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F21J9.14 go_component endomembrane system|GO:0012505||IEA go_process metabolic process|GO:0008152||IEA go_function methyltransferase activity|GO:0008168||IEA product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G24805.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G24480.1p transcript_id AT1G24480.1 protein_id AT1G24480.1p transcript_id AT1G24480.1
At1g24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681004-8681063,8681326-8681475,8681600-8681670	AT1G24485.2 CDS ER protein carbohydrate-binding protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G24485.2p transcript_id AT1G24485.2 protein_id AT1G24485.2p transcript_id AT1G24485.2
At1g24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681004-8681063,8681326-8681479,8681600-8681894	AT1G24485.3 CDS ER protein carbohydrate-binding protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 1310 Blast hits to 1260 proteins in 183 species: Archae - 0; Bacteria - 258; Metazoa - 162; Fungi - 42; Plants - 688; Viruses - 16; Other Eukaryotes - 144 (source: NCBI BLink). protein_id AT1G24485.3p transcript_id AT1G24485.3 protein_id AT1G24485.3p transcript_id AT1G24485.3
AT1G24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681004-8681095	AT1G24485.4 AT1G24485.4 CDS ER protein carbohydrate-binding protein
At1g24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681326-8681475,8681600-8681670	AT1G24485.1 CDS ER protein carbohydrate-binding protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G24485.1p transcript_id AT1G24485.1 protein_id AT1G24485.1p transcript_id AT1G24485.1
At1g24490	chr1:008682364	0.0	W/8682364-8682690,8682773-8682883,8682966-8683040,8683284-8683344,8683430-8683503,8683593-8683697,8683887-8683994,8684170-8684273,8684353-8684583,8684663-8684966	AT1G24490.1 CDS OxaA/YidC-like membrane insertion protein [TAIR10] CDS gene_syn ALB4, ALBINA 4, ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ARTEMIS, F21J9.16 gene ALB4 function Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts. ALB4 is required for proper chloroplast biogenesis. go_component chloroplast thylakoid membrane|GO:0009535|16595657|IDA go_component membrane|GO:0016020||ISS go_process signal transduction|GO:0007165||ISS go_process chloroplast organization|GO:0009658|16595657|IMP go_function molecular_function|GO:0003674||ND product OxaA/YidC-like membrane insertion protein note ALBINA 4 (ALB4); CONTAINS InterPro DOMAIN/s: Membrane insertion protein, OxaA/YidC (InterPro:IPR001708), Membrane insertion protein, OxaA/YidC, core (InterPro:IPR020001); BEST Arabidopsis thaliana protein match is: 63 kDa inner membrane family protein (TAIR:AT2G28800.1); Has 8883 Blast hits to 8828 proteins in 2598 species: Archae - 0; Bacteria - 5941; Metazoa - 162; Fungi - 75; Plants - 144; Viruses - 0; Other Eukaryotes - 2561 (source: NCBI BLink). protein_id AT1G24490.1p transcript_id AT1G24490.1 protein_id AT1G24490.1p transcript_id AT1G24490.1
At1g24490	chr1:008682364	0.0	W/8682364-8682690,8682966-8683040,8683284-8683344,8683430-8683503,8683593-8683697,8683887-8683994,8684170-8684273,8684353-8684583,8684663-8684966	AT1G24490.2 CDS OxaA/YidC-like membrane insertion protein [TAIR10] CDS gene_syn ALB4, ALBINA 4, ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ARTEMIS, F21J9.16 gene ALB4 function Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts. ALB4 is required for proper chloroplast biogenesis. go_component chloroplast thylakoid membrane|GO:0009535|16595657|IDA go_component membrane|GO:0016020||ISS go_process signal transduction|GO:0007165||ISS go_process chloroplast organization|GO:0009658|16595657|IMP go_function molecular_function|GO:0003674||ND product OxaA/YidC-like membrane insertion protein note ALBINA 4 (ALB4); CONTAINS InterPro DOMAIN/s: Membrane insertion protein, OxaA/YidC (InterPro:IPR001708), Membrane insertion protein, OxaA/YidC, core (InterPro:IPR020001); BEST Arabidopsis thaliana protein match is: 63 kDa inner membrane family protein (TAIR:AT2G28800.1); Has 8058 Blast hits to 8029 proteins in 2465 species: Archae - 0; Bacteria - 5573; Metazoa - 87; Fungi - 22; Plants - 115; Viruses - 0; Other Eukaryotes - 2261 (source: NCBI BLink). protein_id AT1G24490.2p transcript_id AT1G24490.2 protein_id AT1G24490.2p transcript_id AT1G24490.2
At1g24510	chr1:008685504	0.0	C/8685504-8685674,8685757-8685870,8685974-8686140,8686314-8686416,8686509-8686561,8686643-8686775,8686919-8687267,8687371-8687660	AT1G24510.2 CDS TCP-1/cpn60 chaperonin family protein [TAIR10] CDS gene_syn F21J9.17 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein folding|GO:0006457||IEA go_process cellular protein metabolic process|GO:0044267||IEA go_function protein binding|GO:0005515|19452453|IPI product TCP-1/cpn60 chaperonin family protein note TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G24510.2p transcript_id AT1G24510.2 protein_id AT1G24510.2p transcript_id AT1G24510.2
AT1G24510	chr1:008685504	0.0	C/8685504-8685674,8685757-8685870,8685974-8686140,8686314-8686416,8686509-8686561,8686643-8686775,8686919-8687267,8687371-8687689,8687763-8687802	AT1G24510.3 AT1G24510.3 CDS TCP-1/cpn60 chaperonin family protein
At1g24510	chr1:008685504	0.0	C/8685504-8685674,8685757-8685870,8685974-8686140,8686314-8686416,8686509-8686561,8686643-8686775,8686919-8687267,8687371-8687689,8687903-8688101	AT1G24510.1 CDS TCP-1/cpn60 chaperonin family protein [TAIR10] CDS gene_syn F21J9.17 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein folding|GO:0006457||IEA go_process cellular protein metabolic process|GO:0044267||IEA go_function protein binding|GO:0005515|19452453|IPI product TCP-1/cpn60 chaperonin family protein note TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink). protein_id AT1G24510.1p transcript_id AT1G24510.1 protein_id AT1G24510.1p transcript_id AT1G24510.1
At1g24520	chr1:008688699	0.0	W/8688699-8689058	AT1G24520.1 CDS homolog of Brassica campestris pollen protein 1 [TAIR10] CDS gene_syn BCP1, F21J9.18, F21J9_18, homolog of Brassica campestris pollen protein 1 gene BCP1 function Male fertility gene acting on tapetum and microspore go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process pollen sperm cell differentiation|GO:0048235|7892232|IMP go_function molecular_function|GO:0003674||ND product homolog of Brassica campestris pollen protein 1 note homolog of Brassica campestris pollen protein 1 (BCP1); BEST Arabidopsis thaliana protein match is: Anther-specific protein agp1-like (TAIR:AT3G26110.1); Has 67 Blast hits to 55 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). protein_id AT1G24520.1p transcript_id AT1G24520.1 protein_id AT1G24520.1p transcript_id AT1G24520.1
At1g24530	chr1:008693287	0.0	W/8693287-8694543	AT1G24530.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn F21J9.19 go_component plasma membrane|GO:0005886|17317660|IDA go_component heterotrimeric G-protein complex|GO:0005834||ISS go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G24130.1); Has 47444 Blast hits to 22226 proteins in 799 species: Archae - 42; Bacteria - 6792; Metazoa - 17370; Fungi - 11016; Plants - 5872; Viruses - 0; Other Eukaryotes - 6352 (source: NCBI BLink). protein_id AT1G24530.1p transcript_id AT1G24530.1 protein_id AT1G24530.1p transcript_id AT1G24530.1
At1g24540	chr1:008699751	0.0	W/8699751-8701319	AT1G24540.1 CDS cytochrome P450, family 86, subfamily C, polypeptide 1 [TAIR10] CDS gene_syn cytochrome P450, family 86, subfamily C, polypeptide 1, CYP86C1, F21J9.20 gene CYP86C1 function member of CYP86C go_component endomembrane system|GO:0012505||IEA go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 86, subfamily C, polypeptide 1 note cytochrome P450, family 86, subfamily C, polypeptide 1 (CYP86C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: petal, embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily C, polypeptide 2 (TAIR:AT3G26125.1); Has 29011 Blast hits to 28908 proteins in 1488 species: Archae - 44; Bacteria - 2527; Metazoa - 10901; Fungi - 6353; Plants - 8121; Viruses - 3; Other Eukaryotes - 1062 (source: NCBI BLink). protein_id AT1G24540.1p transcript_id AT1G24540.1 protein_id AT1G24540.1p transcript_id AT1G24540.1
AT1G24545	chr1:008701112	0.0	C/8701112-8701312,8701578-8701648,8701973-8702113,8702156-8702177,8702364-8702477	AT1G24545.1 AT1G24545.1 CDS copine family protein
At1g24560	chr1:008702644	0.0	W/8702644-8704023,8704106-8704182,8704601-8704712,8704841-8704957,8705290-8705640	AT1G24560.1 CDS paramyosin [TAIR10] CDS gene_syn F21J9.22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink). protein_id AT1G24560.1p transcript_id AT1G24560.1 protein_id AT1G24560.1p transcript_id AT1G24560.1
AT1G24570	chr1:008707197	0.0	W/8707197-8707216,8707293-8707410,8707491-8707583,8707664-8707768,8707853-8707936,8708014-8708132,8708203-8708304,8708367-8708480,8708556-8708612,8708702-8708768,8708857-8708910,8709014-8709091,8709168-8709203,8709372-8709491	AT1G24570.2 AT1G24570.2 CDS transmembrane protein, putative (DUF707)
At1g24570	chr1:008707197	0.0	W/8707197-8707216,8707293-8707410,8707491-8707587,8707689-8707768,8707853-8707936,8708014-8708132,8708203-8708304,8708367-8708480,8708556-8708612,8708702-8708768,8708857-8708910,8709014-8709091,8709168-8709203,8709372-8709491	AT1G24570.1 CDS transmembrane protein, putative (DUF707) [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF707) note Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G67850.2); Has 331 Blast hits to 330 proteins in 30 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G24570.1p transcript_id AT1G24570.1 protein_id AT1G24570.1p transcript_id AT1G24570.1
At1g24580	chr1:008710178	0.0	W/8710178-8710573	AT1G24580.1 CDS RING/U-box superfamily protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G67856.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G24580.1p transcript_id AT1G24580.1 protein_id AT1G24580.1p transcript_id AT1G24580.1
At1g24575	chr1:008711211	0.0	C/8711211-8711477	AT1G24575.1 CDS DEAD-box ATP-dependent RNA helicase-like protein, putative [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24575.1p transcript_id AT1G24575.1 protein_id AT1G24575.1p transcript_id AT1G24575.1
At1g24577	chr1:008712758	0.0	C/8712758-8712985	AT1G24577.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24577.1p transcript_id AT1G24577.1 protein_id AT1G24577.1p transcript_id AT1G24577.1
At1g24590	chr1:008714389	0.0	C/8714389-8715309	AT1G24590.1 CDS DORNROSCHEN-like [TAIR10] CDS gene_syn DORNROSCHEN-LIKE, DORNROSCHEN-like, DRN-LIKE, DRNL, ENHANCER OF SHOOT REGENERATION 2, ESR2, F21J9.25, FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, SOB2 gene DRNL function Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. This gene functions in the regeneration of shoots in tissue culture, probably through transcriptional regulation of CUC1. May also be involved in activation of the cell cycle via CycD1;1. go_component chloroplast|GO:0009507||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to auxin stimulus|GO:0009733|17376809|IEP go_process embryonic pattern specification|GO:0009880|17376809|IMP go_process regulation of transcription|GO:0045449|17056621|IMP go_process cotyledon development|GO:0048825|17376809|IMP go_process regulation of cell cycle|GO:0051726|17056621|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product DORNROSCHEN-like note DORNROSCHEN-like (DRNL); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: embryo, leaf primordium, seed; EXPRESSED DURING: C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G12980.1); Has 5552 Blast hits to 5472 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5544; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G24590.1p transcript_id AT1G24590.1 protein_id AT1G24590.1p transcript_id AT1G24590.1
At1g24600	chr1:008720375	0.0	W/8720375-8720593	AT1G24600.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24600.1p transcript_id AT1G24600.1 protein_id AT1G24600.1p transcript_id AT1G24600.1
At1g24610	chr1:008720906	0.0	C/8720906-8721280,8721373-8721636,8721719-8722188,8722390-8722711	AT1G24610.1 CDS Rubisco methyltransferase family protein [TAIR10] CDS gene_syn F21J9.27 go_component chloroplast|GO:0009507|18431481|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Rubisco methyltransferase family protein note Rubisco methyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 14 (TAIR:AT4G20130.1); Has 1056 Blast hits to 1053 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 281; Plants - 368; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink). protein_id AT1G24610.1p transcript_id AT1G24610.1 protein_id AT1G24610.1p transcript_id AT1G24610.1
AT1G24610	chr1:008720906	0.0	C/8720906-8721280,8721373-8721636,8721719-8722188,8722390-8722711	AT1G24610.2 AT1G24610.2 CDS Rubisco methyltransferase family protein
At1g24620	chr1:008723893	0.0	C/8723893-8724453	AT1G24620.1 CDS EF hand calcium-binding protein family [TAIR10] CDS gene_syn F21J9.28 go_component nucleus|GO:0005634|14617066|IDA go_function calcium ion binding|GO:0005509||IEA go_component cytoplasm|GO:0005737|19686372|IDA go_process response to cold|GO:0009409|14617066|IEP go_function calcium ion binding|GO:0005509||ISS product EF hand calcium-binding protein family note EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G18210.2); Has 28159 Blast hits to 18576 proteins in 1591 species: Archae - 2; Bacteria - 225; Metazoa - 10723; Fungi - 6999; Plants - 5954; Viruses - 2; Other Eukaryotes - 4254 (source: NCBI BLink). protein_id AT1G24620.1p transcript_id AT1G24620.1 protein_id AT1G24620.1p transcript_id AT1G24620.1
At1g24625	chr1:008726009	0.0	C/8726009-8726638	AT1G24625.1 CDS zinc finger protein 7 [TAIR10] CDS gene_syn F21J9.29, ZFP7, zinc finger protein 7 gene ZFP7 function Encodes a zinc finger protein containing only a single zinc finger. go_component intracellular|GO:0005622||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product zinc finger protein 7 note zinc finger protein 7 (ZFP7); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 4 (TAIR:AT1G66140.1); Has 1014 Blast hits to 1014 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1011; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24625.1p transcript_id AT1G24625.1 protein_id AT1G24625.1p transcript_id AT1G24625.1
At1g24640	chr1:008729280	0.0	W/8729280-8732681	AT1G24640.1 [TAIR10] mRNA
At1g24640	chr1:008729280	0.0	W/8729280-8732681	AT1G24640 [TAIR10] TE pseudo gene_syn F5A9.24 note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.3e-37 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)
At1g24650	chr1:008734570	0.0	W/8734570-8736742,8736828-8737315	AT1G24650.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn F5A9.23 go_component endomembrane system|GO:0012505||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function protein kinase activity|GO:0004672||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G01820.1); Has 163262 Blast hits to 131858 proteins in 4814 species: Archae - 197; Bacteria - 15893; Metazoa - 48579; Fungi - 11073; Plants - 66376; Viruses - 415; Other Eukaryotes - 20729 (source: NCBI BLink). protein_id AT1G24650.1p transcript_id AT1G24650.1 protein_id AT1G24650.1p transcript_id AT1G24650.1
At1g24657	chr1:008737952	0.0	C/8737952-8738365	AT1G24657.1 [TAIR10] pseudogene
AT1G24660	chr1:008740207	0.0	W/8740207-8740239	AT1G24660.1 AT1G24660.1 CDS hypothetical protein
At1g24686	chr1:008740506	0.0	C/8740506-8740919	AT1G24686.1 [TAIR10] pseudogene
AT1G24706	chr1:008742210	0.0	W/8742210-8742344,8742441-8742566,8742677-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752251,8752375-8752455,8752526-8752918,8753379-8753586,8753667-8754475,8754716-8755026,8755177-8755243	AT1G24706.7 AT1G24706.7 CDS THO2
AT1G24706	chr1:008742210	0.0	W/8742210-8742344,8742441-8742566,8742677-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752251,8752375-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755026,8755177-8755243	AT1G24706.4 AT1G24706.4 CDS THO2
AT1G24706	chr1:008742210	0.0	W/8742210-8742344,8742441-8742566,8742677-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752251,8752375-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755026,8755177-8755243	AT1G24706.5 AT1G24706.5 CDS THO2
AT1G24706	chr1:008742210	0.0	W/8742210-8742344,8742441-8742566,8742677-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752251,8752375-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755026,8755177-8755243	AT1G24706.6 AT1G24706.6 CDS THO2
AT1G24706	chr1:008742210	0.0	W/8742210-8742344,8742441-8742566,8742677-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752251,8752375-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755036	AT1G24706.3 AT1G24706.3 CDS THO2
At1g24706	chr1:008742210	0.0	W/8742210-8742344,8742441-8742566,8742677-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752255,8752379-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755026,8755127-8755250	AT1G24706.2 CDS THO2 [TAIR10] CDS gene_syn AtTHO2, F5A9.21, F5A9_21, THO2 gene THO2 function Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product THO2 note THO2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THO complex, subunitTHOC2, C-region (InterPro:IPR021418), THO complex, subunitTHOC2, N-region (InterPro:IPR021726). protein_id AT1G24706.2p transcript_id AT1G24706.2 protein_id AT1G24706.2p transcript_id AT1G24706.2
At1g24706	chr1:008742210	0.0	W/8742210-8742344,8742441-8742566,8742677-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752255,8752379-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755026,8755177-8755243	AT1G24706.1 CDS THO2 [TAIR10] CDS gene_syn AtTHO2, F5A9.21, F5A9_21, THO2 gene THO2 function Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product THO2 note THO2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THO complex, subunitTHOC2, C-region (InterPro:IPR021418), THO complex, subunitTHOC2, N-region (InterPro:IPR021726); Has 19944 Blast hits to 14322 proteins in 730 species: Archae - 16; Bacteria - 829; Metazoa - 10835; Fungi - 2538; Plants - 1298; Viruses - 76; Other Eukaryotes - 4352 (source: NCBI BLink). protein_id AT1G24706.1p transcript_id AT1G24706.1 protein_id AT1G24706.1p transcript_id AT1G24706.1
AT1G24706	chr1:008742683	0.0	W/8742683-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752251,8752375-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755026,8755177-8755243	AT1G24706.8 AT1G24706.8 CDS THO2
AT1G24706	chr1:008744595	0.0	W/8744595-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752251,8752375-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755026,8755177-8755243	AT1G24706.9 AT1G24706.9 CDS THO2
At1g24733	chr1:008757069	0.0	W/8757069-8757362	AT1G24733.1 [TAIR10] pseudogene
At1g24735	chr1:008757977	0.0	W/8757977-8758048,8758277-8758362,8758437-8758531,8758664-8758866,8758941-8759069,8759158-8759448	AT1G24735.2 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F5A9.20, F5A9_20 go_function O-methyltransferase activity|GO:0008171||IEA go_component cytosol|GO:0005829|9484457|TAS product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, leaf apex, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: caffeoyl-CoA 3-O-methyltransferase (TAIR:AT1G67980.1). protein_id AT1G24735.2p transcript_id AT1G24735.2 protein_id AT1G24735.2p transcript_id AT1G24735.2
At1g24735	chr1:008757977	0.0	W/8757977-8758048,8758277-8758362,8758722-8758866,8758941-8759069,8759158-8759448	AT1G24735.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn F5A9.20, F5A9_20 go_function O-methyltransferase activity|GO:0008171||IEA go_component cytosol|GO:0005829|9484457|TAS product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, leaf apex, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: caffeoyl-CoA 3-O-methyltransferase (TAIR:AT1G67980.1); Has 876 Blast hits to 876 proteins in 343 species: Archae - 8; Bacteria - 665; Metazoa - 15; Fungi - 24; Plants - 105; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). protein_id AT1G24735.1p transcript_id AT1G24735.1 protein_id AT1G24735.1p transcript_id AT1G24735.1
AT1G24735	chr1:008758699	0.0	W/8758699-8758866,8758941-8759069,8759158-8759448	AT1G24735.3 AT1G24735.3 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
AT1G24764	chr1:008760001	0.0	C/8760001-8760043,8760161-8760348,8760459-8760998,8761087-8761158,8761273-8761419,8761508-8761663,8761748-8761918,8762017-8762145	AT1G24764.3 AT1G24764.3 CDS microtubule-associated proteins 70-2
At1g24764	chr1:008760001	0.0	C/8760001-8760043,8760161-8760348,8760459-8760998,8761087-8761158,8761273-8761419,8761508-8761663,8761748-8761918,8762017-8762187,8762275-8762340,8762832-8762917,8762992-8763256	AT1G24764.1 CDS microtubule-associated proteins 70-2 [TAIR10] CDS gene_syn ATMAP70-2, F5A9.19, F5A9_19, MAP70-2, microtubule-associated proteins 70-2 gene MAP70-2 function Member of the MAP70 protein family. go_component microtubule|GO:0005874|15860013|ISS go_process cytoskeleton organization|GO:0007010|15860013|TAS go_function microtubule binding|GO:0008017|15860013|ISS product microtubule-associated proteins 70-2 note microtubule-associated proteins 70-2 (MAP70-2); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-1 (TAIR:AT1G68060.1); Has 48419 Blast hits to 29383 proteins in 2175 species: Archae - 681; Bacteria - 6937; Metazoa - 23825; Fungi - 4071; Plants - 3202; Viruses - 118; Other Eukaryotes - 9585 (source: NCBI BLink). protein_id AT1G24764.1p transcript_id AT1G24764.1 protein_id AT1G24764.1p transcript_id AT1G24764.1
AT1G24764	chr1:008760001	0.0	C/8760001-8760043,8760161-8760348,8760459-8760998,8761087-8761158,8761273-8761419,8761508-8761663,8761748-8761918,8762017-8762187,8762275-8762340,8762832-8762917,8762992-8763433	AT1G24764.2 AT1G24764.2 CDS microtubule-associated proteins 70-2
At1g24792	chr1:008766060	0.0	W/8766060-8767096	AT1G24792.1 [TAIR10] pseudogene
At1g24793	chr1:008767581	0.0	W/8767581-8767682,8767784-8768092,8768280-8768486,8768576-8768677,8768772-8768808,8768903-8768922	AT1G24793.2 CDS UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [TAIR10] CDS gene_syn F5A9.18 go_process lipid A biosynthetic process|GO:0009245||IEA go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA product UDP-3-O-acyl N-acetylglycosamine deacetylase family protein note UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25210.2); Has 5025 Blast hits to 5025 proteins in 1409 species: Archae - 0; Bacteria - 2975; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 1994 (source: NCBI BLink). protein_id AT1G24793.2p transcript_id AT1G24793.2 protein_id AT1G24793.2p transcript_id AT1G24793.2
At1g24793	chr1:008767581	0.0	W/8767581-8767682,8767784-8768092,8768280-8768486,8768576-8768677,8768772-8768836,8768903-8769047,8769157-8769207	AT1G24793.1 CDS UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [TAIR10] CDS gene_syn F5A9.18 go_process lipid A biosynthetic process|GO:0009245||IEA go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA product UDP-3-O-acyl N-acetylglycosamine deacetylase family protein note UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G24793.1p transcript_id AT1G24793.1 protein_id AT1G24793.1p transcript_id AT1G24793.1
At1g24800	chr1:008769741	0.0	W/8769741-8771042	AT1G24800.1 CDS F-box family protein [TAIR10] CDS product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G24800.1p transcript_id AT1G24800.1 protein_id AT1G24800.1p transcript_id AT1G24800.1
At1g24807	chr1:008771766	0.0	C/8771766-8771870,8771958-8772093,8772189-8772288,8772404-8772514,8772593-8772630,8772719-8772828,8773428-8773535	AT1G24807.1 CDS Glutamine amidotransferase type 1 family protein [TAIR10] CDS gene_syn F5A9.17, F5A9_17 go_component chloroplast|GO:0009507|18431481|IDA go_process glutamine metabolic process|GO:0006541||IEA go_process metabolic process|GO:0008152||IEA go_process biosynthetic process|GO:0009058||IEA go_function catalytic activity|GO:0003824||IEA go_function anthranilate synthase activity|GO:0004049||IEA product Glutamine amidotransferase type 1 family protein note Glutamine amidotransferase type 1 family protein; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit 1 (TAIR:AT1G25220.2); Has 23448 Blast hits to 23448 proteins in 3320 species: Archae - 578; Bacteria - 15369; Metazoa - 560; Fungi - 661; Plants - 197; Viruses - 0; Other Eukaryotes - 6083 (source: NCBI BLink). protein_id AT1G24807.1p transcript_id AT1G24807.1 protein_id AT1G24807.1p transcript_id AT1G24807.1
At1g24822	chr1:008774997	0.0	C/8774997-8775080,8775130-8775293,8777039-8777371,8777813-8777882	AT1G24822.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5A9.16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25097.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24822.1p transcript_id AT1G24822.1 protein_id AT1G24822.1p transcript_id AT1G24822.1
At1g24880	chr1:008776028	0.0	W/8776028-8776056,8776144-8776178,8776286-8776339,8777014-8777260,8777828-8777831	AT1G24880.3 CDS UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [TAIR10] CDS gene_syn F5A9.14, F5A9_14 product UDP-3-O-acyl N-acetylglycosamine deacetylase family protein note UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1). protein_id AT1G24880.3p transcript_id AT1G24880.3 protein_id AT1G24880.3p transcript_id AT1G24880.3
At1g24880	chr1:008776028	0.0	W/8776028-8776056,8776144-8776178,8776286-8776339,8777014-8777273	AT1G24880.2 CDS UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [TAIR10] CDS gene_syn F5A9.14, F5A9_14 product UDP-3-O-acyl N-acetylglycosamine deacetylase family protein note UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1). protein_id AT1G24880.2p transcript_id AT1G24880.2 protein_id AT1G24880.2p transcript_id AT1G24880.2
At1g24851	chr1:008778280	0.0	W/8778280-8779056	AT1G24851.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5A9.15, F5A9_15 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 6812 Blast hits to 2172 proteins in 306 species: Archae - 0; Bacteria - 350; Metazoa - 1330; Fungi - 775; Plants - 255; Viruses - 55; Other Eukaryotes - 4047 (source: NCBI BLink). protein_id AT1G24851.1p transcript_id AT1G24851.1 protein_id AT1G24851.1p transcript_id AT1G24851.1
At1g24879	chr1:008780844	0.0	W/8780844-8781536	AT1G24879.1 [TAIR10] pseudogene
AT1G24860	chr1:008781961	0.0	W/8781961-8782062,8782164-8782472,8782660-8782865,8782955-8783056,8783151-8783215,8783282-8783426,8783536-8783583	AT1G24860.1 AT1G24860.1 CDS Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2
At1g24881	chr1:008784120	0.0	W/8784120-8785421	AT1G24881.1 CDS F-box family protein [TAIR10] CDS product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G24881.1p transcript_id AT1G24881.1 protein_id AT1G24881.1p transcript_id AT1G24881.1
At1g24909	chr1:008786145	0.0	C/8786145-8786249,8786337-8786472,8786568-8786667,8786783-8786893,8786972-8787009,8787098-8787168,8787807-8787914	AT1G24909.1 CDS Glutamine amidotransferase type 1 family protein [TAIR10] CDS gene_syn F5A9.13 go_process glutamine metabolic process|GO:0006541||IEA go_process metabolic process|GO:0008152||IEA go_process biosynthetic process|GO:0009058||IEA go_function catalytic activity|GO:0003824||IEA go_function anthranilate synthase activity|GO:0004049||IEA product Glutamine amidotransferase type 1 family protein note Glutamine amidotransferase type 1 family protein; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: Glutamine amidotransferase type 1 family protein (TAIR:AT1G25083.1); Has 23967 Blast hits to 23967 proteins in 3339 species: Archae - 582; Bacteria - 15663; Metazoa - 561; Fungi - 667; Plants - 197; Viruses - 0; Other Eukaryotes - 6297 (source: NCBI BLink). protein_id AT1G24909.1p transcript_id AT1G24909.1 protein_id AT1G24909.1p transcript_id AT1G24909.1
At1g24938	chr1:008789376	0.0	C/8789376-8789459,8789509-8789672,8790489-8790574,8790893-8790994,8791288-8791329,8791408-8791551,8791657-8791934,8792027-8792080	AT1G24938.1 [TAIR10] mRNA
At1g24938	chr1:008789376	0.0	C/8789376-8792080	AT1G24938 [TAIR10] TE pseudo note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)
At1g24967	chr1:008793821	0.0	C/8793821-8797942	AT1G24967.1 [TAIR10] mRNA
At1g24967	chr1:008793821	0.0	C/8793821-8797942	AT1G24967 [TAIR10] TE pseudo gene_syn F5A9.11, F5A9_11 note Transposable element gene, Mutator-like transposase family, has a 1.2e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)
At1g24996	chr1:008799520	0.0	C/8799520-8799899,8800341-8800410	AT1G24996.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5A9.10, F5A9_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G24996.1p transcript_id AT1G24996.1 protein_id AT1G24996.1p transcript_id AT1G24996.1
At1g25025	chr1:008800808	0.0	W/8800808-8801584	AT1G25025.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5A9.9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25112.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink). protein_id AT1G25025.1p transcript_id AT1G25025.1 protein_id AT1G25025.1p transcript_id AT1G25025.1
At1g25053	chr1:008803300	0.0	W/8803300-8804091	AT1G25053.1 [TAIR10] pseudogene
At1g25054	chr1:008804489	0.0	W/8804489-8804590,8804692-8805000,8805188-8805394,8805484-8805585,8805680-8805744,8805811-8805955,8806065-8806115	AT1G25054.1 CDS UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [TAIR10] CDS gene_syn F5A9.8, F5A9_8 go_process lipid A biosynthetic process|GO:0009245||IEA go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA go_process lipid A biosynthetic process|GO:0009245||ISS go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS product UDP-3-O-acyl N-acetylglycosamine deacetylase family protein note UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5320 Blast hits to 5320 proteins in 1417 species: Archae - 0; Bacteria - 2992; Metazoa - 1; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink). protein_id AT1G25054.1p transcript_id AT1G25054.1 protein_id AT1G25054.1p transcript_id AT1G25054.1
At1g25055	chr1:008806649	0.0	W/8806649-8807950	AT1G25055.1 CDS F-box family protein [TAIR10] CDS product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G25055.1p transcript_id AT1G25055.1 protein_id AT1G25055.1p transcript_id AT1G25055.1
At1g25083	chr1:008808674	0.0	C/8808674-8808778,8808866-8809001,8809097-8809196,8809312-8809422,8809501-8809538,8809627-8809697,8810336-8810443	AT1G25083.1 CDS Glutamine amidotransferase type 1 family protein [TAIR10] CDS gene_syn F5A9.7 go_process glutamine metabolic process|GO:0006541||IEA go_process metabolic process|GO:0008152||IEA go_process biosynthetic process|GO:0009058||IEA go_function catalytic activity|GO:0003824||IEA go_function anthranilate synthase activity|GO:0004049||IEA product Glutamine amidotransferase type 1 family protein note Glutamine amidotransferase type 1 family protein; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: Glutamine amidotransferase type 1 family protein (TAIR:AT1G24909.1); Has 23967 Blast hits to 23967 proteins in 3339 species: Archae - 582; Bacteria - 15663; Metazoa - 561; Fungi - 667; Plants - 197; Viruses - 0; Other Eukaryotes - 6297 (source: NCBI BLink). protein_id AT1G25083.1p transcript_id AT1G25083.1 protein_id AT1G25083.1p transcript_id AT1G25083.1
At1g25097	chr1:008811905	0.0	C/8811905-8811988,8812038-8812201,8813945-8814277,8814719-8814788	AT1G25097.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5A9.6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G25097.1p transcript_id AT1G25097.1 protein_id AT1G25097.1p transcript_id AT1G25097.1
At1g25098	chr1:008812811	0.0	W/8812811-8813084,8813192-8814450	AT1G25098.2 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G25097 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G25098.2
At1g25098	chr1:008812822	0.0	W/8812822-8813084,8813192-8813245,8813920-8814342	AT1G25098.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G25097 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G25098.1
At1g25112	chr1:008815186	0.0	W/8815186-8815962	AT1G25112.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5A9.5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink). protein_id AT1G25112.1p transcript_id AT1G25112.1 protein_id AT1G25112.1p transcript_id AT1G25112.1
AT1G25112	chr1:008815186	0.0	W/8815186-8815962	AT1G25112.2 AT1G25112.2 CDS hypothetical protein
AT1G25112	chr1:008815186	0.0	W/8815186-8815962	AT1G25112.3 AT1G25112.3 CDS hypothetical protein
AT1G25112	chr1:008815186	0.0	W/8815186-8815962	AT1G25112.4 AT1G25112.4 CDS hypothetical protein
At1g25141	chr1:008817678	0.0	W/8817678-8818382	AT1G25141.1 CDS F-box associated ubiquitination effector family protein [TAIR10] CDS gene_syn F5A9.4 product F-box associated ubiquitination effector family protein note F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G47300.1); Has 7236 Blast hits to 6390 proteins in 1409 species: Archae - 0; Bacteria - 2915; Metazoa - 1; Fungi - 0; Plants - 2305; Viruses - 0; Other Eukaryotes - 2015 (source: NCBI BLink). protein_id AT1G25141.1p transcript_id AT1G25141.1 protein_id AT1G25141.1p transcript_id AT1G25141.1
At1g25145	chr1:008818867	0.0	W/8818867-8818968,8819070-8819378,8819566-8819772,8819862-8819963,8820058-8820122,8820189-8820333,8820443-8820493	AT1G25145.1 CDS UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [TAIR10] CDS go_process lipid A biosynthetic process|GO:0009245||IEA go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA product UDP-3-O-acyl N-acetylglycosamine deacetylase family protein note UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1). protein_id AT1G25145.1p transcript_id AT1G25145.1 protein_id AT1G25145.1p transcript_id AT1G25145.1
At1g25150	chr1:008821027	0.0	W/8821027-8822328	AT1G25150.1 CDS F-box family protein [TAIR10] CDS product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25055.1). protein_id AT1G25150.1p transcript_id AT1G25150.1 protein_id AT1G25150.1p transcript_id AT1G25150.1
AT1G25150	chr1:008821027	0.0	W/8821027-8822328	AT1G25150.2 AT1G25150.2 CDS F-box family protein
At1g25155	chr1:008823052	0.0	C/8823052-8823156,8823244-8823379,8823475-8823574,8823690-8823800,8823879-8823916,8824005-8824075,8824714-8824821	AT1G25155.1 CDS Glutamine amidotransferase type 1 family protein [TAIR10] CDS gene_syn F5A9.3 go_process glutamine metabolic process|GO:0006541||IEA go_process metabolic process|GO:0008152||IEA go_process biosynthetic process|GO:0009058||IEA go_function catalytic activity|GO:0003824||IEA go_function anthranilate synthase activity|GO:0004049||IEA product Glutamine amidotransferase type 1 family protein note Glutamine amidotransferase type 1 family protein; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: Glutamine amidotransferase type 1 family protein (TAIR:AT1G24909.1); Has 23967 Blast hits to 23967 proteins in 3339 species: Archae - 582; Bacteria - 15663; Metazoa - 561; Fungi - 667; Plants - 197; Viruses - 0; Other Eukaryotes - 6297 (source: NCBI BLink). protein_id AT1G25155.1p transcript_id AT1G25155.1 protein_id AT1G25155.1p transcript_id AT1G25155.1
At1g25175	chr1:008827286	0.0	W/8827286-8827462,8827570-8827623,8828298-8828544,8829112-8829320	AT1G25175.1 [TAIR10] ncRNA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G25175.1
At1g25180	chr1:008829564	0.0	W/8829564-8830340	AT1G25180.1 CDS hypothetical protein [TAIR10] CDS gene_syn F5A9.1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink). protein_id AT1G25180.1p transcript_id AT1G25180.1 protein_id AT1G25180.1p transcript_id AT1G25180.1
AT1G25180	chr1:008829564	0.0	W/8829564-8830340	AT1G25180.2 AT1G25180.2 CDS hypothetical protein
AT1G25180	chr1:008829564	0.0	W/8829564-8830340	AT1G25180.3 AT1G25180.3 CDS hypothetical protein
AT1G25180	chr1:008829564	0.0	W/8829564-8830340	AT1G25180.4 AT1G25180.4 CDS hypothetical protein
AT1G25180	chr1:008829564	0.0	W/8829564-8830340	AT1G25180.5 AT1G25180.5 CDS hypothetical protein
AT1G25180	chr1:008829564	0.0	W/8829564-8830340	AT1G25180.6 AT1G25180.6 CDS hypothetical protein
AT1G25180	chr1:008829564	0.0	W/8829564-8830340	AT1G25180.7 AT1G25180.7 CDS hypothetical protein
At1g25209	chr1:008831724	0.0	W/8831724-8832760	AT1G25209.1 [TAIR10] pseudogene
At1g25210	chr1:008833245	0.0	W/8833245-8833346,8833448-8833756,8833944-8834150,8834240-8834341,8834436-8834472,8834567-8834586	AT1G25210.1 CDS UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [TAIR10] CDS go_process lipid A biosynthetic process|GO:0009245||IEA go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA go_process lipid A biosynthetic process|GO:0009245||ISS go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS product UDP-3-O-acyl N-acetylglycosamine deacetylase family protein note UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G25210.1p transcript_id AT1G25210.1 protein_id AT1G25210.1p transcript_id AT1G25210.1
At1g25210	chr1:008833245	0.0	W/8833245-8833346,8833448-8833756,8833944-8834150,8834240-8834341,8834436-8834500,8834567-8834711,8834821-8834871	AT1G25210.2 CDS UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [TAIR10] CDS go_process lipid A biosynthetic process|GO:0009245||IEA go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA go_process lipid A biosynthetic process|GO:0009245||ISS go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS product UDP-3-O-acyl N-acetylglycosamine deacetylase family protein note UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24793.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G25210.2p transcript_id AT1G25210.2 protein_id AT1G25210.2p transcript_id AT1G25210.2
At1g25211	chr1:008835405	0.0	W/8835405-8836706	AT1G25211.1 CDS F-box family protein [TAIR10] CDS product F-box family protein note F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G25211.1p transcript_id AT1G25211.1 protein_id AT1G25211.1p transcript_id AT1G25211.1
At1g25220	chr1:008837430	0.0	C/8837430-8837534,8837622-8837757,8837847-8837946,8838062-8838172,8838269-8838306,8838395-8838465,8839116-8839279,8839373-8839478	AT1G25220.1 CDS anthranilate synthase beta subunit 1 [TAIR10] CDS gene_syn ANTHRANILATE SYNTHASE BETA SUBUNIT, ASB1, F4F7.39, F4F7_39, TRP4, TRYPTOPHAN BIOSYNTHESIS 4, WEAK ETHYLENE INSENSITIVE7, WEI7, anthranilate synthase beta subunit 1 gene ASB1 function Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2). go_component chloroplast|GO:0009507||IEA go_process response to salt stress|GO:0009651|17916636|IEP go_process tryptophan biosynthetic process|GO:0000162|8400875|TAS go_process response to bacterium|GO:0009617|8400875|IEP go_process response to ethylene stimulus|GO:0009723|15980261|IGI go_process auxin biosynthetic process|GO:0009851|15980261|IGI go_process lateral root primordium development|GO:0010386|18435826|IMP go_function anthranilate synthase activity|GO:0004049|8400875|IGI product anthranilate synthase beta subunit 1 note anthranilate synthase beta subunit 1 (ASB1); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: pericycle, cotyledon vascular system, primary root tip, root, lateral root primordium; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: Glutamine amidotransferase type 1 family protein (TAIR:AT5G57890.1); Has 24239 Blast hits to 24239 proteins in 3351 species: Archae - 587; Bacteria - 15803; Metazoa - 583; Fungi - 677; Plants - 202; Viruses - 0; Other Eukaryotes - 6387 (source: NCBI BLink). protein_id AT1G25220.1p transcript_id AT1G25220.1 protein_id AT1G25220.1p transcript_id AT1G25220.1
At1g25220	chr1:008837430	0.0	C/8837430-8837534,8837622-8837757,8837847-8837946,8838062-8838172,8838269-8838306,8838395-8838504,8839116-8839279,8839373-8839478	AT1G25220.2 CDS anthranilate synthase beta subunit 1 [TAIR10] CDS gene_syn ANTHRANILATE SYNTHASE BETA SUBUNIT, ASB1, F4F7.39, F4F7_39, TRP4, TRYPTOPHAN BIOSYNTHESIS 4, WEAK ETHYLENE INSENSITIVE7, WEI7, anthranilate synthase beta subunit 1 gene ASB1 function Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2). go_component chloroplast|GO:0009507||IEA go_process tryptophan biosynthetic process|GO:0000162|8400875|TAS go_process response to bacterium|GO:0009617|8400875|IEP go_process response to ethylene stimulus|GO:0009723|15980261|IGI go_process auxin biosynthetic process|GO:0009851|15980261|IGI go_process lateral root primordium development|GO:0010386|18435826|IMP go_function anthranilate synthase activity|GO:0004049|8400875|IGI product anthranilate synthase beta subunit 1 note anthranilate synthase beta subunit 1 (ASB1); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, response to ethylene stimulus, response to bacterium, auxin biosynthetic process, lateral root primordium development; LOCATED IN: chloroplast; EXPRESSED IN: pericycle, cotyledon vascular system, primary root tip, lateral root primordium; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: Glutamine amidotransferase type 1 family protein (TAIR:AT5G57890.1). protein_id AT1G25220.2p transcript_id AT1G25220.2 protein_id AT1G25220.2p transcript_id AT1G25220.2
At1g25230	chr1:008840474	0.0	C/8840474-8840699,8840809-8840876,8841188-8841316,8841410-8841537,8841666-8841773,8841870-8842026,8842095-8842298	AT1G25230.1 CDS Calcineurin-like metallo-phosphoesterase superfamily protein [TAIR10] CDS gene_syn F4F7.38, F4F7_38 go_component endomembrane system|GO:0012505||IEA go_function hydrolase activity|GO:0016787||IEA go_process biological_process|GO:0008150||ND go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Calcineurin-like metallo-phosphoesterase superfamily protein note Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 3 (TAIR:AT1G14700.1); Has 1153 Blast hits to 1147 proteins in 286 species: Archae - 1; Bacteria - 297; Metazoa - 336; Fungi - 8; Plants - 186; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink). protein_id AT1G25230.1p transcript_id AT1G25230.1 protein_id AT1G25230.1p transcript_id AT1G25230.1
AT1G25230	chr1:008840474	0.0	C/8840474-8840699,8840809-8840876,8841188-8841316,8841410-8841537,8841666-8841773,8841870-8842026,8842095-8842367	AT1G25230.3 AT1G25230.3 CDS Calcineurin-like metallo-phosphoesterase superfamily protein
AT1G25230	chr1:008840474	0.0	C/8840474-8840699,8840809-8840876,8841188-8841316,8841410-8841537,8841666-8841773,8841870-8842026	AT1G25230.2 AT1G25230.2 CDS Calcineurin-like metallo-phosphoesterase superfamily protein
AT1G25240	chr1:008845228	0.0	W/8845228-8846361	AT1G25240.2 AT1G25240.2 CDS ENTH/VHS/GAT family protein
At1g25240	chr1:008845231	0.0	W/8845231-8846361	AT1G25240.1 CDS ENTH/VHS/GAT family protein [TAIR10] CDS gene_syn F4F7.37, F4F7_37 go_component mitochondrion|GO:0005739||IEA go_component clathrin coat|GO:0030118||IEA go_process clathrin coat assembly|GO:0048268||IEA go_function phospholipid binding|GO:0005543||IEA go_function phosphatidylinositol binding|GO:0005545||IEA go_function clathrin binding|GO:0030276||IEA go_function binding|GO:0005488||ISS product ENTH/VHS/GAT family protein note ENTH/VHS/GAT family protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat, mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT1G68110.1); Has 471 Blast hits to 436 proteins in 54 species: Archae - 1; Bacteria - 2; Metazoa - 90; Fungi - 7; Plants - 370; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G25240.1p transcript_id AT1G25240.1 protein_id AT1G25240.1p transcript_id AT1G25240.1
AT1G25250	chr1:008849473	0.0	W/8849473-8849599,8849845-8850250,8850896-8851520	AT1G25250.3 AT1G25250.3 CDS indeterminate(ID)-domain 16
At1g25250	chr1:008849549	0.0	W/8849549-8849599,8849838-8850250,8850896-8851520	AT1G25250.1 CDS indeterminate(ID)-domain 16 [TAIR10] CDS gene_syn AtIDD16, F4F7.36, F4F7_36, IDD16, indeterminate(ID)-domain 16 gene IDD16 go_component intracellular|GO:0005622||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product indeterminate(ID)-domain 16 note indeterminate(ID)-domain 16 (IDD16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 32987 Blast hits to 15964 proteins in 303 species: Archae - 1; Bacteria - 31; Metazoa - 31048; Fungi - 164; Plants - 739; Viruses - 10; Other Eukaryotes - 994 (source: NCBI BLink). protein_id AT1G25250.1p transcript_id AT1G25250.1 protein_id AT1G25250.1p transcript_id AT1G25250.1
AT1G25250	chr1:008849952	0.0	W/8849952-8850250,8850896-8851520	AT1G25250.2 AT1G25250.2 CDS indeterminate(ID)-domain 16
At1g25260	chr1:008854163	0.0	C/8854163-8854297,8854379-8854455,8854556-8854646,8854804-8854864,8855000-8855058,8855152-8855242,8855321-8855486,8855739-8855766	AT1G25260.1 CDS Ribosomal protein L10 family protein [TAIR10] CDS gene_syn F4F7.35, F4F7_35 go_process ribosome biogenesis|GO:0042254||IEA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L10 family protein note Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G11250.1); Has 1099 Blast hits to 1097 proteins in 339 species: Archae - 116; Bacteria - 0; Metazoa - 360; Fungi - 259; Plants - 172; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink). protein_id AT1G25260.1p transcript_id AT1G25260.1 protein_id AT1G25260.1p transcript_id AT1G25260.1
At1g25270	chr1:008857726	0.0	W/8857726-8857889,8858083-8858145,8858378-8858494,8858938-8859184,8859278-8859436,8859505-8859656,8859744-8859909	AT1G25270.1 CDS nodulin MtN21 /EamA-like transporter family protein [TAIR10] CDS gene_syn F4F7.34, F4F7_34 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G68170.1); Has 2335 Blast hits to 2323 proteins in 458 species: Archae - 9; Bacteria - 937; Metazoa - 4; Fungi - 9; Plants - 1230; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink). protein_id AT1G25270.1p transcript_id AT1G25270.1 protein_id AT1G25270.1p transcript_id AT1G25270.1
At1g25275	chr1:008860719	0.0	W/8860719-8860860,8860949-8860999,8861125-8861156	AT1G25275.1 CDS thionin-like protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process response to karrikin|GO:0080167|20351290|IEP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G25275.1p transcript_id AT1G25275.1 protein_id AT1G25275.1p transcript_id AT1G25275.1
At1g25275	chr1:008860719	0.0	W/8860719-8860860,8860949-8861032,8861125-8861156	AT1G25275.3 CDS thionin-like protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process response to karrikin|GO:0080167|20351290|IEP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G25275.3p transcript_id AT1G25275.3 protein_id AT1G25275.3p transcript_id AT1G25275.3
At1g25275	chr1:008860719	0.0	W/8860719-8860864,8860953-8860999,8861125-8861156	AT1G25275.2 CDS thionin-like protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process response to karrikin|GO:0080167|20351290|IEP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G25275.2p transcript_id AT1G25275.2 protein_id AT1G25275.2p transcript_id AT1G25275.2
AT1G25277	chr1:008861851	0.0	W/8861851-8862051	AT1G25277.1 AT1G25277.1 CDS hypothetical protein
AT1G25277	chr1:008861851	0.0	W/8861851-8862051	AT1G25277.2 AT1G25277.2 CDS hypothetical protein
At1g25280	chr1:008864961	0.0	W/8864961-8865326,8865425-8865512,8865596-8865728,8865858-8866608	AT1G25280.1 CDS tubby like protein 10 [TAIR10] CDS gene_syn AtTLP10, F4F7.33, F4F7_33, TLP10, tubby like protein 10 gene TLP10 function Member of TLP family go_component plasma membrane|GO:0005886|17317660|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function phosphoric diester hydrolase activity|GO:0008081||ISS product tubby like protein 10 note tubby like protein 10 (TLP10); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 961 Blast hits to 946 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 21; Plants - 475; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). protein_id AT1G25280.1p transcript_id AT1G25280.1 protein_id AT1G25280.1p transcript_id AT1G25280.1
At1g25280	chr1:008865676	0.0	W/8865676-8865728,8865858-8866608	AT1G25280.2 CDS tubby like protein 10 [TAIR10] CDS gene_syn AtTLP10, F4F7.33, F4F7_33, TLP10, tubby like protein 10 gene TLP10 function Member of TLP family go_component plasma membrane|GO:0005886|17317660|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function phosphoric diester hydrolase activity|GO:0008081||ISS product tubby like protein 10 note tubby like protein 10 (TLP10); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 5 (TAIR:AT1G43640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G25280.2p transcript_id AT1G25280.2 protein_id AT1G25280.2p transcript_id AT1G25280.2
At1g25280	chr1:008865676	0.0	W/8865676-8865728,8865858-8866608	AT1G25280.3 CDS tubby like protein 10 [TAIR10] CDS gene_syn AtTLP10, F4F7.33, F4F7_33, TLP10, tubby like protein 10 gene TLP10 function Member of TLP family go_component plasma membrane|GO:0005886|17317660|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function phosphoric diester hydrolase activity|GO:0008081||ISS product tubby like protein 10 note tubby like protein 10 (TLP10); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 5 (TAIR:AT1G43640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G25280.3p transcript_id AT1G25280.3 protein_id AT1G25280.3p transcript_id AT1G25280.3
At1g25290	chr1:008867157	0.0	W/8867157-8867309,8867436-8867698,8867851-8867905,8867977-8868057,8868139-8868235,8868309-8868397,8868494-8868592,8868661-8868702,8868793-8868945	AT1G25290.1 CDS RHOMBOID-like protein 10 [TAIR10] CDS gene_syn ATRBL10, F4F7.32, F4F7_32, RBL10, RHOMBOID-like protein 10 gene RBL10 go_component integral to membrane|GO:0016021||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_process biological_process|GO:0008150||ND product RHOMBOID-like protein 10 note RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1); Has 5007 Blast hits to 5007 proteins in 1743 species: Archae - 94; Bacteria - 3513; Metazoa - 216; Fungi - 161; Plants - 305; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink). protein_id AT1G25290.1p transcript_id AT1G25290.1 protein_id AT1G25290.1p transcript_id AT1G25290.1
At1g25290	chr1:008867157	0.0	W/8867157-8867309,8867436-8867698,8867851-8867905,8867977-8868057,8868139-8868235,8868330-8868397,8868494-8868592,8868661-8868702,8868793-8868945	AT1G25290.2 CDS RHOMBOID-like protein 10 [TAIR10] CDS gene_syn ATRBL10, F4F7.32, F4F7_32, RBL10, RHOMBOID-like protein 10 gene RBL10 go_component integral to membrane|GO:0016021||IEA go_function serine-type endopeptidase activity|GO:0004252||IEA go_process biological_process|GO:0008150||ND product RHOMBOID-like protein 10 note RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1). protein_id AT1G25290.2p transcript_id AT1G25290.2 protein_id AT1G25290.2p transcript_id AT1G25290.2
At1g25300	chr1:008871568	0.0	W/8871568-8872386	AT1G25300.1 CDS Octicosapeptide/Phox/Bem1p family protein [TAIR10] CDS gene_syn F4F7.31, F4F7_31 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Octicosapeptide/Phox/Bem1p family protein note Octicosapeptide/Phox/Bem1p family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT2G01190.1); Has 352 Blast hits to 352 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 352; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G25300.1p transcript_id AT1G25300.1 protein_id AT1G25300.1p transcript_id AT1G25300.1
At1g25310	chr1:008874124	0.0	C/8874124-8874207,8874305-8874364,8874454-8874519,8874607-8874834	AT1G25310.1 CDS basic helix-loop-helix (bHLH) DNA-binding family protein [TAIR10] CDS gene_syn F4F7.30, F4F7_30, MEE8, maternal effect embryo arrest 8 gene MEE8 go_process embryo development ending in seed dormancy|GO:0009793|15634699|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product basic helix-loop-helix (bHLH) DNA-binding family protein note maternal effect embryo arrest 8 (MEE8); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); Has 109 Blast hits to 109 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G25310.1p transcript_id AT1G25310.1 protein_id AT1G25310.1p transcript_id AT1G25310.1
At1g25320	chr1:008877988	0.0	W/8877988-8879461,8879546-8880180	AT1G25320.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn F4F7.29, F4F7_29 go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G01210.1); Has 141432 Blast hits to 94435 proteins in 2977 species: Archae - 110; Bacteria - 10539; Metazoa - 37556; Fungi - 5883; Plants - 72805; Viruses - 219; Other Eukaryotes - 14320 (source: NCBI BLink). protein_id AT1G25320.1p transcript_id AT1G25320.1 protein_id AT1G25320.1p transcript_id AT1G25320.1
At1g25330	chr1:008880515	0.0	C/8880515-8880610,8880697-8880777,8880885-8880953,8881423-8881488,8881575-8881744,8881829-8882018	AT1G25330.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn F4F7.28, F4F7_28 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BR enhanced expression 1 (TAIR:AT1G18400.1); Has 2000 Blast hits to 1994 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 45; Plants - 1913; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G25330.1p transcript_id AT1G25330.1 protein_id AT1G25330.1p transcript_id AT1G25330.1
At1g25340	chr1:008885210	0.0	W/8885210-8885360,8885491-8885620,8885701-8886271	AT1G25340.1 CDS myb domain protein 116 [TAIR10] CDS gene_syn AtMYB116, F4F7.27, F4F7_27, MYB116, myb domain protein 116 gene MYB116 function putative transcription factor (MYB116) go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product myb domain protein 116 note myb domain protein 116 (MYB116); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 62 (TAIR:AT1G68320.1); Has 8701 Blast hits to 8019 proteins in 468 species: Archae - 0; Bacteria - 0; Metazoa - 786; Fungi - 397; Plants - 5757; Viruses - 6; Other Eukaryotes - 1755 (source: NCBI BLink). protein_id AT1G25340.1p transcript_id AT1G25340.1 protein_id AT1G25340.1p transcript_id AT1G25340.1
AT1G25340	chr1:008885210	0.0	W/8885210-8885360,8885506-8885620,8885701-8886252,8886521-8886629	AT1G25340.3 AT1G25340.3 CDS myb domain protein 116
At1g25340	chr1:008885210	0.0	W/8885210-8885360,8885506-8885620,8885701-8886271	AT1G25340.2 CDS myb domain protein 116 [TAIR10] CDS gene_syn AtMYB116, F4F7.27, F4F7_27, MYB116, myb domain protein 116 gene MYB116 function putative transcription factor (MYB116) go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product myb domain protein 116 note myb domain protein 116 (MYB116); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 62 (TAIR:AT1G68320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G25340.2p transcript_id AT1G25340.2 protein_id AT1G25340.2p transcript_id AT1G25340.2
At1g25350	chr1:008889280	0.0	C/8889280-8889374,8889466-8889598,8889684-8889773,8889850-8889955,8890047-8890147,8890223-8890418,8890510-8890646,8890741-8890872,8891052-8891150,8891240-8891437,8891589-8891675,8891761-8891851,8891967-8892022,8892124-8892276,8892534-8892626,8892709-8892816,8892906-8892967,8893108-8893203,8893375-8893474,8893581-8893652,8893743-8893793,8894074-8894205	AT1G25350.1 CDS glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative [TAIR10] CDS gene_syn F4F7.26, F4F7_26, OVA9, ovule abortion 9 gene OVA9 go_component cytosol|GO:0005829|16297076|ISS go_process translation|GO:0006412|9746349|TAS go_process glutamyl-tRNA aminoacylation|GO:0006424|16297076|ISS go_process ovule development|GO:0048481|16297076|IMP go_function glutamine-tRNA ligase activity|GO:0004819|16297076|ISS product glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative note ovule abortion 9 (OVA9); FUNCTIONS IN: glutamine-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, ovule development; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G19720.1); Has 13124 Blast hits to 13109 proteins in 2954 species: Archae - 262; Bacteria - 8524; Metazoa - 443; Fungi - 410; Plants - 177; Viruses - 0; Other Eukaryotes - 3308 (source: NCBI BLink). protein_id AT1G25350.1p transcript_id AT1G25350.1 protein_id AT1G25350.1p transcript_id AT1G25350.1
At1g25350	chr1:008889280	0.0	C/8889280-8889374,8889466-8889598,8889684-8889773,8889850-8889955,8890047-8890147,8890223-8890418,8890510-8890646,8890741-8890872,8891052-8891150,8891240-8891437,8891589-8891675,8891761-8891851,8891967-8892063,8892150-8892276,8892534-8892626,8892709-8892816,8892906-8892967,8893108-8893203,8893375-8893474,8893581-8893652,8893743-8893793,8894074-8894205	AT1G25350.2 CDS glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative [TAIR10] CDS gene_syn F4F7.26, F4F7_26, OVA9, ovule abortion 9 gene OVA9 go_component cytosol|GO:0005829|16297076|ISS go_process translation|GO:0006412|9746349|TAS go_process glutamyl-tRNA aminoacylation|GO:0006424|16297076|ISS go_process ovule development|GO:0048481|16297076|IMP go_function glutamine-tRNA ligase activity|GO:0004819|16297076|ISS product glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative note ovule abortion 9 (OVA9); CONTAINS InterPro DOMAIN/s: Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G19720.1). protein_id AT1G25350.2p transcript_id AT1G25350.2 protein_id AT1G25350.2p transcript_id AT1G25350.2
At1g25360	chr1:008894428	0.0	W/8894428-8896800	AT1G25360.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F4F7.25, F4F7_25 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 48992 Blast hits to 14461 proteins in 282 species: Archae - 2; Bacteria - 7; Metazoa - 148; Fungi - 100; Plants - 48130; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink). protein_id AT1G25360.1p transcript_id AT1G25360.1 protein_id AT1G25360.1p transcript_id AT1G25360.1
At1g25370	chr1:008898046	0.0	C/8898046-8898108,8898206-8898934	AT1G25370.1 CDS hypothetical protein (DUF1639) [TAIR10] CDS gene_syn F4F7.1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1639) note Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G68340.1); Has 265 Blast hits to 265 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G25370.1p transcript_id AT1G25370.1 protein_id AT1G25370.1p transcript_id AT1G25370.1
AT1G25370	chr1:008898046	0.0	C/8898046-8898108,8898206-8898934	AT1G25370.2 AT1G25370.2 CDS hypothetical protein (DUF1639)
At1g25375	chr1:008900279	0.0	C/8900279-8900467,8900611-8900785,8900947-8901056,8901243-8901288,8901390-8901463,8901562-8901647,8901719-8901790,8901919-8901994,8902138-8902320,8902447-8902601,8902740-8902887,8902960-8903220	AT1G25375.1 CDS Metallo-hydrolase/oxidoreductase superfamily protein [TAIR10] CDS go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND go_process metabolic process|GO:0008152||ISS go_function catalytic activity|GO:0003824||ISS product Metallo-hydrolase/oxidoreductase superfamily protein note Metallo-hydrolase/oxidoreductase superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); Has 5673 Blast hits to 5670 proteins in 1426 species: Archae - 148; Bacteria - 3668; Metazoa - 137; Fungi - 138; Plants - 124; Viruses - 0; Other Eukaryotes - 1458 (source: NCBI BLink). protein_id AT1G25375.1p transcript_id AT1G25375.1 protein_id AT1G25375.1p transcript_id AT1G25375.1
At1g25380	chr1:008903726	0.0	W/8903726-8903807,8903899-8903994,8904199-8904305,8904495-8904543,8904672-8904775,8904873-8904967,8905085-8905173,8905262-8905356,8905444-8905818	AT1G25380.1 CDS NAD+ transporter 2 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, ATNDT2, F4F7.45, NAD+ transporter 2, NDT2 gene NDT2 function Encodes a mitochondrial-localized NAD+ transporter that transports NAD+ in a counter exchange mode with ADP and AMP in vitro. go_component mitochondrial inner membrane|GO:0005743||IEA go_component membrane|GO:0016020||IEA go_component mitochondrial inner membrane|GO:0005743||ISS go_process transport|GO:0006810||ISS go_process mitochondrial transport|GO:0006839||ISS go_process NAD transport|GO:0043132|19745225|IDA go_function binding|GO:0005488||ISS go_function NAD transporter activity|GO:0051724|19745225|IDA product NAD+ transporter 2 note NAD+ transporter 2 (NDT2); FUNCTIONS IN: binding, NAD transporter activity; INVOLVED IN: transport, NAD transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: NAD+ transporter 1 (TAIR:AT2G47490.1); Has 30606 Blast hits to 14728 proteins in 470 species: Archae - 0; Bacteria - 8; Metazoa - 12581; Fungi - 9084; Plants - 5612; Viruses - 5; Other Eukaryotes - 3316 (source: NCBI BLink). protein_id AT1G25380.1p transcript_id AT1G25380.1 protein_id AT1G25380.1p transcript_id AT1G25380.1
AT1G25380	chr1:008903726	0.0	W/8903726-8903807,8903899-8903994,8904199-8904305,8904495-8904543,8904672-8904775,8904873-8904967,8905085-8905173,8905262-8905356,8905444-8905818	AT1G25380.2 AT1G25380.2 CDS NAD+ transporter 2
At1g25390	chr1:008906640	0.0	C/8906640-8907607,8907690-8907929,8908022-8908060,8908158-8908800	AT1G25390.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F2J7.14, F2J7_14 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G18390.2); Has 125531 Blast hits to 123961 proteins in 4878 species: Archae - 118; Bacteria - 14377; Metazoa - 46593; Fungi - 10981; Plants - 34187; Viruses - 597; Other Eukaryotes - 18678 (source: NCBI BLink). protein_id AT1G25390.1p transcript_id AT1G25390.1 protein_id AT1G25390.1p transcript_id AT1G25390.1
AT1G25390	chr1:008906640	0.0	C/8906640-8907607,8907690-8907929,8908022-8908060,8908158-8908800	AT1G25390.2 AT1G25390.2 CDS Protein kinase superfamily protein
At1g25400	chr1:008911463	0.0	C/8911463-8912329	AT1G25400.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F2J7.13, F2J7_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68440.1); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G25400.1p transcript_id AT1G25400.1 protein_id AT1G25400.1p transcript_id AT1G25400.1
At1g25400	chr1:008911463	0.0	C/8911463-8912329	AT1G25400.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F2J7.13, F2J7_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68440.1). protein_id AT1G25400.2p transcript_id AT1G25400.2 protein_id AT1G25400.2p transcript_id AT1G25400.2
At1g25410	chr1:008914191	0.0	C/8914191-8915219	AT1G25410.1 CDS isopentenyltransferase 6 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, ATIPT6, F2J7.12, F2J7_12, IPT6, isopentenyltransferase 6 gene IPT6 function AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI go_function AMP dimethylallyltransferase activity|GO:0009824||ISS product isopentenyltransferase 6 note isopentenyltransferase 6 (IPT6); CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 1 (TAIR:AT1G68460.1); Has 7248 Blast hits to 7187 proteins in 2504 species: Archae - 0; Bacteria - 4974; Metazoa - 135; Fungi - 135; Plants - 290; Viruses - 0; Other Eukaryotes - 1714 (source: NCBI BLink). protein_id AT1G25410.1p transcript_id AT1G25410.1 protein_id AT1G25410.1p transcript_id AT1G25410.1
At1g25420	chr1:008916141	0.0	W/8916141-8916190,8916361-8916493,8916571-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.1 CDS Regulator of Vps4 activity in the MVB pathway protein [TAIR10] CDS gene_syn F2J7.16, F2J7_16 go_process biological_process|GO:0008150||ND product Regulator of Vps4 activity in the MVB pathway protein note Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G34220.2); Has 638 Blast hits to 625 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 157; Plants - 289; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). protein_id AT1G25420.1p transcript_id AT1G25420.1 protein_id AT1G25420.1p transcript_id AT1G25420.1
AT1G25420	chr1:008916392	0.0	W/8916392-8916493,8916571-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.4 AT1G25420.4 CDS Regulator of Vps4 activity in the MVB pathway protein
At1g25420	chr1:008916592	0.0	W/8916592-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.2 CDS Regulator of Vps4 activity in the MVB pathway protein [TAIR10] CDS gene_syn F2J7.16, F2J7_16 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND product Regulator of Vps4 activity in the MVB pathway protein note Regulator of Vps4 activity in the MVB pathway protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G34220.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G25420.2p transcript_id AT1G25420.2 protein_id AT1G25420.2p transcript_id AT1G25420.2
At1g25420	chr1:008916592	0.0	W/8916592-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.3 CDS Regulator of Vps4 activity in the MVB pathway protein [TAIR10] CDS gene_syn F2J7.16, F2J7_16 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND product Regulator of Vps4 activity in the MVB pathway protein note Regulator of Vps4 activity in the MVB pathway protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G34220.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G25420.3p transcript_id AT1G25420.3 protein_id AT1G25420.3p transcript_id AT1G25420.3
At1g25422	chr1:008919087	0.0	W/8919087-8919410	AT1G25422.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68500.1); Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G25422.1p transcript_id AT1G25422.1 protein_id AT1G25422.1p transcript_id AT1G25422.1
At1g25425	chr1:008922832	0.0	W/8922832-8923122	AT1G25425.1 CDS CLAVATA3/ESR-RELATED 43 [TAIR10] CDS gene_syn CLAVATA3/ESR-RELATED 43, CLE43 gene CLE43 go_component endomembrane system|GO:0012505||IEA product CLAVATA3/ESR-RELATED 43 note CLAVATA3/ESR-RELATED 43 (CLE43); LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G25425.1p transcript_id AT1G25425.1 protein_id AT1G25425.1p transcript_id AT1G25425.1
At1g25430	chr1:008927732	0.0	C/8927732-8933058	AT1G25430.1 [TAIR10] mRNA
At1g25430	chr1:008927732	0.0	C/8927732-8933058	AT1G25430 [TAIR10] TE pseudo gene_syn F2J7.11, F2J7_11 note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.0e-45 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
At1g25440	chr1:008933939	0.0	C/8933939-8934193,8934286-8935284	AT1G25440.1 CDS B-box type zinc finger protein with CCT domain [TAIR10] CDS gene_syn F2J7.10, F2J7_10 go_component membrane|GO:0016020|17432890|IDA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product B-box type zinc finger protein with CCT domain note B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G68520.1); Has 3476 Blast hits to 2333 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3380; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G25440.1p transcript_id AT1G25440.1 protein_id AT1G25440.1p transcript_id AT1G25440.1
At1g25450	chr1:008938679	0.0	C/8938679-8939127,8939253-8940282	AT1G25450.1 CDS 3-ketoacyl-CoA synthase 5 [TAIR10] CDS gene_syn 3-ketoacyl-CoA synthase 5, CER60, ECERIFERUM 60, F2J7.9, F2J7_9, KCS5 gene KCS5 function Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). go_component membrane|GO:0016020|17432890|IDA go_component endoplasmic reticulum|GO:0005783|18465198|IDA go_process very long-chain fatty acid metabolic process|GO:0000038|10330468|IDA go_process response to osmotic stress|GO:0006970|18465198|IEP go_process response to cold|GO:0009409|18465198|IEP go_process response to light stimulus|GO:0009416|18465198|IEP go_process cuticle development|GO:0042335|10330468|IDA go_process pollen tube development|GO:0048868|19237690|IMP go_function fatty acid elongase activity|GO:0009922|15277688|IDA product 3-ketoacyl-CoA synthase 5 note 3-ketoacyl-CoA synthase 5 (KCS5); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 6 (TAIR:AT1G68530.1); Has 4033 Blast hits to 4019 proteins in 981 species: Archae - 0; Bacteria - 1511; Metazoa - 0; Fungi - 25; Plants - 2349; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink). protein_id AT1G25450.1p transcript_id AT1G25450.1 protein_id AT1G25450.1p transcript_id AT1G25450.1
At1g25460	chr1:008942811	0.0	W/8942811-8942916,8943022-8943191,8943287-8943475,8943571-8943733,8943832-8944021,8944103-8944244	AT1G25460.1 CDS NAD(P)-binding Rossmann-fold superfamily protein [TAIR10] CDS gene_syn F2J7.17, F2J7_17 go_process metabolic process|GO:0008152||IEA go_process flavonoid biosynthetic process|GO:0009813||IEA go_process cellular metabolic process|GO:0044237||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function coenzyme binding|GO:0050662||IEA go_component cellular_component|GO:0005575||ND go_function oxidoreductase activity|GO:0016491||ISS product NAD(P)-binding Rossmann-fold superfamily protein note NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, root, leaf; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G68540.1); Has 11038 Blast hits to 11020 proteins in 1988 species: Archae - 277; Bacteria - 4442; Metazoa - 226; Fungi - 896; Plants - 2479; Viruses - 33; Other Eukaryotes - 2685 (source: NCBI BLink). protein_id AT1G25460.1p transcript_id AT1G25460.1 protein_id AT1G25460.1p transcript_id AT1G25460.1
At1g25470	chr1:008944901	0.0	C/8944901-8945764	AT1G25470.1 CDS AP2 domain-containing transcription factor family protein [TAIR10] CDS gene_syn F2J7.8, F2J7_8 function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product AP2 domain-containing transcription factor family protein note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G68550.2); Has 2801 Blast hits to 2801 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2796; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G25470.1p transcript_id AT1G25470.1 protein_id AT1G25470.1p transcript_id AT1G25470.1
At1g25470	chr1:008944901	0.0	C/8944901-8945764	AT1G25470.2 CDS AP2 domain-containing transcription factor family protein [TAIR10] CDS gene_syn F2J7.8, F2J7_8 function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product AP2 domain-containing transcription factor family protein note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G68550.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G25470.2p transcript_id AT1G25470.2 protein_id AT1G25470.2p transcript_id AT1G25470.2
At1g25472	chr1:008945873	0.0	C/8945873-8945945,8946044-8946243	AT1G25472.1 CDS conserved peptide upstream open reading frame 54 [TAIR10] CDS gene_syn CPuORF54, conserved peptide upstream open reading frame 54 gene CPuORF54 function Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF54 represents a conserved upstream opening reading frame relative to major ORF AT1G25470.1 go_component endomembrane system|GO:0012505||IEA product conserved peptide upstream open reading frame 54 note conserved peptide upstream open reading frame 54 (CPuORF54); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 53 (TAIR:AT1G68552.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G25472.1p transcript_id AT1G25472.1 protein_id AT1G25472.1p transcript_id AT1G25472.1
At1g25480	chr1:008948467	0.0	W/8948467-8948806,8948991-8949128,8949230-8949499,8949599-8949735,8949829-8949975,8950262-8950876	AT1G25480.1 CDS Aluminium activated malate transporter family protein [TAIR10] CDS gene_syn F2J7.18, F2J7_18 go_process response to aluminum ion|GO:0010044||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Aluminium activated malate transporter family protein note Aluminium activated malate transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to aluminum ion; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G68600.1); Has 866 Blast hits to 864 proteins in 262 species: Archae - 0; Bacteria - 474; Metazoa - 0; Fungi - 26; Plants - 341; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G25480.1p transcript_id AT1G25480.1 protein_id AT1G25480.1p transcript_id AT1G25480.1
At1g25490	chr1:008951700	0.0	W/8951700-8952092,8952187-8952433,8952630-8952742,8952876-8952955,8953177-8953318,8953402-8953482,8953665-8953769,8953855-8954037,8954119-8954211,8954382-8954521,8954621-8954687,8954777-8954899	AT1G25490.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn ATB BETA BETA, EER1, ENHANCED ETHYLENE RESPONSE 1, F2J7.19, F2J7_19, PHOSPHOPROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, RCN1, REGA, ROOTS CURL IN NPA, SERINE/THREONINE PROTEIN PHOSPHATASE TYPE 2A REGULATORY SUBUNIT A gene RCN1 function One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component protein phosphatase type 2A complex|GO:0000159|8641277|TAS go_process response to ethylene stimulus|GO:0009723|11161061|IMP go_process abscisic acid mediated signaling pathway|GO:0009738|12417706|TAS go_process positive regulation of abscisic acid mediated signaling pathway|GO:0009789|12417706|IMP go_process auxin polar transport|GO:0009926|11449059|IDA go_process regulation of stomatal movement|GO:0010119|12417706|IMP go_function protein phosphatase type 2A regulator activity|GO:0008601|8641277|IGI go_function protein phosphatase type 2A regulator activity|GO:0008601|8641277|ISS product ARM repeat superfamily protein note ROOTS CURL IN NPA (RCN1); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to ethylene stimulus, abscisic acid mediated signaling pathway, regulation of stomatal movement, positive regulation of abscisic acid mediated signaling pathway, auxin polar transport; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1); Has 2785 Blast hits to 1557 proteins in 250 species: Archae - 15; Bacteria - 74; Metazoa - 1400; Fungi - 416; Plants - 342; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). protein_id AT1G25490.1p transcript_id AT1G25490.1 protein_id AT1G25490.1p transcript_id AT1G25490.1
At1g25500	chr1:008955437	0.0	C/8955437-8955616,8955708-8955941,8956040-8956156,8956242-8956469,8956584-8956767,8956865-8957162,8957243-8957294	AT1G25500.3 CDS Plasma-membrane choline transporter family protein [TAIR10] CDS gene_syn F2J7.7, F2J7_7 go_process biological_process|GO:0008150||ND product Plasma-membrane choline transporter family protein note Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G25500.3p transcript_id AT1G25500.3 protein_id AT1G25500.3p transcript_id AT1G25500.3
At1g25500	chr1:008955437	0.0	C/8955437-8955616,8955708-8955941,8956040-8956156,8956242-8956469,8956584-8956767,8956865-8957322,8957728-8957793	AT1G25500.2 CDS Plasma-membrane choline transporter family protein [TAIR10] CDS gene_syn F2J7.7, F2J7_7 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND product Plasma-membrane choline transporter family protein note Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 973 Blast hits to 970 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 169; Plants - 182; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink). protein_id AT1G25500.2p transcript_id AT1G25500.2 protein_id AT1G25500.2p transcript_id AT1G25500.2
At1g25500	chr1:008955595	0.0	C/8955595-8955606,8955708-8955941,8956040-8956156,8956242-8956469,8956584-8956767,8956865-8957010	AT1G25500.1 CDS Plasma-membrane choline transporter family protein [TAIR10] CDS gene_syn F2J7.7, F2J7_7 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND product Plasma-membrane choline transporter family protein note Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G25500.1p transcript_id AT1G25500.1 protein_id AT1G25500.1p transcript_id AT1G25500.1
At1g25510	chr1:008959372	0.0	C/8959372-8960823	AT1G25510.1 CDS Eukaryotic aspartyl protease family protein [TAIR10] CDS gene_syn F2J7.6, F2J7_6 go_component endomembrane system|GO:0012505||IEA go_process proteolysis|GO:0006508||IEA go_function aspartic-type endopeptidase activity|GO:0004190||IEA go_process proteolysis|GO:0006508||ISS product Eukaryotic aspartyl protease family protein note Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G18490.1); Has 4139 Blast hits to 4120 proteins in 342 species: Archae - 0; Bacteria - 0; Metazoa - 1183; Fungi - 740; Plants - 2035; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). protein_id AT1G25510.1p transcript_id AT1G25510.1 protein_id AT1G25510.1p transcript_id AT1G25510.1
At1g25520	chr1:008962324	0.0	W/8962324-8962341,8962432-8962500,8962818-8962877,8962964-8963011,8963097-8963188,8963268-8963304,8963387-8963434,8963518-8963586,8963664-8963708,8963779-8963840,8963940-8964012,8964102-8964173	AT1G25520.1 CDS Uncharacterized protein family (UPF0016) [TAIR10] CDS gene_syn F2J7.20, F2J7_20 go_component membrane|GO:0016020||IEA go_process response to karrikin|GO:0080167|20351290|IEP product Uncharacterized protein family (UPF0016) note Uncharacterized protein family (UPF0016); INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G68650.1); Has 1806 Blast hits to 1733 proteins in 669 species: Archae - 27; Bacteria - 1021; Metazoa - 159; Fungi - 140; Plants - 210; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink). protein_id AT1G25520.1p transcript_id AT1G25520.1 protein_id AT1G25520.1p transcript_id AT1G25520.1
At1g25530	chr1:008964827	0.0	C/8964827-8964925,8965014-8965082,8965188-8965279,8965386-8965885,8966536-8966919,8967146-8967291,8967359-8967391	AT1G25530.1 CDS Transmembrane amino acid transporter family protein [TAIR10] CDS gene_syn F2J7.5, F2J7_5 go_component membrane|GO:0016020||ISS go_process amino acid transport|GO:0006865||ISS go_function amino acid transmembrane transporter activity|GO:0015171||ISS product Transmembrane amino acid transporter family protein note Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine histidine transporter 1 (TAIR:AT5G40780.1); Has 3229 Blast hits to 3219 proteins in 255 species: Archae - 4; Bacteria - 28; Metazoa - 882; Fungi - 529; Plants - 1538; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink). protein_id AT1G25530.1p transcript_id AT1G25530.1 protein_id AT1G25530.1p transcript_id AT1G25530.1
At1g25540	chr1:008969392	0.0	C/8969392-8969895,8969979-8970065,8970407-8970491,8970587-8970655,8970788-8970816,8970963-8971016,8971092-8971889,8972189-8972256,8972373-8972589,8972733-8972798,8972891-8973094,8973299-8973301	AT1G25540.2 CDS phytochrome and flowering time regulatory protein (PFT1) [TAIR10] CDS gene_syn F2J7.4, F2J7_4, PFT1, PHYTOCHROME AND FLOWERING TIME 1 gene PFT1 function Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense. go_component nucleus|GO:0005634|12815435|IDA go_component mediator complex|GO:0016592|17560376|IDA go_process red, far-red light phototransduction|GO:0009585|18790998|IMP go_process jasmonic acid mediated signaling pathway|GO:0009867|19671879|IMP go_process regulation of flower development|GO:0009909|17916114|IMP go_process response to red light|GO:0010114|12815435|IMP go_process response to far red light|GO:0010218|12815435|IMP go_process positive regulation of defense response|GO:0031349|19671879|IMP go_process positive regulation of transcription|GO:0045941|12815435|IMP go_process positive regulation of transcription|GO:0045941|19671879|IMP go_process defense response to fungus|GO:0050832|19671879|IMP go_function transcription coactivator activity|GO:0003713|12815435|NAS product phytochrome and flowering time regulatory protein (PFT1) note PHYTOCHROME AND FLOWERING TIME 1 (PFT1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: in 8 processes; LOCATED IN: mediator complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25, von Willebrand factor type A (InterPro:IPR021419); Has 143907 Blast hits to 47238 proteins in 2114 species: Archae - 36; Bacteria - 15136; Metazoa - 49480; Fungi - 14034; Plants - 10447; Viruses - 822; Other Eukaryotes - 53952 (source: NCBI BLink). protein_id AT1G25540.2p transcript_id AT1G25540.2 protein_id AT1G25540.2p transcript_id AT1G25540.2
At1g25540	chr1:008969392	0.0	C/8969392-8969895,8969979-8970065,8970407-8970491,8970587-8970655,8970788-8970816,8970963-8971016,8971092-8971889,8972189-8972256,8972373-8972589,8972733-8972798,8972891-8973094,8973299-8973429,8973551-8973614,8973807-8973837,8974343-8974446	AT1G25540.1 CDS phytochrome and flowering time regulatory protein (PFT1) [TAIR10] CDS gene_syn F2J7.4, F2J7_4, PFT1, PHYTOCHROME AND FLOWERING TIME 1 gene PFT1 function Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense. go_component nucleus|GO:0005634|12815435|IDA go_component mediator complex|GO:0016592|17560376|IDA go_process red, far-red light phototransduction|GO:0009585|18790998|IMP go_process jasmonic acid mediated signaling pathway|GO:0009867|19671879|IMP go_process regulation of flower development|GO:0009909|17916114|IMP go_process response to red light|GO:0010114|12815435|IMP go_process response to far red light|GO:0010218|12815435|IMP go_process positive regulation of defense response|GO:0031349|19671879|IMP go_process positive regulation of transcription|GO:0045941|12815435|IMP go_process positive regulation of transcription|GO:0045941|19671879|IMP go_process defense response to fungus|GO:0050832|19671879|IMP go_function transcription coactivator activity|GO:0003713|12815435|NAS product phytochrome and flowering time regulatory protein (PFT1) note PHYTOCHROME AND FLOWERING TIME 1 (PFT1); CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25, von Willebrand factor type A (InterPro:IPR021419), von Willebrand factor, type A (InterPro:IPR002035); Has 144499 Blast hits to 47376 proteins in 2113 species: Archae - 36; Bacteria - 15041; Metazoa - 49547; Fungi - 14283; Plants - 10465; Viruses - 822; Other Eukaryotes - 54305 (source: NCBI BLink). protein_id AT1G25540.1p transcript_id AT1G25540.1 protein_id AT1G25540.1p transcript_id AT1G25540.1
At1g25550	chr1:008976644	0.0	W/8976644-8976788,8976881-8977435,8977523-8977599,8977685-8977942	AT1G25550.1 CDS myb-like transcription factor family protein [TAIR10] CDS go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb-like transcription factor family protein note myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT1G68670.1); Has 1641 Blast hits to 1637 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1615; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G25550.1p transcript_id AT1G25550.1 protein_id AT1G25550.1p transcript_id AT1G25550.1
AT1G25550	chr1:008976644	0.0	W/8976644-8976788,8976881-8977435,8977523-8977656	AT1G25550.2 AT1G25550.2 CDS myb-like transcription factor family protein
At1g25560	chr1:008981891	0.0	C/8981891-8982976	AT1G25560.1 CDS AP2/B3 transcription factor family protein [TAIR10] CDS gene_syn EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, F2J7.3, F2J7_3, TEM1, TEMPRANILLO 1 gene TEM1 function Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT. Novel transcriptional regulator involved in ethylene signaling. Promoter bound by EIN3. EDF1 in turn, binds to promoter elements in ethylene responsive genes. go_component chloroplast|GO:0009507||IEA go_process ethylene mediated signaling pathway|GO:0009873||NAS go_function DNA binding|GO:0003677||NAS go_process photoperiodism, flowering|GO:0048573|18718758|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product AP2/B3 transcription factor family protein note TEMPRANILLO 1 (TEM1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: photoperiodism, flowering, ethylene mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to ABI3/VP1 2 (TAIR:AT1G68840.2); Has 6413 Blast hits to 6197 proteins in 270 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6380; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). protein_id AT1G25560.1p transcript_id AT1G25560.1 protein_id AT1G25560.1p transcript_id AT1G25560.1
At1g25570	chr1:008992183	0.0	C/8992183-8992292,8992382-8992590,8992725-8992802,8992987-8993055,8993279-8993347,8993488-8993559,8993936-8994086,8994224-8995273,8995352-8995430	AT1G25570.1 CDS Di-glucose binding protein with Leucine-rich repeat domain [TAIR10] CDS gene_syn F2J7.2 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA product Di-glucose binding protein with Leucine-rich repeat domain note Di-glucose binding protein with Leucine-rich repeat domain; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 4 (TAIR:AT1G28340.1); Has 39900 Blast hits to 11672 proteins in 418 species: Archae - 2; Bacteria - 388; Metazoa - 87; Fungi - 9; Plants - 38059; Viruses - 0; Other Eukaryotes - 1355 (source: NCBI BLink). protein_id AT1G25570.1p transcript_id AT1G25570.1 protein_id AT1G25570.1p transcript_id AT1G25570.1
At1g25580	chr1:008997064	0.0	C/8997064-8997117,8997206-8997649,8998012-8998526,8998616-8998802,8998894-8999035,8999593-8999600	AT1G25580.1 CDS NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [TAIR10] CDS gene_syn ANAC008, Arabidopsis NAC domain containing protein 8, F2J7.1, SOG1, SUPPRESSOR OF GAMMA RADIATION 1 gene SOG1 function Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. go_component cellular_component|GO:0005575||ND go_process DNA damage checkpoint|GO:0000077|12750343|IMP go_process regulation of meiosis|GO:0040020|12750343|IMP go_process multicellular organismal development|GO:0007275||ISS go_process response to gamma radiation|GO:0010332|19549833|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC (No Apical Meristem) domain transcriptional regulator superfamily protein note SUPPRESSOR OF GAMMA RADIATION 1 (SOG1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, response to gamma radiation, DNA damage checkpoint, regulation of meiosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 85 (TAIR:AT5G14490.1); Has 2166 Blast hits to 2160 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 5; Plants - 2134; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G25580.1p transcript_id AT1G25580.1 protein_id AT1G25580.1p transcript_id AT1G25580.1
At1g25682	chr1:009002532	0.0	C/9002532-9002885,9002970-9003133,9003254-9003413,9003545-9003653,9003951-9004093,9004548-9004550	AT1G25682.1 CDS coiled-coil protein (DUF572) [TAIR10] CDS gene_syn F14G11.11, F14G11_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Family of unknown function (DUF572) note Family of unknown function (DUF572) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT1G25988.1); Has 717 Blast hits to 715 proteins in 213 species: Archae - 0; Bacteria - 6; Metazoa - 235; Fungi - 232; Plants - 115; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). protein_id AT1G25682.1p transcript_id AT1G25682.1 protein_id AT1G25682.1p transcript_id AT1G25682.1
AT1G25682	chr1:009002532	0.0	C/9002532-9002885,9002970-9003133,9003254-9003413,9003545-9003653,9003951-9004093,9004548-9004550	AT1G25682.2 AT1G25682.2 CDS coiled-coil protein (DUF572)
At1g25784	chr1:009005557	0.0	W/9005557-9010027	AT1G25784.1 [TAIR10] mRNA
At1g25784	chr1:009005557	0.0	W/9005557-9010027	AT1G25784 [TAIR10] TE pseudo gene_syn F14G11.3, F14G11_3 note Transposable element gene, Mutator-like transposase family, has a 3.7e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)
At1g25886	chr1:009010258	0.0	C/9010258-9011007,9011113-9011197,9011284-9011543,9011610-9011711,9011807-9011866,9011949-9012038,9012143-9012232,9012305-9012430,9012529-9012693,9012780-9012905,9012978-9013576,9013665-9013863,9014038-9014867,9015103-9015226	AT1G25886.1 [TAIR10] mRNA
At1g25886	chr1:009010258	0.0	C/9010258-9015226	AT1G25886 [TAIR10] TE pseudo gene_syn F14G11.4, F14G11_4 note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14770.2); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
At1g25988	chr1:009016252	0.0	C/9016252-9016372,9016455-9016563,9016672-9016797,9016918-9017023,9017370-9017450	AT1G25988.1 CDS coiled-coil protein, putative (DUF572) [TAIR10] CDS gene_syn F14G11.5, F14G11_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Family of unknown function (DUF572) note Family of unknown function (DUF572) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT1G25682.1); Has 183 Blast hits to 183 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 16; Plants - 54; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G25988.1p transcript_id AT1G25988.1 protein_id AT1G25988.1p transcript_id AT1G25988.1
At1g26090	chr1:009020509	0.0	W/9020509-9020748,9020973-9021116,9021211-9021285,9021381-9021574,9021663-9021834,9021913-9022323,9022488-9022619	AT1G26090.1 CDS P-loop containing nucleoside triphosphate hydrolases superfamily protein [TAIR10] CDS gene_syn F14G11.6 go_component chloroplast|GO:0009507|18431481|IDA go_component plastoglobule|GO:0010287|16414959|IDA go_component plastoglobule|GO:0010287|16461379|IDA product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1161 Blast hits to 1150 proteins in 416 species: Archae - 94; Bacteria - 665; Metazoa - 113; Fungi - 156; Plants - 46; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). protein_id AT1G26090.1p transcript_id AT1G26090.1 protein_id AT1G26090.1p transcript_id AT1G26090.1
At1g26100	chr1:009022716	0.0	C/9022716-9023054,9023486-9023682,9023814-9023865,9023959-9024081	AT1G26100.1 CDS Cytochrome b561/ferric reductase transmembrane protein family [TAIR10] CDS gene_syn F14G11.7, F14G11_7 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_component integral to membrane|GO:0016021||ISS go_function carbon-monoxide oxygenase activity|GO:0008805||ISS product Cytochrome b561/ferric reductase transmembrane protein family note Cytochrome b561/ferric reductase transmembrane protein family; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1); Has 590 Blast hits to 588 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 7; Plants - 186; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G26100.1p transcript_id AT1G26100.1 protein_id AT1G26100.1p transcript_id AT1G26100.1
At1g26110	chr1:009024616	0.0	C/9024616-9024807,9024947-9025057,9025138-9025311,9025440-9025473,9025605-9025624,9025797-9026756,9026847-9026921,9027001-9027101,9027406-9027556	AT1G26110.2 CDS decapping 5 [TAIR10] CDS gene_syn DCP5, F14G11.8, F14G11_8, decapping 5 gene DCP5 function Encodes Decapping 5, required for mRNA decapping, P-body formation and translational repression during postembryonic development. go_component cellular_component|GO:0005575||ND go_process negative regulation of translation|GO:0017148|19855049|IMP go_process deadenylation-independent decapping of nuclear-transcribed mRNA|GO:0031087|19855049|IMP go_process cytoplasmic mRNA processing body assembly|GO:0033962|19855049|IMP go_function molecular_function|GO:0003674||ND product decapping 5 note decapping 5 (DCP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of translation, deadenylation-independent decapping of nuclear-transcribed mRNA, cytoplasmic mRNA processing body assembly; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DFDF motif (InterPro:IPR019050), FFD/TFG box motif (InterPro:IPR019053); BEST Arabidopsis thaliana protein match is: decapping 5-like (TAIR:AT5G45330.1); Has 14874 Blast hits to 10327 proteins in 603 species: Archae - 12; Bacteria - 902; Metazoa - 6418; Fungi - 2978; Plants - 1226; Viruses - 261; Other Eukaryotes - 3077 (source: NCBI BLink). protein_id AT1G26110.2p transcript_id AT1G26110.2 protein_id AT1G26110.2p transcript_id AT1G26110.2
At1g26110	chr1:009024616	0.0	C/9024616-9024807,9024947-9025057,9025138-9025311,9025440-9025511,9025797-9026756,9026847-9026921,9027001-9027101,9027406-9027556	AT1G26110.1 CDS decapping 5 [TAIR10] CDS gene_syn DCP5, F14G11.8, F14G11_8, decapping 5 gene DCP5 function Encodes Decapping 5, required for mRNA decapping, P-body formation and translational repression during postembryonic development. go_component cellular_component|GO:0005575||ND go_process negative regulation of translation|GO:0017148|19855049|IMP go_process deadenylation-independent decapping of nuclear-transcribed mRNA|GO:0031087|19855049|IMP go_process cytoplasmic mRNA processing body assembly|GO:0033962|19855049|IMP go_function molecular_function|GO:0003674||ND product decapping 5 note decapping 5 (DCP5); CONTAINS InterPro DOMAIN/s: DFDF motif (InterPro:IPR019050), FFD/TFG box motif (InterPro:IPR019053); BEST Arabidopsis thaliana protein match is: decapping 5-like (TAIR:AT5G45330.1); Has 46741 Blast hits to 20189 proteins in 1086 species: Archae - 36; Bacteria - 10029; Metazoa - 17132; Fungi - 5632; Plants - 6968; Viruses - 649; Other Eukaryotes - 6295 (source: NCBI BLink). protein_id AT1G26110.1p transcript_id AT1G26110.1 protein_id AT1G26110.1p transcript_id AT1G26110.1
At1g26120	chr1:009028656	0.0	C/9028656-9028808,9028895-9028985,9029076-9029219,9029329-9029394,9029767-9029907,9029996-9030097,9030226-9030300,9030401-9030481,9030597-9030666,9030764-9030840,9030972-9031402	AT1G26120.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F14G11.9, F14G11_9, ICME-LIKE1, Isoprenylcysteine methylesterase-like 1 gene ICME-LIKE1 go_process metabolic process|GO:0008152||IEA go_function hydrolase activity|GO:0016787||IEA go_component cellular_component|GO:0005575||ND product alpha/beta-Hydrolases superfamily protein note Isoprenylcysteine methylesterase-like 1 (ICME-LIKE1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Carboxylesterase, type B (InterPro:IPR002018), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: prenylcysteine methylesterase (TAIR:AT5G15860.1); Has 9242 Blast hits to 9224 proteins in 1573 species: Archae - 109; Bacteria - 5404; Metazoa - 1813; Fungi - 590; Plants - 239; Viruses - 5; Other Eukaryotes - 1082 (source: NCBI BLink). protein_id AT1G26120.1p transcript_id AT1G26120.1 protein_id AT1G26120.1p transcript_id AT1G26120.1
At1g26130	chr1:009033600	0.0	W/9033600-9034004,9034274-9035619,9035703-9035813,9035887-9036163,9036256-9036344,9036447-9036552,9036669-9036878,9036969-9037094,9037176-9037274,9037371-9037562,9037653-9038246	AT1G26130.1 CDS ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [TAIR10] CDS gene_syn F28B23.19, F28B23_19 go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process ATP biosynthetic process|GO:0006754||IEA go_process metabolic process|GO:0008152||IEA go_process phospholipid transport|GO:0015914||IEA go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS product ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein note ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G68710.1); Has 13123 Blast hits to 11750 proteins in 1668 species: Archae - 131; Bacteria - 4350; Metazoa - 3110; Fungi - 2069; Plants - 970; Viruses - 2; Other Eukaryotes - 2491 (source: NCBI BLink). protein_id AT1G26130.1p transcript_id AT1G26130.1 protein_id AT1G26130.1p transcript_id AT1G26130.1
At1g26130	chr1:009033600	0.0	W/9033600-9034004,9034274-9035619,9035703-9035813,9035887-9036163,9036256-9036344,9036447-9036555,9036669-9036878,9036969-9037094,9037176-9037274,9037371-9037562,9037653-9038246	AT1G26130.2 CDS ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [TAIR10] CDS gene_syn F28B23.19, F28B23_19 go_process ATP biosynthetic process|GO:0006754||IEA go_process metabolic process|GO:0008152||IEA go_process phospholipid transport|GO:0015914||IEA go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS product ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein note ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, phospholipid transport, ATP biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G68710.1). protein_id AT1G26130.2p transcript_id AT1G26130.2 protein_id AT1G26130.2p transcript_id AT1G26130.2
AT1G26130	chr1:009033600	0.0	W/9033600-9034004,9034274-9035619,9035703-9035813,9035887-9036163,9036256-9036344,9036447-9036555,9036669-9036878,9036969-9037094,9037176-9037274,9037371-9037562,9037653-9038246	AT1G26130.3 AT1G26130.3 CDS ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
AT1G26130	chr1:009033600	0.0	W/9033600-9034004,9034274-9035619,9035703-9035813,9035887-9036163,9036256-9036344,9036447-9036555,9036669-9036878,9036969-9037094,9037176-9037274,9037371-9037562,9037653-9038246	AT1G26130.4 AT1G26130.4 CDS ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
At1g26140	chr1:009038708	0.0	C/9038708-9039083,9039428-9039540	AT1G26140.1 CDS hypothetical protein [TAIR10] CDS gene_syn F28B23.18, F28B23_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68700.1); Has 35 Blast hits to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26140.1p transcript_id AT1G26140.1 protein_id AT1G26140.1p transcript_id AT1G26140.1
At1g26150	chr1:009039790	0.0	C/9039790-9039984,9040057-9040218,9040296-9040443,9040539-9040615,9040705-9040775,9040898-9040984,9041060-9041470,9041736-9042873	AT1G26150.1 CDS proline-rich extensin-like receptor kinase 10 [TAIR10] CDS gene_syn ATPERK10, F28B23.17, F28B23_17, PERK10, proline-rich extensin-like receptor kinase 10 gene PERK10 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function protein kinase activity|GO:0004672||ISS product proline-rich extensin-like receptor kinase 10 note proline-rich extensin-like receptor kinase 10 (PERK10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G68690.1); Has 549801 Blast hits to 257836 proteins in 6063 species: Archae - 1062; Bacteria - 108998; Metazoa - 204590; Fungi - 81234; Plants - 75274; Viruses - 10972; Other Eukaryotes - 67671 (source: NCBI BLink). protein_id AT1G26150.1p transcript_id AT1G26150.1 protein_id AT1G26150.1p transcript_id AT1G26150.1
AT1G26150	chr1:009040281	0.0	C/9040281-9040443,9040539-9040615,9040705-9040775,9040898-9040984,9041060-9041470,9041736-9042873	AT1G26150.2 AT1G26150.2 CDS proline-rich extensin-like receptor kinase 10
At1g26160	chr1:009044784	0.0	C/9044784-9044869,9044951-9044992,9045085-9045121,9045240-9045319,9045401-9045511,9045835-9045872,9046403-9046527,9046688-9046945	AT1G26160.1 CDS Metal-dependent phosphohydrolase [TAIR10] CDS gene_syn F28B23.16, F28B23_16 go_component chloroplast|GO:0009507|18431481|IDA go_function catalytic activity|GO:0003824||IEA go_process biological_process|GO:0008150||ND go_function catalytic activity|GO:0003824||ISS product Metal-dependent phosphohydrolase note Metal-dependent phosphohydrolase; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: Metal-dependent phosphohydrolase (TAIR:AT2G23820.2); Has 1552 Blast hits to 1531 proteins in 690 species: Archae - 126; Bacteria - 959; Metazoa - 120; Fungi - 153; Plants - 73; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). protein_id AT1G26160.1p transcript_id AT1G26160.1 protein_id AT1G26160.1p transcript_id AT1G26160.1
AT1G26160	chr1:009045198	0.0	C/9045198-9045319,9045401-9045511,9045835-9045872,9046403-9046527,9046688-9046945	AT1G26160.2 AT1G26160.2 CDS Metal-dependent phosphohydrolase
At1g26170	chr1:009047539	0.0	C/9047539-9047589,9047671-9047751,9047847-9047900,9047979-9048104,9048197-9048262,9048457-9048534,9048624-9048736,9048848-9048962,9049096-9049285,9049621-9049730,9049811-9049906,9050005-9050067,9050174-9050251,9050410-9050522,9050618-9050675,9050762-9050885,9050962-9051023,9051102-9051166,9051253-9051322,9051406-9051465,9051642-9051772,9051903-9051978,9052290-9052358,9052450-9052497,9052649-9052791,9052878-9052941,9053043-9053159,9053252-9053338,9053464-9053579,9053704-9053875,9053958-9054050,9054155-9054216,9054321-9054438	AT1G26170.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn F28B23.15, F28B23_15 go_process intracellular protein transport|GO:0006886||IEA go_function binding|GO:0005488||IEA go_function protein transporter activity|GO:0008565||IEA go_component nucleus|GO:0005634||ISS go_component nuclear pore|GO:0005643||ISS go_component cytoplasm|GO:0005737||ISS go_process protein import into nucleus, docking|GO:0000059||ISS go_function protein transporter activity|GO:0008565||ISS product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G26170.1p transcript_id AT1G26170.1 protein_id AT1G26170.1p transcript_id AT1G26170.1
At1g26180	chr1:009054824	0.0	W/9054824-9055171,9055393-9055473,9055578-9055637,9055720-9055763,9055918-9055960,9056053-9056124,9056217-9056318,9056407-9056526	AT1G26180.1 CDS membrane protein [TAIR10] CDS gene_syn F28B23.14, F28B23_14 product unknown protein note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). protein_id AT1G26180.1p transcript_id AT1G26180.1 protein_id AT1G26180.1p transcript_id AT1G26180.1
AT1G26180	chr1:009054824	0.0	W/9054824-9055171,9055393-9055473,9055578-9055637,9055720-9055763,9055918-9055999	AT1G26180.2 AT1G26180.2 CDS membrane protein
AT1G26190	chr1:009057285	0.0	C/9057285-9057539,9057623-9057895,9057990-9058104,9058188-9058315,9058394-9058516,9058670-9058864,9058998-9059171,9059293-9059406,9059497-9059692,9059874-9059988,9060097-9060145	AT1G26190.5 AT1G26190.5 CDS Phosphoribulokinase / Uridine kinase family
At1g26190	chr1:009057285	0.0	C/9057285-9057539,9057623-9057895,9057990-9058104,9058188-9058315,9058394-9058516,9058670-9058864,9058998-9059171,9059293-9059406,9059497-9059692,9059874-9059988,9060097-9060433	AT1G26190.1 CDS Phosphoribulokinase / Uridine kinase family [TAIR10] CDS gene_syn F28B23.13, F28B23_13 go_process cAMP biosynthetic process|GO:0006171||IEA go_process metabolic process|GO:0008152||IEA go_function adenylate cyclase activity|GO:0004016||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||IEA go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA go_component cellular_component|GO:0005575||ND go_process biosynthetic process|GO:0009058||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product Phosphoribulokinase / Uridine kinase family note Phosphoribulokinase / Uridine kinase family; FUNCTIONS IN: adenylate cyclase activity, kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process, cAMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764), Adenylate cyclase (InterPro:IPR008172); BEST Arabidopsis thaliana protein match is: Phosphoribulokinase / Uridine kinase family (TAIR:AT1G73980.1); Has 4771 Blast hits to 4715 proteins in 1747 species: Archae - 39; Bacteria - 3460; Metazoa - 396; Fungi - 136; Plants - 334; Viruses - 2; Other Eukaryotes - 404 (source: NCBI BLink). protein_id AT1G26190.1p transcript_id AT1G26190.1 protein_id AT1G26190.1p transcript_id AT1G26190.1
AT1G26190	chr1:009057476	0.0	C/9057476-9057895,9057990-9058104,9058188-9058315,9058394-9058516,9058670-9058864,9058998-9059171,9059293-9059406,9059497-9059692,9059874-9059988,9060097-9060433	AT1G26190.6 AT1G26190.6 CDS Phosphoribulokinase / Uridine kinase family
AT1G26190	chr1:009057802	0.0	C/9057802-9057873,9057990-9058104,9058188-9058315,9058394-9058516,9058670-9058864,9058998-9059171,9059293-9059406,9059497-9059692,9059874-9059988,9060097-9060433	AT1G26190.4 AT1G26190.4 CDS Phosphoribulokinase / Uridine kinase family
AT1G26190	chr1:009057930	0.0	C/9057930-9058104,9058188-9058315,9058394-9058516,9058670-9058864,9058998-9059171,9059293-9059406,9059497-9059692,9059874-9059988,9060097-9060433	AT1G26190.3 AT1G26190.3 CDS Phosphoribulokinase / Uridine kinase family
AT1G26190	chr1:009058127	0.0	C/9058127-9058315,9058394-9058516,9058670-9058864,9058998-9059171,9059293-9059406,9059497-9059692,9059874-9059988,9060097-9060433	AT1G26190.2 AT1G26190.2 CDS Phosphoribulokinase / Uridine kinase family
At1g26200	chr1:009063471	0.0	C/9063471-9063505,9063617-9063822,9063931-9064116,9064210-9064365,9064454-9064674,9064780-9064914	AT1G26200.1 CDS TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [TAIR10] CDS gene_syn F28B23.26 go_component integral to membrane|GO:0016021||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein note TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 longevity assurance homolog 3 (TAIR:AT1G13580.3); Has 1245 Blast hits to 1245 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 593; Fungi - 293; Plants - 188; Viruses - 3; Other Eukaryotes - 168 (source: NCBI BLink). protein_id AT1G26200.1p transcript_id AT1G26200.1 protein_id AT1G26200.1p transcript_id AT1G26200.1
AT1G26200	chr1:009063471	0.0	C/9063471-9063505,9063617-9063855,9063931-9064116,9064210-9064365,9064454-9064674,9064780-9064914	AT1G26200.3 AT1G26200.3 CDS TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
AT1G26200	chr1:009063918	0.0	C/9063918-9064116,9064210-9064365,9064454-9064674,9064780-9064914	AT1G26200.2 AT1G26200.2 CDS TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
At1g26208	chr1:009066636	0.0	C/9066636-9067301,9067381-9067837,9068057-9068432	AT1G26208.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G26210 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G26208.1
At1g26210	chr1:009067524	0.0	W/9067524-9067970	AT1G26210.1 CDS SOB five-like 1 [TAIR10] CDS gene_syn ATSOFL1, F28B23.12, F28B23_12, SOB FIVE-LIKE 1, SOB five-like 1, SOFL1 gene SOFL1 function AtSOFL1 acts redundantly with AtSOFL2 as positive regulator of cytokinin levels. go_component cellular_component|GO:0005575||ND go_process cytokinin metabolic process|GO:0009690|20011053|IMP go_process developmental process|GO:0032502|20011053|IGI go_function molecular_function|GO:0003674||ND product SOB five-like 1 note SOB five-like 1 (SOFL1); BEST Arabidopsis thaliana protein match is: SOB five-like 2 (TAIR:AT1G68870.1); Has 495 Blast hits to 457 proteins in 104 species: Archae - 0; Bacteria - 20; Metazoa - 127; Fungi - 76; Plants - 112; Viruses - 7; Other Eukaryotes - 153 (source: NCBI BLink). protein_id AT1G26210.1p transcript_id AT1G26210.1 protein_id AT1G26210.1p transcript_id AT1G26210.1
At1g26208	chr1:009067732	0.0	C/9067732-9067841,9068057-9068246,9069033-9069238	AT1G26208.2 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G26210 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G26208.2
At1g26218	chr1:009071058	0.0	C/9071058-9071891,9071973-9072273	AT1G26218.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G26220 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G26218.1
At1g26220	chr1:009071157	0.0	W/9071157-9071750	AT1G26220.1 CDS Acyl-CoA N-acyltransferases (NAT) superfamily protein [TAIR10] CDS gene_syn F28B23.27, F28B23_27 go_component chloroplast|GO:0009507|18431481|IDA go_process metabolic process|GO:0008152||IEA go_function N-acetyltransferase activity|GO:0008080||IEA go_process metabolic process|GO:0008152||ISS go_function N-acetyltransferase activity|GO:0008080||ISS product Acyl-CoA N-acyltransferases (NAT) superfamily protein note Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: nuclear shuttle interacting (TAIR:AT1G32070.3); Has 1297 Blast hits to 1297 proteins in 410 species: Archae - 14; Bacteria - 927; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). protein_id AT1G26220.1p transcript_id AT1G26220.1 protein_id AT1G26220.1p transcript_id AT1G26220.1
AT1G26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075023	AT1G26230.10 AT1G26230.10 CDS TCP-1/cpn60 chaperonin family protein
AT1G26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.12 AT1G26230.12 CDS TCP-1/cpn60 chaperonin family protein
At1g26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.1 CDS TCP-1/cpn60 chaperonin family protein [TAIR10] CDS gene_syn F28B23.11, F28B23_11 go_component chloroplast|GO:0009507|18431481|IDA go_process protein refolding|GO:0042026||IEA go_process cellular protein metabolic process|GO:0044267||IEA go_function ATP binding|GO:0005524||IEA product TCP-1/cpn60 chaperonin family protein note TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein refolding, cellular protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2); Has 34077 Blast hits to 34022 proteins in 8740 species: Archae - 776; Bacteria - 21861; Metazoa - 1711; Fungi - 1609; Plants - 849; Viruses - 2; Other Eukaryotes - 7269 (source: NCBI BLink). protein_id AT1G26230.1p transcript_id AT1G26230.1 protein_id AT1G26230.1p transcript_id AT1G26230.1
AT1G26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.3 AT1G26230.3 CDS TCP-1/cpn60 chaperonin family protein
AT1G26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.4 AT1G26230.4 CDS TCP-1/cpn60 chaperonin family protein
AT1G26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.5 AT1G26230.5 CDS TCP-1/cpn60 chaperonin family protein
AT1G26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.6 AT1G26230.6 CDS TCP-1/cpn60 chaperonin family protein
AT1G26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.7 AT1G26230.7 CDS TCP-1/cpn60 chaperonin family protein
AT1G26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075047	AT1G26230.11 AT1G26230.11 CDS TCP-1/cpn60 chaperonin family protein
At1g26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075047	AT1G26230.2 CDS TCP-1/cpn60 chaperonin family protein [TAIR10] CDS gene_syn F28B23.11, F28B23_11 go_process protein refolding|GO:0042026||IEA go_process cellular protein metabolic process|GO:0044267||IEA go_function ATP binding|GO:0005524||IEA product TCP-1/cpn60 chaperonin family protein note TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein refolding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2). protein_id AT1G26230.2p transcript_id AT1G26230.2 protein_id AT1G26230.2p transcript_id AT1G26230.2
AT1G26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075047	AT1G26230.9 AT1G26230.9 CDS TCP-1/cpn60 chaperonin family protein
AT1G26225	chr1:009072634	0.0	W/9072634-9072798	AT1G26225.1 AT1G26225.1 CDS hypothetical protein
AT1G26230	chr1:009072715	0.0	C/9072715-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.8 AT1G26230.8 CDS TCP-1/cpn60 chaperonin family protein
AT1G26230	chr1:009073110	0.0	C/9073110-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.13 AT1G26230.13 CDS TCP-1/cpn60 chaperonin family protein
At1g26233	chr1:009076048	0.0	C/9076048-9076182	AT1G26233.1 [TAIR10] snoRNA gene_syn SNOR95, small nucleolar RNA95 gene SNOR95 function Encodes a H/ACA-box snoRNA (snoR95). Gb: AJ505672 go_component box H/ACA snoRNP complex|GO:0031429||TAS go_process rRNA modification|GO:0000154||TAS go_function molecular_function|GO:0003674||ND product SNOR95 (small nucleolar RNA95); snoRNA transcript_id AT1G26233.1
At1g26235	chr1:009076447	0.0	C/9076447-9076572	AT1G26235.1 [TAIR10] ncRNA function Encodes a snmRNA. Gb: AJ505711 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G26235.1
At1g26240	chr1:009078140	0.0	C/9078140-9079576	AT1G26240.1 CDS Proline-rich extensin-like family protein [TAIR10] CDS gene_syn F28B23.10, F28B23_10 go_component endomembrane system|GO:0012505||IEA go_process plant-type cell wall organization|GO:0009664||IEA go_function structural constituent of cell wall|GO:0005199||IEA product Proline-rich extensin-like family protein note Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G08370.1); Has 364257 Blast hits to 37887 proteins in 1520 species: Archae - 1099; Bacteria - 63371; Metazoa - 128573; Fungi - 46566; Plants - 64812; Viruses - 9875; Other Eukaryotes - 49961 (source: NCBI BLink). protein_id AT1G26240.1p transcript_id AT1G26240.1 protein_id AT1G26240.1p transcript_id AT1G26240.1
At1g26250	chr1:009083903	0.0	W/9083903-9085234	AT1G26250.1 CDS Proline-rich extensin-like family protein [TAIR10] CDS gene_syn F28B23.9, F28B23_9 go_component endomembrane system|GO:0012505||IEA go_process plant-type cell wall organization|GO:0009664||IEA go_function structural constituent of cell wall|GO:0005199||IEA product Proline-rich extensin-like family protein note Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G08370.1); Has 289174 Blast hits to 44674 proteins in 1767 species: Archae - 806; Bacteria - 48932; Metazoa - 103337; Fungi - 38580; Plants - 50919; Viruses - 7655; Other Eukaryotes - 38945 (source: NCBI BLink). protein_id AT1G26250.1p transcript_id AT1G26250.1 protein_id AT1G26250.1p transcript_id AT1G26250.1
AT1G26255	chr1:009083931	0.0	C/9083931-9084149,9084324-9084476,9084534-9084991,9085154-9085238	AT1G26255.3 AT1G26255.3 CDS hypothetical protein
AT1G26255	chr1:009083931	0.0	C/9083931-9084149,9084324-9084476,9084534-9085066,9085121-9085238	AT1G26255.1 AT1G26255.1 CDS hypothetical protein
AT1G26255	chr1:009083931	0.0	C/9083931-9084149,9084324-9084539,9084660-9085238	AT1G26255.2 AT1G26255.2 CDS hypothetical protein
AT1G26255	chr1:009083931	0.0	C/9083931-9084149,9084324-9084599,9084870-9085238	AT1G26255.4 AT1G26255.4 CDS hypothetical protein
AT1G26255	chr1:009083931	0.0	C/9083931-9084157,9084908-9085012,9085175-9085238	AT1G26255.5 AT1G26255.5 CDS hypothetical protein
At1g26260	chr1:009087214	0.0	W/9087214-9087391,9087545-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.3 CDS cryptochrome-interacting basic-helix-loop-helix 5 [TAIR10] CDS gene_syn CIB5, F28B23.8, F28B23_8, cryptochrome-interacting basic-helix-loop-helix 5 gene CIB5 function Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1. go_component nucleus|GO:0005634||IEA go_process positive regulation of flower development|GO:0009911|18988809|IGI go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product cryptochrome-interacting basic-helix-loop-helix 5 note cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G26260.3p transcript_id AT1G26260.3 protein_id AT1G26260.3p transcript_id AT1G26260.3
At1g26260	chr1:009087214	0.0	W/9087214-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.1 CDS cryptochrome-interacting basic-helix-loop-helix 5 [TAIR10] CDS gene_syn CIB5, F28B23.8, F28B23_8, cryptochrome-interacting basic-helix-loop-helix 5 gene CIB5 function Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1. go_component nucleus|GO:0005634||IEA go_process positive regulation of flower development|GO:0009911|18988809|IGI go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product cryptochrome-interacting basic-helix-loop-helix 5 note cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 2014 Blast hits to 2008 proteins in 104 species: Archae - 0; Bacteria - 3; Metazoa - 32; Fungi - 24; Plants - 1947; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G26260.1p transcript_id AT1G26260.1 protein_id AT1G26260.1p transcript_id AT1G26260.1
At1g26260	chr1:009087214	0.0	W/9087214-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.2 CDS cryptochrome-interacting basic-helix-loop-helix 5 [TAIR10] CDS gene_syn CIB5, F28B23.8, F28B23_8, cryptochrome-interacting basic-helix-loop-helix 5 gene CIB5 function Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1. go_component nucleus|GO:0005634||IEA go_process positive regulation of flower development|GO:0009911|18988809|IGI go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product cryptochrome-interacting basic-helix-loop-helix 5 note cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G26260.2p transcript_id AT1G26260.2 protein_id AT1G26260.2p transcript_id AT1G26260.2
AT1G26260	chr1:009087214	0.0	W/9087214-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.4 AT1G26260.4 CDS cryptochrome-interacting basic-helix-loop-helix 5
AT1G26260	chr1:009087214	0.0	W/9087214-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.5 AT1G26260.5 CDS cryptochrome-interacting basic-helix-loop-helix 5
At1g26270	chr1:009089822	0.0	C/9089822-9091714	AT1G26270.1 CDS Phosphatidylinositol 3- and 4-kinase family protein [TAIR10] CDS gene_syn F28B23.7, F28B23_7 go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA go_component cellular_component|GO:0005575||ND go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS product Phosphatidylinositol 3- and 4-kinase family protein note Phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 7 (TAIR:AT2G03890.1); Has 671 Blast hits to 650 proteins in 184 species: Archae - 0; Bacteria - 8; Metazoa - 176; Fungi - 103; Plants - 278; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). protein_id AT1G26270.1p transcript_id AT1G26270.1 protein_id AT1G26270.1p transcript_id AT1G26270.1
At1g26300	chr1:009096023	0.0	C/9096023-9096088,9096176-9096225,9096431-9096627,9098941-9099038,9099140-9099246,9099314-9099746	AT1G26300.1 CDS BSD domain-containing protein [TAIR10] CDS gene_syn F28B23.4, F28B23_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product BSD domain-containing protein note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 242 Blast hits to 239 proteins in 42 species: Archae - 4; Bacteria - 13; Metazoa - 9; Fungi - 4; Plants - 182; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). protein_id AT1G26300.1p transcript_id AT1G26300.1 protein_id AT1G26300.1p transcript_id AT1G26300.1
At1g26290	chr1:009098051	0.0	W/9098051-9098080,9098157-9098555	AT1G26290.1 CDS hypothetical protein [TAIR10] CDS gene_syn F28B23.5, F28B23_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 126 Blast hits to 112 proteins in 36 species: Archae - 0; Bacteria - 6; Metazoa - 14; Fungi - 3; Plants - 14; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). protein_id AT1G26290.1p transcript_id AT1G26290.1 protein_id AT1G26290.1p transcript_id AT1G26290.1
At1g26300	chr1:009098937	0.0	C/9098937-9099038,9099140-9099246,9099314-9099746	AT1G26300.2 CDS BSD domain-containing protein [TAIR10] CDS gene_syn F28B23.4, F28B23_4 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product BSD domain-containing protein note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G26300.2p transcript_id AT1G26300.2 protein_id AT1G26300.2p transcript_id AT1G26300.2
AT1G26300	chr1:009098937	0.0	C/9098937-9099038,9099140-9099246,9099314-9099746	AT1G26300.3 AT1G26300.3 CDS BSD domain-containing protein
At1g26310	chr1:009100330	0.0	C/9100330-9100429,9100644-9100792,9101393-9101434,9101646-9101687,9101822-9101921,9102010-9102080,9102192-9102270,9103326-9103510	AT1G26310.1 CDS K-box region and MADS-box transcription factor family protein [TAIR10] CDS gene_syn AGAMOUS-like 10, AGL10, CAL, CAL1, CAULIFLOWER, F28B23.25, F28B23_25, MADS3 gene CAL function Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants. go_component nucleus|GO:0005634||IEA go_process positive regulation of flower development|GO:0009911|10648231|TAS go_process floral meristem determinacy|GO:0010582|20626659|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|7824951|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product K-box region and MADS-box transcription factor family protein note CAULIFLOWER (CAL); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, floral meristem determinacy; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 8035 Blast hits to 8024 proteins in 979 species: Archae - 8; Bacteria - 30; Metazoa - 829; Fungi - 313; Plants - 6634; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink). protein_id AT1G26310.1p transcript_id AT1G26310.1 protein_id AT1G26310.1p transcript_id AT1G26310.1
At1g26320	chr1:009105240	0.0	W/9105240-9105485,9105923-9106103,9106233-9106399,9106482-9106564,9106651-9107029	AT1G26320.1 CDS Zinc-binding dehydrogenase family protein [TAIR10] CDS gene_syn F28B23.3, F28B23_3 go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_function oxidoreductase activity|GO:0016491||IEA go_process response to oxidative stress|GO:0006979|7592828|IEP product Zinc-binding dehydrogenase family protein note Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1); Has 15199 Blast hits to 15179 proteins in 1781 species: Archae - 136; Bacteria - 8413; Metazoa - 848; Fungi - 1033; Plants - 583; Viruses - 0; Other Eukaryotes - 4186 (source: NCBI BLink). protein_id AT1G26320.1p transcript_id AT1G26320.1 protein_id AT1G26320.1p transcript_id AT1G26320.1
At1g26320	chr1:009105240	0.0	W/9105240-9105485,9105923-9106103,9106233-9106399,9106497-9106564,9106651-9107029	AT1G26320.2 CDS Zinc-binding dehydrogenase family protein [TAIR10] CDS gene_syn F28B23.3, F28B23_3 go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function zinc ion binding|GO:0008270||IEA go_function oxidoreductase activity|GO:0016491||IEA go_process response to oxidative stress|GO:0006979|7592828|IEP product Zinc-binding dehydrogenase family protein note Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1). protein_id AT1G26320.2p transcript_id AT1G26320.2 protein_id AT1G26320.2p transcript_id AT1G26320.2
At1g26330	chr1:009107625	0.0	W/9107625-9107738,9108186-9108293,9108377-9108508,9109099-9109605,9109737-9109851,9109969-9110289,9110401-9110832,9110937-9111784,9111877-9111962,9112048-9112266,9112386-9112514,9112698-9113042,9113216-9113331,9113423-9113520	AT1G26330.1 CDS DNA binding [TAIR10] CDS gene_syn F28B23.2, F28B23_2 go_component nucleus|GO:0005634||IEA go_function DNA binding|GO:0003677||IEA go_process biological_process|GO:0008150||ND product DNA binding note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), FY-rich, C-terminal (InterPro:IPR003889), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G26330.1p transcript_id AT1G26330.1 protein_id AT1G26330.1p transcript_id AT1G26330.1
At1g26330	chr1:009107625	0.0	W/9107625-9107742,9108102-9108140,9108214-9108293,9108377-9108508,9109099-9109605,9109737-9109851,9109969-9110289,9110401-9110832,9110937-9111784,9111877-9111962,9112048-9112266,9112386-9112514,9112698-9113042,9113216-9113331,9113423-9113520	AT1G26330.2 CDS DNA binding [TAIR10] CDS gene_syn F28B23.2, F28B23_2 go_component nucleus|GO:0005634||IEA go_function DNA binding|GO:0003677||IEA go_process biological_process|GO:0008150||ND product DNA binding note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), FY-rich, C-terminal (InterPro:IPR003889), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943). protein_id AT1G26330.2p transcript_id AT1G26330.2 protein_id AT1G26330.2p transcript_id AT1G26330.2
At1g26340	chr1:009113992	0.0	W/9113992-9114078,9114335-9114401,9114502-9114755	AT1G26340.1 CDS cytochrome B5 isoform A [TAIR10] CDS gene_syn ARABIDOPSIS CYTOCHROME B5 ISOFORM A, ATCB5-A, B5 #6, CB5-A, F28B23.1, cytochrome B5 isoform A gene CB5-A function encodes a member of the cytochromes b5 family of proteins that localizes to the outer envelope of the chloroplast. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro. go_component chloroplast outer membrane|GO:0009707|17322552|IDA go_component stromule|GO:0010319|17322552|IDA go_function heme binding|GO:0020037|17322552|ISS product cytochrome B5 isoform A note cytochrome B5 isoform A (CB5-A); CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform B (TAIR:AT2G32720.1); Has 4207 Blast hits to 4178 proteins in 465 species: Archae - 2; Bacteria - 26; Metazoa - 1058; Fungi - 1672; Plants - 799; Viruses - 3; Other Eukaryotes - 647 (source: NCBI BLink). protein_id AT1G26340.1p transcript_id AT1G26340.1 protein_id AT1G26340.1p transcript_id AT1G26340.1
At1g26350	chr1:009116010	0.0	C/9116010-9116164,9116619-9116781	AT1G26350.1 CDS hypothetical protein [TAIR10] CDS gene_syn F28B23.28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26350.1p transcript_id AT1G26350.1 protein_id AT1G26350.1p transcript_id AT1G26350.1
At1g26355	chr1:009117950	0.0	C/9117950-9118033,9118354-9118611	AT1G26355.1 CDS SPIRAL1-like1 [TAIR10] CDS gene_syn SP1L1, SPIRAL1-like1 gene SP1L1 function SPIRAL1-LIKE1 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. GUS expression was detected only in pollen; however, no endogenous transcript was found. product SPIRAL1-like1 note SPIRAL1-like1 (SP1L1); BEST Arabidopsis thaliana protein match is: SPIRAL1-like2 (TAIR:AT1G69230.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G26355.1p transcript_id AT1G26355.1 protein_id AT1G26355.1p transcript_id AT1G26355.1
At1g26360	chr1:009119021	0.0	C/9119021-9119308,9119390-9119521,9119938-9120081,9120179-9120418,9120673-9121203	AT1G26360.1 CDS methyl esterase 13 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 13, ATMES13, MES13, T1K7.26, T1K7_26, methyl esterase 13 gene MES13 function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein. go_component chloroplast|GO:0009507||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function hydrolase activity|GO:0016787||ISS product methyl esterase 13 note methyl esterase 13 (MES13); FUNCTIONS IN: hydrolase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: methyl esterase 15 (TAIR:AT1G69240.1); Has 2167 Blast hits to 2165 proteins in 544 species: Archae - 4; Bacteria - 1224; Metazoa - 16; Fungi - 61; Plants - 637; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink). protein_id AT1G26360.1p transcript_id AT1G26360.1 protein_id AT1G26360.1p transcript_id AT1G26360.1
At1g26370	chr1:009122030	0.0	C/9122030-9122213,9122323-9122457,9122544-9122743,9122834-9123065,9123239-9123424,9123544-9123704,9123808-9124011,9124128-9124545,9124649-9124865,9124964-9125044,9125131-9125180,9125283-9125368	AT1G26370.1 CDS RNA helicase family protein [TAIR10] CDS gene_syn T1K7.25, T1K7_25 go_component chloroplast|GO:0009507||IEA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_process biological_process|GO:0008150||ND go_function RNA helicase activity|GO:0003724||ISS product RNA helicase family protein note RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 9899 Blast hits to 9180 proteins in 1561 species: Archae - 2; Bacteria - 3369; Metazoa - 2309; Fungi - 1230; Plants - 848; Viruses - 465; Other Eukaryotes - 1676 (source: NCBI BLink). protein_id AT1G26370.1p transcript_id AT1G26370.1 protein_id AT1G26370.1p transcript_id AT1G26370.1
At1g26380	chr1:009126901	0.0	C/9126901-9128508	AT1G26380.1 CDS FAD-binding Berberine family protein [TAIR10] CDS gene_syn T1K7.24, T1K7_24 go_component endomembrane system|GO:0012505||IEA go_function catalytic activity|GO:0003824||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function electron carrier activity|GO:0009055||ISS product FAD-binding Berberine family protein note FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4658 Blast hits to 4519 proteins in 693 species: Archae - 70; Bacteria - 2063; Metazoa - 19; Fungi - 1653; Plants - 670; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink). protein_id AT1G26380.1p transcript_id AT1G26380.1 protein_id AT1G26380.1p transcript_id AT1G26380.1
At1g26390	chr1:009130164	0.0	C/9130164-9131756	AT1G26390.1 CDS FAD-binding Berberine family protein [TAIR10] CDS gene_syn T1K7.23, T1K7_23 go_component endomembrane system|GO:0012505||IEA go_function catalytic activity|GO:0003824||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function electron carrier activity|GO:0009055||ISS product FAD-binding Berberine family protein note FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4431 Blast hits to 4295 proteins in 635 species: Archae - 59; Bacteria - 1880; Metazoa - 8; Fungi - 1648; Plants - 659; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). protein_id AT1G26390.1p transcript_id AT1G26390.1 protein_id AT1G26390.1p transcript_id AT1G26390.1
At1g26400	chr1:009133291	0.0	C/9133291-9134874	AT1G26400.1 CDS FAD-binding Berberine family protein [TAIR10] CDS gene_syn T1K7.22, T1K7_22 go_component endomembrane system|GO:0012505||IEA go_function catalytic activity|GO:0003824||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function electron carrier activity|GO:0009055||ISS product FAD-binding Berberine family protein note FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4296 Blast hits to 4165 proteins in 631 species: Archae - 49; Bacteria - 1840; Metazoa - 8; Fungi - 1622; Plants - 655; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). protein_id AT1G26400.1p transcript_id AT1G26400.1 protein_id AT1G26400.1p transcript_id AT1G26400.1
At1g26410	chr1:009138774	0.0	C/9138774-9140432	AT1G26410.1 CDS FAD-binding Berberine family protein [TAIR10] CDS gene_syn T1K7.21, T1K7_21 go_function catalytic activity|GO:0003824||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_component cellular_component|GO:0005575||ND go_function electron carrier activity|GO:0009055||ISS product FAD-binding Berberine family protein note FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4489 Blast hits to 4292 proteins in 637 species: Archae - 40; Bacteria - 1906; Metazoa - 5; Fungi - 1692; Plants - 699; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). protein_id AT1G26410.1p transcript_id AT1G26410.1 protein_id AT1G26410.1p transcript_id AT1G26410.1
At1g26420	chr1:009141715	0.0	C/9141715-9143304	AT1G26420.1 CDS FAD-binding Berberine family protein [TAIR10] CDS gene_syn T1K7.20, T1K7_20 go_component endomembrane system|GO:0012505||IEA go_function catalytic activity|GO:0003824||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function electron carrier activity|GO:0009055||ISS product FAD-binding Berberine family protein note FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26380.1); Has 4265 Blast hits to 4053 proteins in 603 species: Archae - 34; Bacteria - 1861; Metazoa - 0; Fungi - 1585; Plants - 662; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). protein_id AT1G26420.1p transcript_id AT1G26420.1 protein_id AT1G26420.1p transcript_id AT1G26420.1
At1g26430	chr1:009143810	0.0	W/9143810-9143883	AT1G26430.1 [TAIR10] tRNA gene_syn 51948.TRNA-ASN-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Asn (anticodon: GTT) transcript_id AT1G26430.1
At1g26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144918,9144995-9145195,9145301-9145340,9145413-9145673	AT1G26440.1 CDS ureide permease 5 [TAIR10] CDS gene_syn ATUPS5, T1K7.19, T1K7_19, UPS5, ureide permease 5 gene UPS5 function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine go_component endomembrane system|GO:0012505||IEA product ureide permease 5 note ureide permease 5 (UPS5); LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ureide permease 2 (TAIR:AT2G03530.2); Has 249 Blast hits to 246 proteins in 69 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). protein_id AT1G26440.1p transcript_id AT1G26440.1 protein_id AT1G26440.1p transcript_id AT1G26440.1
At1g26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145114,9145301-9145340,9145413-9145673	AT1G26440.4 CDS ureide permease 5 [TAIR10] CDS gene_syn ATUPS5, T1K7.19, T1K7_19, UPS5, ureide permease 5 gene UPS5 function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine go_component endomembrane system|GO:0012505||IEA product ureide permease 5 note ureide permease 5 (UPS5); LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ureide permease 2 (TAIR:AT2G03530.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G26440.4p transcript_id AT1G26440.4 protein_id AT1G26440.4p transcript_id AT1G26440.4
AT1G26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145195,9145301-9145340,9145413-9145673	AT1G26440.6 AT1G26440.6 CDS ureide permease 5
AT1G26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145195,9145301-9145382	AT1G26440.5 AT1G26440.5 CDS ureide permease 5
At1g26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145340,9145413-9145673	AT1G26440.2 CDS ureide permease 5 [TAIR10] CDS gene_syn ATUPS5, T1K7.19, T1K7_19, UPS5, ureide permease 5 gene UPS5 function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine go_component endomembrane system|GO:0012505||IEA go_process allantoin transport|GO:0015720|16738859|IGI go_process uracil transport|GO:0015857|16738859|IGI go_process xanthine transport|GO:0042906|16738859|IGI go_function allantoin uptake transmembrane transporter activity|GO:0005274|16738859|IDA go_function uracil transmembrane transporter activity|GO:0015210|16738859|IDA go_function xanthine transmembrane transporter activity|GO:0042907|16738859|IDA product ureide permease 5 note ureide permease 5 (UPS5); FUNCTIONS IN: xanthine transmembrane transporter activity, uracil transmembrane transporter activity, allantoin uptake transmembrane transporter activity; INVOLVED IN: xanthine transport, uracil transport, allantoin transport; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ureide permease 2 (TAIR:AT2G03530.2); Has 265 Blast hits to 257 proteins in 70 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G26440.2p transcript_id AT1G26440.2 protein_id AT1G26440.2p transcript_id AT1G26440.2
At1g26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145340,9145413-9145673	AT1G26440.3 CDS ureide permease 5 [TAIR10] CDS gene_syn ATUPS5, T1K7.19, T1K7_19, UPS5, ureide permease 5 gene UPS5 function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine go_component endomembrane system|GO:0012505||IEA go_process allantoin transport|GO:0015720|16738859|IGI go_process uracil transport|GO:0015857|16738859|IGI go_process xanthine transport|GO:0042906|16738859|IGI go_function allantoin uptake transmembrane transporter activity|GO:0005274|16738859|IDA go_function uracil transmembrane transporter activity|GO:0015210|16738859|IDA go_function xanthine transmembrane transporter activity|GO:0042907|16738859|IDA product ureide permease 5 note ureide permease 5 (UPS5); FUNCTIONS IN: xanthine transmembrane transporter activity, uracil transmembrane transporter activity, allantoin uptake transmembrane transporter activity; INVOLVED IN: xanthine transport, uracil transport, allantoin transport; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ureide permease 2 (TAIR:AT2G03530.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G26440.3p transcript_id AT1G26440.3 protein_id AT1G26440.3p transcript_id AT1G26440.3
AT1G26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145382	AT1G26440.7 AT1G26440.7 CDS ureide permease 5
AT1G26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145382	AT1G26440.8 AT1G26440.8 CDS ureide permease 5
At1g26450	chr1:009149003	0.0	C/9149003-9149276,9149525-9149552,9149643-9149882,9150012-9150063	AT1G26450.1 CDS Carbohydrate-binding X8 domain superfamily protein [TAIR10] CDS gene_syn T1K7.18, T1K7_18 go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Carbohydrate-binding X8 domain superfamily protein note Carbohydrate-binding X8 domain superfamily protein; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: plasmodesmata callose-binding protein 3 (TAIR:AT1G18650.1); Has 11073 Blast hits to 3511 proteins in 410 species: Archae - 18; Bacteria - 672; Metazoa - 2248; Fungi - 1003; Plants - 1218; Viruses - 195; Other Eukaryotes - 5719 (source: NCBI BLink). protein_id AT1G26450.1p transcript_id AT1G26450.1 protein_id AT1G26450.1p transcript_id AT1G26450.1
At1g26460	chr1:009151816	0.0	W/9151816-9152462,9152671-9152893,9152982-9153464,9153694-9153900,9153990-9154127,9154213-9154407	AT1G26460.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T1K7.17, T1K7_17 go_component mitochondrion|GO:0005739|14671022|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 8798 Blast hits to 4372 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 106; Plants - 8403; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink). protein_id AT1G26460.1p transcript_id AT1G26460.1 protein_id AT1G26460.1p transcript_id AT1G26460.1
At1g26470	chr1:009155134	0.0	W/9155134-9155253,9155340-9155412,9155605-9155656,9155755-9155824,9155950-9156036	AT1G26470.1 CDS chromatin modification-like protein [TAIR10] CDS gene_syn T1K7.16, T1K7_16 go_component nucleus|GO:0005634||IEA go_component H4/H2A histone acetyltransferase complex|GO:0043189||IEA go_process regulation of transcription|GO:0045449||IEA go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G26470.1p transcript_id AT1G26470.1 protein_id AT1G26470.1p transcript_id AT1G26470.1
At1g26480	chr1:009156573	0.0	C/9156573-9156578,9156659-9156723,9156803-9156951,9157035-9157144,9157221-9157308,9157383-9157689,9157764-9157845	AT1G26480.1 CDS general regulatory factor 12 [TAIR10] CDS gene_syn GF14 IOTA, GRF12, T1K7.15, T1K7_15, general regulatory factor 12 gene GRF12 function 14-3-3 protein GF14iota (grf12) go_component cellular_component|GO:0005575||ND go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS product general regulatory factor 12 note general regulatory factor 12 (GRF12); FUNCTIONS IN: protein phosphorylated amino acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 9 (TAIR:AT2G42590.3); Has 2719 Blast hits to 2708 proteins in 388 species: Archae - 0; Bacteria - 8; Metazoa - 1259; Fungi - 334; Plants - 765; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink). protein_id AT1G26480.1p transcript_id AT1G26480.1 protein_id AT1G26480.1p transcript_id AT1G26480.1
At1g26490	chr1:009158183	0.0	W/9158183-9158255	AT1G26490.1 [TAIR10] tRNA gene_syn 51948.TRNA-ALA-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ala (anticodon: TGC) transcript_id AT1G26490.1
At1g26500	chr1:009158380	0.0	W/9158380-9159897	AT1G26500.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn T1K7.14, T1K7_14 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62470.1); Has 19147 Blast hits to 7603 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 126; Plants - 18834; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink). protein_id AT1G26500.1p transcript_id AT1G26500.1 protein_id AT1G26500.1p transcript_id AT1G26500.1
At1g26510	chr1:009159851	0.0	C/9159851-9161044	AT1G26510.1 CDS F-box associated ubiquitination effector family protein [TAIR10] CDS gene_syn T1K7.13, T1K7_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box associated ubiquitination effector family protein note F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G26515.1); Has 2064 Blast hits to 1145 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2064; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26510.1p transcript_id AT1G26510.1 protein_id AT1G26510.1p transcript_id AT1G26510.1
At1g26515	chr1:009161810	0.0	C/9161810-9162910	AT1G26515.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G26510.1). protein_id AT1G26515.1p transcript_id AT1G26515.1 protein_id AT1G26515.1p transcript_id AT1G26515.1
At1g26520	chr1:009163448	0.0	C/9163448-9163503,9163586-9163667,9163748-9163858,9163945-9164064,9164161-9164322,9164405-9164494,9164769-9164883,9165125-9165342,9165424-9165594	AT1G26520.1 CDS Cobalamin biosynthesis CobW-like protein [TAIR10] CDS gene_syn T1K7.11, T1K7_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Cobalamin biosynthesis CobW-like protein note Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: Cobalamin biosynthesis CobW-like protein (TAIR:AT1G15730.1); Has 8517 Blast hits to 8427 proteins in 1716 species: Archae - 88; Bacteria - 6047; Metazoa - 151; Fungi - 280; Plants - 232; Viruses - 0; Other Eukaryotes - 1719 (source: NCBI BLink). protein_id AT1G26520.1p transcript_id AT1G26520.1 protein_id AT1G26520.1p transcript_id AT1G26520.1
At1g26530	chr1:009165890	0.0	W/9165890-9165960,9166030-9166089,9166194-9166299,9166476-9166516,9166601-9166621,9166763-9166850,9166965-9167021,9167107-9167185,9167285-9167298	AT1G26530.1 CDS PIN domain-like family protein [TAIR10] CDS gene_syn T1K7.10, T1K7_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product PIN domain-like family protein note PIN domain-like family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT2G46230.1); Has 517 Blast hits to 517 proteins in 211 species: Archae - 4; Bacteria - 0; Metazoa - 206; Fungi - 155; Plants - 64; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). protein_id AT1G26530.1p transcript_id AT1G26530.1 protein_id AT1G26530.1p transcript_id AT1G26530.1
At1g26540	chr1:009167783	0.0	C/9167783-9168435,9168559-9168666,9168755-9168836,9168937-9169064,9169161-9169248,9169330-9169494,9169578-9170000,9170355-9170795	AT1G26540.1 CDS Agenet domain-containing protein [TAIR10] CDS gene_syn T1K7.9, T1K7_9 go_component vacuole|GO:0005773|15539469|IDA go_function RNA binding|GO:0003723||IEA go_process biological_process|GO:0008150||ND product Agenet domain-containing protein note Agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 924 Blast hits to 776 proteins in 124 species: Archae - 0; Bacteria - 33; Metazoa - 257; Fungi - 37; Plants - 429; Viruses - 3; Other Eukaryotes - 165 (source: NCBI BLink). protein_id AT1G26540.1p transcript_id AT1G26540.1 protein_id AT1G26540.1p transcript_id AT1G26540.1
At1g26550	chr1:009171800	0.0	W/9171800-9171932,9172081-9172190,9172441-9172583,9172674-9172716	AT1G26550.1 CDS FKBP-like peptidyl-prolyl cis-trans isomerase family protein [TAIR10] CDS gene_syn T1K7.8, T1K7_8 go_function isomerase activity|GO:0016853||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function isomerase activity|GO:0016853||ISS product FKBP-like peptidyl-prolyl cis-trans isomerase family protein note FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (TAIR:AT2G18040.1); Has 6979 Blast hits to 6709 proteins in 1619 species: Archae - 14; Bacteria - 5328; Metazoa - 276; Fungi - 185; Plants - 213; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink). protein_id AT1G26550.1p transcript_id AT1G26550.1 protein_id AT1G26550.1p transcript_id AT1G26550.1
At1g26558	chr1:009175611	0.0	W/9175611-9175694,9176083-9176155,9176275-9176339,9176760-9176837,9177374-9177556	AT1G26558.1 [TAIR10] ncRNA function Unknown gene go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G26558.1
At1g26558	chr1:009175642	0.0	W/9175642-9175694,9176083-9176137,9176275-9177598	AT1G26558.2 [TAIR10] ncRNA function Unknown gene go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G26558.2
At1g26560	chr1:009178513	0.0	W/9178513-9178665,9179410-9179535,9179636-9179711,9179838-9179909,9180083-9180170,9180278-9180533,9180613-9180728,9180811-9181034,9181121-9181152,9181260-9181362,9181440-9181726	AT1G26560.1 CDS beta glucosidase 40 [TAIR10] CDS gene_syn BGLU40, T1K7.7, T1K7_7, beta glucosidase 40 gene BGLU40 go_component chloroplast|GO:0009507|15028209|IDA go_component apoplast|GO:0048046|18538804|IDA go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product beta glucosidase 40 note beta glucosidase 40 (BGLU40); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 41 (TAIR:AT5G54570.1); Has 11482 Blast hits to 11079 proteins in 1478 species: Archae - 142; Bacteria - 7937; Metazoa - 716; Fungi - 201; Plants - 1474; Viruses - 0; Other Eukaryotes - 1012 (source: NCBI BLink). protein_id AT1G26560.1p transcript_id AT1G26560.1 protein_id AT1G26560.1p transcript_id AT1G26560.1
At1g26570	chr1:009182801	0.0	W/9182801-9184246	AT1G26570.1 CDS UDP-glucose dehydrogenase 1 [TAIR10] CDS gene_syn ATUGD1, T1K7.6, T1K7_6, UDP-GLUCOSE DEHYDROGENASE 1, UDP-glucose dehydrogenase 1, UGD1 gene UGD1 go_component endomembrane system|GO:0012505||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_function catalytic activity|GO:0003824||IEA go_function binding|GO:0005488||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA go_function coenzyme binding|GO:0050662||IEA go_function NAD or NADH binding|GO:0051287||IEA go_function UDP-glucose 6-dehydrogenase activity|GO:0003979||ISS product UDP-glucose dehydrogenase 1 note UDP-glucose dehydrogenase 1 (UGD1); FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT3G29360.2); Has 13586 Blast hits to 13559 proteins in 2171 species: Archae - 313; Bacteria - 7133; Metazoa - 213; Fungi - 101; Plants - 213; Viruses - 14; Other Eukaryotes - 5599 (source: NCBI BLink). protein_id AT1G26570.1p transcript_id AT1G26570.1 protein_id AT1G26570.1p transcript_id AT1G26570.1
At1g26580	chr1:009185620	0.0	W/9185620-9185764,9185877-9187213	AT1G26580.1 CDS ELM2 domain protein [TAIR10] CDS gene_syn T1K7.5, T1K7_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26580.1p transcript_id AT1G26580.1 protein_id AT1G26580.1p transcript_id AT1G26580.1
AT1G26580	chr1:009185620	0.0	W/9185620-9185764,9185877-9187213	AT1G26580.2 AT1G26580.2 CDS ELM2 domain protein
AT1G26580	chr1:009185930	0.0	W/9185930-9187213	AT1G26580.3 AT1G26580.3 CDS ELM2 domain protein
AT1G26590	chr1:009189447	0.0	W/9189447-9189484,9189608-9190709	AT1G26590.2 AT1G26590.2 CDS C2H2-like zinc finger protein
At1g26590	chr1:009189624	0.0	W/9189624-9190709	AT1G26590.1 CDS C2H2-like zinc finger protein [TAIR10] CDS gene_syn T1K7.4, T1K7_4 go_component intracellular|GO:0005622||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-like zinc finger protein note C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G26610.1); Has 9932 Blast hits to 6385 proteins in 211 species: Archae - 0; Bacteria - 218; Metazoa - 8275; Fungi - 157; Plants - 592; Viruses - 3; Other Eukaryotes - 687 (source: NCBI BLink). protein_id AT1G26590.1p transcript_id AT1G26590.1 protein_id AT1G26590.1p transcript_id AT1G26590.1
AT1G26590	chr1:009189624	0.0	W/9189624-9190709	AT1G26590.3 AT1G26590.3 CDS C2H2-like zinc finger protein
AT1G26590	chr1:009189624	0.0	W/9189624-9190709	AT1G26590.4 AT1G26590.4 CDS C2H2-like zinc finger protein
AT1G26600	chr1:009191549	0.0	W/9191549-9192046	AT1G26600.2 AT1G26600.2 CDS CLAVATA3/ESR-RELATED 9
At1g26600	chr1:009191684	0.0	W/9191684-9192046	AT1G26600.1 CDS CLAVATA3/ESR-RELATED 9 [TAIR10] CDS gene_syn CLAVATA3/ESR-RELATED 9, CLE9, T1K7.3, T1K7_3 gene CLE9 function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo. go_component apoplast|GO:0048046|11457943|RCA go_process signal transduction|GO:0007165||ISS go_function receptor binding|GO:0005102||ISS product CLAVATA3/ESR-RELATED 9 note CLAVATA3/ESR-RELATED 9 (CLE9); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 10 (TAIR:AT1G69320.1); Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26600.1p transcript_id AT1G26600.1 protein_id AT1G26600.1p transcript_id AT1G26600.1
At1g26610	chr1:009193735	0.0	W/9193735-9195102	AT1G26610.1 CDS C2H2-like zinc finger protein [TAIR10] CDS gene_syn T1K7.2, T1K7_2 go_component intracellular|GO:0005622||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-like zinc finger protein note C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G26590.1); Has 2336 Blast hits to 2002 proteins in 123 species: Archae - 0; Bacteria - 1; Metazoa - 1559; Fungi - 9; Plants - 678; Viruses - 6; Other Eukaryotes - 83 (source: NCBI BLink). protein_id AT1G26610.1p transcript_id AT1G26610.1 protein_id AT1G26610.1p transcript_id AT1G26610.1
At1g26620	chr1:009195838	0.0	C/9195838-9197756,9197953-9198541,9198624-9198719	AT1G26620.1 CDS T-box transcription factor, putative (DUF863) [TAIR10] CDS gene_syn T1K7.1, T1K7_1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant protein of unknown function (DUF863) note Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 270 Blast hits to 240 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G26620.1p transcript_id AT1G26620.1 protein_id AT1G26620.1p transcript_id AT1G26620.1
At1g26630	chr1:009205968	0.0	W/9205968-9206087,9206452-9206574,9206672-9206728,9206817-9206891,9206972-9207013	AT1G26630.2 CDS Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [TAIR10] CDS gene_syn ATELF5A-2, ELF5A-2, EUKARYOTIC ELONGATION FACTOR 5A-2, FBR12, FUMONISIN B1-RESISTANT12, T24P13.1, T24P13_1 gene FBR12 function Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. go_component nucleus|GO:0005634|18633122|IDA go_process translational initiation|GO:0006413|17513484|IMP go_process translational initiation|GO:0006413||ISS go_process response to wounding|GO:0009611|18633122|IEP go_process programmed cell death|GO:0012501|18633122|IMP go_process defense response to bacterium|GO:0042742|18633122|IMP go_function translation initiation factor activity|GO:0003743|17513484|IMP go_function translation initiation factor activity|GO:0003743||ISS product Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein note FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, defense response to bacterium, response to wounding, programmed cell death; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1298 Blast hits to 1297 proteins in 403 species: Archae - 255; Bacteria - 0; Metazoa - 362; Fungi - 216; Plants - 256; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink). protein_id AT1G26630.2p transcript_id AT1G26630.2 protein_id AT1G26630.2p transcript_id AT1G26630.2
At1g26630	chr1:009205968	0.0	W/9205968-9206087,9206452-9206574,9206672-9206728,9206817-9206891,9206994-9207098	AT1G26630.1 CDS Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [TAIR10] CDS gene_syn ATELF5A-2, ELF5A-2, EUKARYOTIC ELONGATION FACTOR 5A-2, FBR12, FUMONISIN B1-RESISTANT12, T24P13.1, T24P13_1 gene FBR12 function Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. go_process response to wounding|GO:0009611|18633122|IEP go_process response to bacterium|GO:0009617|18633122|IEP go_process host programmed cell death induced by symbiont|GO:0034050|18633122|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component nucleus|GO:0005634|18633122|IDA go_process translational initiation|GO:0006413|17513484|IMP go_process translational initiation|GO:0006413||ISS go_process programmed cell death|GO:0012501|18633122|IMP go_process defense response to bacterium|GO:0042742|18633122|IMP go_function translation initiation factor activity|GO:0003743|17513484|IMP go_function translation initiation factor activity|GO:0003743||ISS product Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein note FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1331 Blast hits to 1330 proteins in 409 species: Archae - 256; Bacteria - 0; Metazoa - 365; Fungi - 242; Plants - 261; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink). protein_id AT1G26630.1p transcript_id AT1G26630.1 protein_id AT1G26630.1p transcript_id AT1G26630.1
At1g26640	chr1:009207620	0.0	C/9207620-9207715,9207817-9207920,9208017-9208079,9208154-9208226,9208321-9208398,9208485-9208520,9208609-9208665,9208750-9208811,9208896-9208938,9209019-9209116,9209274-9209504,9209709-9209766	AT1G26640.1 CDS Amino acid kinase family protein [TAIR10] CDS gene_syn T24P13.2, T24P13_2 go_process cellular amino acid biosynthetic process|GO:0008652||IEA go_component cellular_component|GO:0005575||ND go_function molecular_function|GO:0003674||ND product Amino acid kinase family protein note Amino acid kinase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular amino acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048); Has 592 Blast hits to 592 proteins in 236 species: Archae - 208; Bacteria - 227; Metazoa - 7; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). protein_id AT1G26640.1p transcript_id AT1G26640.1 protein_id AT1G26640.1p transcript_id AT1G26640.1
At1g26650	chr1:009210335	0.0	W/9210335-9211342	AT1G26650.1 CDS Son of sevenless protein [TAIR10] CDS gene_syn T24P13.3, T24P13_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 205 Blast hits to 204 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26650.1p transcript_id AT1G26650.1 protein_id AT1G26650.1p transcript_id AT1G26650.1
At1g26660	chr1:009212298	0.0	W/9212298-9212389,9212505-9212609,9212841-9212942,9213220-9213327,9213482-9213536,9213694-9213765	AT1G26660.2 CDS Prefoldin chaperone subunit family protein [TAIR10] CDS gene_syn T24P13.26 go_component prefoldin complex|GO:0016272||IEA go_process protein folding|GO:0006457||IEA go_function unfolded protein binding|GO:0051082||IEA go_component prefoldin complex|GO:0016272||ISS go_process protein folding|GO:0006457||ISS product Prefoldin chaperone subunit family protein note Prefoldin chaperone subunit family protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053). protein_id AT1G26660.2p transcript_id AT1G26660.2 protein_id AT1G26660.2p transcript_id AT1G26660.2
At1g26660	chr1:009212298	0.0	W/9212298-9212389,9212546-9212575,9212841-9212942,9213220-9213327,9213482-9213536,9213694-9213765	AT1G26660.1 CDS Prefoldin chaperone subunit family protein [TAIR10] CDS gene_syn T24P13.26 go_component prefoldin complex|GO:0016272||IEA go_process protein folding|GO:0006457||IEA go_function unfolded protein binding|GO:0051082||IEA go_component prefoldin complex|GO:0016272||ISS go_process protein folding|GO:0006457||ISS product Prefoldin chaperone subunit family protein note Prefoldin chaperone subunit family protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053); Has 337 Blast hits to 337 proteins in 114 species: Archae - 14; Bacteria - 2; Metazoa - 207; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). protein_id AT1G26660.1p transcript_id AT1G26660.1 protein_id AT1G26660.1p transcript_id AT1G26660.1
At1g26665	chr1:009214510	0.0	W/9214510-9214733,9214823-9214903,9214991-9215093,9215177-9215266,9215355-9215426	AT1G26665.1 CDS Mediator complex, subunit Med10 [TAIR10] CDS go_component mediator complex|GO:0016592||IEA go_process regulation of transcription from RNA polymerase II promoter|GO:0006357||IEA go_function RNA polymerase II transcription mediator activity|GO:0016455||IEA product Mediator complex, subunit Med10 note Mediator complex, subunit Med10; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med10 (InterPro:IPR019145); BEST Arabidopsis thaliana protein match is: Mediator complex, subunit Med10 (TAIR:AT5G41910.1); Has 312 Blast hits to 312 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 119; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G26665.1p transcript_id AT1G26665.1 protein_id AT1G26665.1p transcript_id AT1G26665.1
At1g26665	chr1:009214510	0.0	W/9214510-9214733,9214823-9214903,9214991-9215093,9215177-9215270,9215359-9215426	AT1G26665.2 CDS Mediator complex, subunit Med10 [TAIR10] CDS go_component mediator complex|GO:0016592||IEA go_process regulation of transcription from RNA polymerase II promoter|GO:0006357||IEA go_function RNA polymerase II transcription mediator activity|GO:0016455||IEA product Mediator complex, subunit Med10 note Mediator complex, subunit Med10; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med10 (InterPro:IPR019145); BEST Arabidopsis thaliana protein match is: Mediator complex, subunit Med10 (TAIR:AT5G41910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G26665.2p transcript_id AT1G26665.2 protein_id AT1G26665.2p transcript_id AT1G26665.2
At1g26670	chr1:009216103	0.0	W/9216103-9216199,9216860-9216918,9217008-9217196,9217373-9217543,9217641-9217793	AT1G26670.1 CDS Vesicle transport v-SNARE family protein [TAIR10] CDS gene_syn ATVTI12, T24P13.5, T24P13_5, VESICAL TRANSPORT V-SNARE 12, VTI12, VTI1B gene VTI1B function member of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles. go_component late endosome|GO:0005770|11115874|TAS go_component trans-Golgi network|GO:0005802|11115874|TAS go_component plasma membrane|GO:0005886|15797025|IDA go_process protein targeting to vacuole|GO:0006623|17360696|IMP go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS go_process cellular membrane fusion|GO:0006944|10831610|IPI go_process intracellular transport|GO:0046907|15797025|TAS go_function SNARE binding|GO:0000149|11115874|TAS go_function receptor activity|GO:0004872|11115874|TAS go_function soluble NSF attachment protein activity|GO:0005483|15797025|TAS product Vesicle transport v-SNARE family protein note VTI1B; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1); Has 841 Blast hits to 839 proteins in 213 species: Archae - 2; Bacteria - 11; Metazoa - 288; Fungi - 144; Plants - 215; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). protein_id AT1G26670.1p transcript_id AT1G26670.1 protein_id AT1G26670.1p transcript_id AT1G26670.1
AT1G26680	chr1:009219552	0.0	W/9219552-9219632,9219713-9220019,9220092-9220207,9220294-9220635,9220740-9221127,9221209-9221327,9221505-9221925,9222007-9222125,9222205-9222537,9222657-9223154,9223228-9223482	AT1G26680.4 AT1G26680.4 CDS transcriptional factor B3 family protein
At1g26680	chr1:009219552	0.0	W/9219552-9219632,9219713-9220019,9220092-9220207,9220294-9220635,9220740-9221127,9221209-9221327,9221505-9221925,9222007-9222125,9222205-9222537,9222657-9223193	AT1G26680.1 CDS transcriptional factor B3 family protein [TAIR10] CDS gene_syn T24P13.6, T24P13_6 go_component chloroplast|GO:0009507|18431481|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product transcriptional factor B3 family protein note transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: ovule, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 880 Blast hits to 315 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 864; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G26680.1p transcript_id AT1G26680.1 protein_id AT1G26680.1p transcript_id AT1G26680.1
AT1G26680	chr1:009219552	0.0	W/9219552-9219632,9219713-9220019,9220092-9220207,9220294-9220635,9220740-9221127,9222007-9222125,9222205-9222537,9222657-9223154,9223228-9223482	AT1G26680.5 AT1G26680.5 CDS transcriptional factor B3 family protein
AT1G26680	chr1:009219552	0.0	W/9219552-9219632,9219713-9220019,9220092-9220207,9220294-9220635,9220740-9221127,9222007-9222125,9222205-9222537,9222657-9223193	AT1G26680.6 AT1G26680.6 CDS transcriptional factor B3 family protein
AT1G26680	chr1:009219552	0.0	W/9219552-9219632,9219713-9220019,9220092-9220207,9220294-9220635,9221505-9221925,9222007-9222125,9222205-9222537,9222657-9223154,9223228-9223482	AT1G26680.3 AT1G26680.3 CDS transcriptional factor B3 family protein
AT1G26680	chr1:009219671	0.0	W/9219671-9220019,9220092-9220207,9220294-9220635,9221505-9221925,9222007-9222125,9222205-9222537,9222657-9223154,9223228-9223482	AT1G26680.2 AT1G26680.2 CDS transcriptional factor B3 family protein
At1g26690	chr1:009224299	0.0	C/9224299-9224443,9224570-9224646,9225180-9225389,9225470-9225682	AT1G26690.1 CDS emp24/gp25L/p24 family/GOLD family protein [TAIR10] CDS gene_syn T24P13.7, T24P13_7 go_component endomembrane system|GO:0012505||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_component membrane|GO:0016020||ISS go_process intracellular protein transport|GO:0006886||ISS go_function protein transmembrane transporter activity|GO:0008320||ISS product emp24/gp25L/p24 family/GOLD family protein note emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G69460.1); Has 1567 Blast hits to 1565 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 690; Fungi - 472; Plants - 246; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink). protein_id AT1G26690.1p transcript_id AT1G26690.1 protein_id AT1G26690.1p transcript_id AT1G26690.1
At1g26700	chr1:009228300	0.0	W/9228300-9228428,9228624-9228681,9228776-9229014,9229138-9229254,9229437-9229497,9229754-9229848,9230051-9230125,9230517-9230602,9230815-9230864,9230984-9231024,9231136-9231306,9231395-9231430,9231552-9231619,9231704-9231764,9231860-9232237	AT1G26700.1 CDS Seven transmembrane MLO family protein [TAIR10] CDS gene_syn ATMLO14, MILDEW RESISTANCE LOCUS O 14, MLO14, T24P13.8, T24P13_8 gene MLO14 function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). go_component integral to membrane|GO:0016021||IEA go_process cell death|GO:0008219||IEA go_component plasma membrane|GO:0005886||ISS go_process defense response|GO:0006952||ISS go_process cell death|GO:0008219||ISS go_function calmodulin binding|GO:0005516||ISS product Seven transmembrane MLO family protein note MILDEW RESISTANCE LOCUS O 14 (MLO14); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, F mature embryo stage, 4 leaf senescence stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT5G53760.2); Has 532 Blast hits to 521 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 523; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G26700.1p transcript_id AT1G26700.1 protein_id AT1G26700.1p transcript_id AT1G26700.1
AT1G26700	chr1:009228300	0.0	W/9228300-9228428,9228624-9228681,9228776-9229014,9229138-9229254,9229437-9229497,9229754-9229848,9230051-9230125,9230517-9230602,9230815-9230864,9230984-9231024,9231136-9231306,9231395-9231430,9231552-9231619,9231704-9231764,9231860-9232237	AT1G26700.2 AT1G26700.2 CDS Seven transmembrane MLO family protein
At1g26710	chr1:009232620	0.0	C/9232620-9233126	AT1G26710.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T24P13.9, T24P13_9 go_component mitochondrion|GO:0005739|14671022|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26720.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26710.1p transcript_id AT1G26710.1 protein_id AT1G26710.1p transcript_id AT1G26710.1
At1g26720	chr1:009234303	0.0	C/9234303-9234812	AT1G26720.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T24P13.10, T24P13_10 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26710.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26720.1p transcript_id AT1G26720.1 protein_id AT1G26720.1p transcript_id AT1G26720.1
At1g26730	chr1:009241435	0.0	W/9241435-9241963,9242044-9242323,9242412-9242460,9242546-9242617,9242705-9242834,9242931-9243051,9243147-9243405,9243495-9243599,9243681-9243725,9243813-9244238,9244326-9244462,9244551-9244650	AT1G26730.1 CDS EXS (ERD1/XPR1/SYG1) family protein [TAIR10] CDS gene_syn T24P13.11, T24P13_11 go_component plasma membrane|GO:0005886|17317660|IDA go_component integral to membrane|GO:0016021||ISS product EXS (ERD1/XPR1/SYG1) family protein note EXS (ERD1/XPR1/SYG1) family protein; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G35350.1); Has 1169 Blast hits to 1113 proteins in 206 species: Archae - 0; Bacteria - 6; Metazoa - 255; Fungi - 426; Plants - 338; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). protein_id AT1G26730.1p transcript_id AT1G26730.1 protein_id AT1G26730.1p transcript_id AT1G26730.1
AT1G26730	chr1:009241435	0.0	W/9241435-9241963,9242044-9242323,9242412-9242460,9242546-9242617,9242705-9242834,9242931-9243051,9243147-9243405,9243495-9243599,9243681-9243725,9243813-9244325	AT1G26730.2 AT1G26730.2 CDS EXS (ERD1/XPR1/SYG1) family protein
At1g26740	chr1:009245280	0.0	C/9245280-9245349,9245811-9245884,9246295-9246555	AT1G26740.1 CDS Ribosomal L32p protein family [TAIR10] CDS gene_syn T24P13.27 go_component large ribosomal subunit|GO:0015934||IEA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA product Ribosomal L32p protein family note Ribosomal L32p protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32p (InterPro:IPR002677); BEST Arabidopsis thaliana protein match is: Ribosomal L32p protein family (TAIR:AT1G69485.1); Has 123 Blast hits to 123 proteins in 51 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 21; Plants - 49; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G26740.1p transcript_id AT1G26740.1 protein_id AT1G26740.1p transcript_id AT1G26740.1
At1g26750	chr1:009246857	0.0	W/9246857-9246951,9247163-9247285,9247537-9247639,9247787-9248053	AT1G26750.1 CDS hypothetical protein [TAIR10] CDS gene_syn T24P13.13, T24P13_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26750.1p transcript_id AT1G26750.1 protein_id AT1G26750.1p transcript_id AT1G26750.1
At1g26760	chr1:009248304	0.0	C/9248304-9249941	AT1G26760.1 CDS SET domain protein 35 [TAIR10] CDS gene_syn ATXR1, SDG35, SET domain protein 35, T24P13.14, T24P13_14 gene SDG35 go_function binding|GO:0005488||IEA go_process biological_process|GO:0008150||ND product SET domain protein 35 note SET domain protein 35 (SDG35); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: SET domain group 37 (TAIR:AT2G17900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G26760.1p transcript_id AT1G26760.1 protein_id AT1G26760.1p transcript_id AT1G26760.1
At1g26761	chr1:009250269	0.0	C/9250269-9251603	AT1G26761.1 CDS Arabinanase/levansucrase/invertase [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Arabinanase/levansucrase/invertase note Arabinanase/levansucrase/invertase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G26761.1p transcript_id AT1G26761.1 protein_id AT1G26761.1p transcript_id AT1G26761.1
At1g26762	chr1:009253729	0.0	W/9253729-9254142	AT1G26762.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26762.1p transcript_id AT1G26762.1 protein_id AT1G26762.1p transcript_id AT1G26762.1
At1g26770	chr1:009259775	0.0	W/9259775-9259934,9260011-9260323,9260486-9260792	AT1G26770.2 CDS expansin A10 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA EXPANSIN 10, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, AT-EXP10, ATEXP10, ATEXPA10, ATHEXP ALPHA 1.1, EXP10, EXPA10, EXPANSIN 10, T24P13.15, T24P13_15, expansin A10 gene EXPA10 function Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. go_component plant-type cell wall|GO:0009505|10931949|TAS go_process syncytium formation|GO:0006949|16942607|IEP go_process unidimensional cell growth|GO:0009826|11641069|NAS go_process unidimensional cell growth|GO:0009826||ISS go_process plant-type cell wall loosening|GO:0009828|10931949|IMP go_process plant-type cell wall loosening|GO:0009828|11641069|NAS go_process plant-type cell wall loosening|GO:0009828||ISS go_process plant-type cell wall modification involved in multidimensional cell growth|GO:0009831||ISS go_function structural constituent of cell wall|GO:0005199|10931949|TAS product expansin A10 note expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G26770.2p transcript_id AT1G26770.2 protein_id AT1G26770.2p transcript_id AT1G26770.2
At1g26770	chr1:009259805	0.0	W/9259805-9259934,9260011-9260323,9260486-9260792	AT1G26770.1 CDS expansin A10 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA EXPANSIN 10, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, AT-EXP10, ATEXP10, ATEXPA10, ATHEXP ALPHA 1.1, EXP10, EXPA10, EXPANSIN 10, T24P13.15, T24P13_15, expansin A10 gene EXPA10 function Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. go_component plant-type cell wall|GO:0009505|10931949|TAS go_process syncytium formation|GO:0006949|16942607|IEP go_process unidimensional cell growth|GO:0009826|11641069|NAS go_process unidimensional cell growth|GO:0009826||ISS go_process plant-type cell wall loosening|GO:0009828|10931949|IMP go_process plant-type cell wall loosening|GO:0009828|11641069|NAS go_process plant-type cell wall loosening|GO:0009828||ISS go_process plant-type cell wall modification involved in multidimensional cell growth|GO:0009831||ISS go_function structural constituent of cell wall|GO:0005199|10931949|TAS product expansin A10 note expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G26770.1p transcript_id AT1G26770.1 protein_id AT1G26770.1p transcript_id AT1G26770.1
At1g26771	chr1:009263169	0.0	C/9263169-9263273	AT1G26771.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G26771.1p transcript_id AT1G26771.1 protein_id AT1G26771.1p transcript_id AT1G26771.1
At1g26773	chr1:009264404	0.0	W/9264404-9264580	AT1G26773.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G26773.1p transcript_id AT1G26773.1 protein_id AT1G26773.1p transcript_id AT1G26773.1
At1g26780	chr1:009271033	0.0	W/9271033-9271429,9271683-9272117,9272216-9272463	AT1G26780.2 CDS myb domain protein 117 [TAIR10] CDS gene_syn AtMYB117, LATERAL ORGAN FUSION 1, LOF1, MYB117, T24P13.16, T24P13_16, myb domain protein 117 gene MYB117 function Encodes LOF1 (LATERAL ORGAN FUSION1), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF2 (At1g69560). go_process organ boundary specification between lateral organs and the meristem|GO:0010199|19542355|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb domain protein 117 note myb domain protein 117 (MYB117); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 105 (TAIR:AT1G69560.1); Has 8894 Blast hits to 7964 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 920; Fungi - 607; Plants - 5396; Viruses - 5; Other Eukaryotes - 1966 (source: NCBI BLink). protein_id AT1G26780.2p transcript_id AT1G26780.2 protein_id AT1G26780.2p transcript_id AT1G26780.2
At1g26780	chr1:009271033	0.0	W/9271033-9271429,9271683-9272128	AT1G26780.1 CDS myb domain protein 117 [TAIR10] CDS gene_syn AtMYB117, LATERAL ORGAN FUSION 1, LOF1, MYB117, T24P13.16, T24P13_16, myb domain protein 117 gene MYB117 function Encodes LOF1 (LATERAL ORGAN FUSION1), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF2 (At1g69560). go_process organ boundary specification between lateral organs and the meristem|GO:0010199|19542355|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb domain protein 117 note myb domain protein 117 (MYB117); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 105 (TAIR:AT1G69560.1); Has 8859 Blast hits to 7959 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 904; Fungi - 604; Plants - 5383; Viruses - 5; Other Eukaryotes - 1963 (source: NCBI BLink). protein_id AT1G26780.1p transcript_id AT1G26780.1 protein_id AT1G26780.1p transcript_id AT1G26780.1
At1g26790	chr1:009273857	0.0	C/9273857-9274810,9274940-9275104	AT1G26790.1 CDS Dof-type zinc finger DNA-binding family protein [TAIR10] CDS gene_syn T24P13.17, T24P13_17 go_component endomembrane system|GO:0012505||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12475498|ISS product Dof-type zinc finger DNA-binding family protein note Dof-type zinc finger DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT1G69570.1); Has 1165 Blast hits to 1142 proteins in 80 species: Archae - 0; Bacteria - 20; Metazoa - 7; Fungi - 8; Plants - 1093; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). protein_id AT1G26790.1p transcript_id AT1G26790.1 protein_id AT1G26790.1p transcript_id AT1G26790.1
At1g26795	chr1:009276419	0.0	W/9276419-9276874	AT1G26795.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT1G26796.1); Has 200 Blast hits to 188 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26795.1p transcript_id AT1G26795.1 protein_id AT1G26795.1p transcript_id AT1G26795.1
At1g26796	chr1:009278958	0.0	W/9278958-9279413	AT1G26796.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT1G26795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G26796.1p transcript_id AT1G26796.1 protein_id AT1G26796.1p transcript_id AT1G26796.1
At1g26797	chr1:009280986	0.0	W/9280986-9281408	AT1G26797.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT1G26798.1); Has 216 Blast hits to 204 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26797.1p transcript_id AT1G26797.1 protein_id AT1G26797.1p transcript_id AT1G26797.1
At1g26798	chr1:009281800	0.0	W/9281800-9282255	AT1G26798.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT1G26797.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G26798.1p transcript_id AT1G26798.1 protein_id AT1G26798.1p transcript_id AT1G26798.1
At1g26799	chr1:009283925	0.0	W/9283925-9284380	AT1G26799.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT1G26796.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G26799.1p transcript_id AT1G26799.1 protein_id AT1G26799.1p transcript_id AT1G26799.1
At1g26800	chr1:009285576	0.0	C/9285576-9286190	AT1G26800.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn T24P13.19, T24P13_19 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 9899 Blast hits to 9869 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 2681; Fungi - 828; Plants - 5098; Viruses - 14; Other Eukaryotes - 1278 (source: NCBI BLink). protein_id AT1G26800.1p transcript_id AT1G26800.1 protein_id AT1G26800.1p transcript_id AT1G26800.1
At1g26810	chr1:009286862	0.0	C/9286862-9287074,9287165-9287272,9287354-9287533,9287625-9287753,9287842-9288123,9288217-9288452,9288544-9289327	AT1G26810.1 CDS galactosyltransferase1 [TAIR10] CDS gene_syn GALT1, T24P13.20, T24P13_20, galactosyltransferase1 gene GALT1 function Encodes a protein with &#946;1,3-galactosyltransferase activity involved in the biosynthesis of the Lewis a epitope of certain glycoproteins. go_component Golgi apparatus|GO:0005794|17630273|IDA go_process Lewis a epitope biosynthetic process|GO:0010493|17630273|IMP go_function UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity|GO:0010488|17630273|IDA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS product galactosyltransferase1 note galactosyltransferase1 (GALT1); CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT3G06440.1); Has 2303 Blast hits to 2268 proteins in 112 species: Archae - 0; Bacteria - 4; Metazoa - 1677; Fungi - 5; Plants - 568; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). protein_id AT1G26810.1p transcript_id AT1G26810.1 protein_id AT1G26810.1p transcript_id AT1G26810.1
AT1G26810	chr1:009286862	0.0	C/9286862-9287074,9287165-9287272,9287354-9287533,9287625-9287753,9287842-9288123,9288217-9288452,9288544-9289327	AT1G26810.2 AT1G26810.2 CDS galactosyltransferase1
At1g26815	chr1:009290874	0.0	C/9290874-9291194	AT1G26815.1 CDS FBD domain family [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product FBD domain family note FBD domain family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 20 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26815.1p transcript_id AT1G26815.1 protein_id AT1G26815.1p transcript_id AT1G26815.1
At1g26820	chr1:009292760	0.0	C/9292760-9292983,9293084-9293282,9293394-9293549,9293633-9293722	AT1G26820.1 CDS ribonuclease 3 [TAIR10] CDS gene_syn RIBONUCLEASE 3, RNS3, T24P13.23, ribonuclease 3 gene RNS3 function Encodes ribonuclease RNS3. go_component endomembrane system|GO:0012505||IEA go_function RNA binding|GO:0003723||IEA go_function ribonuclease T2 activity|GO:0033897||IEA go_process aging|GO:0007568|8000425|IEP go_function endoribonuclease activity|GO:0004521||ISS product ribonuclease 3 note ribonuclease 3 (RNS3); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2544 Blast hits to 2543 proteins in 498 species: Archae - 0; Bacteria - 415; Metazoa - 284; Fungi - 227; Plants - 1506; Viruses - 7; Other Eukaryotes - 105 (source: NCBI BLink). protein_id AT1G26820.1p transcript_id AT1G26820.1 protein_id AT1G26820.1p transcript_id AT1G26820.1
At1g26830	chr1:009296063	0.0	W/9296063-9296223,9296337-9298374	AT1G26830.1 CDS cullin 3 [TAIR10] CDS gene_syn ATCUL3, ATCUL3A, CUL3, CUL3A, T24P13.25, cullin 3, cullin 3A gene CUL3 function Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. go_component ubiquitin ligase complex|GO:0000151|11019805|TAS go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS go_process cell cycle|GO:0007049||ISS go_process response to red or far red light|GO:0009639|15659098|IMP go_process embryo development ending in seed dormancy|GO:0009793|16045478|IGI go_process positive regulation of flower development|GO:0009911|15659098|IMP go_process endosperm development|GO:0009960|16045478|IGI go_function ubiquitin-protein ligase activity|GO:0004842||ISS go_function protein binding|GO:0005515|15618422|IPI go_function protein binding|GO:0005515|15659098|IPI go_function protein binding|GO:0005515|15749712|IPI product cullin 3 note cullin 3 (CUL3); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 3B (TAIR:AT1G69670.1); Has 2310 Blast hits to 2269 proteins in 235 species: Archae - 0; Bacteria - 9; Metazoa - 1034; Fungi - 455; Plants - 372; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink). protein_id AT1G26830.1p transcript_id AT1G26830.1 protein_id AT1G26830.1p transcript_id AT1G26830.1
At1g26840	chr1:009298822	0.0	W/9298822-9298941,9299036-9299082,9299182-9299286,9299387-9299467,9299566-9299677,9299758-9299820,9299907-9299994,9300139-9300203,9300329-9300425,9300527-9300603	AT1G26840.1 CDS origin recognition complex protein 6 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, ATORC6, ORC6, ORIGIN RECOGNITION COMPLEX SUBUNIT 6, T2P11.3, T2P11_3, origin recognition complex protein 6 gene ORC6 function Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. go_function DNA binding|GO:0003677||IEA go_component origin recognition complex|GO:0000808|16179646|ISS go_process DNA replication|GO:0006260|16179646|ISS product origin recognition complex protein 6 note origin recognition complex protein 6 (ORC6); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA replication; LOCATED IN: origin recognition complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Origin recognition complex, subunit 6, metazoa/plant (InterPro:IPR020529), Origin recognition complex, subunit 6 (InterPro:IPR008721); Has 179 Blast hits to 179 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). protein_id AT1G26840.1p transcript_id AT1G26840.1 protein_id AT1G26840.1p transcript_id AT1G26840.1
At1g26850	chr1:009301146	0.0	C/9301146-9301371,9301462-9301539,9301631-9302020,9302104-9302398,9302491-9302701,9302782-9303432	AT1G26850.1 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn T2P11.4, T2P11_4 go_component membrane|GO:0016020|17432890|IDA go_component Golgi apparatus|GO:0005794|16618929|IDA product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G18030.1); Has 1056 Blast hits to 1041 proteins in 100 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 923; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G26850.1p transcript_id AT1G26850.1 protein_id AT1G26850.1p transcript_id AT1G26850.1
At1g26850	chr1:009301146	0.0	C/9301146-9301371,9301462-9301539,9301631-9302020,9302104-9302398,9302491-9302701,9302782-9303432	AT1G26850.2 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn T2P11.4, T2P11_4 go_component membrane|GO:0016020|17432890|IDA go_component Golgi apparatus|GO:0005794|16618929|IDA product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G18030.1); Has 1056 Blast hits to 1041 proteins in 100 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 923; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G26850.2p transcript_id AT1G26850.2 protein_id AT1G26850.2p transcript_id AT1G26850.2
At1g26850	chr1:009301357	0.0	C/9301357-9301371,9301672-9302020,9302104-9302398,9302491-9302701,9302782-9303432	AT1G26850.3 CDS S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [TAIR10] CDS gene_syn T2P11.4, T2P11_4 go_component membrane|GO:0016020|17432890|IDA go_component Golgi apparatus|GO:0005794|16618929|IDA product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G18030.1); Has 1039 Blast hits to 1012 proteins in 98 species: Archae - 0; Bacteria - 124; Metazoa - 0; Fungi - 0; Plants - 910; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G26850.3p transcript_id AT1G26850.3 protein_id AT1G26850.3p transcript_id AT1G26850.3
At1g26860	chr1:009304982	0.0	C/9304982-9305443,9305540-9305800	AT1G26860.1 [TAIR10] mRNA
At1g26860	chr1:009304982	0.0	C/9304982-9305800	AT1G26860 [TAIR10] TE pseudo gene_syn T2P11.5, T2P11_5 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
At1g26870	chr1:009313029	0.0	W/9313029-9313215,9313323-9313627,9314219-9314983	AT1G26870.1 CDS NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [TAIR10] CDS gene_syn ANAC009, Arabidopsis NAC domain containing protein 9, FEZ, T2P11.6, T2P11_6 gene FEZ go_component nucleus|GO:0005634|19081078|IDA go_process multicellular organismal development|GO:0007275||ISS go_process response to auxin stimulus|GO:0009733|19081078|IEP go_process positive regulation of asymmetric cell division|GO:0045770|19081078|IMP go_process somatic stem cell division|GO:0048103|19081078|IMP go_process root cap development|GO:0048829|19081078|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC (No Apical Meristem) domain transcriptional regulator superfamily protein note FEZ (FEZ); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 2973 Blast hits to 2966 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2971; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26870.1p transcript_id AT1G26870.1 protein_id AT1G26870.1p transcript_id AT1G26870.1
At1g26880	chr1:009315640	0.0	C/9315640-9315733,9315820-9315929,9316400-9316479,9316603-9316681	AT1G26880.1 CDS Ribosomal protein L34e superfamily protein [TAIR10] CDS gene_syn T2P11.7, T2P11_7 go_component nucleolus|GO:0005730|15496452|IDA go_component chloroplast|GO:0009507|15028209|IDA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_process ribosome biogenesis|GO:0042254||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L34e superfamily protein note Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: ribosomal protein L34 (TAIR:AT1G69620.1); Has 959 Blast hits to 959 proteins in 320 species: Archae - 70; Bacteria - 0; Metazoa - 301; Fungi - 143; Plants - 198; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink). protein_id AT1G26880.1p transcript_id AT1G26880.1 protein_id AT1G26880.1p transcript_id AT1G26880.1
At1g26880	chr1:009315798	0.0	C/9315798-9315929,9316400-9316479,9316603-9316681	AT1G26880.2 CDS Ribosomal protein L34e superfamily protein [TAIR10] CDS gene_syn T2P11.7, T2P11_7 go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_process ribosome biogenesis|GO:0042254||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L34e superfamily protein note Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: ribosomal protein L34 (TAIR:AT1G69620.1); Has 937 Blast hits to 937 proteins in 311 species: Archae - 67; Bacteria - 0; Metazoa - 288; Fungi - 137; Plants - 198; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink). protein_id AT1G26880.2p transcript_id AT1G26880.2 protein_id AT1G26880.2p transcript_id AT1G26880.2
At1g26890	chr1:009317589	0.0	W/9317589-9318377,9318444-9318653,9318732-9318869,9318956-9319078	AT1G26890.1 CDS FBD, F-box and Leucine Rich Repeat domains containing protein [TAIR10] CDS gene_syn T2P11.8, T2P11_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product FBD, F-box and Leucine Rich Repeat domains containing protein note FBD, F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 1858 Blast hits to 1416 proteins in 137 species: Archae - 0; Bacteria - 126; Metazoa - 320; Fungi - 122; Plants - 570; Viruses - 85; Other Eukaryotes - 635 (source: NCBI BLink). protein_id AT1G26890.1p transcript_id AT1G26890.1 protein_id AT1G26890.1p transcript_id AT1G26890.1
AT1G26890	chr1:009317589	0.0	W/9317589-9318377,9318444-9318653,9318732-9318869,9318956-9319078	AT1G26890.6 AT1G26890.6 CDS FBD, F-box and Leucine Rich Repeat domains containing protein
AT1G26890	chr1:009317589	0.0	W/9317589-9318473,9318562-9318603	AT1G26890.3 AT1G26890.3 CDS FBD, F-box and Leucine Rich Repeat domains containing protein
AT1G26890	chr1:009317589	0.0	W/9317589-9318473,9318562-9318603	AT1G26890.5 AT1G26890.5 CDS FBD, F-box and Leucine Rich Repeat domains containing protein
AT1G26890	chr1:009317589	0.0	W/9317589-9318707	AT1G26890.2 AT1G26890.2 CDS FBD, F-box and Leucine Rich Repeat domains containing protein
AT1G26890	chr1:009317589	0.0	W/9317589-9318707	AT1G26890.4 AT1G26890.4 CDS FBD, F-box and Leucine Rich Repeat domains containing protein
At1g26900	chr1:009319756	0.0	C/9319756-9321474	AT1G26900.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn T2P11.9, T2P11_9 go_component mitochondrion|GO:0005739||IEA product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 36640 Blast hits to 13575 proteins in 201 species: Archae - 0; Bacteria - 9; Metazoa - 54; Fungi - 45; Plants - 36058; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink). protein_id AT1G26900.1p transcript_id AT1G26900.1 protein_id AT1G26900.1p transcript_id AT1G26900.1
AT1G26900	chr1:009319756	0.0	C/9319756-9321474	AT1G26900.2 AT1G26900.2 CDS Pentatricopeptide repeat (PPR) superfamily protein
AT1G26900	chr1:009319756	0.0	C/9319756-9321474	AT1G26900.3 AT1G26900.3 CDS Pentatricopeptide repeat (PPR) superfamily protein
At1g26910	chr1:009321709	0.0	W/9321709-9321718,9322072-9322573,9322660-9322813	AT1G26910.1 CDS Ribosomal protein L16p/L10e family protein [TAIR10] CDS gene_syn RPL10B, T2P11.10, T2P11_10, ribosomal protein L10 B gene RPL10B go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_component ribosome|GO:0005840||ISS go_process translation|GO:0006412||ISS go_process response to UV-B|GO:0010224|20516338|IEP go_process developmental process|GO:0032502|20516338|IMP go_function structural constituent of ribosome|GO:0003735|20516338|IPI go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L16p/L10e family protein note Ribosomal protein L16p/L10e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to UV-B, developmental process, translation; LOCATED IN: ribosome, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G14320.1); Has 1680 Blast hits to 1678 proteins in 606 species: Archae - 325; Bacteria - 13; Metazoa - 563; Fungi - 162; Plants - 159; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink). protein_id AT1G26910.1p transcript_id AT1G26910.1 protein_id AT1G26910.1p transcript_id AT1G26910.1
AT1G26910	chr1:009321709	0.0	W/9321709-9321718,9322072-9322573,9322660-9322813	AT1G26910.2 AT1G26910.2 CDS Ribosomal protein L16p/L10e family protein
AT1G26910	chr1:009322173	0.0	W/9322173-9322573,9322660-9322813	AT1G26910.3 AT1G26910.3 CDS Ribosomal protein L16p/L10e family protein
At1g26911	chr1:009323740	0.0	W/9323740-9323826,9323913-9324020,9324115-9324200	AT1G26911.1 [TAIR10] pseudogene
At1g26916	chr1:009327156	0.0	W/9327156-9327251	AT1G26916.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G26916.1p transcript_id AT1G26916.1 protein_id AT1G26916.1p transcript_id AT1G26916.1
At1g26920	chr1:009329584	0.0	W/9329584-9330105	AT1G26920.1 CDS zinc finger CCHC domain protein [TAIR10] CDS gene_syn T2P11.11, T2P11_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69760.1); Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G26920.1p transcript_id AT1G26920.1 protein_id AT1G26920.1p transcript_id AT1G26920.1
At1g26921	chr1:009330956	0.0	C/9330956-9331105	AT1G26921.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G26921.1p transcript_id AT1G26921.1 protein_id AT1G26921.1p transcript_id AT1G26921.1
AT1G26930	chr1:009336211	0.0	C/9336211-9336850,9337007-9337476	AT1G26930.2 AT1G26930.2 CDS Galactose oxidase/kelch repeat superfamily protein
At1g26930	chr1:009336211	0.0	C/9336211-9337476	AT1G26930.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn T2P11.12, T2P11_12 go_component peroxisome|GO:0005777|12154131|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G14330.1); Has 7430 Blast hits to 4183 proteins in 281 species: Archae - 4; Bacteria - 357; Metazoa - 5522; Fungi - 18; Plants - 1152; Viruses - 81; Other Eukaryotes - 296 (source: NCBI BLink). protein_id AT1G26930.1p transcript_id AT1G26930.1 protein_id AT1G26930.1p transcript_id AT1G26930.1
At1g26940	chr1:009343193	0.0	W/9343193-9343303,9343534-9343647,9343743-9343891,9344056-9344128,9344208-9344297,9344389-9344428,9344772-9344854,9344942-9344962	AT1G26940.1 CDS Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [TAIR10] CDS gene_syn T2P11.13, T2P11_13 go_component endomembrane system|GO:0012505||IEA go_process protein folding|GO:0006457||IEA go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA go_process protein folding|GO:0006457||ISS go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS product Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein note Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin71 (TAIR:AT3G44600.1); Has 11471 Blast hits to 11465 proteins in 2220 species: Archae - 104; Bacteria - 5913; Metazoa - 1282; Fungi - 864; Plants - 581; Viruses - 0; Other Eukaryotes - 2727 (source: NCBI BLink). protein_id AT1G26940.1p transcript_id AT1G26940.1 protein_id AT1G26940.1p transcript_id AT1G26940.1
AT1G26940	chr1:009343516	0.0	W/9343516-9343647,9343743-9343891,9344056-9344128,9344208-9344297,9344389-9344428,9344772-9344854,9344942-9344962	AT1G26940.2 AT1G26940.2 CDS Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
At1g26945	chr1:009351571	0.0	W/9351571-9351699,9352319-9352474	AT1G26945.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn KDR, KIDARI gene KDR function Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity. go_component nucleus|GO:0005634||IEA go_component chloroplast|GO:0009507||IEA go_function transcription regulator activity|GO:0030528||IEA go_process response to light stimulus|GO:0009416|16786307|IMP product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note KIDARI (KDR); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: response to light stimulus; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT3G28857.1); Has 97 Blast hits to 97 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G26945.1p transcript_id AT1G26945.1 protein_id AT1G26945.1p transcript_id AT1G26945.1
At1g26950	chr1:009353848	0.0	C/9353848-9354324	AT1G26950.1 [TAIR10] mRNA
At1g26950	chr1:009353848	0.0	C/9353848-9354324	AT1G26950 [TAIR10] TE pseudo gene_syn T2P11.14, T2P11_14 note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT5G33360.1); similar to RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] (GB:ABE81893.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
At1g26960	chr1:009356126	0.0	W/9356126-9356231,9356313-9356683,9356949-9357239	AT1G26960.1 CDS homeobox protein 23 [TAIR10] CDS gene_syn AtHB23, HB23, T2P11.15, T2P11_15, homeobox protein 23 gene AtHB23 function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to gibberellin stimulus|GO:0009739|17387478|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product homeobox protein 23 note homeobox protein 23 (AtHB23); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein family (TAIR:AT1G69780.1); Has 11101 Blast hits to 11053 proteins in 666 species: Archae - 0; Bacteria - 4; Metazoa - 8567; Fungi - 242; Plants - 2058; Viruses - 5; Other Eukaryotes - 225 (source: NCBI BLink). protein_id AT1G26960.1p transcript_id AT1G26960.1 protein_id AT1G26960.1p transcript_id AT1G26960.1
At1g26970	chr1:009359826	0.0	W/9359826-9359883,9360006-9360352,9360450-9360588,9360773-9360903,9361103-9361666	AT1G26970.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn T2P11.16 go_component chloroplast|GO:0009507||IEA go_process protein amino acid phosphorylation|GO:0006468||IEA go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G69790.1); Has 119741 Blast hits to 118328 proteins in 4438 species: Archae - 125; Bacteria - 14003; Metazoa - 44350; Fungi - 10257; Plants - 33212; Viruses - 391; Other Eukaryotes - 17403 (source: NCBI BLink). protein_id AT1G26970.1p transcript_id AT1G26970.1 protein_id AT1G26970.1p transcript_id AT1G26970.1
AT1G26970	chr1:009360293	0.0	W/9360293-9360352,9360450-9360588,9360773-9360903,9361103-9361666	AT1G26970.2 AT1G26970.2 CDS Protein kinase superfamily protein
At1g26973	chr1:009363196	0.0	C/9363196-9363288	AT1G26973.1 [TAIR10] miRNA gene_syn MICRORNA 395, MIR395, MIR395A, microRNA395A gene MIR395A function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGAACUC. Predicted targets are ATP sulfurylases. go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP go_process gene silencing by miRNA|GO:0035195|15851028|IDA product MIR395A (microRNA395A); miRNA transcript_id AT1G26973.1
At1g26975	chr1:009364471	0.0	W/9364471-9364570	AT1G26975.1 [TAIR10] miRNA gene_syn MICRORNA 395, MIR395, MIR395B, microRNA395B gene MIR395B function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases. go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP go_process cellular response to sulfur starvation|GO:0010438|19854858|IEP go_process cellular response to phosphate starvation|GO:0016036|19854858|IEP go_process gene silencing by miRNA|GO:0035195|15851028|IDA product MIR395B (microRNA395B); miRNA transcript_id AT1G26975.1
At1g26976	chr1:009364996	0.0	W/9364996-9365037,9365160-9365252,9365563-9365610	AT1G26976.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G26976.1p transcript_id AT1G26976.1 protein_id AT1G26976.1p transcript_id AT1G26976.1
At1g26985	chr1:009367080	0.0	W/9367080-9367179	AT1G26985.1 [TAIR10] miRNA gene_syn MICRORNA 395, MIR395, MIR395C, microRNA395C gene MIR395C function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of 21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases. go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP go_process cellular response to sulfur starvation|GO:0010438|19854858|IEP go_process cellular response to phosphate starvation|GO:0016036|19854858|IEP go_process gene silencing by miRNA|GO:0035195|15851028|IDA product MIR395C (microRNA395C); miRNA transcript_id AT1G26985.1
At1g26990	chr1:009368531	0.0	C/9368531-9373180	AT1G26990.1 [TAIR10] mRNA
At1g26990	chr1:009368531	0.0	C/9368531-9373180	AT1G26990 [TAIR10] TE pseudo gene_syn T7N9.5, T7N9_5 note Transposable element gene, copia-like retrotransposon family, has a 2.0e-294 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
At1g27000	chr1:009374068	0.0	W/9374068-9374122,9374228-9374289,9374375-9374452,9374532-9374607,9374705-9374775,9374888-9374989,9375080-9375169,9375297-9375371,9375608-9375640,9375742-9375813,9376004-9376066,9376199-9376314,9376401-9376422	AT1G27000.1 CDS GRIP/coiled-coil protein, putative (DUF1664) [TAIR10] CDS gene_syn T2P11.17 go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function DNA binding|GO:0003677||ISS product Protein of unknown function (DUF1664) note Protein of unknown function (DUF1664); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT2G02730.2); Has 199 Blast hits to 190 proteins in 29 species: Archae - 0; Bacteria - 14; Metazoa - 2; Fungi - 2; Plants - 161; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT1G27000.1p transcript_id AT1G27000.1 protein_id AT1G27000.1p transcript_id AT1G27000.1
At1g27008	chr1:009376788	0.0	C/9376788-9376898,9377068-9377244	AT1G27008.1 CDS transmembrane protein, putative [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. protein_id AT1G27008.1p transcript_id AT1G27008.1 protein_id AT1G27008.1p transcript_id AT1G27008.1
At1g27020	chr1:009378635	0.0	W/9378635-9378673,9378751-9378903,9379337-9379555,9379646-9379761,9379858-9380021,9380113-9380267,9380339-9380419	AT1G27020.1 CDS plant/protein [TAIR10] CDS gene_syn T7N9.8, T7N9_8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 514 Blast hits to 514 proteins in 175 species: Archae - 0; Bacteria - 311; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). protein_id AT1G27020.1p transcript_id AT1G27020.1 protein_id AT1G27020.1p transcript_id AT1G27020.1
At1g27030	chr1:009381842	0.0	W/9381842-9381880,9381957-9382109,9382201-9382419,9382508-9382623,9383100-9383263,9383371-9383525,9383626-9383712	AT1G27030.1 CDS hypothetical protein [TAIR10] CDS gene_syn T7N9.9, T7N9_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27020.1); Has 504 Blast hits to 502 proteins in 169 species: Archae - 0; Bacteria - 299; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). protein_id AT1G27030.1p transcript_id AT1G27030.1 protein_id AT1G27030.1p transcript_id AT1G27030.1
At1g27040	chr1:009386893	0.0	C/9386893-9387825,9387917-9388354,9389391-9389608,9389736-9389838	AT1G27040.2 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn T7N9.10, T7N9_10 go_component membrane|GO:0016020||IEA go_process oligopeptide transport|GO:0006857||IEA go_function transporter activity|GO:0005215||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G27040.2p transcript_id AT1G27040.2 protein_id AT1G27040.2p transcript_id AT1G27040.2
At1g27040	chr1:009386893	0.0	C/9386893-9387825,9387917-9388354,9389391-9389608,9389736-9389847,9390016-9390018	AT1G27040.1 CDS Major facilitator superfamily protein [TAIR10] CDS gene_syn T7N9.10, T7N9_10 go_component membrane|GO:0016020||IEA go_process oligopeptide transport|GO:0006857||IEA go_function transporter activity|GO:0005215||ISS product Major facilitator superfamily protein note Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 5753 Blast hits to 5637 proteins in 1030 species: Archae - 0; Bacteria - 2265; Metazoa - 487; Fungi - 395; Plants - 2179; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink). protein_id AT1G27040.1p transcript_id AT1G27040.1 protein_id AT1G27040.1p transcript_id AT1G27040.1
AT1G27040	chr1:009386893	0.0	C/9386893-9387825,9387917-9388354,9389391-9389627	AT1G27040.3 AT1G27040.3 CDS Major facilitator superfamily protein
At1g27045	chr1:009391893	0.0	W/9391893-9392010,9392247-9392596,9392672-9392887	AT1G27045.1 CDS Homeobox-leucine zipper protein family [TAIR10] CDS go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_process regulation of transcription|GO:0045449||IEA go_function DNA binding|GO:0003677||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||IEA go_function transcription regulator activity|GO:0030528||IEA go_function sequence-specific DNA binding|GO:0043565||IEA product Homeobox-leucine zipper protein family note Homeobox-leucine zipper protein family; FUNCTIONS IN: sequence-specific DNA binding, transcription regulator activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox 1 (TAIR:AT3G01470.1). protein_id AT1G27045.1p transcript_id AT1G27045.1 protein_id AT1G27045.1p transcript_id AT1G27045.1
AT1G27045	chr1:009391893	0.0	W/9391893-9392010,9392247-9392887	AT1G27045.4 AT1G27045.4 CDS Homeobox-leucine zipper protein family
AT1G27045	chr1:009392258	0.0	W/9392258-9392596,9392672-9392887	AT1G27045.3 AT1G27045.3 CDS Homeobox-leucine zipper protein family
AT1G27045	chr1:009392258	0.0	W/9392258-9392596,9392672-9392887	AT1G27045.5 AT1G27045.5 CDS Homeobox-leucine zipper protein family
AT1G27045	chr1:009392282	0.0	W/9392282-9392596,9392672-9392887	AT1G27045.2 AT1G27045.2 CDS Homeobox-leucine zipper protein family
At1g27050	chr1:009393706	0.0	W/9393706-9394047,9394133-9394408	AT1G27050.1 CDS homeobox leucine zipper protein [TAIR10] CDS gene_syn ATHB54, HB54, T7N9.11, T7N9_11, homeobox protein 54 gene HB54 function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product homeobox protein 54 note homeobox protein 54 (HB54); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 5308 Blast hits to 5298 proteins in 368 species: Archae - 2; Bacteria - 4; Metazoa - 3484; Fungi - 119; Plants - 1607; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). protein_id AT1G27050.1p transcript_id AT1G27050.1 protein_id AT1G27050.1p transcript_id AT1G27050.1
At1g27060	chr1:009395023	0.0	W/9395023-9395218,9395300-9395452,9395534-9395692,9395766-9395924,9396017-9396148,9396228-9396392,9396477-9396673	AT1G27060.1 CDS Regulator of chromosome condensation (RCC1) family protein [TAIR10] CDS gene_syn T7N9.12, T7N9_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function Ran GTPase binding|GO:0008536||ISS product Regulator of chromosome condensation (RCC1) family protein note Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 19815 Blast hits to 6041 proteins in 472 species: Archae - 85; Bacteria - 2553; Metazoa - 7293; Fungi - 979; Plants - 2476; Viruses - 2; Other Eukaryotes - 6427 (source: NCBI BLink). protein_id AT1G27060.1p transcript_id AT1G27060.1 protein_id AT1G27060.1p transcript_id AT1G27060.1
At1g27070	chr1:009396945	0.0	C/9396945-9397040,9397119-9397187,9397347-9397494,9397584-9397729,9397825-9398039,9398120-9398297,9398386-9398551,9398645-9399225	AT1G27070.1 CDS 5'-AMP-activated protein kinase-related [TAIR10] CDS gene_syn T7N9.13, T7N9_13 product 5'-AMP-activated protein kinase-related note 5'-AMP-activated protein kinase-related; BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT5G03420.1); Has 814 Blast hits to 789 proteins in 227 species: Archae - 3; Bacteria - 97; Metazoa - 231; Fungi - 191; Plants - 199; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). protein_id AT1G27070.1p transcript_id AT1G27070.1 protein_id AT1G27070.1p transcript_id AT1G27070.1
At1g27080	chr1:009400664	0.0	W/9400664-9400739,9401582-9401799,9402266-9402828,9402916-9403789	AT1G27080.1 CDS nitrate transporter 1.6 [TAIR10] CDS gene_syn NRT1.6, T7N9.14, T7N9_14, nitrate transporter 1.6 gene NRT1.6 function Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion. go_component plasma membrane|GO:0005886|19050168|IDA go_process embryo development ending in seed dormancy|GO:0009793|19050168|IMP go_process suspensor development|GO:0010098|19050168|IMP go_process cellular response to nitrogen levels|GO:0043562|19050168|IEP go_process seed development|GO:0048316|19050168|IMP go_process low affinity nitrate transport|GO:0080055|19050168|IDA go_function transporter activity|GO:0005215||ISS go_function low affinity nitrate transmembrane transporter activity|GO:0080054|19050168|IDA product nitrate transporter 1.6 note nitrate transporter 1.6 (NRT1.6); CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.7 (TAIR:AT1G69870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G27080.1p transcript_id AT1G27080.1 protein_id AT1G27080.1p transcript_id AT1G27080.1
AT1G27080	chr1:009401632	0.0	W/9401632-9401799,9402266-9402828,9402916-9403789	AT1G27080.2 AT1G27080.2 CDS nitrate transporter 1.6
At1g27090	chr1:009404041	0.0	C/9404041-9404397,9404481-9404555,9405182-9405342,9405429-9406098	AT1G27090.1 CDS glycine-rich protein [TAIR10] CDS gene_syn T7N9.15, T7N9_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product glycine-rich protein note glycine-rich protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24690.1); Has 13206 Blast hits to 7104 proteins in 677 species: Archae - 0; Bacteria - 2039; Metazoa - 5686; Fungi - 1146; Plants - 2571; Viruses - 80; Other Eukaryotes - 1684 (source: NCBI BLink). protein_id AT1G27090.1p transcript_id AT1G27090.1 protein_id AT1G27090.1p transcript_id AT1G27090.1
At1g27100	chr1:009407557	0.0	C/9407557-9407841,9407944-9408594,9410451-9411074	AT1G27100.1 CDS Actin cross-linking protein [TAIR10] CDS gene_syn T7N9.16, T7N9_16 go_component vacuole|GO:0005773|15539469|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Actin cross-linking protein note Actin cross-linking protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF569) (TAIR:AT1G69890.1); Has 362 Blast hits to 223 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 10; Plants - 341; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G27100.1p transcript_id AT1G27100.1 protein_id AT1G27100.1p transcript_id AT1G27100.1
At1g27110	chr1:009413018	0.0	C/9413018-9413113,9413195-9413259,9413356-9413440,9413532-9413621,9413716-9413767,9413862-9413968,9414057-9414164,9414251-9414380,9414476-9414570,9414660-9414803,9414924-9415025,9415141-9415176	AT1G27110.3 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T7N9.17, T7N9_17 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G27150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G27110.3p transcript_id AT1G27110.3 protein_id AT1G27110.3p transcript_id AT1G27110.3
At1g27110	chr1:009413018	0.0	C/9413018-9413113,9413195-9413259,9413356-9413440,9413532-9413621,9413716-9413767,9413862-9413968,9414057-9414164,9414251-9414380,9414476-9414570,9414660-9414803,9414924-9415025,9415141-9415239,9415384-9415536,9415790-9415879,9417357-9417392	AT1G27110.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T7N9.17, T7N9_17 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G27150.1); Has 512 Blast hits to 499 proteins in 150 species: Archae - 27; Bacteria - 221; Metazoa - 81; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). protein_id AT1G27110.1p transcript_id AT1G27110.1 protein_id AT1G27110.1p transcript_id AT1G27110.1
At1g27110	chr1:009413403	0.0	C/9413403-9413621,9413716-9413767,9413862-9413968,9414057-9414164,9414251-9414380,9414476-9414570,9414660-9414803,9414924-9415025,9415141-9415176	AT1G27110.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T7N9.17, T7N9_17 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G27150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G27110.2p transcript_id AT1G27110.2 protein_id AT1G27110.2p transcript_id AT1G27110.2
AT1G27110	chr1:009413403	0.0	C/9413403-9413621,9413716-9413767,9413862-9413968,9414057-9414164,9414251-9414380,9414476-9414570,9414660-9414803,9414924-9415025,9415141-9415239,9415384-9415536,9415790-9415879,9417357-9417392	AT1G27110.4 AT1G27110.4 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g27120	chr1:009421389	0.0	W/9421389-9422244,9422344-9422597,9422668-9422958,9423032-9423160,9423235-9423408,9423501-9423608,9423701-9423910	AT1G27120.1 CDS Galactosyltransferase family protein [TAIR10] CDS gene_syn T7N9.18, T7N9_18 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_process protein amino acid glycosylation|GO:0006486||IEA go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS product Galactosyltransferase family protein note Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT5G62620.1); Has 2356 Blast hits to 2323 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 1677; Fungi - 2; Plants - 620; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). protein_id AT1G27120.1p transcript_id AT1G27120.1 protein_id AT1G27120.1p transcript_id AT1G27120.1
AT1G27120	chr1:009421482	0.0	W/9421482-9422244,9422344-9422597,9422668-9422958,9423032-9423160,9423235-9423408,9423501-9423608,9423701-9423910	AT1G27120.2 AT1G27120.2 CDS Galactosyltransferase family protein
At1g27130	chr1:009425582	0.0	W/9425582-9425908,9426241-9426597	AT1G27130.1 CDS glutathione S-transferase tau 13 [TAIR10] CDS gene_syn ATGSTU13, GLUTATHIONE S-TRANSFERASE 12, GST12, GSTU13, T7N9.190, T7N9_190, glutathione S-transferase tau 13 gene GSTU13 function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytoplasm|GO:0005737|12090627|NAS go_process toxin catabolic process|GO:0009407|12090627|TAS go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase tau 13 note glutathione S-transferase tau 13 (GSTU13); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cadmium ion, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase tau 14 (TAIR:AT1G27140.1); Has 5143 Blast hits to 5126 proteins in 847 species: Archae - 0; Bacteria - 2240; Metazoa - 360; Fungi - 99; Plants - 1972; Viruses - 0; Other Eukaryotes - 472 (source: NCBI BLink). protein_id AT1G27130.1p transcript_id AT1G27130.1 protein_id AT1G27130.1p transcript_id AT1G27130.1
At1g27135	chr1:009427164	0.0	W/9427164-9427227,9427327-9427529	AT1G27135.1 CDS Maternally expressed gene (MEG) family protein [TAIR10] CDS function Encodes a Maternally expressed gene (MEG) family protein go_component endomembrane system|GO:0012505||IEA product Maternally expressed gene (MEG) family protein note Maternally expressed gene (MEG) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 39 Blast hits to 39 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27135.1p transcript_id AT1G27135.1 protein_id AT1G27135.1p transcript_id AT1G27135.1
At1g27140	chr1:009427858	0.0	W/9427858-9428187,9428315-9428716	AT1G27140.1 CDS glutathione S-transferase tau 14 [TAIR10] CDS gene_syn ATGSTU14, GLUTATHIONE S-TRANSFERASE 13, GST13, GSTU14, T7N9.20, T7N9_20, glutathione S-transferase tau 14 gene GSTU14 function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). go_component cytoplasm|GO:0005737|12090627|NAS go_process glutathione metabolic process|GO:0006749|19174456|IDA go_process toxin catabolic process|GO:0009407|12090627|TAS go_function glutathione transferase activity|GO:0004364|19174456|IDA go_function glutathione transferase activity|GO:0004364||ISS product glutathione S-transferase tau 14 note glutathione S-transferase tau 14 (GSTU14); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase tau 13 (TAIR:AT1G27130.1); Has 4856 Blast hits to 4841 proteins in 960 species: Archae - 0; Bacteria - 2156; Metazoa - 236; Fungi - 88; Plants - 1899; Viruses - 0; Other Eukaryotes - 477 (source: NCBI BLink). protein_id AT1G27140.1p transcript_id AT1G27140.1 protein_id AT1G27140.1p transcript_id AT1G27140.1
At1g27150	chr1:009429177	0.0	W/9429177-9429269,9429614-9429766,9429853-9429951,9430110-9430211,9430291-9430434,9430550-9430644,9430751-9430880,9430956-9431060,9431165-9431271,9431347-9431398,9431482-9431571,9431661-9431745,9431831-9431895,9431982-9432068	AT1G27150.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn T7N9.21, T7N9_21 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G27110.1); Has 429 Blast hits to 423 proteins in 137 species: Archae - 5; Bacteria - 191; Metazoa - 78; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). protein_id AT1G27150.1p transcript_id AT1G27150.1 protein_id AT1G27150.1p transcript_id AT1G27150.1
At1g27160	chr1:009432588	0.0	W/9432588-9433190	AT1G27160.1 CDS valyl-tRNA synthetase / valine--tRNA ligase-related [TAIR10] CDS gene_syn T7N9.22, T7N9_22 go_component cytoplasm|GO:0005737||IEA go_process translation|GO:0006412||IEA go_process tRNA aminoacylation for protein translation|GO:0006418||IEA go_process valyl-tRNA aminoacylation|GO:0006438||IEA go_function nucleotide binding|GO:0000166||IEA go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA go_function valine-tRNA ligase activity|GO:0004832||IEA go_function ATP binding|GO:0005524||IEA product valyl-tRNA synthetase / valine--tRNA ligase-related note valyl-tRNA synthetase / valine--tRNA ligase-related; FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, valyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 7044 Blast hits to 7043 proteins in 2564 species: Archae - 124; Bacteria - 5116; Metazoa - 229; Fungi - 143; Plants - 103; Viruses - 0; Other Eukaryotes - 1329 (source: NCBI BLink). protein_id AT1G27160.1p transcript_id AT1G27160.1 protein_id AT1G27160.1p transcript_id AT1G27160.1
At1g27170	chr1:009433577	0.0	W/9433577-9434049,9435287-9436403,9436488-9436898,9436986-9438584,9438665-9439219	AT1G27170.2 CDS transmembrane receptors / ATP binding protein [TAIR10] CDS gene_syn T7N9.23, T7N9_23 go_process apoptosis|GO:0006915||IEA go_process defense response|GO:0006952||IEA go_process signal transduction|GO:0007165||IEA go_process innate immune response|GO:0045087||IEA go_function transmembrane receptor activity|GO:0004888||IEA go_function ATP binding|GO:0005524||IEA go_process defense response|GO:0006952||ISS product transmembrane receptors;ATP binding note transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 88149 Blast hits to 36022 proteins in 1268 species: Archae - 44; Bacteria - 5525; Metazoa - 17765; Fungi - 1406; Plants - 58458; Viruses - 8; Other Eukaryotes - 4943 (source: NCBI BLink). protein_id AT1G27170.2p transcript_id AT1G27170.2 protein_id AT1G27170.2p transcript_id AT1G27170.2
At1g27170	chr1:009434718	0.0	W/9434718-9435190,9435287-9436403,9436488-9436898,9436986-9438584,9438665-9439219	AT1G27170.1 CDS transmembrane receptors / ATP binding protein [TAIR10] CDS gene_syn T7N9.23, T7N9_23 go_component chloroplast|GO:0009507|15028209|IDA go_process apoptosis|GO:0006915||IEA go_process defense response|GO:0006952||IEA go_process signal transduction|GO:0007165||IEA go_process innate immune response|GO:0045087||IEA go_function transmembrane receptor activity|GO:0004888||IEA go_function ATP binding|GO:0005524||IEA go_process defense response|GO:0006952||ISS product transmembrane receptors;ATP binding note transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G27170.1p transcript_id AT1G27170.1 protein_id AT1G27170.1p transcript_id AT1G27170.1
AT1G27180	chr1:009439859	0.0	W/9439859-9440331,9441867-9443016,9443103-9443513,9443588-9444815,9444901-9444908	AT1G27180.3 AT1G27180.3 CDS disease resistance protein (TIR-NBS-LRR class), putative
AT1G27180	chr1:009439859	0.0	W/9439859-9440331,9441867-9443016,9443103-9443513,9443588-9445189,9445270-9445818	AT1G27180.2 AT1G27180.2 CDS disease resistance protein (TIR-NBS-LRR class), putative
At1g27180	chr1:009439859	0.0	W/9439859-9440335,9441296-9441777,9441867-9443016,9443103-9443513,9443588-9445189,9445270-9445818	AT1G27180.1 CDS disease resistance protein (TIR-NBS-LRR class), putative [TAIR10] CDS gene_syn T7N9.24, T7N9_24 go_component intrinsic to membrane|GO:0031224||IEA go_process apoptosis|GO:0006915||IEA go_process defense response|GO:0006952||IEA go_process signal transduction|GO:0007165||IEA go_process innate immune response|GO:0045087||IEA go_function transmembrane receptor activity|GO:0004888||IEA go_function ATP binding|GO:0005524||IEA go_process defense response|GO:0006952||ISS product disease resistance protein (TIR-NBS-LRR class), putative note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptors;ATP binding (TAIR:AT1G27170.1); Has 83534 Blast hits to 33450 proteins in 1183 species: Archae - 68; Bacteria - 4700; Metazoa - 16188; Fungi - 1127; Plants - 56869; Viruses - 12; Other Eukaryotes - 4570 (source: NCBI BLink). protein_id AT1G27180.1p transcript_id AT1G27180.1 protein_id AT1G27180.1p transcript_id AT1G27180.1
AT1G27180	chr1:009441311	0.0	W/9441311-9441777,9441867-9443016,9443103-9443513,9443588-9445189,9445270-9445818	AT1G27180.5 AT1G27180.5 CDS disease resistance protein (TIR-NBS-LRR class), putative
AT1G27180	chr1:009441311	0.0	W/9441311-9441777,9441867-9443016,9443103-9443513,9443588-9445189,9445270-9445818	AT1G27180.8 AT1G27180.8 CDS disease resistance protein (TIR-NBS-LRR class), putative
AT1G27180	chr1:009441922	0.0	W/9441922-9443016,9443103-9443513,9443588-9445189,9445270-9445818	AT1G27180.4 AT1G27180.4 CDS disease resistance protein (TIR-NBS-LRR class), putative
AT1G27180	chr1:009441922	0.0	W/9441922-9443016,9443103-9443513,9443588-9445189,9445270-9445818	AT1G27180.6 AT1G27180.6 CDS disease resistance protein (TIR-NBS-LRR class), putative
AT1G27180	chr1:009441922	0.0	W/9441922-9443016,9443103-9443513,9443588-9445189,9445270-9445818	AT1G27180.7 AT1G27180.7 CDS disease resistance protein (TIR-NBS-LRR class), putative
At1g27190	chr1:009446923	0.0	C/9446923-9448728	AT1G27190.1 CDS Leucine-rich repeat protein kinase family protein [TAIR10] CDS gene_syn T7N9.25, T7N9_25 go_component plasma membrane|GO:0005886|17644812|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_component nucleus|GO:0005634|18433157|IDA go_component plasma membrane|GO:0005886|16618929|IDA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product Leucine-rich repeat protein kinase family protein note Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G69990.1); Has 109141 Blast hits to 65135 proteins in 2350 species: Archae - 52; Bacteria - 7607; Metazoa - 18517; Fungi - 2536; Plants - 71890; Viruses - 144; Other Eukaryotes - 8395 (source: NCBI BLink). protein_id AT1G27190.1p transcript_id AT1G27190.1 protein_id AT1G27190.1p transcript_id AT1G27190.1
At1g27200	chr1:009449812	0.0	C/9449812-9451539	AT1G27200.1 CDS glycosyltransferase family protein (DUF23) [TAIR10] CDS gene_syn T7N9.26, T7N9_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Domain of unknown function (DUF23) note CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 321 Blast hits to 319 proteins in 87 species: Archae - 0; Bacteria - 165; Metazoa - 2; Fungi - 4; Plants - 113; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). protein_id AT1G27200.1p transcript_id AT1G27200.1 protein_id AT1G27200.1p transcript_id AT1G27200.1
At1g27210	chr1:009455669	0.0	C/9455669-9455681,9455771-9456147,9456262-9456788,9456875-9456974,9457057-9457917	AT1G27210.1 CDS ARM repeat superfamily protein [TAIR10] CDS gene_syn T7N9.27, T7N9_27 go_component chloroplast|GO:0009507||IEA go_function binding|GO:0005488||IEA product ARM repeat superfamily protein note ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G59850.1); Has 516 Blast hits to 439 proteins in 115 species: Archae - 2; Bacteria - 40; Metazoa - 93; Fungi - 74; Plants - 195; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). protein_id AT1G27210.1p transcript_id AT1G27210.1 protein_id AT1G27210.1p transcript_id AT1G27210.1
At1g27213	chr1:009460035	0.0	C/9460035-9460187	AT1G27213.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G27213.1p transcript_id AT1G27213.1 protein_id AT1G27213.1p transcript_id AT1G27213.1
At1g27220	chr1:009463806	0.0	W/9463806-9463945,9464080-9464204,9465155-9465444	AT1G27220.1 CDS paired amphipathic helix repeat-containing protein [TAIR10] CDS gene_syn F17L21.2 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function nucleic acid binding|GO:0003676||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS product paired amphipathic helix repeat-containing protein note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27250.1); Has 833 Blast hits to 732 proteins in 188 species: Archae - 0; Bacteria - 52; Metazoa - 196; Fungi - 169; Plants - 372; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G27220.1p transcript_id AT1G27220.1 protein_id AT1G27220.1p transcript_id AT1G27220.1
At1g27240	chr1:009466237	0.0	W/9466237-9466376,9466493-9466739,9466815-9466916,9467005-9467076	AT1G27240.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F17L21.3 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G24210.1); Has 568 Blast hits to 542 proteins in 154 species: Archae - 0; Bacteria - 4; Metazoa - 189; Fungi - 136; Plants - 215; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). protein_id AT1G27240.1p transcript_id AT1G27240.1 protein_id AT1G27240.1p transcript_id AT1G27240.1
At1g27250	chr1:009468568	0.0	W/9468568-9468728,9468864-9468994,9469513-9469634	AT1G27250.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F17L21.4 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G27220.1); Has 603 Blast hits to 572 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 151; Plants - 225; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). protein_id AT1G27250.1p transcript_id AT1G27250.1 protein_id AT1G27250.1p transcript_id AT1G27250.1
At1g27260	chr1:009469948	0.0	W/9469948-9470054,9470131-9470400,9470497-9470614,9470717-9470818,9470896-9470967	AT1G27260.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F17L21.32 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G23810.1); Has 1078 Blast hits to 561 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 392; Fungi - 252; Plants - 385; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). protein_id AT1G27260.1p transcript_id AT1G27260.1 protein_id AT1G27260.1p transcript_id AT1G27260.1
At1g27270	chr1:009472077	0.0	W/9472077-9472219,9472303-9472596,9472693-9472810,9472897-9472998,9473081-9473149	AT1G27270.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F17L21.5, F17L21_5 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G23810.1); Has 680 Blast hits to 519 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 210; Fungi - 129; Plants - 307; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). protein_id AT1G27270.1p transcript_id AT1G27270.1 protein_id AT1G27270.1p transcript_id AT1G27270.1
At1g27280	chr1:009474027	0.0	W/9474027-9474103,9474196-9474456,9474565-9474754,9474841-9474990	AT1G27280.1 CDS Paired amphipathic helix (PAH2) superfamily protein [TAIR10] CDS gene_syn F17L21.6, F17L21_6 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function molecular_function|GO:0003674||ND product Paired amphipathic helix (PAH2) superfamily protein note Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G24230.1); Has 730 Blast hits to 554 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 160; Plants - 334; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). protein_id AT1G27280.1p transcript_id AT1G27280.1 protein_id AT1G27280.1p transcript_id AT1G27280.1
At1g27285	chr1:009476197	0.0	W/9476197-9480516	AT1G27285.1 [TAIR10] mRNA
At1g27285	chr1:009476197	0.0	W/9476197-9480516	AT1G27285 [TAIR10] TE pseudo gene_syn F17L21.7, F17L21_7 note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
At1g27290	chr1:009481788	0.0	W/9481788-9482199,9482560-9482576	AT1G27290.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F17L21.8, F17L21_8 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27290.1p transcript_id AT1G27290.1 protein_id AT1G27290.1p transcript_id AT1G27290.1
At1g27290	chr1:009481788	0.0	W/9481788-9482199,9482560-9482576	AT1G27290.2 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F17L21.8, F17L21_8 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27290.2p transcript_id AT1G27290.2 protein_id AT1G27290.2p transcript_id AT1G27290.2
At1g27300	chr1:009483324	0.0	W/9483324-9483464,9483733-9484194	AT1G27300.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F17L21.9, F17L21_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G27300.1p transcript_id AT1G27300.1 protein_id AT1G27300.1p transcript_id AT1G27300.1
At1g27310	chr1:009484615	0.0	C/9484615-9484686,9485494-9485790	AT1G27310.1 CDS nuclear transport factor 2A [TAIR10] CDS gene_syn F17L21.10, F17L21_10, NTF2A, nuclear transport factor 2A gene NTF2A function Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport. go_component intracellular|GO:0005622||ISS go_component nucleus|GO:0005634|15610358|IDA go_component nucleus|GO:0005634||ISS go_component nuclear envelope|GO:0005635|16428596|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_process protein import into nucleus|GO:0006606|16428596|IGI go_process protein import into nucleus|GO:0006606|16428596|IMP go_process protein import into nucleus|GO:0006606||ISS go_process nucleocytoplasmic transport|GO:0006913|16428596|IGI go_function Ran GTPase binding|GO:0008536|16428596|IGI go_function Ran GTPase binding|GO:0008536|16428596|IPI go_function protein transporter activity|GO:0008565||ISS product nuclear transport factor 2A note nuclear transport factor 2A (NTF2A); CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2B (TAIR:AT1G27970.1); Has 977 Blast hits to 977 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 243; Plants - 223; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). protein_id AT1G27310.1p transcript_id AT1G27310.1 protein_id AT1G27310.1p transcript_id AT1G27310.1
At1g27320	chr1:009487780	0.0	W/9487780-9488286,9488568-9488849,9489052-9489221,9489310-9489522,9489619-9489805,9489899-9489950,9490065-9490294,9490383-9490481,9490568-9491673,9491763-9492027	AT1G27320.1 CDS histidine kinase 3 [TAIR10] CDS gene_syn AHK3, F17L21.11, F17L21_11, HK3, histidine kinase 3 gene HK3 function Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. go_component plasma membrane|GO:0005886|16407152|IDA go_process response to osmotic stress|GO:0006970|18077346|IMP go_process response to cold|GO:0009409|18077346|IEP go_process response to water deprivation|GO:0009414|18077346|IEP go_process response to salt stress|GO:0009651|18077346|IEP go_process cytokinin mediated signaling pathway|GO:0009736|12068096|TAS go_process regulation of seed germination|GO:0010029|16361392|IMP go_process leaf senescence|GO:0010150|16407152|IMP go_process regulation of chlorophyll catabolic process|GO:0010271|16361392|IMP go_process defense response to bacterium|GO:0042742|19129491|IDA go_process defense response to bacterium|GO:0042742|19129491|IMP go_process regulation of shoot development|GO:0048831|16361392|IMP go_function protein histidine kinase activity|GO:0004673|16407152|IMP go_function protein histidine kinase activity|GO:0004673||ISS go_function osmosensor activity|GO:0005034|18077346|IGI go_function cytokinin receptor activity|GO:0009884|15923327|TAS go_function cytokinin receptor activity|GO:0009884|16361392|TAS product histidine kinase 3 note histidine kinase 3 (HK3); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 124308 Blast hits to 110912 proteins in 3043 species: Archae - 772; Bacteria - 110408; Metazoa - 31; Fungi - 2185; Plants - 2022; Viruses - 28; Other Eukaryotes - 8862 (source: NCBI BLink). protein_id AT1G27320.1p transcript_id AT1G27320.1 protein_id AT1G27320.1p transcript_id AT1G27320.1
At1g27330	chr1:009493064	0.0	W/9493064-9493066,9493523-9493679,9493852-9493898	AT1G27330.1 CDS Ribosome associated membrane protein RAMP4 [TAIR10] CDS gene_syn F17L21.12, F17L21_12 go_component cellular_component|GO:0005575||ND go_process response to oxidative stress|GO:0006979|18614705|IMP go_function molecular_function|GO:0003674||ND product Ribosome associated membrane protein RAMP4 note Ribosome associated membrane protein RAMP4; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: Ribosome associated membrane protein RAMP4 (TAIR:AT1G27350.1); Has 348 Blast hits to 348 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 210; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). protein_id AT1G27330.1p transcript_id AT1G27330.1 protein_id AT1G27330.1p transcript_id AT1G27330.1
At1g27340	chr1:009495741	0.0	W/9495741-9495892,9496606-9497857	AT1G27340.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F17L21.13, F17L21_13 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G15710.1); Has 1110 Blast hits to 1104 proteins in 52 species: Archae - 0; Bacteria - 1; Metazoa - 2; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G27340.1p transcript_id AT1G27340.1 protein_id AT1G27340.1p transcript_id AT1G27340.1
At1g27350	chr1:009498319	0.0	C/9498319-9498365,9498628-9498784,9499301-9499303	AT1G27350.1 CDS Ribosome associated membrane protein RAMP4 [TAIR10] CDS gene_syn F17L21.31 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Ribosome associated membrane protein RAMP4 note Ribosome associated membrane protein RAMP4; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: Ribosome associated membrane protein RAMP4 (TAIR:AT1G27330.1); Has 348 Blast hits to 348 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 210; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). protein_id AT1G27350.1p transcript_id AT1G27350.1 protein_id AT1G27350.1p transcript_id AT1G27350.1
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.1 CDS squamosa promoter-like 11 [TAIR10] CDS gene_syn F17L21.14, F17L21_14, SPL11, squamosa promoter-like 11 gene SPL11 function In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription|GO:0045449|11118137|TAS go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|19880401|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product squamosa promoter-like 11 note squamosa promoter-like 11 (SPL11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 10 (TAIR:AT1G27370.4); Has 855 Blast hits to 854 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 855; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27360.1p transcript_id AT1G27360.1 protein_id AT1G27360.1p transcript_id AT1G27360.1
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.2 CDS squamosa promoter-like 11 [TAIR10] CDS gene_syn F17L21.14, F17L21_14, SPL11, squamosa promoter-like 11 gene SPL11 function In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription|GO:0045449|11118137|TAS go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|19880401|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product squamosa promoter-like 11 note squamosa promoter-like 11 (SPL11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 10 (TAIR:AT1G27370.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G27360.2p transcript_id AT1G27360.2 protein_id AT1G27360.2p transcript_id AT1G27360.2
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.3 CDS squamosa promoter-like 11 [TAIR10] CDS gene_syn F17L21.14, F17L21_14, SPL11, squamosa promoter-like 11 gene SPL11 function In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription|GO:0045449|11118137|TAS go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|19880401|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product squamosa promoter-like 11 note squamosa promoter-like 11 (SPL11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 10 (TAIR:AT1G27370.4); Has 855 Blast hits to 854 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 855; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27360.3p transcript_id AT1G27360.3 protein_id AT1G27360.3p transcript_id AT1G27360.3
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.4 CDS squamosa promoter-like 11 [TAIR10] CDS gene_syn F17L21.14, F17L21_14, SPL11, squamosa promoter-like 11 gene SPL11 function In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription|GO:0045449|11118137|TAS go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|19880401|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product squamosa promoter-like 11 note squamosa promoter-like 11 (SPL11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 10 (TAIR:AT1G27370.4); Has 855 Blast hits to 854 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 855; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27360.4p transcript_id AT1G27360.4 protein_id AT1G27360.4p transcript_id AT1G27360.4
At1g27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.1 CDS squamosa promoter binding protein-like 10 [TAIR10] CDS gene_syn F17L21.15, F17L21_15, SPL10, squamosa promoter binding protein-like 10 gene SPL10 function In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL10 also controls lamina shape during vegetative development. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process leaf shaping|GO:0010358|19880401|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|19880401|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|19880401|IDA product squamosa promoter binding protein-like 10 note squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 868 Blast hits to 867 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27370.1p transcript_id AT1G27370.1 protein_id AT1G27370.1p transcript_id AT1G27370.1
At1g27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.2 CDS squamosa promoter binding protein-like 10 [TAIR10] CDS gene_syn F17L21.15, F17L21_15, SPL10, squamosa promoter binding protein-like 10 gene SPL10 function In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL10 also controls lamina shape during vegetative development. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process leaf shaping|GO:0010358|19880401|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|19880401|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|19880401|IDA product squamosa promoter binding protein-like 10 note squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G27370.2p transcript_id AT1G27370.2 protein_id AT1G27370.2p transcript_id AT1G27370.2
At1g27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.3 CDS squamosa promoter binding protein-like 10 [TAIR10] CDS gene_syn F17L21.15, F17L21_15, SPL10, squamosa promoter binding protein-like 10 gene SPL10 function In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL10 also controls lamina shape during vegetative development. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process leaf shaping|GO:0010358|19880401|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|19880401|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|19880401|IDA product squamosa promoter binding protein-like 10 note squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 868 Blast hits to 867 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27370.3p transcript_id AT1G27370.3 protein_id AT1G27370.3p transcript_id AT1G27370.3
At1g27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.4 CDS squamosa promoter binding protein-like 10 [TAIR10] CDS gene_syn F17L21.15, F17L21_15, SPL10, squamosa promoter binding protein-like 10 gene SPL10 function In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL10 also controls lamina shape during vegetative development. go_component nucleus|GO:0005634||IEA go_component nucleus|GO:0005634||ISS go_process leaf shaping|GO:0010358|19880401|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|19880401|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|19880401|IDA product squamosa promoter binding protein-like 10 note squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 868 Blast hits to 867 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27370.4p transcript_id AT1G27370.4 protein_id AT1G27370.4p transcript_id AT1G27370.4
AT1G27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.5 AT1G27370.5 CDS squamosa promoter binding protein-like 10
AT1G27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.7 AT1G27370.7 CDS squamosa promoter binding protein-like 10
AT1G27370	chr1:009505713	0.0	C/9505713-9505966,9506082-9506203,9506333-9506997	AT1G27370.6 AT1G27370.6 CDS squamosa promoter binding protein-like 10
AT1G27380	chr1:009508903	0.0	C/9508903-9509069,9509538-9509625	AT1G27380.3 AT1G27380.3 CDS ROP-interactive CRIB motif-containing protein 2
At1g27380	chr1:009508903	0.0	C/9508903-9509069,9509538-9509675,9509797-9509827	AT1G27380.1 CDS ROP-interactive CRIB motif-containing protein 2 [TAIR10] CDS gene_syn F17L21.16, F17L21_16, RIC2, ROP-interactive CRIB motif-containing protein 2 gene RIC2 function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. go_component plasma membrane|GO:0005886|11752391|IDA go_process pollen tube growth|GO:0009860|11752391|IMP go_function molecular_function|GO:0003674||ND product ROP-interactive CRIB motif-containing protein 2 note ROP-interactive CRIB motif-containing protein 2 (RIC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); Has 111 Blast hits to 111 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27380.1p transcript_id AT1G27380.1 protein_id AT1G27380.1p transcript_id AT1G27380.1
At1g27380	chr1:009508903	0.0	C/9508903-9509069,9509538-9509675,9509797-9509827	AT1G27380.2 CDS ROP-interactive CRIB motif-containing protein 2 [TAIR10] CDS gene_syn F17L21.16, F17L21_16, RIC2, ROP-interactive CRIB motif-containing protein 2 gene RIC2 function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. go_component plasma membrane|GO:0005886|11752391|IDA go_process pollen tube growth|GO:0009860|11752391|IMP go_function molecular_function|GO:0003674||ND product ROP-interactive CRIB motif-containing protein 2 note ROP-interactive CRIB motif-containing protein 2 (RIC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); Has 111 Blast hits to 111 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27380.2p transcript_id AT1G27380.2 protein_id AT1G27380.2p transcript_id AT1G27380.2
AT1G27380	chr1:009508903	0.0	C/9508903-9509069,9509538-9509675,9509797-9509877,9509972-9510089	AT1G27380.4 AT1G27380.4 CDS ROP-interactive CRIB motif-containing protein 2
At1g27385	chr1:009510475	0.0	C/9510475-9510526,9510603-9510638,9510827-9510901,9511133-9511185,9511361-9511444,9511818-9511931,9512116-9512216,9512571-9512820	AT1G27385.4 CDS phosphoribosylformylglycinamidine synthase [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 79 Blast hits to 79 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G27385.4p transcript_id AT1G27385.4 protein_id AT1G27385.4p transcript_id AT1G27385.4
At1g27385	chr1:009510475	0.0	C/9510475-9510526,9510603-9510638,9511133-9511185,9511361-9511444,9511818-9511931,9512116-9512219,9512571-9512820	AT1G27385.3 CDS phosphoribosylformylglycinamidine synthase [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 77 Blast hits to 77 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G27385.3p transcript_id AT1G27385.3 protein_id AT1G27385.3p transcript_id AT1G27385.3
At1g27385	chr1:009511129	0.0	C/9511129-9511185,9511361-9511444,9511818-9511931,9512116-9512216,9512571-9512820	AT1G27385.2 CDS phosphoribosylformylglycinamidine synthase [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 76 Blast hits to 76 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G27385.2p transcript_id AT1G27385.2 protein_id AT1G27385.2p transcript_id AT1G27385.2
At1g27385	chr1:009511129	0.0	C/9511129-9511185,9511361-9511444,9511818-9511931,9512116-9512219,9512571-9512820	AT1G27385.1 CDS phosphoribosylformylglycinamidine synthase [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 76 Blast hits to 76 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G27385.1p transcript_id AT1G27385.1 protein_id AT1G27385.1p transcript_id AT1G27385.1
AT1G27390	chr1:009513469	0.0	C/9513469-9513600,9513772-9513876,9514051-9514098,9514190-9514359,9514446-9514455	AT1G27390.2 AT1G27390.2 CDS translocase outer membrane 20-2
At1g27390	chr1:009513469	0.0	C/9513469-9513600,9513772-9513876,9514051-9514098,9514190-9514359,9514446-9514524,9514814-9514912	AT1G27390.1 CDS translocase outer membrane 20-2 [TAIR10] CDS gene_syn F17L21.18, F17L21_18, TOM20-2, translocase outer membrane 20-2 gene TOM20-2 function Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins go_component cytosolic ribosome|GO:0022626|15821981|IDA go_function metal ion binding|GO:0046872|12606038|IDA go_component mitochondrion|GO:0005739|11743114|IDA go_component mitochondrion|GO:0005739|12606038|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component mitochondrion|GO:0005739|14730085|IDA go_component mitochondrial outer membrane|GO:0005741|14730085|IDA go_component mitochondrial outer membrane translocase complex|GO:0005742|11161051|IDA go_component mitochondrial inner membrane|GO:0005743|14730085|IDA go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|11161051|TAS go_process protein targeting to mitochondrion|GO:0006626|11161051|TAS go_process protein targeting to mitochondrion|GO:0006626|17981999|IMP go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|11161051|TAS product translocase outer membrane 20-2 note translocase outer membrane 20-2 (TOM20-2); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity, metal ion binding; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); BEST Arabidopsis thaliana protein match is: translocase of outer membrane 20 kDa subunit 3 (TAIR:AT3G27080.1); Has 98 Blast hits to 94 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27390.1p transcript_id AT1G27390.1 protein_id AT1G27390.1p transcript_id AT1G27390.1
At1g27400	chr1:009515230	0.0	W/9515230-9515232,9515329-9515365,9515484-9515524,9516004-9516234,9516319-9516421,9516512-9516579,9516678-9516725	AT1G27400.1 CDS Ribosomal protein L22p/L17e family protein [TAIR10] CDS gene_syn F17L21.19, F17L21_19 go_component vacuole|GO:0005773|15215502|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|15028209|IDA go_process translation|GO:0006412||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component ribosome|GO:0005840||ISS go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA go_process translation|GO:0006412||ISS go_function structural constituent of ribosome|GO:0003735||ISS product Ribosomal protein L22p/L17e family protein note Ribosomal protein L22p/L17e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: Ribosomal protein L22p/L17e family protein (TAIR:AT1G67430.1); Has 2094 Blast hits to 2094 proteins in 650 species: Archae - 321; Bacteria - 492; Metazoa - 519; Fungi - 182; Plants - 156; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink). protein_id AT1G27400.1p transcript_id AT1G27400.1 protein_id AT1G27400.1p transcript_id AT1G27400.1
At1g27410	chr1:009517226	0.0	W/9517226-9517517,9517601-9517803,9517887-9517994,9518078-9518743	AT1G27410.1 CDS DNA repair metallo-beta-lactamase family protein [TAIR10] CDS gene_syn F17L21.20, F17L21_20 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product DNA repair metallo-beta-lactamase family protein note DNA repair metallo-beta-lactamase family protein; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 810 Blast hits to 798 proteins in 218 species: Archae - 6; Bacteria - 54; Metazoa - 272; Fungi - 214; Plants - 166; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). protein_id AT1G27410.1p transcript_id AT1G27410.1 protein_id AT1G27410.1p transcript_id AT1G27410.1
At1g27420	chr1:009519108	0.0	W/9519108-9519544,9519845-9520068,9520141-9520520	AT1G27420.1 CDS Galactose oxidase/kelch repeat superfamily protein [TAIR10] CDS gene_syn F17L21.21, F17L21_21 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G67480.2); Has 8547 Blast hits to 5216 proteins in 315 species: Archae - 27; Bacteria - 542; Metazoa - 6188; Fungi - 6; Plants - 1209; Viruses - 272; Other Eukaryotes - 303 (source: NCBI BLink). protein_id AT1G27420.1p transcript_id AT1G27420.1 protein_id AT1G27420.1p transcript_id AT1G27420.1
At1g27430	chr1:009521045	0.0	C/9521045-9521304,9521389-9521534,9521656-9521701,9521827-9523983,9524131-9524841,9524988-9525086,9525185-9525275,9525390-9526220,9526390-9526460,9526862-9526928	AT1G27430.1 CDS GYF domain-containing protein [TAIR10] CDS gene_syn F17L21.22, F17L21_22 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product GYF domain-containing protein note GYF domain-containing protein; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G24300.1); Has 16615 Blast hits to 9086 proteins in 533 species: Archae - 0; Bacteria - 846; Metazoa - 6412; Fungi - 1516; Plants - 946; Viruses - 78; Other Eukaryotes - 6817 (source: NCBI BLink). protein_id AT1G27430.1p transcript_id AT1G27430.1 protein_id AT1G27430.1p transcript_id AT1G27430.1
AT1G27430	chr1:009521433	0.0	C/9521433-9521454,9521656-9521701,9521827-9523983,9524131-9524841,9524988-9525086,9525185-9525275,9525390-9526220,9526390-9526460,9526862-9526928	AT1G27430.3 AT1G27430.3 CDS GYF domain-containing protein
AT1G27430	chr1:009521718	0.0	C/9521718-9521728,9521827-9523983,9524131-9524841,9524988-9525086,9525185-9525275,9525390-9526220,9526390-9526460,9526862-9526928	AT1G27430.2 AT1G27430.2 CDS GYF domain-containing protein
At1g27435	chr1:009527956	0.0	C/9527956-9528054,9528668-9528814	AT1G27435.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27435.1p transcript_id AT1G27435.1 protein_id AT1G27435.1p transcript_id AT1G27435.1
At1g27440	chr1:009529265	0.0	C/9529265-9529778,9530025-9530266,9530520-9530908,9531120-9531213	AT1G27440.1 CDS Exostosin family protein [TAIR10] CDS gene_syn ATGUT1, F17L21.23, F17L21_23, GUT2, IRX10 gene GUT2 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_component membrane|GO:0016020||ISS go_process secondary cell wall biogenesis|GO:0009834|18980662|IMP go_process glucuronoxylan biosynthetic process|GO:0010417|18980662|IMP go_function catalytic activity|GO:0003824||ISS go_function glucuronoxylan glucuronosyltransferase activity|GO:0080116|18980662|IMP product Exostosin family protein note GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). protein_id AT1G27440.1p transcript_id AT1G27440.1 protein_id AT1G27440.1p transcript_id AT1G27440.1
At1g27450	chr1:009532042	0.0	W/9532042-9532201,9532353-9532502,9532593-9532703,9532871-9533038,9533365-9533514,9533599-9533657,9533751-9533807	AT1G27450.3 CDS adenine phosphoribosyl transferase 1 [TAIR10] CDS gene_syn ADENINE PHOSPHORIBOSYL TRANSFERASE 1, APT1, ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, ATAPT1, F17L21.24, F17L21_24, adenine phosphoribosyl transferase 1 gene APT1 function Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP. go_component cytosol|GO:0005829|12010467|IDA go_component plant-type cell wall|GO:0009505|16287169|IDA go_process adenine salvage|GO:0006168|12010467|TAS go_function adenine phosphoribosyltransferase activity|GO:0003999|12010467|IDA go_function adenine phosphoribosyltransferase activity|GO:0003999|8696367|IMP go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS product adenine phosphoribosyl transferase 1 note adenine phosphoribosyl transferase 1 (APT1); CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: adenine phosphoribosyl transferase 3 (TAIR:AT4G22570.1). protein_id AT1G27450.3p transcript_id AT1G27450.3 protein_id AT1G27450.3p transcript_id AT1G27450.3
At1g27450	chr1:009532042	0.0	W/9532042-9532201,9532401-9532502,9532593-9532703,9532871-9532963,9533365-9533514,9533599-9533657,9533751-9533807	AT1G27450.1 CDS adenine phosphoribosyl transferase 1 [TAIR10] CDS gene_syn ADENINE PHOSPHORIBOSYL TRANSFERASE 1, APT1, ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, ATAPT1, F17L21.24, F17L21_24, adenine phosphoribosyl transferase 1 gene APT1 function Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP. go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosol|GO:0005829|12010467|IDA go_component plant-type cell wall|GO:0009505|16287169|IDA go_process adenine salvage|GO:0006168|12010467|TAS go_function adenine phosphoribosyltransferase activity|GO:0003999|12010467|IDA go_function adenine phosphoribosyltransferase activity|GO:0003999|8696367|IMP go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS product adenine phosphoribosyl transferase 1 note adenine phosphoribosyl transferase 1 (APT1); FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: response to cadmium ion, adenine salvage; LOCATED IN: cytosol, chloroplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: adenine phosphoribosyl transferase 3 (TAIR:AT4G22570.1); Has 9277 Blast hits to 9277 proteins in 2485 species: Archae - 216; Bacteria - 6424; Metazoa - 180; Fungi - 181; Plants - 165; Viruses - 0; Other Eukaryotes - 2111 (source: NCBI BLink). protein_id AT1G27450.1p transcript_id AT1G27450.1 protein_id AT1G27450.1p transcript_id AT1G27450.1
At1g27450	chr1:009532421	0.0	W/9532421-9532502,9532593-9532703,9532871-9532963,9533365-9533514,9533599-9533657,9533751-9533807	AT1G27450.2 CDS adenine phosphoribosyl transferase 1 [TAIR10] CDS gene_syn ADENINE PHOSPHORIBOSYL TRANSFERASE 1, APT1, ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, ATAPT1, F17L21.24, F17L21_24, adenine phosphoribosyl transferase 1 gene APT1 function Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP. go_component plasma membrane|GO:0005886|17644812|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_component cytosol|GO:0005829|12010467|IDA go_component plant-type cell wall|GO:0009505|16287169|IDA go_process adenine salvage|GO:0006168|12010467|TAS go_function adenine phosphoribosyltransferase activity|GO:0003999|12010467|IDA go_function adenine phosphoribosyltransferase activity|GO:0003999|8696367|IMP go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS product adenine phosphoribosyl transferase 1 note adenine phosphoribosyl transferase 1 (APT1); FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: response to cadmium ion, adenine salvage; LOCATED IN: cytosol, chloroplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: adenine phosphoribosyl transferase 3 (TAIR:AT4G22570.1); Has 9362 Blast hits to 9362 proteins in 2524 species: Archae - 217; Bacteria - 6510; Metazoa - 180; Fungi - 181; Plants - 165; Viruses - 0; Other Eukaryotes - 2109 (source: NCBI BLink). protein_id AT1G27450.2p transcript_id AT1G27450.2 protein_id AT1G27450.2p transcript_id AT1G27450.2
AT1G27450	chr1:009532421	0.0	W/9532421-9532502,9532593-9532703,9532871-9532963,9533365-9533514,9533599-9533657,9533751-9533807	AT1G27450.4 AT1G27450.4 CDS adenine phosphoribosyl transferase 1
At1g27460	chr1:009534977	0.0	W/9534977-9535174,9535268-9535526,9535622-9536793,9536862-9537006,9537114-9537424	AT1G27460.1 CDS no pollen germination related 1 [TAIR10] CDS gene_syn F17L21.25, F17L21_25, NPGR1, no pollen germination related 1 gene NPGR1 function encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. go_component plasma membrane|GO:0005886|14506206|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function calmodulin binding|GO:0005516|11782485|ISS go_function calmodulin binding|GO:0005516|12928497|TAS product no pollen germination related 1 note no pollen germination related 1 (NPGR1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2043 Blast hits to 1708 proteins in 322 species: Archae - 185; Bacteria - 626; Metazoa - 573; Fungi - 23; Plants - 162; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink). protein_id AT1G27460.1p transcript_id AT1G27460.1 protein_id AT1G27460.1p transcript_id AT1G27460.1
AT1G27460	chr1:009534977	0.0	W/9534977-9535174,9535268-9535526,9535622-9536793,9536874-9537006,9537114-9537424	AT1G27460.3 AT1G27460.3 CDS no pollen germination related 1
AT1G27460	chr1:009534977	0.0	W/9534977-9535174,9535268-9535526,9535622-9536820	AT1G27460.2 AT1G27460.2 CDS no pollen germination related 1
At1g27461	chr1:009537948	0.0	C/9537948-9539012	AT1G27461.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G27461.1p transcript_id AT1G27461.1 protein_id AT1G27461.1p transcript_id AT1G27461.1
At1g27470	chr1:009540368	0.0	C/9540368-9540695,9540777-9541037,9541190-9541371,9541455-9542032,9542379-9542526,9542767-9542929,9543003-9543116,9543269-9543332,9543418-9543709,9543814-9543957,9544060-9544218	AT1G27470.1 CDS transducin family protein / WD-40 repeat family protein [TAIR10] CDS gene_syn F17L21.26, F17L21_26 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function nucleotide binding|GO:0000166||ISS product transducin family protein / WD-40 repeat family protein note transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G07410.1); Has 9350 Blast hits to 6259 proteins in 471 species: Archae - 14; Bacteria - 2955; Metazoa - 2262; Fungi - 2287; Plants - 792; Viruses - 0; Other Eukaryotes - 1040 (source: NCBI BLink). protein_id AT1G27470.1p transcript_id AT1G27470.1 protein_id AT1G27470.1p transcript_id AT1G27470.1
At1g27480	chr1:009544607	0.0	W/9544607-9545007,9545271-9546168	AT1G27480.1 CDS alpha/beta-Hydrolases superfamily protein [TAIR10] CDS gene_syn F17L21.27, F17L21_27 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_process lipid metabolic process|GO:0006629||IEA go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||IEA go_process lipid metabolic process|GO:0006629||ISS go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS product alpha/beta-Hydrolases superfamily protein note alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); Has 1076 Blast hits to 1070 proteins in 248 species: Archae - 0; Bacteria - 41; Metazoa - 667; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink). protein_id AT1G27480.1p transcript_id AT1G27480.1 protein_id AT1G27480.1p transcript_id AT1G27480.1
At1g27490	chr1:009546373	0.0	C/9546373-9546586,9546710-9546890,9546974-9547073	AT1G27490.1 CDS F-box and associated interaction domains-containing protein [TAIR10] CDS gene_syn F17L21.28, F17L21_28 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G23260.1); Has 90 Blast hits to 84 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27490.1p transcript_id AT1G27490.1 protein_id AT1G27490.1p transcript_id AT1G27490.1
At1g27500	chr1:009551629	0.0	C/9551629-9551830,9551904-9553654	AT1G27500.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F17L21.29, F17L21_29 go_function binding|GO:0005488||IEA go_component cellular_component|GO:0005575||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G27960.1); Has 11165 Blast hits to 5021 proteins in 667 species: Archae - 177; Bacteria - 3877; Metazoa - 4684; Fungi - 753; Plants - 379; Viruses - 0; Other Eukaryotes - 1295 (source: NCBI BLink). protein_id AT1G27500.1p transcript_id AT1G27500.1 protein_id AT1G27500.1p transcript_id AT1G27500.1
AT1G27500	chr1:009551629	0.0	C/9551629-9551830,9551904-9553680,9553903-9553909	AT1G27500.2 AT1G27500.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g27510	chr1:009554945	0.0	C/9554945-9555046,9555125-9555217,9555461-9555535,9555623-9555789,9555891-9556017,9556157-9556846,9557028-9557109,9557189-9557295,9557603-9557668,9557747-9557863,9557964-9558293	AT1G27510.1 CDS UvrB/UvrC domain protein (DUF3506) [TAIR10] CDS go_function DNA binding|GO:0003677||IEA go_function nuclease activity|GO:0004518||IEA go_component thylakoid membrane|GO:0042651|17540731|IDA go_process response to singlet oxygen|GO:0000304|17540731|IGI product Protein of unknown function (DUF3506) note FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT4G33630.2); Has 287 Blast hits to 280 proteins in 95 species: Archae - 0; Bacteria - 15; Metazoa - 66; Fungi - 43; Plants - 121; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT1G27510.1p transcript_id AT1G27510.1 protein_id AT1G27510.1p transcript_id AT1G27510.1
At1g27520	chr1:009558752	0.0	W/9558752-9558882,9558970-9559012,9559086-9559151,9559230-9559291,9559368-9559467,9559594-9559776,9560018-9560066,9560154-9560333,9560477-9560597,9560707-9560788,9560880-9560965,9561075-9561175,9561298-9561439,9561525-9561675,9561864-9562091	AT1G27520.1 CDS Glycosyl hydrolase family 47 protein [TAIR10] CDS gene_syn T17H3.2, T17H3_2 go_component endomembrane system|GO:0012505||IEA go_component membrane|GO:0016020||IEA go_function mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|GO:0004571||IEA go_function calcium ion binding|GO:0005509||IEA go_process protein amino acid N-linked glycosylation|GO:0006487||ISS go_function alpha-mannosidase activity|GO:0004559||ISS product Glycosyl hydrolase family 47 protein note Glycosyl hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 47 protein (TAIR:AT5G43710.1); Has 2179 Blast hits to 1853 proteins in 199 species: Archae - 0; Bacteria - 11; Metazoa - 788; Fungi - 990; Plants - 198; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink). protein_id AT1G27520.1p transcript_id AT1G27520.1 protein_id AT1G27520.1p transcript_id AT1G27520.1
At1g27530	chr1:009562761	0.0	C/9562761-9562890,9563409-9563470,9563555-9563887	AT1G27530.1 CDS ubiquitin-fold modifier-conjugating enzyme [TAIR10] CDS gene_syn T17H3.3, T17H3_3 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). protein_id AT1G27530.1p transcript_id AT1G27530.1 protein_id AT1G27530.1p transcript_id AT1G27530.1
AT1G27535	chr1:009564726	0.0	W/9564726-9565039,9565125-9565134	AT1G27535.1 AT1G27535.1 CDS phosphatidylinositol 3/4-kinase
At1g27540	chr1:009566608	0.0	C/9566608-9567733,9567824-9567849	AT1G27540.2 CDS F-box protein (DUF295) [TAIR10] CDS gene_syn T17H3.4, T17H3_4 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF295) note Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 278 Blast hits to 271 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27540.2p transcript_id AT1G27540.2 protein_id AT1G27540.2p transcript_id AT1G27540.2
At1g27540	chr1:009566608	0.0	C/9566608-9567849	AT1G27540.1 CDS F-box protein (DUF295) [TAIR10] CDS gene_syn T17H3.4, T17H3_4 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF295) note Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 275 Blast hits to 268 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27540.1p transcript_id AT1G27540.1 protein_id AT1G27540.1p transcript_id AT1G27540.1
AT1G27540	chr1:009566608	0.0	C/9566608-9567849	AT1G27540.3 AT1G27540.3 CDS F-box protein (DUF295)
At1g27550	chr1:009568813	0.0	C/9568813-9569045,9569186-9569330	AT1G27550.1 CDS F-box family protein [TAIR10] CDS gene_syn T17H3.5, T17H3_5 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box family protein note F-box family protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 105 Blast hits to 103 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27550.1p transcript_id AT1G27550.1 protein_id AT1G27550.1p transcript_id AT1G27550.1
AT1G27555	chr1:009570397	0.0	W/9570397-9570408,9570545-9570586,9570804-9570962	AT1G27555.1 AT1G27555.1 CDS hypothetical protein
At1g27560	chr1:009570855	0.0	C/9570855-9571987	AT1G27560.1 [TAIR10] pseudogene
At1g27565	chr1:009574710	0.0	W/9574710-9574740,9574866-9574978	AT1G27565.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52905.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27565.1p transcript_id AT1G27565.1 protein_id AT1G27565.1p transcript_id AT1G27565.1
At1g27570	chr1:009575538	0.0	W/9575538-9575752,9576162-9576178,9576260-9576354,9576707-9576805,9577051-9577346,9580382-9580490,9580878-9581006,9581414-9582376	AT1G27570.2 CDS phosphatidylinositol 3- and 4-kinase family protein [TAIR10] CDS gene_syn T17H3.7, T17H3_7 go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS product phosphatidylinositol 3- and 4-kinase family protein note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27590.1); Has 327 Blast hits to 327 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 285; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT1G27570.2p transcript_id AT1G27570.2 protein_id AT1G27570.2p transcript_id AT1G27570.2
At1g27570	chr1:009575538	0.0	W/9575538-9575752,9576162-9576321,9576707-9576805,9576944-9577055,9577184-9577346,9580382-9580490,9580878-9581006,9581414-9582376	AT1G27570.1 CDS phosphatidylinositol 3- and 4-kinase family protein [TAIR10] CDS gene_syn T17H3.7, T17H3_7 go_function binding|GO:0005488||IEA go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS product phosphatidylinositol 3- and 4-kinase family protein note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27590.1); Has 394 Blast hits to 394 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 2; Plants - 290; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G27570.1p transcript_id AT1G27570.1 protein_id AT1G27570.1p transcript_id AT1G27570.1
At1g27580	chr1:009589933	0.0	C/9589933-9590822,9590871-9591075	AT1G27580.1 CDS F-box protein (DUF295) [TAIR10] CDS gene_syn T22C5.1 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF295) note Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27540.1); Has 231 Blast hits to 231 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27580.1p transcript_id AT1G27580.1 protein_id AT1G27580.1p transcript_id AT1G27580.1
At1g27590	chr1:009592293	0.0	W/9592293-9592507,9592719-9592878,9593225-9593317,9593458-9593560,9593689-9593912	AT1G27590.1 [TAIR10] CDS gene_syn T22C5.2 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 109 Blast hits to 109 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G27590.1p transcript_id AT1G27590.1 protein_id AT1G27590.1p transcript_id AT1G27590.1
At1g27595	chr1:009592293	0.0	W/9592293-9592507,9592719-9592878,9593225-9593317,9593458-9593560,9593689-9593851,9595606-9595780,9596189-9596317,9596421-9596981,9597057-9597704,9597863-9597931,9598188-9598298,9598367-9598609,9598892-9598939,9599028-9599165,9599394-9599549,9599638-9599700,9599935-9600045,9600135-9600218,9600318-9600365,9600640-9600714,9600924-9601019,9601747-9601827,9601901-9601972,9602312-9602356,9602456-9602539,9602622-9602725,9602815-9602917	AT1G27595.1 CDS symplekin [TAIR10] CDS gene_syn T22C5.3 product unknown protein note CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). protein_id AT1G27595.1p transcript_id AT1G27595.1 protein_id AT1G27595.1p transcript_id AT1G27595.1
AT1G27595	chr1:009592293	0.0	W/9592293-9592507,9592719-9592878,9593225-9593317,9593458-9593560,9593689-9593912	AT1G27595.2 AT1G27595.2 CDS symplekin
At1g27600	chr1:009604083	0.0	C/9604083-9604253,9604344-9604593,9605118-9605881	AT1G27600.1 CDS Nucleotide-diphospho-sugar transferases superfamily protein [TAIR10] CDS gene_syn I9H, IRREGULAR XYLEM 9 Homolog, IRREGULAR XYLEM 9-LIKE, IRX9-L, T22C5.4 gene IRX9-L function Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9. go_component Golgi apparatus|GO:0005794|20335400|IDA go_process protein amino acid glycosylation|GO:0006486||ISS go_process secondary cell wall biogenesis|GO:0009834|20335400|IMP go_process glucuronoxylan biosynthetic process|GO:0010417|20335400|IMP go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function xylosyltransferase activity|GO:0042285|20335400|IMP product Nucleotide-diphospho-sugar transferases superfamily protein note IRREGULAR XYLEM 9-LIKE (IRX9-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G37090.1); Has 684 Blast hits to 682 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 425; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT1G27600.1p transcript_id AT1G27600.1 protein_id AT1G27600.1p transcript_id AT1G27600.1
At1g27600	chr1:009604083	0.0	C/9604083-9604253,9604344-9604593,9605118-9605881	AT1G27600.2 CDS Nucleotide-diphospho-sugar transferases superfamily protein [TAIR10] CDS gene_syn I9H, IRREGULAR XYLEM 9 Homolog, IRREGULAR XYLEM 9-LIKE, IRX9-L, T22C5.4 gene IRX9-L function Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9. go_component Golgi apparatus|GO:0005794|20335400|IDA go_process protein amino acid glycosylation|GO:0006486||ISS go_process secondary cell wall biogenesis|GO:0009834|20335400|IMP go_process glucuronoxylan biosynthetic process|GO:0010417|20335400|IMP go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS go_function xylosyltransferase activity|GO:0042285|20335400|IMP product Nucleotide-diphospho-sugar transferases superfamily protein note IRREGULAR XYLEM 9-LIKE (IRX9-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G37090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G27600.2p transcript_id AT1G27600.2 protein_id AT1G27600.2p transcript_id AT1G27600.2
At1g27610	chr1:009607111	0.0	C/9607111-9607305,9607428-9607577	AT1G27610.1 CDS hypothetical protein [TAIR10] CDS gene_syn T22C5.5 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27610.1p transcript_id AT1G27610.1 protein_id AT1G27610.1p transcript_id AT1G27610.1
AT1G27610	chr1:009607111	0.0	C/9607111-9607305,9607432-9607644	AT1G27610.2 AT1G27610.2 CDS hypothetical protein
AT1G27610	chr1:009607111	0.0	C/9607111-9607305,9607432-9607644	AT1G27610.3 AT1G27610.3 CDS hypothetical protein
At1g27620	chr1:009608444	0.0	W/9608444-9608863,9609524-9610432	AT1G27620.1 CDS HXXXD-type acyl-transferase family protein [TAIR10] CDS gene_syn T22C5.6 go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function transferase activity|GO:0016740||ISS product HXXXD-type acyl-transferase family protein note HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: synergid, pollen tube; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT2G40230.1); Has 2626 Blast hits to 2616 proteins in 147 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 66; Plants - 2554; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_id AT1G27620.1p transcript_id AT1G27620.1 protein_id AT1G27620.1p transcript_id AT1G27620.1
AT1G27630	chr1:009611647	0.0	W/9611647-9611876,9612590-9612671,9612926-9613060,9613142-9613314,9613392-9613537,9613621-9613700	AT1G27630.4 AT1G27630.4 CDS cyclin T 1;3
At1g27630	chr1:009611647	0.0	W/9611647-9611876,9612590-9612671,9612926-9613060,9613142-9613314,9613392-9613537,9613780-9613967	AT1G27630.1 CDS cyclin T 1;3 [TAIR10] CDS gene_syn CYCT1;3, T22C5.8, cyclin T 1;3 gene CYCT1;3 go_component nucleus|GO:0005634|15610358|IDA go_process regulation of cell cycle|GO:0051726||ISS go_function cyclin-dependent protein kinase activity|GO:0004693||ISS product cyclin T 1;3 note cyclin T 1;3 (CYCT1;3); CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 1569 Blast hits to 1569 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 847; Fungi - 342; Plants - 269; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). protein_id AT1G27630.1p transcript_id AT1G27630.1 protein_id AT1G27630.1p transcript_id AT1G27630.1
AT1G27630	chr1:009612615	0.0	W/9612615-9612671,9612926-9613060,9613142-9613314,9613392-9613537,9613780-9613967	AT1G27630.2 AT1G27630.2 CDS cyclin T 1;3
AT1G27630	chr1:009612615	0.0	W/9612615-9612671,9612926-9613060,9613142-9613314,9613392-9613537,9613780-9613967	AT1G27630.3 AT1G27630.3 CDS cyclin T 1;3
AT1G27630	chr1:009612615	0.0	W/9612615-9612671,9612926-9613060,9613142-9613314,9613392-9613537,9613780-9613967	AT1G27630.5 AT1G27630.5 CDS cyclin T 1;3
AT1G27630	chr1:009612615	0.0	W/9612615-9612671,9612926-9613060,9613142-9613314,9613392-9613537,9613780-9613967	AT1G27630.6 AT1G27630.6 CDS cyclin T 1;3
At1g27640	chr1:009614463	0.0	C/9614463-9614906	AT1G27640.1 CDS hypothetical protein [TAIR10] CDS gene_syn T22C5.9 function Putative role in leaf development. Comparison of SALK_123839C to Columbia under normal growth conditions resulted in a trend toward increased leaf length in the mutant (P=0.13; median 22 for mutant,17 for Columbia) (Ann Stapleton and Delita Pardue, 2009, personal communication). go_component cellular_component|GO:0005575||ND go_process leaf development|GO:0048366||IMP go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27640.1p transcript_id AT1G27640.1 protein_id AT1G27640.1p transcript_id AT1G27640.1
At1g27650	chr1:009615152	0.0	W/9615152-9616042	AT1G27650.1 CDS U2 snRNP auxiliary factor small subunit, putative [TAIR10] CDS gene_syn ATU2AF35A, T22C5.30 gene ATU2AF35A function U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||IEA go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634|16407443|IDA go_process photoperiodism, flowering|GO:0048573|16407443|IMP go_function RNA binding|GO:0003723||ISS product U2 snRNP auxiliary factor small subunit, putative note ATU2AF35A; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G42820.1); Has 5134 Blast hits to 4149 proteins in 301 species: Archae - 0; Bacteria - 77; Metazoa - 3143; Fungi - 618; Plants - 577; Viruses - 15; Other Eukaryotes - 704 (source: NCBI BLink). protein_id AT1G27650.1p transcript_id AT1G27650.1 protein_id AT1G27650.1p transcript_id AT1G27650.1
At1g27650	chr1:009615302	0.0	W/9615302-9616042	AT1G27650.2 CDS U2 snRNP auxiliary factor small subunit, putative [TAIR10] CDS gene_syn ATU2AF35A, T22C5.30 gene ATU2AF35A function U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function RNA binding|GO:0003723||IEA go_function zinc ion binding|GO:0008270||IEA go_component nucleus|GO:0005634|16407443|IDA go_process photoperiodism, flowering|GO:0048573|16407443|IMP go_function RNA binding|GO:0003723||ISS product U2 snRNP auxiliary factor small subunit, putative note ATU2AF35A; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G42820.1); Has 5086 Blast hits to 4097 proteins in 292 species: Archae - 0; Bacteria - 77; Metazoa - 3138; Fungi - 590; Plants - 568; Viruses - 11; Other Eukaryotes - 702 (source: NCBI BLink). protein_id AT1G27650.2p transcript_id AT1G27650.2 protein_id AT1G27650.2p transcript_id AT1G27650.2
At1g27660	chr1:009621701	0.0	W/9621701-9621846,9622202-9622919,9623972-9624103,9624330-9624395,9624669-9624734,9625326-9625385,9625493-9625666	AT1G27660.1 CDS basic helix-loop-helix (bHLH) DNA-binding superfamily protein [TAIR10] CDS gene_syn T22C5.11, T22C5_11 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449||IEA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G61660.3); Has 1680 Blast hits to 1555 proteins in 71 species: Archae - 0; Bacteria - 6; Metazoa - 95; Fungi - 29; Plants - 1158; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink). protein_id AT1G27660.1p transcript_id AT1G27660.1 protein_id AT1G27660.1p transcript_id AT1G27660.1
At1g27670	chr1:009627715	0.0	C/9627715-9628413	AT1G27670.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn T22C5.12, T22C5_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75360.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27670.1p transcript_id AT1G27670.1 protein_id AT1G27670.1p transcript_id AT1G27670.1
At1g27671	chr1:009629026	0.0	W/9629026-9629035,9630068-9630729	AT1G27671.1 [TAIR10] pseudogene
At1g27680	chr1:009631630	0.0	W/9631630-9631842,9632298-9632411,9632488-9632661,9632745-9632837,9632914-9632997,9633069-9633124,9633202-9633295,9633378-9633563,9633659-9633739,9633828-9633914,9634001-9634273,9634349-9634450	AT1G27680.1 CDS ADPGLC-PPase large subunit [TAIR10] CDS gene_syn ADPGLC-PPase large subunit, APL2, T22C5.13, T22C5_13 gene APL2 function ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. go_component cellular_component|GO:0005575||ND go_process starch biosynthetic process|GO:0019252|9841881|TAS go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|12748181|IDA go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|18614708|IDA go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|8292792|ISS product ADPGLC-PPase large subunit note ADPGLC-PPase large subunit (APL2); CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Glucose-1-phosphate adenylyltransferase family protein (TAIR:AT4G39210.1); Has 11860 Blast hits to 11712 proteins in 2161 species: Archae - 516; Bacteria - 8154; Metazoa - 62; Fungi - 36; Plants - 1704; Viruses - 0; Other Eukaryotes - 1388 (source: NCBI BLink). protein_id AT1G27680.1p transcript_id AT1G27680.1 protein_id AT1G27680.1p transcript_id AT1G27680.1
At1g27690	chr1:009636681	0.0	W/9636681-9637082,9637325-9637675,9637759-9638307	AT1G27690.1 CDS lipase, putative (DUF620) [TAIR10] CDS gene_syn T22C5.14, T22C5_14 go_process glycerol biosynthetic process|GO:0006114||IEA go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF620) note Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glycerol biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT3G19540.1); Has 217 Blast hits to 215 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27690.1p transcript_id AT1G27690.1 protein_id AT1G27690.1p transcript_id AT1G27690.1
At1g27695	chr1:009639214	0.0	W/9639214-9639253,9639329-9639373,9639701-9639733,9639845-9640002	AT1G27695.1 CDS glycine-rich protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product glycine-rich protein note glycine-rich protein; Has 5153 Blast hits to 886 proteins in 153 species: Archae - 32; Bacteria - 329; Metazoa - 3227; Fungi - 62; Plants - 1099; Viruses - 56; Other Eukaryotes - 348 (source: NCBI BLink). protein_id AT1G27695.1p transcript_id AT1G27695.1 protein_id AT1G27695.1p transcript_id AT1G27695.1
At1g27695	chr1:009639214	0.0	W/9639214-9639253,9639329-9639373,9639701-9639733,9639845-9640002	AT1G27695.2 CDS glycine-rich protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product glycine-rich protein note glycine-rich protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G27695.2p transcript_id AT1G27695.2 protein_id AT1G27695.2p transcript_id AT1G27695.2
At1g27700	chr1:009640394	0.0	C/9640394-9640419,9640519-9640705,9640800-9641288,9641365-9641479,9641676-9641752	AT1G27700.1 CDS Syntaxin/t-SNARE family protein [TAIR10] CDS gene_syn T22C5.15, T22C5_15 go_component nucleus|GO:0005634|14617066|IDA go_process vesicle-mediated transport|GO:0016192||IEA go_process Golgi vesicle transport|GO:0048193||IEA product Syntaxin/t-SNARE family protein note Syntaxin/t-SNARE family protein; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT4G30240.1); Has 134 Blast hits to 133 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27700.1p transcript_id AT1G27700.1 protein_id AT1G27700.1p transcript_id AT1G27700.1
At1g27710	chr1:009642550	0.0	W/9642550-9643042,9643061-9643188	AT1G27710.2 CDS Glycine-rich protein family [TAIR10] CDS gene_syn T22C5.16, T22C5_16 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Glycine-rich protein family note Glycine-rich protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 121905 Blast hits to 32009 proteins in 2055 species: Archae - 175; Bacteria - 44016; Metazoa - 38190; Fungi - 6725; Plants - 11081; Viruses - 1497; Other Eukaryotes - 20221 (source: NCBI BLink). protein_id AT1G27710.2p transcript_id AT1G27710.2 protein_id AT1G27710.2p transcript_id AT1G27710.2
At1g27710	chr1:009642550	0.0	W/9642550-9643188	AT1G27710.1 CDS Glycine-rich protein family [TAIR10] CDS gene_syn T22C5.16, T22C5_16 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Glycine-rich protein family note Glycine-rich protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 131655 Blast hits to 34196 proteins in 2131 species: Archae - 219; Bacteria - 45377; Metazoa - 41728; Fungi - 7680; Plants - 12236; Viruses - 1724; Other Eukaryotes - 22691 (source: NCBI BLink). protein_id AT1G27710.1p transcript_id AT1G27710.1 protein_id AT1G27710.1p transcript_id AT1G27710.1
AT1G27720	chr1:009643351	0.0	C/9643351-9643502,9643612-9643771,9643856-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646798	AT1G27720.5 AT1G27720.5 CDS TBP-associated factor 4B
AT1G27720	chr1:009643351	0.0	C/9643351-9643502,9643612-9643771,9643856-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646813	AT1G27720.3 AT1G27720.3 CDS TBP-associated factor 4B
AT1G27720	chr1:009643351	0.0	C/9643351-9643502,9643612-9643771,9643856-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646813	AT1G27720.7 AT1G27720.7 CDS TBP-associated factor 4B
AT1G27720	chr1:009643351	0.0	C/9643351-9643502,9643612-9643771,9643856-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646833,9647149-9647182	AT1G27720.9 AT1G27720.9 CDS TBP-associated factor 4B
AT1G27720	chr1:009643351	0.0	C/9643351-9643502,9643612-9643771,9643856-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646833,9647149-9647215,9647335-9647376	AT1G27720.4 AT1G27720.4 CDS TBP-associated factor 4B
At1g27720	chr1:009643351	0.0	C/9643351-9643502,9643612-9643771,9643856-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646878,9647149-9647215,9647335-9647376	AT1G27720.1 CDS TBP-associated factor 4B [TAIR10] CDS gene_syn T22C5.17, T22C5_17, TAF4, TAF4B, TBP-associated factor 4, TBP-associated factor 4B gene TAF4B go_component transcription factor TFIID complex|GO:0005669||IEA go_process transcription initiation|GO:0006352||IEA go_function transcription initiation factor activity|GO:0016986||IEA go_function transcription initiation factor activity|GO:0016986||ISS product TBP-associated factor 4B note TBP-associated factor 4B (TAF4B); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: TBP-associated factor 4 (TAIR:AT5G43130.1); Has 801 Blast hits to 726 proteins in 155 species: Archae - 1; Bacteria - 21; Metazoa - 244; Fungi - 130; Plants - 81; Viruses - 2; Other Eukaryotes - 322 (source: NCBI BLink). protein_id AT1G27720.1p transcript_id AT1G27720.1 protein_id AT1G27720.1p transcript_id AT1G27720.1
AT1G27720	chr1:009643841	0.0	C/9643841-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646813	AT1G27720.2 AT1G27720.2 CDS TBP-associated factor 4B
AT1G27720	chr1:009643841	0.0	C/9643841-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646813	AT1G27720.8 AT1G27720.8 CDS TBP-associated factor 4B
AT1G27720	chr1:009643841	0.0	C/9643841-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646833,9647149-9647215,9647335-9647376	AT1G27720.6 AT1G27720.6 CDS TBP-associated factor 4B
At1g27730	chr1:009648302	0.0	C/9648302-9648985	AT1G27730.1 CDS salt tolerance zinc finger [TAIR10] CDS gene_syn STZ, T22C5.18, T22C5_18, ZAT10, salt tolerance zinc finger gene STZ function Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress. go_component nucleus|GO:0005634|15333755|IDA go_process response to oxidative stress|GO:0006979|18156220|IMP go_process response to cold|GO:0009409|15333755|IEP go_process response to water deprivation|GO:0009414|15333755|IEP go_process response to water deprivation|GO:0009414|15333755|IMP go_process response to wounding|GO:0009611|16258017|IEP go_process response to high light intensity|GO:0009644|18156220|IEP go_process response to salt stress|GO:0009651|15333755|IEP go_process response to salt stress|GO:0009651|8662738|IEP go_process response to salt stress|GO:0009651|8662738|IGI go_process response to abscisic acid stimulus|GO:0009737|15333755|IEP go_process photoprotection|GO:0010117|18156220|IMP go_process response to chitin|GO:0010200|15923325|IEP go_process photosynthesis|GO:0015979|18156220|IMP go_process multicellular organism growth|GO:0035264|15333755|IMP go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|8662738|ISS go_function zinc ion binding|GO:0008270||ISS go_function transcription repressor activity|GO:0016564|15333755|IDA product salt tolerance zinc finger note salt tolerance zinc finger (STZ); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger of Arabidopsis thaliana 6 (TAIR:AT5G04340.1); Has 5350 Blast hits to 3982 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 4198; Fungi - 48; Plants - 937; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink). protein_id AT1G27730.1p transcript_id AT1G27730.1 protein_id AT1G27730.1p transcript_id AT1G27730.1
At1g27740	chr1:009654753	0.0	W/9654753-9655106,9655198-9655392,9655481-9655612,9655711-9655806	AT1G27740.1 CDS root hair defective 6-like 4 [TAIR10] CDS gene_syn RSL4, T22C5.19, T22C5_19, root hair defective 6-like 4 gene RSL4 function Basic helix-loop-helix (bHLH) transcription factor that is sufficient to promote postmitotic cell growth in root-hair cells. RSL4 is a direct transcriptional target of RHD6 go_component nucleus|GO:0005634||IEA go_process response to auxin stimulus|GO:0009733|20139979|IEP go_process cell growth|GO:0016049|20139979|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process positive regulation of transcription|GO:0045941|20139979|IMP go_process root hair initiation|GO:0048766|20139979|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|20139979|TAS product root hair defective 6-like 4 note root hair defective 6-like 4 (RSL4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root hair initiation, response to auxin stimulus, positive regulation of transcription, cell growth, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: trichoblast, root; EXPRESSED DURING: 5 root hair formation; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G43175.1); Has 2802 Blast hits to 2796 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 24; Plants - 2776; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G27740.1p transcript_id AT1G27740.1 protein_id AT1G27740.1p transcript_id AT1G27740.1
At1g27750	chr1:009657425	0.0	W/9657425-9657731,9658043-9658761,9658974-9660016,9660215-9660390,9660481-9661129,9661235-9661316,9661402-9661449,9661547-9661750	AT1G27750.1 CDS nucleic acid binding [TAIR10] CDS gene_syn T22C5.20, T22C5_20 go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product nucleic acid binding note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 48205 Blast hits to 29216 proteins in 1385 species: Archae - 84; Bacteria - 5862; Metazoa - 21406; Fungi - 6566; Plants - 7294; Viruses - 1352; Other Eukaryotes - 5641 (source: NCBI BLink). protein_id AT1G27750.1p transcript_id AT1G27750.1 protein_id AT1G27750.1p transcript_id AT1G27750.1
At1g27752	chr1:009662250	0.0	W/9662250-9662673,9662797-9662956,9663088-9663149,9663959-9664053,9664240-9664353,9664555-9664620,9665115-9665212,9665474-9665886,9666129-9667318	AT1G27752.1 CDS Ubiquitin system component Cue protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Ubiquitin system component Cue protein note Ubiquitin system component Cue protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 423 Blast hits to 397 proteins in 140 species: Archae - 0; Bacteria - 35; Metazoa - 153; Fungi - 103; Plants - 62; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). protein_id AT1G27752.1p transcript_id AT1G27752.1 protein_id AT1G27752.1p transcript_id AT1G27752.1
At1g27752	chr1:009663144	0.0	W/9663144-9663149,9663970-9664053,9664240-9664353,9664555-9664620,9665115-9665212,9665474-9665886,9666129-9667318	AT1G27752.2 CDS Ubiquitin system component Cue protein [TAIR10] CDS go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Ubiquitin system component Cue protein note Ubiquitin system component Cue protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G27752.2p transcript_id AT1G27752.2 protein_id AT1G27752.2p transcript_id AT1G27752.2
At1g27760	chr1:009668895	0.0	W/9668895-9668904,9669097-9669265,9669342-9669422,9669536-9669618,9669697-9669812,9669917-9670027,9670121-9670230,9670307-9670619,9670709-9670837,9670940-9671017,9671111-9671188,9671275-9671322	AT1G27760.3 CDS interferon-related developmental regulator family protein / IFRD protein family [TAIR10] CDS gene_syn ATSAT32, SALT-TOLERANCE 32, SAT32, T22C5.22, T22C5_22 gene SAT32 function Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress. go_function binding|GO:0005488||IEA go_component nucleus|GO:0005634|19210750|IDA go_component cytoplasm|GO:0005737|19210750|IDA go_process response to salt stress|GO:0009651|19210750|IMP product interferon-related developmental regulator family protein / IFRD protein family note SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator, N-terminal (InterPro:IPR007701), Interferon-related developmental regulator, C-terminal (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G27760.3p transcript_id AT1G27760.3 protein_id AT1G27760.3p transcript_id AT1G27760.3
At1g27760	chr1:009668895	0.0	W/9668895-9668904,9669097-9669265,9669354-9669422,9669536-9669618,9669697-9669812,9669917-9670027,9670121-9670230,9670307-9670619,9670709-9670837,9670940-9671017,9671111-9671188,9671275-9671322	AT1G27760.1 CDS interferon-related developmental regulator family protein / IFRD protein family [TAIR10] CDS gene_syn ATSAT32, SALT-TOLERANCE 32, SAT32, T22C5.22, T22C5_22 gene SAT32 function Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress. go_function binding|GO:0005488||IEA go_component nucleus|GO:0005634|19210750|IDA go_component cytoplasm|GO:0005737|19210750|IDA go_process response to salt stress|GO:0009651|19210750|IMP product interferon-related developmental regulator family protein / IFRD protein family note SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator, N-terminal (InterPro:IPR007701), Interferon-related developmental regulator, C-terminal (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 353 Blast hits to 353 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 61; Plants - 99; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT1G27760.1p transcript_id AT1G27760.1 protein_id AT1G27760.1p transcript_id AT1G27760.1
At1g27760	chr1:009669120	0.0	W/9669120-9669265,9669354-9669422,9669536-9669618,9669697-9669812,9669917-9670027,9670121-9670230,9670307-9670619,9670709-9670837,9670940-9671017,9671111-9671188,9671275-9671322	AT1G27760.2 CDS interferon-related developmental regulator family protein / IFRD protein family [TAIR10] CDS gene_syn ATSAT32, SALT-TOLERANCE 32, SAT32, T22C5.22, T22C5_22 gene SAT32 function Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress. go_function binding|GO:0005488||IEA go_component nucleus|GO:0005634|19210750|IDA go_component cytoplasm|GO:0005737|19210750|IDA go_process response to salt stress|GO:0009651|19210750|IMP product interferon-related developmental regulator family protein / IFRD protein family note SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator, N-terminal (InterPro:IPR007701), Interferon-related developmental regulator, C-terminal (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G27760.2p transcript_id AT1G27760.2 protein_id AT1G27760.2p transcript_id AT1G27760.2
At1g27770	chr1:009671912	0.0	C/9671912-9672160,9672250-9672548,9672656-9672827,9672948-9673106,9673281-9673339,9673562-9675232,9675309-9675363,9675834-9676010	AT1G27770.2 CDS autoinhibited Ca2+-ATPase 1 [TAIR10] CDS gene_syn ACA1, CA2+-ATPASE, PEA1, PLASTID ENVELOPE ATPASE 1, T22C5.23, T22C5_23, autoinhibited Ca2+-ATPase 1 gene ACA1 function Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor. go_component plasma membrane|GO:0005886|17317660|IDA go_process ATP biosynthetic process|GO:0006754||IEA go_process cation transport|GO:0006812||IEA go_process calcium ion transport|GO:0006816||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_component chloroplast inner membrane|GO:0009706|8234257|IDA go_component chloroplast inner membrane|GO:0009706|9009223|TAS go_function calcium channel activity|GO:0005262|9009223|TAS go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS go_function calcium-transporting ATPase activity|GO:0005388|8234257|ISS go_function calcium-transporting ATPase activity|GO:0005388|9009223|TAS go_function calcium-transporting ATPase activity|GO:0005388||ISS go_function calmodulin binding|GO:0005516|11782485|TAS product autoinhibited Ca2+-ATPase 1 note autoinhibited Ca2+-ATPase 1 (ACA1); FUNCTIONS IN: calcium channel activity, calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: cation transport, calcium ion transport, ATP biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 48793 Blast hits to 33205 proteins in 3149 species: Archae - 856; Bacteria - 30326; Metazoa - 5666; Fungi - 3781; Plants - 2732; Viruses - 4; Other Eukaryotes - 5428 (source: NCBI BLink). protein_id AT1G27770.2p transcript_id AT1G27770.2 protein_id AT1G27770.2p transcript_id AT1G27770.2
At1g27770	chr1:009671912	0.0	C/9671912-9672160,9672250-9672548,9672656-9672827,9672948-9673106,9673281-9675232,9675309-9675363,9675834-9676010	AT1G27770.1 CDS autoinhibited Ca2+-ATPase 1 [TAIR10] CDS gene_syn ACA1, CA2+-ATPASE, PEA1, PLASTID ENVELOPE ATPASE 1, T22C5.23, T22C5_23, autoinhibited Ca2+-ATPase 1 gene ACA1 function Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor. go_component plasma membrane|GO:0005886|17317660|IDA go_process ATP biosynthetic process|GO:0006754||IEA go_process cation transport|GO:0006812||IEA go_process calcium ion transport|GO:0006816||IEA go_process metabolic process|GO:0008152||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_component chloroplast inner membrane|GO:0009706|8234257|IDA go_component chloroplast inner membrane|GO:0009706|9009223|TAS go_function calcium channel activity|GO:0005262|9009223|TAS go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS go_function calcium-transporting ATPase activity|GO:0005388|8234257|ISS go_function calcium-transporting ATPase activity|GO:0005388|9009223|TAS go_function calcium-transporting ATPase activity|GO:0005388||ISS go_function calmodulin binding|GO:0005516|11782485|TAS product autoinhibited Ca2+-ATPase 1 note autoinhibited Ca2+-ATPase 1 (ACA1); FUNCTIONS IN: calcium channel activity, calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 48177 Blast hits to 34612 proteins in 3273 species: Archae - 915; Bacteria - 33514; Metazoa - 4128; Fungi - 2798; Plants - 2164; Viruses - 3; Other Eukaryotes - 4655 (source: NCBI BLink). protein_id AT1G27770.1p transcript_id AT1G27770.1 protein_id AT1G27770.1p transcript_id AT1G27770.1
AT1G27770	chr1:009671912	0.0	C/9671912-9672160,9672250-9672548,9672656-9672827,9672948-9673106,9673281-9675232,9675309-9675363,9675834-9676010	AT1G27770.4 AT1G27770.4 CDS autoinhibited Ca2+-ATPase 1
AT1G27770	chr1:009671912	0.0	C/9671912-9672160,9672250-9672548,9672656-9672827,9672948-9673106,9673281-9675275	AT1G27770.3 AT1G27770.3 CDS autoinhibited Ca2+-ATPase 1
At1g27780	chr1:009677043	0.0	W/9677043-9677166,9677402-9678330,9678412-9678604,9678693-9679291,9679364-9679489,9679576-9679728,9679839-9679964,9680037-9680126,9680231-9680320,9680403-9680462,9680558-9680659,9680726-9680985,9681072-9681156,9681262-9681915,9682167-9682982	AT1G27780.1 [TAIR10] mRNA
At1g27780	chr1:009677043	0.0	W/9677043-9682982	AT1G27780 [TAIR10] TE pseudo gene_syn T22C5.24, T22C5_24 note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34740.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)
At1g27790	chr1:009683681	0.0	W/9683681-9684043	AT1G27790.1 [TAIR10] mRNA
At1g27790	chr1:009683681	0.0	W/9683681-9684043	AT1G27790 [TAIR10] TE pseudo gene_syn T22C5.25, T22C5_25 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24380.1)
At1g27800	chr1:009684838	0.0	W/9684838-9685473	AT1G27800.1 [TAIR10] mRNA
At1g27800	chr1:009684838	0.0	W/9684838-9685473	AT1G27800 [TAIR10] TE pseudo gene_syn T22C5.26, T22C5_26 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24370.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)
At1g27810	chr1:009686068	0.0	C/9686068-9686284,9686371-9686440,9686522-9686789,9686879-9687016	AT1G27810.1 [TAIR10] mRNA
At1g27810	chr1:009686068	0.0	C/9686068-9687016	AT1G27810 [TAIR10] TE pseudo gene_syn T22C5.27, T22C5_27 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34710.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD33040.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)
At1g27815	chr1:009687757	0.0	C/9687757-9690536	AT1G27815.1 [TAIR10] mRNA
At1g27815	chr1:009687757	0.0	C/9687757-9690536	AT1G27815 [TAIR10] TE pseudo gene_syn T22C5.31 note Transposable element gene, Mutator-like transposase family, has a 3.0e-77 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)
At1g27820	chr1:009691628	0.0	W/9691628-9692560	AT1G27820.1 CDS Polynucleotidyl transferase, ribonuclease H-like superfamily protein [TAIR10] CDS gene_syn T22C5.28, T22C5_28 go_component nucleus|GO:0005634||IEA go_function nucleic acid binding|GO:0003676||IEA go_process RNA modification|GO:0009451||ISS go_function ribonuclease activity|GO:0004540||ISS product Polynucleotidyl transferase, ribonuclease H-like superfamily protein note Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27890.1); Has 872 Blast hits to 871 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 148; Plants - 353; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). protein_id AT1G27820.1p transcript_id AT1G27820.1 protein_id AT1G27820.1p transcript_id AT1G27820.1
At1g27840	chr1:009693332	0.0	C/9693332-9693376,9693484-9693555,9693665-9693754,9693839-9693996,9694636-9694873,9695131-9695312,9695482-9695641,9695721-9695981,9696108-9696257	AT1G27840.3 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn ATCSA-1, F28L5.15, F28L5_15 gene ATCSA-1 function Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity. go_component nucleus|GO:0005634|20128879|IDA go_component heterotrimeric G-protein complex|GO:0005834||ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process DNA repair|GO:0006281|20128879|IMP go_process response to UV-B|GO:0010224|20128879|IMP go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note ATCSA-1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G19750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G27840.3p transcript_id AT1G27840.3 protein_id AT1G27840.3p transcript_id AT1G27840.3
At1g27840	chr1:009693332	0.0	C/9693332-9693376,9693484-9693555,9693665-9693754,9693842-9693996,9694636-9694873,9695131-9695312,9695482-9695641,9695721-9695981,9696108-9696257	AT1G27840.1 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn ATCSA-1, F28L5.15, F28L5_15 gene ATCSA-1 function Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity. go_component nucleus|GO:0005634|20128879|IDA go_component heterotrimeric G-protein complex|GO:0005834||ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process DNA repair|GO:0006281|20128879|IMP go_process response to UV-B|GO:0010224|20128879|IMP go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note ATCSA-1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G19750.1); Has 28727 Blast hits to 16574 proteins in 608 species: Archae - 26; Bacteria - 4830; Metazoa - 10091; Fungi - 6796; Plants - 3577; Viruses - 0; Other Eukaryotes - 3407 (source: NCBI BLink). protein_id AT1G27840.1p transcript_id AT1G27840.1 protein_id AT1G27840.1p transcript_id AT1G27840.1
At1g27840	chr1:009693332	0.0	C/9693332-9693376,9693484-9693555,9693665-9693754,9693842-9693996,9694636-9694873,9695131-9695312,9695482-9695641,9695892-9695981,9696108-9696257	AT1G27840.2 CDS Transducin/WD40 repeat-like superfamily protein [TAIR10] CDS gene_syn ATCSA-1, F28L5.15, F28L5_15 gene ATCSA-1 function Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity. go_component nucleus|GO:0005634|20128879|IDA go_component heterotrimeric G-protein complex|GO:0005834||ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS go_process DNA repair|GO:0006281|20128879|IMP go_process response to UV-B|GO:0010224|20128879|IMP go_function nucleotide binding|GO:0000166||ISS product Transducin/WD40 repeat-like superfamily protein note ATCSA-1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G19750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G27840.2p transcript_id AT1G27840.2 protein_id AT1G27840.2p transcript_id AT1G27840.2
At1g27850	chr1:009699265	0.0	W/9699265-9699460,9699595-9699691,9699976-9700093,9700193-9700924,9701279-9703133,9703253-9703701	AT1G27850.1 CDS RUN/FYVE domain protein, putative [TAIR10] CDS gene_syn F28L5.11, F28L5_11 go_component plasma membrane|GO:0005886|17317660|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). protein_id AT1G27850.1p transcript_id AT1G27850.1 protein_id AT1G27850.1p transcript_id AT1G27850.1
At1g27860	chr1:009704558	0.0	C/9704558-9704883,9704981-9705065,9705152-9705234,9705378-9705570,9705718-9705813,9706152-9706238	AT1G27860.1 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn F28L5.13, F28L5_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G28500.1); Has 192 Blast hits to 191 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27860.1p transcript_id AT1G27860.1 protein_id AT1G27860.1p transcript_id AT1G27860.1
At1g27870	chr1:009706657	0.0	C/9706657-9707298	AT1G27870.1 CDS Polynucleotidyl transferase, ribonuclease H-like superfamily protein [TAIR10] CDS gene_syn F28L5.12, F28L5_12 go_function nucleic acid binding|GO:0003676||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Polynucleotidyl transferase, ribonuclease H-like superfamily protein note Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G33160.1); Has 396 Blast hits to 396 proteins in 20 species: Archae - 3; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G27870.1p transcript_id AT1G27870.1 protein_id AT1G27870.1p transcript_id AT1G27870.1
At1g27880	chr1:009708940	0.0	W/9708940-9709965,9710061-9710114,9710261-9710373,9710478-9710693,9710770-9710848,9710966-9711019,9711101-9711175,9711293-9711346,9711444-9711488,9711575-9711669,9711755-9711884,9712026-9712124,9712244-9712299,9712397-9712499,9712947-9713075,9713161-9713330,9713484-9713508,9713601-9713716,9713805-9713901	AT1G27880.1 CDS DEAD/DEAH box RNA helicase family protein [TAIR10] CDS gene_syn F28L5.4, F28L5_4 go_process DNA recombination|GO:0006310||IEA go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_component cellular_component|GO:0005575||ND go_function ATP binding|GO:0005524||ISS go_function ATP-dependent helicase activity|GO:0008026||ISS product DEAD/DEAH box RNA helicase family protein note DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT4G35740.1); Has 41244 Blast hits to 39032 proteins in 2984 species: Archae - 762; Bacteria - 21282; Metazoa - 5401; Fungi - 4173; Plants - 3671; Viruses - 588; Other Eukaryotes - 5367 (source: NCBI BLink). protein_id AT1G27880.1p transcript_id AT1G27880.1 protein_id AT1G27880.1p transcript_id AT1G27880.1
AT1G27880	chr1:009708940	0.0	W/9708940-9709965,9710061-9710114,9710261-9710373,9710478-9710693,9710770-9710848,9710966-9711019,9711101-9711175,9711293-9711346,9711444-9711488,9711575-9711669,9711755-9711884,9712026-9712124,9712244-9712299,9712397-9712499,9712947-9713075,9713161-9713330,9713484-9713658	AT1G27880.2 AT1G27880.2 CDS DEAD/DEAH box RNA helicase family protein
At1g27890	chr1:009714136	0.0	C/9714136-9715044	AT1G27890.1 CDS Polynucleotidyl transferase, ribonuclease H-like superfamily protein [TAIR10] CDS gene_syn F28L5.5 go_component nucleus|GO:0005634||IEA go_function nucleic acid binding|GO:0003676||IEA go_process RNA modification|GO:0009451||ISS go_function ribonuclease activity|GO:0004540||ISS product Polynucleotidyl transferase, ribonuclease H-like superfamily protein note Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27820.1); Has 867 Blast hits to 866 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 146; Plants - 350; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). protein_id AT1G27890.1p transcript_id AT1G27890.1 protein_id AT1G27890.1p transcript_id AT1G27890.1
At1g27900	chr1:009715615	0.0	C/9715615-9715762,9715871-9716046,9716179-9716339,9716538-9716607,9716957-9717107,9717221-9717344,9717428-9717520,9717696-9717910,9718221-9718307,9718861-9718952,9719073-9719189,9719282-9719334,9719456-9719673,9719752-9719856,9719949-9720041,9720147-9720346	AT1G27900.1 CDS RNA helicase family protein [TAIR10] CDS gene_syn F13K9.28, F13K9_28 go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function ATP-dependent RNA helicase activity|GO:0004004||ISS product RNA helicase family protein note RNA helicase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 10760 Blast hits to 9882 proteins in 1732 species: Archae - 26; Bacteria - 3503; Metazoa - 2392; Fungi - 1270; Plants - 841; Viruses - 1056; Other Eukaryotes - 1672 (source: NCBI BLink). protein_id AT1G27900.1p transcript_id AT1G27900.1 protein_id AT1G27900.1p transcript_id AT1G27900.1
AT1G27900	chr1:009716340	0.0	C/9716340-9716398,9716538-9716607,9716957-9717107,9717221-9717344,9717428-9717520,9717696-9717910,9718221-9718307,9718861-9718952,9719073-9719189,9719282-9719334,9719456-9719673,9719752-9719856,9719949-9720041,9720147-9720346	AT1G27900.2 AT1G27900.2 CDS RNA helicase family protein
AT1G27900	chr1:009716533	0.0	C/9716533-9716607,9716957-9717107,9717221-9717344,9717428-9717520,9717696-9717910,9718221-9718307,9718861-9718952,9719073-9719189,9719282-9719334,9719456-9719673,9719752-9719856,9719949-9720041,9720147-9720346	AT1G27900.3 AT1G27900.3 CDS RNA helicase family protein
At1g27910	chr1:009720962	0.0	C/9720962-9721766,9721982-9723138,9723277-9723384,9723478-9723663,9723925-9723975	AT1G27910.1 CDS plant U-box 45 [TAIR10] CDS gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 45, ATPUB45, F13K9.2, F13K9_2, PUB45, plant U-box 45 gene PUB45 function Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. go_component ubiquitin ligase complex|GO:0000151||IEA go_process protein ubiquitination|GO:0016567|14657406|IDA go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA product plant U-box 45 note plant U-box 45 (PUB45); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 2726 Blast hits to 2661 proteins in 214 species: Archae - 0; Bacteria - 25; Metazoa - 192; Fungi - 159; Plants - 2120; Viruses - 3; Other Eukaryotes - 227 (source: NCBI BLink). protein_id AT1G27910.1p transcript_id AT1G27910.1 protein_id AT1G27910.1p transcript_id AT1G27910.1
At1g27920	chr1:009727106	0.0	W/9727106-9727189,9727293-9727496,9727616-9727873,9727995-9728207,9728365-9728520,9728615-9728771,9728860-9729011,9729093-9729180,9729293-9729366,9729452-9729526,9729621-9729848	AT1G27920.1 CDS microtubule-associated protein 65-8 [TAIR10] CDS gene_syn F13K9.3, F13K9_3, MAP65-8, microtubule-associated protein 65-8 gene MAP65-8 go_component spindle|GO:0005819|15469496|IDA go_component microtubule|GO:0005874|15469496|IDA go_component phragmoplast|GO:0009524|15469496|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product microtubule-associated protein 65-8 note microtubule-associated protein 65-8 (MAP65-8); CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: microtubule-associated protein 65-2 (TAIR:AT4G26760.1); Has 2013 Blast hits to 1836 proteins in 335 species: Archae - 36; Bacteria - 203; Metazoa - 697; Fungi - 206; Plants - 352; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink). protein_id AT1G27920.1p transcript_id AT1G27920.1 protein_id AT1G27920.1p transcript_id AT1G27920.1
AT1G27920	chr1:009727106	0.0	W/9727106-9727189,9727293-9727496,9727616-9727873,9727995-9728207,9728365-9728520,9728615-9728771,9728860-9729032	AT1G27920.2 AT1G27920.2 CDS microtubule-associated protein 65-8
At1g27921	chr1:009728124	0.0	C/9728124-9728488,9728565-9728644,9728759-9728882,9729434-9729487,9729600-9729747,9729856-9729979,9730229-9730331	AT1G27921.1 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G27920 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G27921.1
At1g27921	chr1:009729093	0.0	C/9729093-9729134,9729434-9729487,9729600-9729747,9729856-9729979,9730229-9730331	AT1G27921.2 [TAIR10] ncRNA function Potential natural antisense gene, locus overlaps with AT1G27920 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT1G27921.2
At1g27930	chr1:009731510	0.0	C/9731510-9732379	AT1G27930.1 CDS glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [TAIR10] CDS gene_syn F13K9.4, F13K9_4 function Function unknown. Interacts with eIF3. go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|19704582|IPI product Protein of unknown function (DUF579) note FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G67330.1); Has 251 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). protein_id AT1G27930.1p transcript_id AT1G27930.1 protein_id AT1G27930.1p transcript_id AT1G27930.1
AT1G27930	chr1:009731510	0.0	C/9731510-9732379	AT1G27930.2 AT1G27930.2 CDS glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
AT1G27930	chr1:009731510	0.0	C/9731510-9732379	AT1G27930.3 AT1G27930.3 CDS glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
AT1G27940	chr1:009733597	0.0	C/9733597-9734802,9734882-9735123,9735227-9736010,9736088-9736628,9736699-9736958,9737149-9737211	AT1G27940.2 AT1G27940.2 CDS P-glycoprotein 13
At1g27940	chr1:009733597	0.0	C/9733597-9734802,9734882-9735123,9735227-9736010,9736088-9736628,9736699-9736958,9737149-9737349,9737421-9737596,9737692-9737746,9737857-9738129	AT1G27940.1 CDS P-glycoprotein 13 [TAIR10] CDS gene_syn F13K9.5, F13K9_5, P-glycoprotein 13, PGP13 gene PGP13 go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product P-glycoprotein 13 note P-glycoprotein 13 (PGP13); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 14 (TAIR:AT1G28010.1); Has 859453 Blast hits to 396267 proteins in 4182 species: Archae - 14855; Bacteria - 669138; Metazoa - 18079; Fungi - 12603; Plants - 9342; Viruses - 61; Other Eukaryotes - 135375 (source: NCBI BLink). protein_id AT1G27940.1p transcript_id AT1G27940.1 protein_id AT1G27940.1p transcript_id AT1G27940.1
At1g27950	chr1:009740740	0.0	W/9740740-9741091,9741762-9741991	AT1G27950.1 CDS glycosylphosphatidylinositol-anchored lipid protein transfer 1 [TAIR10] CDS gene_syn F13K9.6, F13K9_6, LTPG1, glycosylphosphatidylinositol-anchored lipid protein transfer 1 gene LTPG1 function Encodes LTPG1, a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain. Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition, but no significant changes on total wax and cutin monomer loads are seen. go_component plasma membrane|GO:0005886|17644812|IDA go_component anchored to plasma membrane|GO:0046658|12805588|IDA go_component plasma membrane|GO:0005886|16618929|IDA go_component plasma membrane|GO:0005886|19321705|IDA go_component anchored to membrane|GO:0031225|12068095|TAS go_component anchored to membrane|GO:0031225|12805588|TAS go_process lipid transport|GO:0006869|19321705|IMP go_function molecular_function|GO:0003674||ND product glycosylphosphatidylinositol-anchored lipid protein transfer 1 note glycosylphosphatidylinositol-anchored lipid protein transfer 1 (LTPG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 597 Blast hits to 593 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 597; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G27950.1p transcript_id AT1G27950.1 protein_id AT1G27950.1p transcript_id AT1G27950.1
AT1G27960	chr1:009742359	0.0	C/9742359-9742616,9742975-9743187,9743480-9743968,9744058-9744495	AT1G27960.3 AT1G27960.3 CDS evolutionarily conserved C-terminal region 9
At1g27960	chr1:009742359	0.0	C/9742359-9742616,9742975-9743187,9743480-9743968,9744058-9744498,9744601-9744662,9745127-9745184,9745263-9745309,9745597-9745648	AT1G27960.1 CDS evolutionarily conserved C-terminal region 9 [TAIR10] CDS gene_syn ECT9, F13K9.7, F13K9_7, evolutionarily conserved C-terminal region 9 gene ECT9 function encodes a protein whose C-terminal region is similar to ECT1 and ECT2, which bind to CIPK1. go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product evolutionarily conserved C-terminal region 9 note evolutionarily conserved C-terminal region 9 (ECT9); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 5 (TAIR:AT3G13060.2); Has 956 Blast hits to 946 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 120; Plants - 329; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). protein_id AT1G27960.1p transcript_id AT1G27960.1 protein_id AT1G27960.1p transcript_id AT1G27960.1
AT1G27960	chr1:009743333	0.0	C/9743333-9743968,9744058-9744498,9744601-9744662,9745127-9745184,9745263-9745309,9745597-9745648	AT1G27960.2 AT1G27960.2 CDS evolutionarily conserved C-terminal region 9
At1g27970	chr1:009746921	0.0	W/9746921-9747226,9747713-9747771,9748267-9748306	AT1G27970.2 CDS nuclear transport factor 2B [TAIR10] CDS gene_syn F13K9.26, F13K9_26, NTF2B, nuclear transport factor 2B gene NTF2B function Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component intracellular|GO:0005622||ISS go_component nucleus|GO:0005634||ISS go_component nuclear envelope|GO:0005635|16428596|IDA go_process protein import into nucleus|GO:0006606|16428596|IGI go_process protein import into nucleus|GO:0006606||ISS go_process nucleocytoplasmic transport|GO:0006913|16428596|IGI go_function Ran GTPase binding|GO:0008536|16428596|IGI go_function Ran GTPase binding|GO:0008536|16428596|IPI go_function protein transporter activity|GO:0008565||ISS product nuclear transport factor 2B note nuclear transport factor 2B (NTF2B); FUNCTIONS IN: protein transporter activity, Ran GTPase binding; INVOLVED IN: nucleocytoplasmic transport, protein import into nucleus; LOCATED IN: nuclear envelope, intracellular, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2A (TAIR:AT1G27310.1); Has 947 Blast hits to 947 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 435; Fungi - 217; Plants - 201; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). protein_id AT1G27970.2p transcript_id AT1G27970.2 protein_id AT1G27970.2p transcript_id AT1G27970.2
At1g27970	chr1:009746921	0.0	W/9746921-9747226,9747713-9747787	AT1G27970.1 CDS nuclear transport factor 2B [TAIR10] CDS gene_syn F13K9.26, F13K9_26, NTF2B, nuclear transport factor 2B gene NTF2B function Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport. go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component intracellular|GO:0005622||ISS go_component nucleus|GO:0005634||ISS go_component nuclear envelope|GO:0005635|16428596|IDA go_process protein import into nucleus|GO:0006606|16428596|IGI go_process protein import into nucleus|GO:0006606||ISS go_process nucleocytoplasmic transport|GO:0006913|16428596|IGI go_function Ran GTPase binding|GO:0008536|16428596|IGI go_function Ran GTPase binding|GO:0008536|16428596|IPI go_function protein transporter activity|GO:0008565||ISS product nuclear transport factor 2B note nuclear transport factor 2B (NTF2B); FUNCTIONS IN: protein transporter activity, Ran GTPase binding; INVOLVED IN: nucleocytoplasmic transport, protein import into nucleus; LOCATED IN: nuclear envelope, intracellular, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2A (TAIR:AT1G27310.1); Has 1018 Blast hits to 1018 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 232; Plants - 204; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). protein_id AT1G27970.1p transcript_id AT1G27970.1 protein_id AT1G27970.1p transcript_id AT1G27970.1
At1g27980	chr1:009748812	0.0	W/9748812-9749023,9749128-9749173,9749573-9749724,9749833-9749892,9750021-9750245,9750332-9750473,9750681-9750731,9750833-9750924,9751205-9751331,9751640-9751655,9751740-9751847,9751943-9751997,9752075-9752221,9752315-9752393,9752496-9752618	AT1G27980.1 CDS dihydrosphingosine phosphate lyase [TAIR10] CDS gene_syn ATDPL1, DPL1, F13K9.8, F13K9_8, dihydrosphingosine phosphate lyase gene DPL1 go_component membrane|GO:0016020|17432890|IDA go_function catalytic activity|GO:0003824||IEA go_function carboxy-lyase activity|GO:0016831||IEA go_function pyridoxal phosphate binding|GO:0030170||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_component endoplasmic reticulum|GO:0005783|17635905|IDA go_component endoplasmic reticulum|GO:0005783|18643979|IDA go_process cellular amino acid metabolic process|GO:0006520||ISS go_process sphingolipid catabolic process|GO:0030149|17635905|IMP go_function carboxy-lyase activity|GO:0016831||ISS product dihydrosphingosine phosphate lyase note dihydrosphingosine phosphate lyase (DPL1); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: sphingolipid catabolic process, cellular amino acid metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase (TAIR:AT5G17330.1); Has 6215 Blast hits to 6205 proteins in 1686 species: Archae - 244; Bacteria - 4383; Metazoa - 292; Fungi - 491; Plants - 296; Viruses - 3; Other Eukaryotes - 506 (source: NCBI BLink). protein_id AT1G27980.1p transcript_id AT1G27980.1 protein_id AT1G27980.1p transcript_id AT1G27980.1
At1g27990	chr1:009752799	0.0	C/9752799-9753008,9753101-9753389,9753603-9753919	AT1G27990.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F13K9.9, F13K9_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 86 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G27990.1p transcript_id AT1G27990.1 protein_id AT1G27990.1p transcript_id AT1G27990.1
At1g28000	chr1:009756674	0.0	C/9756674-9757582,9757690-9757947	AT1G28000.1 CDS Pentatricopeptide repeat (PPR) superfamily protein [TAIR10] CDS gene_syn F13K9.10, F13K9_10 go_component mitochondrion|GO:0005739||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G28000.1p transcript_id AT1G28000.1 protein_id AT1G28000.1p transcript_id AT1G28000.1
AT1G28005	chr1:009756927	0.0	W/9756927-9757182,9757459-9757586	AT1G28005.1 AT1G28005.1 CDS hypothetical protein
At1g28002	chr1:009759212	0.0	W/9759212-9759542,9759618-9760165	AT1G28002.1 [TAIR10] pseudogene
At1g28007	chr1:009762024	0.0	W/9762024-9762209	AT1G28007.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G28007.1p transcript_id AT1G28007.1 protein_id AT1G28007.1p transcript_id AT1G28007.1
At1g28010	chr1:009763436	0.0	W/9763436-9763711,9763790-9763844,9763930-9764105,9764177-9764377,9764566-9764825,9764906-9765446,9765524-9766310,9766392-9766633,9766712-9767917	AT1G28010.1 CDS P-glycoprotein 14 [TAIR10] CDS gene_syn ABCB14, ATABCB14, F13K9.11, F13K9_11, P-glycoprotein 14, PGP14 gene PGP14 go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product P-glycoprotein 14 note P-glycoprotein 14 (PGP14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 13 (TAIR:AT1G27940.1); Has 862231 Blast hits to 397322 proteins in 4187 species: Archae - 14893; Bacteria - 671155; Metazoa - 18443; Fungi - 12341; Plants - 9398; Viruses - 47; Other Eukaryotes - 135954 (source: NCBI BLink). protein_id AT1G28010.1p transcript_id AT1G28010.1 protein_id AT1G28010.1p transcript_id AT1G28010.1
At1g28020	chr1:009768395	0.0	C/9768395-9768636,9768722-9768859,9768949-9770140,9770228-9770377,9771041-9771157	AT1G28020.1 CDS Tetratricopeptide repeat (TPR)-like superfamily protein [TAIR10] CDS gene_syn F13K9.12, F13K9_12 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Tetratricopeptide repeat (TPR)-like superfamily protein note Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G11380.1); Has 2264 Blast hits to 1608 proteins in 100 species: Archae - 2; Bacteria - 23; Metazoa - 10; Fungi - 2; Plants - 2192; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). protein_id AT1G28020.1p transcript_id AT1G28020.1 protein_id AT1G28020.1p transcript_id AT1G28020.1
AT1G28020	chr1:009768621	0.0	C/9768621-9768859,9768949-9770140,9770228-9770377,9771041-9771157	AT1G28020.2 AT1G28020.2 CDS Tetratricopeptide repeat (TPR)-like superfamily protein
At1g28030	chr1:009771793	0.0	W/9771793-9772175,9772661-9772997,9773097-9773345	AT1G28030.1 CDS 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [TAIR10] CDS gene_syn F13K9.13, F13K9_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302|16299181|ISS product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G52820.1); Has 5089 Blast hits to 5024 proteins in 625 species: Archae - 0; Bacteria - 336; Metazoa - 25; Fungi - 264; Plants - 4092; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink). protein_id AT1G28030.1p transcript_id AT1G28030.1 protein_id AT1G28030.1p transcript_id AT1G28030.1
At1g28040	chr1:009773580	0.0	C/9773580-9773992,9774424-9774910	AT1G28040.1 CDS RING/U-box superfamily protein [TAIR10] CDS gene_syn F13K9.14, F13K9_14 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46494.1); Has 8456 Blast hits to 8431 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 1947; Fungi - 512; Plants - 4886; Viruses - 19; Other Eukaryotes - 1092 (source: NCBI BLink). protein_id AT1G28040.1p transcript_id AT1G28040.1 protein_id AT1G28040.1p transcript_id AT1G28040.1
At1g28050	chr1:009775768	0.0	C/9775768-9775870,9775984-9776228,9776513-9776680,9776872-9777657	AT1G28050.1 CDS B-box type zinc finger protein with CCT domain [TAIR10] CDS gene_syn F13K9.15, F13K9_15 go_component intracellular|GO:0005622||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product B-box type zinc finger protein with CCT domain note B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT2G33500.2); Has 3090 Blast hits to 2261 proteins in 129 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 2990; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). protein_id AT1G28050.1p transcript_id AT1G28050.1 protein_id AT1G28050.1p transcript_id AT1G28050.1
At1g28060	chr1:009779167	0.0	W/9779167-9779643,9779757-9780038,9780130-9780507,9780590-9780784,9780882-9781036,9781613-9782486	AT1G28060.1 CDS Pre-mRNA-splicing factor 3 [TAIR10] CDS gene_syn F13K9.16, F13K9_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Pre-mRNA-splicing factor 3 note Pre-mRNA-splicing factor 3; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT3G55930.1); Has 22923 Blast hits to 12760 proteins in 707 species: Archae - 18; Bacteria - 1085; Metazoa - 11525; Fungi - 3053; Plants - 1999; Viruses - 93; Other Eukaryotes - 5150 (source: NCBI BLink). protein_id AT1G28060.1p transcript_id AT1G28060.1 protein_id AT1G28060.1p transcript_id AT1G28060.1
AT1G28060	chr1:009779167	0.0	W/9779167-9779643,9779757-9780038,9780130-9780507,9780590-9780784,9780882-9781036,9781613-9782486	AT1G28060.2 AT1G28060.2 CDS Pre-mRNA-splicing factor 3
AT1G28060	chr1:009779167	0.0	W/9779167-9779643,9779757-9780038,9780130-9780507,9780590-9780784,9780882-9781036,9781613-9782486	AT1G28060.3 AT1G28060.3 CDS Pre-mRNA-splicing factor 3
At1g28070	chr1:009783082	0.0	W/9783082-9783264,9783517-9783864	AT1G28070.1 CDS ATP-dependent RNA helicase, putative [TAIR10] CDS gene_syn F13K9.17, F13K9_17 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33510.1); Has 85 Blast hits to 77 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28070.1p transcript_id AT1G28070.1 protein_id AT1G28070.1p transcript_id AT1G28070.1
AT1G28080	chr1:009789826	0.0	W/9789826-9790565,9790674-9790724,9790834-9790906,9791454-9791498	AT1G28080.2 AT1G28080.2 CDS RING finger protein
At1g28080	chr1:009789826	0.0	W/9789826-9790565,9790674-9790724,9790834-9790918	AT1G28080.1 CDS RING finger protein [TAIR10] CDS gene_syn F13K9.18, F13K9_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product RING finger protein note RING finger protein; BEST Arabidopsis thaliana protein match is: RING finger protein (TAIR:AT5G13250.1); Has 133 Blast hits to 133 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28080.1p transcript_id AT1G28080.1 protein_id AT1G28080.1p transcript_id AT1G28080.1
At1g28090	chr1:009795826	0.0	W/9795826-9795948,9796060-9796135,9796246-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798034,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.1 CDS Polynucleotide adenylyltransferase family protein [TAIR10] CDS gene_syn F13K9.19, F13K9_19 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_function nucleotidyltransferase activity|GO:0016779||IEA go_component cellular_component|GO:0005575||ND go_process RNA processing|GO:0006396||ISS go_function RNA binding|GO:0003723||ISS product Polynucleotide adenylyltransferase family protein note Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9340 Blast hits to 9332 proteins in 2600 species: Archae - 2; Bacteria - 6572; Metazoa - 129; Fungi - 227; Plants - 128; Viruses - 8; Other Eukaryotes - 2274 (source: NCBI BLink). protein_id AT1G28090.1p transcript_id AT1G28090.1 protein_id AT1G28090.1p transcript_id AT1G28090.1
AT1G28090	chr1:009795826	0.0	W/9795826-9795948,9796060-9796135,9796246-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798103	AT1G28090.5 AT1G28090.5 CDS Polynucleotide adenylyltransferase family protein
At1g28090	chr1:009796045	0.0	W/9796045-9796135,9796246-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798034,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.2 CDS Polynucleotide adenylyltransferase family protein [TAIR10] CDS gene_syn F13K9.19, F13K9_19 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_function nucleotidyltransferase activity|GO:0016779||IEA go_component cellular_component|GO:0005575||ND go_process RNA processing|GO:0006396||ISS go_function RNA binding|GO:0003723||ISS product Polynucleotide adenylyltransferase family protein note Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28090.2p transcript_id AT1G28090.2 protein_id AT1G28090.2p transcript_id AT1G28090.2
AT1G28090	chr1:009796045	0.0	W/9796045-9796135,9796246-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.4 AT1G28090.4 CDS Polynucleotide adenylyltransferase family protein
At1g28090	chr1:009796236	0.0	W/9796236-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798034,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.3 CDS Polynucleotide adenylyltransferase family protein [TAIR10] CDS gene_syn F13K9.19, F13K9_19 go_process RNA processing|GO:0006396||IEA go_function RNA binding|GO:0003723||IEA go_function nucleotidyltransferase activity|GO:0016779||IEA go_component cellular_component|GO:0005575||ND go_process RNA processing|GO:0006396||ISS go_function RNA binding|GO:0003723||ISS product Polynucleotide adenylyltransferase family protein note Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9376 Blast hits to 9368 proteins in 2610 species: Archae - 2; Bacteria - 6608; Metazoa - 130; Fungi - 222; Plants - 128; Viruses - 8; Other Eukaryotes - 2278 (source: NCBI BLink). protein_id AT1G28090.3p transcript_id AT1G28090.3 protein_id AT1G28090.3p transcript_id AT1G28090.3
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803676,9803771-9803775	AT1G28100.5 CDS hypothetical protein [TAIR10] CDS gene_syn F13K9.27, F13K9_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G28100.5p transcript_id AT1G28100.5 protein_id AT1G28100.5p transcript_id AT1G28100.5
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.1 CDS hypothetical protein [TAIR10] CDS gene_syn F13K9.27, F13K9_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G28100.1p transcript_id AT1G28100.1 protein_id AT1G28100.1p transcript_id AT1G28100.1
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.2 CDS hypothetical protein [TAIR10] CDS gene_syn F13K9.27, F13K9_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G28100.2p transcript_id AT1G28100.2 protein_id AT1G28100.2p transcript_id AT1G28100.2
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.3 CDS hypothetical protein [TAIR10] CDS gene_syn F13K9.27, F13K9_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G28100.3p transcript_id AT1G28100.3 protein_id AT1G28100.3p transcript_id AT1G28100.3
AT1G28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.6 AT1G28100.6 CDS hypothetical protein
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802978,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.4 CDS hypothetical protein [TAIR10] CDS gene_syn F13K9.27, F13K9_27 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G28100.4p transcript_id AT1G28100.4 protein_id AT1G28100.4p transcript_id AT1G28100.4
At1g28110	chr1:009804153	0.0	C/9804153-9804302,9804382-9804499,9804577-9804669,9804771-9804895,9804990-9805271,9805347-9805426,9805517-9805609,9806215-9806310,9806394-9806495,9806586-9806832	AT1G28110.1 CDS serine carboxypeptidase-like 45 [TAIR10] CDS gene_syn F13K9.20, F13K9_20, SCPL45, serine carboxypeptidase-like 45 gene SCPL45 go_process proteolysis|GO:0006508||IEA go_function serine-type carboxypeptidase activity|GO:0004185||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_process proteolysis|GO:0006508||ISS go_function serine-type carboxypeptidase activity|GO:0004185||ISS product serine carboxypeptidase-like 45 note serine carboxypeptidase-like 45 (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 46 (TAIR:AT2G33530.1); Has 3718 Blast hits to 3657 proteins in 439 species: Archae - 0; Bacteria - 354; Metazoa - 639; Fungi - 854; Plants - 1450; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink). protein_id AT1G28110.1p transcript_id AT1G28110.1 protein_id AT1G28110.1p transcript_id AT1G28110.1
At1g28110	chr1:009804153	0.0	C/9804153-9804302,9804382-9804499,9804577-9804669,9804771-9804895,9804990-9805271,9805347-9805426,9805517-9805609,9806215-9806310,9806394-9806495,9806586-9806832	AT1G28110.2 CDS serine carboxypeptidase-like 45 [TAIR10] CDS gene_syn F13K9.20, F13K9_20, SCPL45, serine carboxypeptidase-like 45 gene SCPL45 go_process proteolysis|GO:0006508||IEA go_function serine-type carboxypeptidase activity|GO:0004185||IEA go_component plant-type cell wall|GO:0009505|16287169|IDA go_process proteolysis|GO:0006508||ISS go_function serine-type carboxypeptidase activity|GO:0004185||ISS product serine carboxypeptidase-like 45 note serine carboxypeptidase-like 45 (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 46 (TAIR:AT2G33530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28110.2p transcript_id AT1G28110.2 protein_id AT1G28110.2p transcript_id AT1G28110.2
At1g28120	chr1:009813219	0.0	C/9813219-9813242,9813325-9813588,9813853-9813953,9814027-9814076,9814223-9814275,9814373-9814495,9814629-9814712,9814792-9814857,9814988-9815143	AT1G28120.1 CDS ubiquitin thioesterase otubain-like protein [TAIR10] CDS gene_syn F13K9.21, F13K9_21 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). protein_id AT1G28120.1p transcript_id AT1G28120.1 protein_id AT1G28120.1p transcript_id AT1G28120.1
At1g28130	chr1:009825431	0.0	W/9825431-9825726,9825836-9825937,9826348-9827189,9827294-9827883	AT1G28130.1 CDS Auxin-responsive GH3 family protein [TAIR10] CDS gene_syn F3H9.21, F3H9_21, GH3.17 gene GH3.17 function encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. go_component nucleus|GO:0005634|15610358|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_process response to auxin stimulus|GO:0009733|15659623|IMP go_process response to auxin stimulus|GO:0009733||ISS go_process auxin homeostasis|GO:0010252|15659623|TAS go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA product Auxin-responsive GH3 family protein note GH3.17; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1405 Blast hits to 1296 proteins in 239 species: Archae - 0; Bacteria - 491; Metazoa - 54; Fungi - 2; Plants - 672; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink). protein_id AT1G28130.1p transcript_id AT1G28130.1 protein_id AT1G28130.1p transcript_id AT1G28130.1
At1g28130	chr1:009826379	0.0	W/9826379-9827189,9827294-9827883	AT1G28130.2 CDS Auxin-responsive GH3 family protein [TAIR10] CDS gene_syn F3H9.21, F3H9_21, GH3.17 gene GH3.17 function encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. go_component nucleus|GO:0005634|15610358|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_process response to auxin stimulus|GO:0009733|15659623|IMP go_process response to auxin stimulus|GO:0009733||ISS go_process auxin homeostasis|GO:0010252|15659623|TAS go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA product Auxin-responsive GH3 family protein note GH3.17; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1092 Blast hits to 1087 proteins in 203 species: Archae - 0; Bacteria - 311; Metazoa - 52; Fungi - 2; Plants - 653; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). protein_id AT1G28130.2p transcript_id AT1G28130.2 protein_id AT1G28130.2p transcript_id AT1G28130.2
At1g28135	chr1:009829332	0.0	W/9829332-9829487	AT1G28135.1 CDS hypothetical protein [TAIR10] CDS gene_syn F3H9.27, F3H9_27 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28135.1p transcript_id AT1G28135.1 protein_id AT1G28135.1p transcript_id AT1G28135.1
At1g28140	chr1:009833029	0.0	C/9833029-9833127,9833247-9833345,9833512-9833582,9833660-9834023,9834181-9834390	AT1G28140.1 CDS integral membrane family protein [TAIR10] CDS gene_syn F3H9.20, F3H9_20 go_component chloroplast|GO:0009507|18431481|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301, transmembrane (InterPro:IPR019275); Has 140 Blast hits to 140 proteins in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G28140.1p transcript_id AT1G28140.1 protein_id AT1G28140.1p transcript_id AT1G28140.1
At1g28150	chr1:009835122	0.0	C/9835122-9835304,9835567-9835683,9835771-9835842	AT1G28150.1 CDS hypothetical protein [TAIR10] CDS gene_syn F13K9.24 go_component plastoglobule|GO:0010287|16414959|IDA go_component plastoglobule|GO:0010287|16461379|IDA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28150.1p transcript_id AT1G28150.1 protein_id AT1G28150.1p transcript_id AT1G28150.1
AT1G28150	chr1:009835122	0.0	C/9835122-9835304,9835567-9835683,9835771-9835842	AT1G28150.2 AT1G28150.2 CDS hypothetical protein
At1g28160	chr1:009839387	0.0	W/9839387-9840124	AT1G28160.1 CDS Integrase-type DNA-binding superfamily protein [TAIR10] CDS gene_syn F3H9.18, F3H9_18 function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9687012|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS product Integrase-type DNA-binding superfamily protein note Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G13910.1); Has 5516 Blast hits to 5465 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 5459; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). protein_id AT1G28160.1p transcript_id AT1G28160.1 protein_id AT1G28160.1p transcript_id AT1G28160.1
At1g28170	chr1:009841332	0.0	W/9841332-9842312	AT1G28170.1 CDS sulphotransferase 7 [TAIR10] CDS gene_syn F3H9.17, F3H9_17, SOT7, sulphotransferase 7 gene SOT7 go_function sulfotransferase activity|GO:0008146||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function sulfotransferase activity|GO:0008146||ISS product sulphotransferase 7 note sulphotransferase 7 (SOT7); FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sulfotransferase domain (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45070.1); Has 2760 Blast hits to 2722 proteins in 189 species: Archae - 0; Bacteria - 204; Metazoa - 1687; Fungi - 1; Plants - 539; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink). protein_id AT1G28170.1p transcript_id AT1G28170.1 protein_id AT1G28170.1p transcript_id AT1G28170.1
At1g28180	chr1:009843087	0.0	C/9843087-9844234,9844309-9845026	AT1G28180.1 CDS DEAD-box ATP-dependent RNA helicase-like protein [TAIR10] CDS gene_syn F3H9.16 go_function nucleic acid binding|GO:0003676||IEA go_function helicase activity|GO:0004386||IEA go_function ATP binding|GO:0005524||IEA go_function ATP-dependent helicase activity|GO:0008026||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G33730.1); Has 41935 Blast hits to 41307 proteins in 3020 species: Archae - 790; Bacteria - 20440; Metazoa - 6535; Fungi - 4421; Plants - 2648; Viruses - 20; Other Eukaryotes - 7081 (source: NCBI BLink). protein_id AT1G28180.1p transcript_id AT1G28180.1 protein_id AT1G28180.1p transcript_id AT1G28180.1
At1g28190	chr1:009847015	0.0	C/9847015-9847815	AT1G28190.1 CDS hypothetical protein [TAIR10] CDS gene_syn F3H9.15, F3H9_15 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT1G28190.1p transcript_id AT1G28190.1 protein_id AT1G28190.1p transcript_id AT1G28190.1
At1g28200	chr1:009850395	0.0	C/9850395-9850574,9851204-9851475,9851888-9851989,9852075-9852300	AT1G28200.1 CDS FH interacting protein 1 [TAIR10] CDS gene_syn F3H9.14, F3H9_14, FH INTERACTING PROTEIN 1, FH interacting protein 1, FIP1 gene FIP1 function VirF-interacting protein FIP1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product FH interacting protein 1 note FH interacting protein 1 (FIP1); CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT2G22475.1); Has 416 Blast hits to 413 proteins in 43 species: Archae - 4; Bacteria - 12; Metazoa - 9; Fungi - 9; Plants - 369; Viruses - 1; Other Eukaryotes - 12 (source: NCBI BLink). protein_id AT1G28200.1p transcript_id AT1G28200.1 protein_id AT1G28200.1p transcript_id AT1G28200.1
AT1G28200	chr1:009850395	0.0	C/9850395-9850574,9851204-9851475,9851888-9851989,9852075-9852300	AT1G28200.2 AT1G28200.2 CDS FH interacting protein 1
At1g28210	chr1:009854598	0.0	W/9854598-9854615,9854736-9854793,9855214-9855255,9855349-9855440,9855565-9855648,9855735-9855773,9855857-9855967,9856045-9856080,9856199-9856286,9856713-9856777,9856877-9856939,9857026-9857098,9857496-9857587,9858021-9858092,9858649-9858705,9858850-9858898,9858979-9859048,9859371-9859460,9859857-9859884	AT1G28210.1 CDS DNAJ heat shock family protein [TAIR10] CDS gene_syn ATJ, ATJ1, F3H9.13, F3H9_13 gene ATJ1 function DnaJ homolog AtJ1 (atj) go_process protein folding|GO:0006457||IEA go_process response to heat|GO:0009408||IEA go_function ATP binding|GO:0005524||IEA go_function heat shock protein binding|GO:0031072||IEA go_function unfolded protein binding|GO:0051082||IEA go_component mitochondrion|GO:0005739|8790294|ISS go_process protein folding|GO:0006457||ISS product DNAJ heat shock family protein note ATJ1; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ (InterPro:IPR003095), Chaperone DnaJ (InterPro:IPR012724); BEST Arabidopsis thaliana protein match is: gametophytic factor 2 (TAIR:AT5G48030.1); Has 28161 Blast hits to 27196 proteins in 3463 species: Archae - 195; Bacteria - 10792; Metazoa - 4386; Fungi - 2267; Plants - 2523; Viruses - 17; Other Eukaryotes - 7981 (source: NCBI BLink). protein_id AT1G28210.1p transcript_id AT1G28210.1 protein_id AT1G28210.1p transcript_id AT1G28210.1
At1g28210	chr1:009854598	0.0	W/9854598-9854615,9854736-9854793,9855214-9855255,9855349-9855440,9855565-9855648,9855735-9855773,9855857-9855967,9856045-9856080,9856199-9856286,9856713-9856777,9856877-9856939,9857026-9857098,9857496-9857587,9858021-9858092,9858649-9858705,9858850-9858898,9858979-9859048,9859371-9859460,9859893-9859977	AT1G28210.2 CDS DNAJ heat shock family protein [TAIR10] CDS gene_syn ATJ, ATJ1, F3H9.13, F3H9_13 gene ATJ1 function DnaJ homolog AtJ1 (atj) go_process protein folding|GO:0006457||IEA go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA go_function heat shock protein binding|GO:0031072||IEA go_function unfolded protein binding|GO:0051082||IEA go_component mitochondrion|GO:0005739|8790294|ISS go_process protein folding|GO:0006457||ISS product DNAJ heat shock family protein note ATJ1; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Zinc finger, CCHC-type (InterPro:IPR001878), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: gametophytic factor 2 (TAIR:AT5G48030.1); Has 28171 Blast hits to 27206 proteins in 3463 species: Archae - 195; Bacteria - 10792; Metazoa - 4387; Fungi - 2267; Plants - 2533; Viruses - 17; Other Eukaryotes - 7980 (source: NCBI BLink). protein_id AT1G28210.2p transcript_id AT1G28210.2 protein_id AT1G28210.2p transcript_id AT1G28210.2
AT1G28210	chr1:009854598	0.0	W/9854598-9854615,9854736-9854793,9855214-9855255,9855349-9855440,9855565-9855648,9855735-9855773,9855857-9855967,9856045-9856080,9856199-9856286,9856713-9856777,9856877-9856939,9857026-9857098,9857496-9857587,9858021-9858092,9858649-9858705,9858850-9858898,9858979-9859048,9859371-9859464	AT1G28210.3 AT1G28210.3 CDS DNAJ heat shock family protein
At1g28220	chr1:009860303	0.0	C/9860303-9860668,9860745-9861434	AT1G28220.1 CDS purine permease 3 [TAIR10] CDS gene_syn ATPUP3, F3H9.12, F3H9_12, PUP3, purine permease 3 gene PUP3 function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. go_component membrane|GO:0016020|10662864|TAS go_process purine transport|GO:0006863|10662864|TAS go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS go_function purine transmembrane transporter activity|GO:0005345||ISS product purine permease 3 note purine permease 3 (PUP3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 2 (TAIR:AT2G33750.2); Has 782 Blast hits to 771 proteins in 171 species: Archae - 1; Bacteria - 157; Metazoa - 97; Fungi - 2; Plants - 399; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). protein_id AT1G28220.1p transcript_id AT1G28220.1 protein_id AT1G28220.1p transcript_id AT1G28220.1
At1g28230	chr1:009862200	0.0	C/9862200-9862562,9863847-9864554	AT1G28230.1 CDS purine permease 1 [TAIR10] CDS gene_syn ATPUP1, F3H9.22, F3H9_22, PUP1, PURINE PERMEASE 1, purine permease 1 gene PUP1 function Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. go_component integral to plasma membrane|GO:0005887|10662864|ISS go_process purine transport|GO:0006863|12662305|IDA go_process cytokinin transport|GO:0010184|12662305|IDA go_function purine transmembrane transporter activity|GO:0005345|12662305|IDA go_function purine transmembrane transporter activity|GO:0005345||ISS go_function purine nucleoside transmembrane transporter activity|GO:0015211|12662305|IDA product purine permease 1 note purine permease 1 (PUP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 3 (TAIR:AT1G28220.1); Has 617 Blast hits to 607 proteins in 89 species: Archae - 4; Bacteria - 97; Metazoa - 10; Fungi - 14; Plants - 377; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink). protein_id AT1G28230.1p transcript_id AT1G28230.1 protein_id AT1G28230.1p transcript_id AT1G28230.1
At1g28240	chr1:009868521	0.0	C/9868521-9868751,9868850-9869049,9869138-9869325,9869701-9869804,9870163-9870362,9870459-9870568,9870645-9870858,9871033-9871290,9871558-9871798	AT1G28240.1 CDS strawberry notch protein (DUF616) [TAIR10] CDS gene_syn F3H9.11, F3H9_11 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF616) note Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G53040.2); Has 322 Blast hits to 322 proteins in 41 species: Archae - 14; Bacteria - 34; Metazoa - 0; Fungi - 4; Plants - 225; Viruses - 1; Other Eukaryotes - 44 (source: NCBI BLink). protein_id AT1G28240.1p transcript_id AT1G28240.1 protein_id AT1G28240.1p transcript_id AT1G28240.1
At1g28250	chr1:009874296	0.0	W/9874296-9874364,9874450-9874607,9875094-9875175	AT1G28250.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F3H9.10, F3H9_10 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28250.1p transcript_id AT1G28250.1 protein_id AT1G28250.1p transcript_id AT1G28250.1
At1g28260	chr1:009875776	0.0	C/9875776-9877561,9877685-9877866,9877955-9878077,9878150-9878650,9878732-9878782	AT1G28260.1 CDS Telomerase activating protein Est1 [TAIR10] CDS gene_syn F3H9.9, F3H9_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Telomerase activating protein Est1 note Telomerase activating protein Est1; CONTAINS InterPro DOMAIN/s: Telomerase activating protein Est1 (InterPro:IPR019458); BEST Arabidopsis thaliana protein match is: Telomerase activating protein Est1 (TAIR:AT5G19400.2); Has 490 Blast hits to 489 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 280; Fungi - 120; Plants - 68; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). protein_id AT1G28260.1p transcript_id AT1G28260.1 protein_id AT1G28260.1p transcript_id AT1G28260.1
At1g28260	chr1:009875776	0.0	C/9875776-9877561,9877685-9877866,9877955-9878077,9878150-9878650,9878732-9878782	AT1G28260.2 CDS Telomerase activating protein Est1 [TAIR10] CDS gene_syn F3H9.9, F3H9_9 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Telomerase activating protein Est1 note Telomerase activating protein Est1; CONTAINS InterPro DOMAIN/s: Telomerase activating protein Est1 (InterPro:IPR019458); BEST Arabidopsis thaliana protein match is: Telomerase activating protein Est1 (TAIR:AT5G19400.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28260.2p transcript_id AT1G28260.2 protein_id AT1G28260.2p transcript_id AT1G28260.2
AT1G28265	chr1:009879035	0.0	W/9879035-9879310	AT1G28265.1 AT1G28265.1 CDS hypothetical protein
At1g28270	chr1:009883165	0.0	W/9883165-9883497	AT1G28270.1 CDS ralf-like 4 [TAIR10] CDS gene_syn F3H9.8, F3H9_8, RALFL4, ralf-like 4 gene RALFL4 function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. go_component apoplast|GO:0048046|12611624|ISS go_process cell-cell signaling|GO:0007267|12611624|ISS go_function signal transducer activity|GO:0004871|12611624|TAS product ralf-like 4 note ralf-like 4 (RALFL4); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 19 (TAIR:AT2G33775.1); Has 245 Blast hits to 245 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 243; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28270.1p transcript_id AT1G28270.1 protein_id AT1G28270.1p transcript_id AT1G28270.1
At1g28280	chr1:009886297	0.0	C/9886297-9886310,9886678-9887395	AT1G28280.2 CDS VQ motif-containing protein [TAIR10] CDS gene_syn F3H9.7, F3H9_7 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product VQ motif-containing protein note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G33780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G28280.2p transcript_id AT1G28280.2 protein_id AT1G28280.2p transcript_id AT1G28280.2
At1g28280	chr1:009886652	0.0	C/9886652-9887395	AT1G28280.1 CDS VQ motif-containing protein [TAIR10] CDS gene_syn F3H9.7, F3H9_7 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product VQ motif-containing protein note VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G33780.1); Has 240 Blast hits to 231 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 36; Fungi - 32; Plants - 147; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). protein_id AT1G28280.1p transcript_id AT1G28280.1 protein_id AT1G28280.1p transcript_id AT1G28280.1
At1g28281	chr1:009887519	0.0	W/9887519-9887656	AT1G28281.1 CDS hypothetical protein [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA product unknown protein note unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G28281.1p transcript_id AT1G28281.1 protein_id AT1G28281.1p transcript_id AT1G28281.1
At1g28290	chr1:009889331	0.0	C/9889331-9889641,9890075-9890264,9890397-9890843	AT1G28290.2 CDS arabinogalactan protein 31 [TAIR10] CDS gene_syn AGP31, F3H9.6, F3H9_6, arabinogalactan protein 31 gene AGP31 function Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development. go_component plasma membrane|GO:0005886|17885091|IDA go_process response to jasmonic acid stimulus|GO:0009753|17885091|IEP product arabinogalactan protein 31 note arabinogalactan protein 31 (AGP31); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 30 (TAIR:AT2G33790.1); Has 103365 Blast hits to 37488 proteins in 2178 species: Archae - 367; Bacteria - 22498; Metazoa - 33534; Fungi - 9734; Plants - 13521; Viruses - 3257; Other Eukaryotes - 20454 (source: NCBI BLink). protein_id AT1G28290.2p transcript_id AT1G28290.2 protein_id AT1G28290.2p transcript_id AT1G28290.2
At1g28290	chr1:009889331	0.0	C/9889331-9889641,9890075-9890843	AT1G28290.1 CDS arabinogalactan protein 31 [TAIR10] CDS gene_syn AGP31, F3H9.6, F3H9_6, arabinogalactan protein 31 gene AGP31 function Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development. go_component plasma membrane|GO:0005886|17885091|IDA go_process response to jasmonic acid stimulus|GO:0009753|17885091|IEP product arabinogalactan protein 31 note arabinogalactan protein 31 (AGP31); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 30 (TAIR:AT2G33790.1); Has 151286 Blast hits to 46459 proteins in 2422 species: Archae - 571; Bacteria - 36421; Metazoa - 49452; Fungi - 15190; Plants - 16901; Viruses - 4924; Other Eukaryotes - 27827 (source: NCBI BLink). protein_id AT1G28290.1p transcript_id AT1G28290.1 protein_id AT1G28290.1p transcript_id AT1G28290.1
At1g28300	chr1:009897054	0.0	C/9897054-9897353,9897703-9897776,9897886-9897932,9898117-9898217,9899112-9899186,9899344-9899838	AT1G28300.1 CDS AP2/B3-like transcriptional factor family protein [TAIR10] CDS gene_syn F3H9.5, F3H9_5, LEAFY COTYLEDON 2, LEC2 gene LEC2 function Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development. LEC2 RNA accumulates primarily during seed development. LEC2 is required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase, and suppression of premature germination. It establishes a cellular environment sufficient to initiate embryo development - ectopic, postembryonic expression of LEC2 in transgenic plants induces the formation of somatic embryos and other organ-like structures and often confers embryonic characteristics to seedlings and to reproductive and vegetative organs of mature plants. go_component cellular_component|GO:0005575||ND go_process response to heat|GO:0009408|10759505|IMP go_process embryo development|GO:0009790|12244265|IMP go_process somatic embryogenesis|GO:0010262|11573014|IMP go_process seed oilbody biogenesis|GO:0010344|18287041|IMP go_process seed maturation|GO:0010431|18287041|IMP go_process positive regulation of auxin biosynthetic process|GO:0010601|18287041|IMP go_process positive regulation of transcription, DNA-dependent|GO:0045893|16492731|IDA go_function DNA binding|GO:0003677|16492731|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12244265|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|16492731|IDA product AP2/B3-like transcriptional factor family protein note LEAFY COTYLEDON 2 (LEC2); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G26790.1); Has 515 Blast hits to 514 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 515; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28300.1p transcript_id AT1G28300.1 protein_id AT1G28300.1p transcript_id AT1G28300.1
At1g28304	chr1:009903567	0.0	W/9903567-9903680,9903778-9903805,9903919-9904010	AT1G28304.1 CDS hypothetical protein [TAIR10] CDS go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G28304.1p transcript_id AT1G28304.1 protein_id AT1G28304.1p transcript_id AT1G28304.1
At1g28305	chr1:009905026	0.0	C/9905026-9905439	AT1G28305.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT1G28306.1); Has 197 Blast hits to 195 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28305.1p transcript_id AT1G28305.1 protein_id AT1G28305.1p transcript_id AT1G28305.1
At1g28306	chr1:009907202	0.0	C/9907202-9907615	AT1G28306.1 CDS Plant self-incompatibility protein S1 family [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Plant self-incompatibility protein S1 family note Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT1G28305.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G28306.1p transcript_id AT1G28306.1 protein_id AT1G28306.1p transcript_id AT1G28306.1
At1g28307	chr1:009909020	0.0	W/9909020-9909127	AT1G28307.1 CDS hypothetical protein [TAIR10] CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G28307.1p transcript_id AT1G28307.1 protein_id AT1G28307.1p transcript_id AT1G28307.1
At1g28310	chr1:009912534	0.0	C/9912534-9913469	AT1G28310.1 CDS Dof-type zinc finger DNA-binding family protein [TAIR10] CDS gene_syn F3H9.4, F3H9_4 go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12475498|ISS product Dof-type zinc finger DNA-binding family protein note Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBF-binding protein 3 (TAIR:AT3G55370.2); Has 1299 Blast hits to 1242 proteins in 95 species: Archae - 0; Bacteria - 24; Metazoa - 66; Fungi - 20; Plants - 1091; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). protein_id AT1G28310.1p transcript_id AT1G28310.1 protein_id AT1G28310.1p transcript_id AT1G28310.1
At1g28310	chr1:009912534	0.0	C/9912534-9913475,9913650-9913715	AT1G28310.2 CDS Dof-type zinc finger DNA-binding family protein [TAIR10] CDS gene_syn F3H9.4, F3H9_4 go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12475498|ISS product Dof-type zinc finger DNA-binding family protein note Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBF-binding protein 3 (TAIR:AT3G55370.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28310.2p transcript_id AT1G28310.2 protein_id AT1G28310.2p transcript_id AT1G28310.2
At1g28320	chr1:009920673	0.0	C/9920673-9920920,9921020-9921111,9921252-9921444,9921642-9922308,9922394-9922488,9922580-9922665,9922782-9922885,9922970-9923080,9923231-9923359,9923554-9923613,9923703-9923750,9923846-9924029,9924122-9924168,9924282-9924347	AT1G28320.1 CDS protease-related [TAIR10] CDS gene_syn DEG15, F3H9.3, F3H9_3 gene DEG15 function Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH. go_component cellular_component|GO:0005575||ND go_function endopeptidase activity|GO:0004175|17592111|IMP product protease-related note DEG15; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 3917 Blast hits to 3716 proteins in 1340 species: Archae - 34; Bacteria - 3021; Metazoa - 72; Fungi - 16; Plants - 139; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink). protein_id AT1G28320.1p transcript_id AT1G28320.1 protein_id AT1G28320.1p transcript_id AT1G28320.1
At1g28323	chr1:009928401	0.0	W/9928401-9931731	AT1G28323.1 [TAIR10] mRNA
At1g28323	chr1:009928401	0.0	W/9928401-9931731	AT1G28323 [TAIR10] TE pseudo gene_syn F3H9.28 note Transposable element gene, copia-like retrotransposon family, has a 1.9e-140 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)
At1g28327	chr1:009932120	0.0	W/9932120-9932635,9932711-9932818,9932906-9933079,9933169-9933195	AT1G28327.1 CDS E3 ubiquitin-protein ligase, putative [TAIR10] CDS gene_syn F3H9.2, F3H9_2 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 52 Blast hits to 52 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28327.1p transcript_id AT1G28327.1 protein_id AT1G28327.1p transcript_id AT1G28327.1
AT1G28329	chr1:009932773	0.0	C/9932773-9932835,9932924-9933104,9933191-9933243	AT1G28329.1 AT1G28329.1 CDS hypothetical protein
At1g28330	chr1:009934134	0.0	C/9934134-9934147,9934257-9934288,9934794-9935019,9935111-9935216	AT1G28330.4 CDS dormancy-associated protein-like 1 [TAIR10] CDS gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DRM1, DYL1, F3H9.1, F3H9_1, dormancy-associated protein-like 1 gene DYL1 function dormancy-associated protein (DRM1) go_component cellular_component|GO:0005575||ND go_process response to sucrose stimulus|GO:0009744|16463203|IEP go_process response to glucose stimulus|GO:0009749|16463203|IEP go_process response to fructose stimulus|GO:0009750|16463203|IEP go_function molecular_function|GO:0003674||ND product dormancy-associated protein-like 1 note dormancy-associated protein-like 1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 226 Blast hits to 226 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G28330.4p transcript_id AT1G28330.4 protein_id AT1G28330.4p transcript_id AT1G28330.4
At1g28330	chr1:009934252	0.0	C/9934252-9934288,9934794-9935019,9935111-9935216	AT1G28330.1 CDS dormancy-associated protein-like 1 [TAIR10] CDS gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DRM1, DYL1, F3H9.1, F3H9_1, dormancy-associated protein-like 1 gene DYL1 function dormancy-associated protein (DRM1) go_component cellular_component|GO:0005575||ND go_process response to sucrose stimulus|GO:0009744|16463203|IEP go_process response to glucose stimulus|GO:0009749|16463203|IEP go_process response to fructose stimulus|GO:0009750|16463203|IEP go_function molecular_function|GO:0003674||ND product dormancy-associated protein-like 1 note dormancy-associated protein-like 1 (DYL1); CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 226 Blast hits to 226 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G28330.1p transcript_id AT1G28330.1 protein_id AT1G28330.1p transcript_id AT1G28330.1
At1g28330	chr1:009934252	0.0	C/9934252-9934336,9934504-9934566,9934794-9935019,9935111-9935216	AT1G28330.5 CDS dormancy-associated protein-like 1 [TAIR10] CDS gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DRM1, DYL1, F3H9.1, F3H9_1, dormancy-associated protein-like 1 gene DYL1 function dormancy-associated protein (DRM1) go_component cellular_component|GO:0005575||ND go_process response to sucrose stimulus|GO:0009744|16463203|IEP go_process response to glucose stimulus|GO:0009749|16463203|IEP go_process response to fructose stimulus|GO:0009750|16463203|IEP go_function molecular_function|GO:0003674||ND product dormancy-associated protein-like 1 note dormancy-associated protein-like 1 (DYL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT2G33830.2). protein_id AT1G28330.5p transcript_id AT1G28330.5 protein_id AT1G28330.5p transcript_id AT1G28330.5
At1g28330	chr1:009934500	0.0	C/9934500-9934566,9934794-9935019,9935111-9935216	AT1G28330.2 CDS dormancy-associated protein-like 1 [TAIR10] CDS gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DRM1, DYL1, F3H9.1, F3H9_1, dormancy-associated protein-like 1 gene DYL1 function dormancy-associated protein (DRM1) go_component cellular_component|GO:0005575||ND go_process response to sucrose stimulus|GO:0009744|16463203|IEP go_process response to glucose stimulus|GO:0009749|16463203|IEP go_process response to fructose stimulus|GO:0009750|16463203|IEP go_function molecular_function|GO:0003674||ND product dormancy-associated protein-like 1 note dormancy-associated protein-like 1 (DYL1); CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 226 Blast hits to 226 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G28330.2p transcript_id AT1G28330.2 protein_id AT1G28330.2p transcript_id AT1G28330.2
At1g28330	chr1:009934500	0.0	C/9934500-9934566,9934794-9935019,9935111-9935216	AT1G28330.3 CDS dormancy-associated protein-like 1 [TAIR10] CDS gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DRM1, DYL1, F3H9.1, F3H9_1, dormancy-associated protein-like 1 gene DYL1 function dormancy-associated protein (DRM1) go_component cellular_component|GO:0005575||ND go_process response to sucrose stimulus|GO:0009744|16463203|IEP go_process response to glucose stimulus|GO:0009749|16463203|IEP go_process response to fructose stimulus|GO:0009750|16463203|IEP go_function molecular_function|GO:0003674||ND product dormancy-associated protein-like 1 note dormancy-associated protein-like 1 (DYL1); CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 226 Blast hits to 226 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G28330.3p transcript_id AT1G28330.3 protein_id AT1G28330.3p transcript_id AT1G28330.3
AT1G28330	chr1:009934790	0.0	C/9934790-9935019,9935111-9935216	AT1G28330.6 AT1G28330.6 CDS dormancy-associated protein-like 1
AT1G28330	chr1:009934790	0.0	C/9934790-9935019,9935111-9935216	AT1G28330.7 AT1G28330.7 CDS dormancy-associated protein-like 1
At1g28335	chr1:009937036	0.0	W/9937036-9937096,9937353-9937537	AT1G28335.1 CDS low-molecular-weight cysteine-rich 31 [TAIR10] CDS gene_syn LCR31, low-molecular-weight cysteine-rich 31 gene LCR31 function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. go_component endomembrane system|GO:0012505||IEA product low-molecular-weight cysteine-rich 31 note low-molecular-weight cysteine-rich 31 (LCR31); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28335.1p transcript_id AT1G28335.1 protein_id AT1G28335.1p transcript_id AT1G28335.1
At1g28340	chr1:009940175	0.0	W/9940175-9940247,9940327-9941382,9941726-9941873,9942044-9942115,9942333-9942404,9942496-9942567,9942663-9942740,9942858-9943039,9943125-9943252	AT1G28340.1 CDS receptor like protein 4 [TAIR10] CDS gene_syn AtRLP4, F3M18.23, F3M18_23, RLP4, receptor like protein 4 gene RLP4 go_component endomembrane system|GO:0012505||IEA go_process signal transduction|GO:0007165|11751054|IC product receptor like protein 4 note receptor like protein 4 (RLP4); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Leucine-rich repeat domain (TAIR:AT1G25570.1); Has 80698 Blast hits to 16677 proteins in 704 species: Archae - 13; Bacteria - 1525; Metazoa - 2886; Fungi - 292; Plants - 72469; Viruses - 0; Other Eukaryotes - 3513 (source: NCBI BLink). protein_id AT1G28340.1p transcript_id AT1G28340.1 protein_id AT1G28340.1p transcript_id AT1G28340.1
At1g28350	chr1:009944483	0.0	W/9944483-9944541,9944864-9945017,9945137-9945420,9945500-9945596,9945773-9945878,9945965-9946047,9946127-9946272,9946447-9946552,9946666-9946725,9946850-9946866,9946985-9947065,9947407-9947560,9947930-9948213,9948294-9948390,9948481-9948586,9948666-9948748,9948831-9948973,9949080-9949185,9949399-9949458,9949557-9949577	AT1G28350.1 CDS Nucleotidylyl transferase superfamily protein [TAIR10] CDS gene_syn F3M18.22, F3M18_22 go_component cytoplasm|GO:0005737||IEA go_process translation|GO:0006412||IEA go_process tRNA aminoacylation for protein translation|GO:0006418||IEA go_process tyrosyl-tRNA aminoacylation|GO:0006437||IEA go_function nucleotide binding|GO:0000166||IEA go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA go_function tyrosine-tRNA ligase activity|GO:0004831||IEA go_function ATP binding|GO:0005524||IEA go_process tRNA aminoacylation for protein translation|GO:0006418||ISS go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS go_function ATP binding|GO:0005524||ISS product Nucleotidylyl transferase superfamily protein note Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tyrosyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (TAIR:AT2G33840.1); Has 6761 Blast hits to 4745 proteins in 1539 species: Archae - 718; Bacteria - 3084; Metazoa - 577; Fungi - 521; Plants - 241; Viruses - 10; Other Eukaryotes - 1610 (source: NCBI BLink). protein_id AT1G28350.1p transcript_id AT1G28350.1 protein_id AT1G28350.1p transcript_id AT1G28350.1
AT1G28350	chr1:009944483	0.0	W/9944483-9944541,9944864-9945017,9945137-9945420,9945500-9945596,9945773-9945878,9945965-9946047,9946127-9946272,9946447-9946552,9946666-9946725,9946850-9946866,9946985-9947065,9947407-9947560,9947930-9948213,9948294-9948390,9948481-9948586,9948666-9948748,9948831-9948973,9949080-9949185,9949399-9949458,9949557-9949577	AT1G28350.2 AT1G28350.2 CDS Nucleotidylyl transferase superfamily protein
AT1G28350	chr1:009945003	0.0	W/9945003-9945017,9945137-9945420,9945500-9945596,9945773-9945878,9945965-9946047,9946127-9946272,9946447-9946552,9946666-9946725,9946850-9946866,9946985-9947065,9947407-9947560,9947930-9948213,9948294-9948390,9948481-9948586,9948666-9948748,9948831-9948973,9949080-9949185,9949399-9949458,9949557-9949577	AT1G28350.3 AT1G28350.3 CDS Nucleotidylyl transferase superfamily protein
At1g28360	chr1:009951934	0.0	W/9951934-9952503	AT1G28360.1 CDS ERF domain protein 12 [TAIR10] CDS gene_syn ATERF12, ERF DOMAIN PROTEIN 12, ERF domain protein 12, ERF12, F3M18.21, F3M18_21 gene ERF12 function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS go_function DNA binding|GO:0003677|11487705|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11487705|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9687012|TAS go_function transcription repressor activity|GO:0016564|11487705|TAS product ERF domain protein 12 note ERF domain protein 12 (ERF12); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 5550 Blast hits to 5447 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 5541; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). protein_id AT1G28360.1p transcript_id AT1G28360.1 protein_id AT1G28360.1p transcript_id AT1G28360.1
At1g28370	chr1:009956351	0.0	C/9956351-9956851	AT1G28370.1 CDS ERF domain protein 11 [TAIR10] CDS gene_syn ATERF11, ERF DOMAIN PROTEIN 11, ERF domain protein 11, ERF11, F3M18.20, F3M18_20 gene ERF11 function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. go_component nucleus|GO:0005634|11487705|IC go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS go_function DNA binding|GO:0003677|11487705|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11487705|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9687012|TAS go_function transcription repressor activity|GO:0016564|11487705|TAS product ERF domain protein 11 note ERF domain protein 11 (ERF11); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 6129 Blast hits to 5763 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6120; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). protein_id AT1G28370.1p transcript_id AT1G28370.1 protein_id AT1G28370.1p transcript_id AT1G28370.1
AT1G28370	chr1:009956351	0.0	C/9956351-9956965	AT1G28370.2 AT1G28370.2 CDS ERF domain protein 11
At1g28375	chr1:009961155	0.0	W/9961155-9961463	AT1G28375.1 CDS transmembrane protein, putative [TAIR10] CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28375.1p transcript_id AT1G28375.1 protein_id AT1G28375.1p transcript_id AT1G28375.1
At1g28380	chr1:009963696	0.0	W/9963696-9963968,9964064-9964302,9964393-9964594,9964683-9964763,9964847-9965030,9965115-9965281,9965368-9966060	AT1G28380.1 CDS MAC/Perforin domain-containing protein [TAIR10] CDS gene_syn F3M18.18, F3M18_18, NSL1, necrotic spotted lesions 1 gene NSL1 function This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. go_component cellular_component|GO:0005575||ND go_process plant-type hypersensitive response|GO:0009626|16900325|IMP go_process response to salt stress|GO:0009651|16900325|TAS go_process regulation of salicylic acid metabolic process|GO:0010337|16900325|IMP go_process defense response by callose deposition|GO:0052542|16900325|IMP go_function molecular_function|GO:0003674||ND product MAC/Perforin domain-containing protein note necrotic spotted lesions 1 (NSL1); CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 203 Blast hits to 202 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28380.1p transcript_id AT1G28380.1 protein_id AT1G28380.1p transcript_id AT1G28380.1
At1g28390	chr1:009966366	0.0	C/9966366-9966439,9966876-9968226	AT1G28390.2 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F3M18.17, F3M18_17 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G51990.1). protein_id AT1G28390.2p transcript_id AT1G28390.2 protein_id AT1G28390.2p transcript_id AT1G28390.2
At1g28390	chr1:009966814	0.0	C/9966814-9968226	AT1G28390.1 CDS Protein kinase superfamily protein [TAIR10] CDS gene_syn F3M18.17, F3M18_17 go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_component cellular_component|GO:0005575||ND go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G51990.1); Has 101909 Blast hits to 100959 proteins in 2971 species: Archae - 79; Bacteria - 11366; Metazoa - 36596; Fungi - 8457; Plants - 30559; Viruses - 339; Other Eukaryotes - 14513 (source: NCBI BLink). protein_id AT1G28390.1p transcript_id AT1G28390.1 protein_id AT1G28390.1p transcript_id AT1G28390.1
At1g28395	chr1:009969580	0.0	C/9969580-9969587,9971073-9971188,9971282-9971433	AT1G28395.5 CDS hypothetical protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). protein_id AT1G28395.5p transcript_id AT1G28395.5 protein_id AT1G28395.5p transcript_id AT1G28395.5
At1g28395	chr1:009969817	0.0	C/9969817-9969836,9971073-9971188,9971282-9971433	AT1G28395.4 CDS hypothetical protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G28395.4p transcript_id AT1G28395.4 protein_id AT1G28395.4p transcript_id AT1G28395.4
AT1G28395	chr1:009969817	0.0	C/9969817-9969836,9971073-9971188,9971282-9971433	AT1G28395.6 AT1G28395.6 CDS hypothetical protein
At1g28395	chr1:009970134	0.0	C/9970134-9970153,9971073-9971188,9971282-9971433	AT1G28395.1 CDS hypothetical protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28395.1p transcript_id AT1G28395.1 protein_id AT1G28395.1p transcript_id AT1G28395.1
At1g28395	chr1:009970134	0.0	C/9970134-9970153,9971073-9971188,9971282-9971433	AT1G28395.2 CDS hypothetical protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28395.2p transcript_id AT1G28395.2 protein_id AT1G28395.2p transcript_id AT1G28395.2
At1g28395	chr1:009970134	0.0	C/9970134-9970153,9971073-9971188,9971282-9971433	AT1G28395.3 CDS hypothetical protein [TAIR10] CDS go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28395.3p transcript_id AT1G28395.3 protein_id AT1G28395.3p transcript_id AT1G28395.3
At1g28400	chr1:009972732	0.0	C/9972732-9973739	AT1G28400.1 CDS GATA zinc finger protein [TAIR10] CDS gene_syn F3M18.16, F3M18_16 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). protein_id AT1G28400.1p transcript_id AT1G28400.1 protein_id AT1G28400.1p transcript_id AT1G28400.1
At1g28410	chr1:009976596	0.0	C/9976596-9976652,9976751-9976831,9976918-9977076,9977194-9977250,9977366-9977416,9977857-9977970,9978121-9978168,9978688-9978815,9978942-9979080	AT1G28410.1 CDS myosin heavy chain-like protein, putative [TAIR10] CDS gene_syn F3M18.15, F3M18_15 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.2); Has 425 Blast hits to 402 proteins in 77 species: Archae - 4; Bacteria - 22; Metazoa - 249; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G28410.1p transcript_id AT1G28410.1 protein_id AT1G28410.1p transcript_id AT1G28410.1
AT1G28410	chr1:009976596	0.0	C/9976596-9976652,9976751-9976831,9976918-9977076,9977194-9977250,9977366-9977416,9977857-9977970,9978121-9978168,9978688-9978815,9978942-9979080	AT1G28410.2 AT1G28410.2 CDS myosin heavy chain-like protein, putative
At1g28420	chr1:009979936	0.0	W/9979936-9980113,9980195-9980674,9980791-9980861,9981175-9981537,9981630-9981719,9981834-9981998,9982125-9982347,9982780-9982880,9983050-9983136,9983239-9983391,9983484-9983639,9983817-9984026,9984114-9984761,9984861-9985373,9985500-9986057,9986138-9986242,9986337-9986579,9986687-9987460	AT1G28420.1 CDS homeobox-1 [TAIR10] CDS gene_syn F3M18.14, F3M18_14, HB-1, homeobox-1 gene HB-1 go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_process regulation of transcription|GO:0045449||IEA go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product homeobox-1 note homeobox-1 (HB-1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), DDT domain (InterPro:IPR004022), DDT domain, subgroup (InterPro:IPR018500), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G44180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G28420.1p transcript_id AT1G28420.1 protein_id AT1G28420.1p transcript_id AT1G28420.1
At1g28430	chr1:009992986	0.0	C/9992986-9993639,9993731-9994642	AT1G28430.1 CDS cytochrome P450, family 705, subfamily A, polypeptide 24 [TAIR10] CDS gene_syn cytochrome P450, family 705, subfamily A, polypeptide 24, CYP705A24, F3M18.13, F3M18_13 gene CYP705A24 function member of CYP705A go_component endomembrane system|GO:0012505||IEA go_process oxidation reduction|GO:0055114||IEA go_function monooxygenase activity|GO:0004497||IEA go_function iron ion binding|GO:0005506||IEA go_function electron carrier activity|GO:0009055||IEA go_function heme binding|GO:0020037||IEA go_function oxygen binding|GO:0019825||ISS product cytochrome P450, family 705, subfamily A, polypeptide 24 note cytochrome P450, family 705, subfamily A, polypeptide 24 (CYP705A24); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 705, subfamily A, polypeptide 1 (TAIR:AT4G15330.1); Has 32235 Blast hits to 32061 proteins in 1649 species: Archae - 48; Bacteria - 2998; Metazoa - 11594; Fungi - 7262; Plants - 9240; Viruses - 6; Other Eukaryotes - 1087 (source: NCBI BLink). protein_id AT1G28430.1p transcript_id AT1G28430.1 protein_id AT1G28430.1p transcript_id AT1G28430.1
At1g28440	chr1:009996914	0.0	W/9996914-9999500,9999768-10000171	AT1G28440.1 CDS HAESA-like 1 [TAIR10] CDS gene_syn F3M18.12, F3M18_12, HAESA-like 1, HSL1 gene HSL1 go_process protein amino acid phosphorylation|GO:0006468||IEA go_process protein amino acid phosphorylation|GO:0006468||ISS go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS go_function protein serine/threonine kinase activity|GO:0004674||ISS go_function ATP binding|GO:0005524||ISS go_function kinase activity|GO:0016301||ISS product HAESA-like 1 note HAESA-like 1 (HSL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT4G28490.1); Has 214855 Blast hits to 132793 proteins in 4138 species: Archae - 139; Bacteria - 23060; Metazoa - 65756; Fungi - 10225; Plants - 90032; Viruses - 401; Other Eukaryotes - 25242 (source: NCBI BLink). protein_id AT1G28440.1p transcript_id AT1G28440.1 protein_id AT1G28440.1p transcript_id AT1G28440.1
At1g28447	chr1:010003150	0.0	W/10003150-10003540	AT1G28447.1 [TAIR10] pseudogene
At1g28450	chr1:010003966	0.0	W/10003966-10004523	AT1G28450.1 CDS AGAMOUS-like 58 [TAIR10] CDS gene_syn AGAMOUS-like 58, AGL58, F3M18.11, F3M18_11 gene AGL58 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS product AGAMOUS-like 58 note AGAMOUS-like 58 (AGL58); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: antipodal cell, embryo, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 59 (TAIR:AT1G28460.1); Has 4825 Blast hits to 4825 proteins in 573 species: Archae - 0; Bacteria - 0; Metazoa - 521; Fungi - 220; Plants - 4036; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G28450.1p transcript_id AT1G28450.1 protein_id AT1G28450.1p transcript_id AT1G28450.1
At1g28455	chr1:010005230	0.0	W/10005230-10005700	AT1G28455.1 [TAIR10] pseudogene
At1g28460	chr1:010006230	0.0	W/10006230-10006778	AT1G28460.1 CDS AGAMOUS-like 59 [TAIR10] CDS gene_syn AGAMOUS-like 59, AGL59, F3M18.10, F3M18_10 gene AGL59 go_component nucleus|GO:0005634||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12837945|ISS product AGAMOUS-like 59 note AGAMOUS-like 59 (AGL59); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: antipodal cell, embryo, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 58 (TAIR:AT1G28450.1); Has 5362 Blast hits to 5362 proteins in 648 species: Archae - 0; Bacteria - 0; Metazoa - 601; Fungi - 291; Plants - 4406; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). protein_id AT1G28460.1p transcript_id AT1G28460.1 protein_id AT1G28460.1p transcript_id AT1G28460.1
At1g28465	chr1:010007521	0.0	W/10007521-10008087	AT1G28465.1 [TAIR10] mRNA
At1g28465	chr1:010007521	0.0	W/10007521-10008087	AT1G28465 [TAIR10] TE pseudo gene_syn F3M18.30 note Transposable element gene, pseudogene, hypothetical protein
At1g28470	chr1:010010259	0.0	W/10010259-10010459,10010550-10010742,10011317-10011867	AT1G28470.1 CDS NAC domain containing protein 10 [TAIR10] CDS gene_syn ANAC010, F3M18.9, F3M18_9, NAC domain containing protein 10, NAC010, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, SND3 gene NAC010 go_component nucleus|GO:0005634|18952777|IDA go_process multicellular organismal development|GO:0007275||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|18952777|IDA product NAC domain containing protein 10 note NAC domain containing protein 10 (NAC010); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 73 (TAIR:AT4G28500.1); Has 2334 Blast hits to 2329 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28470.1p transcript_id AT1G28470.1 protein_id AT1G28470.1p transcript_id AT1G28470.1
At1g28480	chr1:010013634	0.0	C/10013634-10014047	AT1G28480.1 CDS Thioredoxin superfamily protein [TAIR10] CDS gene_syn GRX480, ROXY19, roxy19 gene GRX480 function Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk. go_function electron carrier activity|GO:0009055||IEA go_function protein disulfide oxidoreductase activity|GO:0015035||IEA go_component cellular_component|GO:0005575||ND go_process response to salicylic acid stimulus|GO:0009751|17397508|IEP go_process salicylic acid mediated signaling pathway|GO:0009863|17397508|IMP go_process jasmonic acid mediated signaling pathway|GO:0009867|17397508|IMP product Thioredoxin superfamily protein note GRX480; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: salicylic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT1G03850.2); Has 774 Blast hits to 772 proteins in 85 species: Archae - 0; Bacteria - 6; Metazoa - 52; Fungi - 18; Plants - 684; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_id AT1G28480.1p transcript_id AT1G28480.1 protein_id AT1G28480.1p transcript_id AT1G28480.1
At1g28490	chr1:010016433	0.0	W/10016433-10016486,10016567-10016680,10016869-10016982,10017079-10017266,10017412-10017502,10017588-10017653,10017732-10017842	AT1G28490.1 CDS syntaxin of plants 61 [TAIR10] CDS gene_syn ATSYP61, F3M18.7, F3M18_7, OSM1, SYP61, syntaxin of plants 61 gene SYP61 function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. go_component trans-Golgi network transport vesicle|GO:0030140|11115874|ISS go_process intracellular protein transport|GO:0006886|11115874|ISS go_process cellular membrane fusion|GO:0006944|11115874|ISS go_function SNAP receptor activity|GO:0005484|11115874|TAS product syntaxin of plants 61 note syntaxin of plants 61 (SYP61); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 935 Blast hits to 902 proteins in 210 species: Archae - 0; Bacteria - 8; Metazoa - 293; Fungi - 255; Plants - 233; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink). protein_id AT1G28490.1p transcript_id AT1G28490.1 protein_id AT1G28490.1p transcript_id AT1G28490.1
At1g28490	chr1:010016634	0.0	W/10016634-10016680,10016865-10016982,10017079-10017266,10017412-10017502,10017588-10017653,10017732-10017842	AT1G28490.2 CDS syntaxin of plants 61 [TAIR10] CDS gene_syn ATSYP61, F3M18.7, F3M18_7, OSM1, SYP61, syntaxin of plants 61 gene SYP61 function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. go_component trans-Golgi network transport vesicle|GO:0030140|11115874|ISS go_process intracellular protein transport|GO:0006886|11115874|ISS go_process cellular membrane fusion|GO:0006944|11115874|ISS go_function SNAP receptor activity|GO:0005484|11115874|TAS product syntaxin of plants 61 note syntaxin of plants 61 (SYP61); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 786 Blast hits to 786 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 244; Fungi - 238; Plants - 166; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink). protein_id AT1G28490.2p transcript_id AT1G28490.2 protein_id AT1G28490.2p transcript_id AT1G28490.2
AT1G28490	chr1:010016836	0.0	W/10016836-10016982,10017079-10017266,10017412-10017502,10017588-10017653,10017732-10017842	AT1G28490.3 AT1G28490.3 CDS syntaxin of plants 61
At1g28500	chr1:010018691	0.0	W/10018691-10018777,10019020-10019163,10019335-10019536,10019626-10019759,10019846-10019932,10020024-10020350	AT1G28500.1 CDS hypothetical protein (DUF626) [TAIR10] CDS gene_syn F3M18.6, F3M18_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF626) note Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G27860.1); Has 198 Blast hits to 197 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28500.1p transcript_id AT1G28500.1 protein_id AT1G28500.1p transcript_id AT1G28500.1
At1g28510	chr1:010024036	0.0	W/10024036-10024164,10024371-10024505,10025148-10025234,10025775-10025939	AT1G28510.1 CDS Optic atrophy 3 protein (OPA3) [TAIR10] CDS gene_syn F3M18.5, F3M18_5 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product Optic atrophy 3 protein (OPA3) note Optic atrophy 3 protein (OPA3); CONTAINS InterPro DOMAIN/s: Optic atrophy 3-like (InterPro:IPR010754); BEST Arabidopsis thaliana protein match is: Optic atrophy 3 protein (OPA3) (TAIR:AT3G58150.1); Has 397 Blast hits to 393 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 114; Plants - 80; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). protein_id AT1G28510.1p transcript_id AT1G28510.1 protein_id AT1G28510.1p transcript_id AT1G28510.1
At1g28520	chr1:010029713	0.0	W/10029713-10029943,10030064-10030213,10030311-10030827,10030917-10031479	AT1G28520.1 CDS vascular plant one zinc finger protein [TAIR10] CDS gene_syn ATVOZ1, F3M18.4, F3M18_4, VASCULAR PLANT ONE ZINC FINGER PROTEIN, VOZ1, vascular plant one zinc finger protein gene VOZ1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function transcription activator activity|GO:0016563|15295067|IDA product vascular plant one zinc finger protein note vascular plant one zinc finger protein (VOZ1); BEST Arabidopsis thaliana protein match is: vascular plant one zinc finger protein 2 (TAIR:AT2G42400.1); Has 77 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28520.1p transcript_id AT1G28520.1 protein_id AT1G28520.1p transcript_id AT1G28520.1
At1g28520	chr1:010029713	0.0	W/10029713-10029943,10030064-10030213,10030311-10030827,10030917-10031479	AT1G28520.2 CDS vascular plant one zinc finger protein [TAIR10] CDS gene_syn ATVOZ1, F3M18.4, F3M18_4, VASCULAR PLANT ONE ZINC FINGER PROTEIN, VOZ1, vascular plant one zinc finger protein gene VOZ1 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function transcription activator activity|GO:0016563|15295067|IDA product vascular plant one zinc finger protein note vascular plant one zinc finger protein (VOZ1); FUNCTIONS IN: transcription activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: vascular plant one zinc finger protein 2 (TAIR:AT2G42400.1); Has 77 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28520.2p transcript_id AT1G28520.2 protein_id AT1G28520.2p transcript_id AT1G28520.2
AT1G28520	chr1:010029713	0.0	W/10029713-10029943,10030064-10030213,10030311-10030827,10030917-10031479	AT1G28520.4 AT1G28520.4 CDS vascular plant one zinc finger protein
AT1G28520	chr1:010029713	0.0	W/10029713-10029943,10030064-10030213,10030311-10030827,10030917-10031479	AT1G28520.5 AT1G28520.5 CDS vascular plant one zinc finger protein
AT1G28520	chr1:010029713	0.0	W/10029713-10029943,10030112-10030213,10030311-10030827,10030917-10031479	AT1G28520.3 AT1G28520.3 CDS vascular plant one zinc finger protein
At1g28530	chr1:010032127	0.0	C/10032127-10032245,10032346-10032466,10032549-10032779,10033134-10033319,10033674-10033784,10034236-10034721,10034822-10035025,10035113-10035496	AT1G28530.2 CDS deneddylase [TAIR10] CDS gene_syn F3M18.3 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28530.2p transcript_id AT1G28530.2 protein_id AT1G28530.2p transcript_id AT1G28530.2
At1g28530	chr1:010032127	0.0	C/10032127-10032245,10032346-10032466,10032549-10032779,10033134-10033319,10033674-10033784,10034236-10034724,10034822-10035025,10035113-10035496	AT1G28530.1 CDS deneddylase [TAIR10] CDS gene_syn F3M18.3 go_component chloroplast|GO:0009507||IEA go_process biological_process|GO:0008150||ND product unknown protein note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28530.1p transcript_id AT1G28530.1 protein_id AT1G28530.1p transcript_id AT1G28530.1
At1g28540	chr1:010035696	0.0	W/10035696-10036007	AT1G28540.1 CDS transmembrane protein, putative [TAIR10] CDS gene_syn F3M18.29 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28540.1p transcript_id AT1G28540.1 protein_id AT1G28540.1p transcript_id AT1G28540.1
At1g28550	chr1:010036966	0.0	C/10036966-10037401,10037478-10037698	AT1G28550.1 CDS RAB GTPase homolog A1I [TAIR10] CDS gene_syn AtRABA1i, F3M18.2, RAB GTPase homolog A1I, RABA1i gene RABA1i go_component plasma membrane|GO:0005886|17644812|IDA go_process small GTPase mediated signal transduction|GO:0007264||IEA go_process protein transport|GO:0015031||IEA go_function GTP binding|GO:0005525||IEA go_function GTP binding|GO:0005525||ISS product RAB GTPase homolog A1I note RAB GTPase homolog A1I (RABA1i); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1H (TAIR:AT2G33870.1); Has 26472 Blast hits to 26426 proteins in 734 species: Archae - 24; Bacteria - 151; Metazoa - 13774; Fungi - 3933; Plants - 2930; Viruses - 20; Other Eukaryotes - 5640 (source: NCBI BLink). protein_id AT1G28550.1p transcript_id AT1G28550.1 protein_id AT1G28550.1p transcript_id AT1G28550.1
At1g28560	chr1:010038197	0.0	C/10038197-10038472,10038574-10038834,10038927-10039052,10039147-10039239,10039346-10039436,10039523-10039611,10039775-10039889,10040008-10040040,10040205-10040257,10040359-10040382	AT1G28560.2 CDS snRNA activating complex family protein [TAIR10] CDS gene_syn F3M18.1, SHOOT REDIFFERENTIATION DEFECTIVE 2, SRD2 gene SRD2 function Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation. go_component nucleus|GO:0005634|16098103|IDA go_process snRNA transcription|GO:0009301|16098103|IMP go_process snRNA transcription|GO:0009301||ISS go_process organ morphogenesis|GO:0009887|12232244|IMP go_function DNA binding|GO:0003677||ISS product snRNA activating complex family protein note SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); FUNCTIONS IN: DNA binding; INVOLVED IN: snRNA transcription, organ morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: snRNA-activating protein complex, subunit 3, C-terminal (InterPro:IPR022042); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G28560.2p transcript_id AT1G28560.2 protein_id AT1G28560.2p transcript_id AT1G28560.2
At1g28560	chr1:010038197	0.0	C/10038197-10038472,10038574-10038834,10038927-10039052,10039147-10039239,10039346-10039436,10039523-10039611,10039775-10039889,10040205-10040257,10040359-10040382	AT1G28560.1 CDS snRNA activating complex family protein [TAIR10] CDS gene_syn F3M18.1, SHOOT REDIFFERENTIATION DEFECTIVE 2, SRD2 gene SRD2 function Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation. go_component nucleus|GO:0005634|16098103|IDA go_process snRNA transcription|GO:0009301|16098103|IMP go_process snRNA transcription|GO:0009301||ISS go_process organ morphogenesis|GO:0009887|12232244|IMP go_function DNA binding|GO:0003677||ISS product snRNA activating complex family protein note SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); CONTAINS InterPro DOMAIN/s: snRNA-activating protein complex, subunit 3, C-terminal (InterPro:IPR022042); Has 243 Blast hits to 241 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 2; Plants - 44; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). protein_id AT1G28560.1p transcript_id AT1G28560.1 protein_id AT1G28560.1p transcript_id AT1G28560.1
AT1G28560	chr1:010038197	0.0	C/10038197-10038472,10038574-10038834,10038927-10039052,10039147-10039239,10039346-10039436,10039523-10039611,10039775-10039889,10040205-10040257,10040359-10040425,10040527-10040744	AT1G28560.3 AT1G28560.3 CDS snRNA activating complex family protein
AT1G28570	chr1:010041838	0.0	C/10041838-10042103,10042179-10042455,10042524-10042661	AT1G28570.3 AT1G28570.3 CDS SGNH hydrolase-type esterase superfamily protein
At1g28570	chr1:010041838	0.0	C/10041838-10042103,10042179-10042455,10042524-10042672,10043048-10043263,10043851-10044112	AT1G28570.1 CDS SGNH hydrolase-type esterase superfamily protein [TAIR10] CDS gene_syn F1K23.19, F1K23_19 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS go_function lipase activity|GO:0016298||ISS product SGNH hydrolase-type esterase superfamily protein note SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28580.1); Has 3513 Blast hits to 3464 proteins in 231 species: Archae - 0; Bacteria - 358; Metazoa - 0; Fungi - 4; Plants - 3140; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). protein_id AT1G28570.1p transcript_id AT1G28570.1 protein_id AT1G28570.1p transcript_id AT1G28570.1
At1g28570	chr1:010041838	0.0	C/10041838-10042103,10042179-10042455,10042524-10042672,10043851-10044112	AT1G28570.2 CDS SGNH hydrolase-type esterase superfamily protein [TAIR10] CDS gene_syn F1K23.19, F1K23_19 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS go_function lipase activity|GO:0016298||ISS product SGNH hydrolase-type esterase superfamily protein note SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28570.2p transcript_id AT1G28570.2 protein_id AT1G28570.2p transcript_id AT1G28570.2
At1g28580	chr1:010044603	0.0	C/10044603-10044862,10044948-10045224,10045300-10045448,10045631-10045846,10046109-10046379	AT1G28580.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F1K23.18, F1K23_18 go_component vacuole|GO:0005773|15539469|IDA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS go_function lipase activity|GO:0016298||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT1G28570.1); Has 3549 Blast hits to 3495 proteins in 231 species: Archae - 0; Bacteria - 383; Metazoa - 0; Fungi - 5; Plants - 3148; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). protein_id AT1G28580.1p transcript_id AT1G28580.1 protein_id AT1G28580.1p transcript_id AT1G28580.1
At1g28580	chr1:010044603	0.0	C/10044603-10044862,10044948-10045224,10045300-10045448,10045631-10045874	AT1G28580.2 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F1K23.18, F1K23_18 go_component vacuole|GO:0005773|15539469|IDA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS go_function lipase activity|GO:0016298||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT1G28570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28580.2p transcript_id AT1G28580.2 protein_id AT1G28580.2p transcript_id AT1G28580.2
At1g28590	chr1:010047509	0.0	C/10047509-10047810,10047903-10048179,10048307-10048455,10048590-10048805,10049033-10049300	AT1G28590.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F1K23.17, F1K23_17 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G27360.1); Has 3435 Blast hits to 3386 proteins in 204 species: Archae - 0; Bacteria - 302; Metazoa - 0; Fungi - 4; Plants - 3124; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_id AT1G28590.1p transcript_id AT1G28590.1 protein_id AT1G28590.1p transcript_id AT1G28590.1
At1g28591	chr1:010049485	0.0	C/10049485-10049541,10049629-10049857	AT1G28591.1 [TAIR10] pseudogene
At1g28600	chr1:010051228	0.0	C/10051228-10051517,10051609-10051885,10052019-10052167,10052254-10052466,10052821-10053073	AT1G28600.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F1K23.28, F1K23_28 go_component cell wall|GO:0005618|15593128|IDA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28610.2); Has 3320 Blast hits to 3269 proteins in 145 species: Archae - 0; Bacteria - 177; Metazoa - 0; Fungi - 0; Plants - 3140; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT1G28600.1p transcript_id AT1G28600.1 protein_id AT1G28600.1p transcript_id AT1G28600.1
At1g28600	chr1:010051968	0.0	C/10051968-10052167,10052254-10052466,10052821-10053073	AT1G28600.2 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F1K23.28, F1K23_28 go_component cell wall|GO:0005618|15593128|IDA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28600.2p transcript_id AT1G28600.2 protein_id AT1G28600.2p transcript_id AT1G28600.2
At1g28610	chr1:010053877	0.0	C/10053877-10054136,10054234-10054510,10054615-10054760,10054866-10055081,10055413-10055665	AT1G28610.2 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F1K23.16, F1K23_16 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS go_function lipase activity|GO:0016298||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G27360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G28610.2p transcript_id AT1G28610.2 protein_id AT1G28610.2p transcript_id AT1G28610.2
At1g28610	chr1:010054477	0.0	C/10054477-10054760,10054866-10055081,10055413-10055665	AT1G28610.1 CDS GDSL-like Lipase/Acylhydrolase superfamily protein [TAIR10] CDS gene_syn F1K23.16, F1K23_16 go_component endomembrane system|GO:0012505||IEA go_function carboxylesterase activity|GO:0004091||ISS go_function lipase activity|GO:0016298||ISS product GDSL-like Lipase/Acylhydrolase superfamily protein note GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, carboxylesterase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28600.2); Has 2710 Blast hits to 2687 proteins in 65 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 2689; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G28610.1p transcript_id AT1G28610.1 protein_id AT1G28610.1p transcript_id AT1G28610.1
At1g28620	chr1:010056193	0.0	C/10056193-10057819	AT1G28620.1 [TAI