CODE At5g55240 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr5 TITL AT5G55240.1 CDS gene_syn MCO15.19, MCO15_19 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function calcium ion binding|GO:0005509||ISS product caleosin-related family protein / embryo-specific protein, putative note caleosin-related family protein / embryo-specific protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ATS1 (ARABIDOPSIS THALIANA SEED GENE 1); calcium ion binding (TAIR:AT4G26740.1); Has 228 Blast hits to 223 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 179; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT5G55240.1p transcript_id AT5G55240.1 protein_id AT5G55240.1p transcript_id AT5G55240.1 COOR W/22405963-22406077,22406166-22406315,22406418-22406503,22406588-22406682,22406779-22406904,22406999-22407158 HITS SALK_146509.56.00.n [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL e-111 LOCN 1000-Promotor COOR C/22404912-22405114,22405417-22405476 HITS GABI_077C04 [Seq] [GABI-Kat] [SimpleSearch] [Confirmation] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat Confirmed EVAL e-168 LOCN 1000-Promotor COOR W/22404987-22405301 NOTE at5g55230 HITS RAFL14-47-M15 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 3e-98 LOCN 1000-Promotor COOR W/22405003-22405187,22405202-22405304,22405324-22405361,22405370-22405432 HITS SAIL_229_H03 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL FST EVAL 0.0 LOCN 300-UTR5 COOR C/22405055-22405668 HITS SAIL_24_G08 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL FST EVAL 0.0 LOCN 1000-Promotor COOR C/22405055-22405494 HITS SAIL_918_A06 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL FST EVAL 0.0 LOCN 300-UTR5 COOR C/22405267-22405702 HITS GABI_740D07 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 1e-12 LOCN 1000-Promotor COOR W/22405333-22405380 HITS SALK_003268.53.35.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/22405342-22405791 HITS SALK_003296.54.80.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/22405342-22405784 HITS SALK_147548.16.10.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 2e-38 LOCN 1000-Promotor COOR W/22405420-22405567 HITS SALK_116310.48.45.x SALK T-DNA Homozygous Knockout Line for At5g55240 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 0.0 LOCN 300-UTR5 COOR W/22405683-22406026 NOTE At5g55240 HITS SALK_112034.51.00.x SALK T-DNA Homozygous Knockout Line for At5g55240 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 0.0 LOCN 300-UTR5 COOR W/22405688-22406119 NOTE At5g55240 HITS SALK_121775.35.20.x SALK T-DNA Homozygous Knockout Line for At5g55240 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL e-176 LOCN 300-UTR5 COOR W/22405724-22406159 NOTE At5g55240 HITS SALK_122331.53.05.x SALK T-DNA Homozygous Knockout Line for At5g55240 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 0.0 LOCN 300-UTR5 COOR W/22405811-22406265 NOTE At5g55240 HITS RAFL15-18-N17 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 96.98 LOCN Exon COOR W/22405926-22406077,22406166-22406315,22406418-22406503,22406588-22406682,22406779-22406904,22406999-22407353 HITS R20742 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 96.98 LOCN Exon COOR W/22405926-22406077,22406166-22406315,22406418-22406503,22406588-22406682,22406779-22406904,22406999-22407353 NOTE BT003943 HITS U20742 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN Exon COOR W/22405963-22406077,22406166-22406315,22406418-22406503,22406588-22406682,22406779-22406904,22406999-22407189 NOTE BT005029 HITS G20742 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR W/22405963-22406077,22406166-22406315,22406418-22406503,22406588-22406682,22406779-22406904,22406999-22407189 NOTE U20742 BT005029 pENTR_Sfi HITS SALK_018335.27.35.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 3e-28 LOCN Exon COOR W/22405978-22406093 HITS SALK_018335.29.99.f [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 3e-28 LOCN Exon COOR W/22405978-22406093 HITS SALK_121775.28.30.x SALK T-DNA Homozygous Knockout Line for At5g55240 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 1e-12 LOCN Exon COOR W/22406073-22406120 NOTE At5g55240 HITS SALK_046559.41.55.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 6e-97 LOCN Exon COOR C/22406407-22406597 HITS SALK_046559.56.00.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL e-104 LOCN Exon COOR C/22406407-22406597 HITS SALK_050108.22.70.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 5e-17 LOCN Intron COOR C/22406420-22406520 HITS SAIL_91_G08 SAIL T-DNA Homozygous Knockout Line for At5g55240
[Seq] [SAIL HM Collection by Salk] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL T-DNA HM EVAL 0.0 LOCN Exon COOR W/22406810-22407585 NOTE At5g55240 HITS RAFL15-18-N17 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR W/22406826-22406903,22406998-22407351