CODE At5g04390 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
       [Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern] 
       [YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap] 
       [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] 
TYPE Gene
CHRO chr5
TITL AT5G04390.1 CDS  gene_syn T19N18.120, T19N18_120  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G10470.1); Has 995 Blast hits to 947 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 0; Plants - 484; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G04390.1p  transcript_id AT5G04390.1  protein_id AT5G04390.1p  transcript_id AT5G04390.1  
COOR W/1239166-1240254

HITS RATM12-5302-1_G [Seq] [RARGE] [Order] 
TYPE RIKEN FST
EVAL 0.0
LOCN 1000-Promotor
COOR C/1237470-1238169
HITS SAIL_797_D12 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] 
TYPE SAIL FST
EVAL e-124
LOCN 1000-Promotor
COOR C/1238139-1238372
HITS RATM12-5302-1_H [Seq] [RARGE] [Order] 
TYPE RIKEN FST
EVAL 6e-86
LOCN 1000-Promotor
COOR W/1238167-1238351
HITS BX830993 [GenBank] [Order] 
TYPE GSLT cDNA
EVAL 0.0
LOCN Exon
COOR C/1238921-1240219
HITS SAIL_441_G10 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] 
TYPE SAIL FST
EVAL 0.0
LOCN 300-UTR5
COOR W/1239034-1239649
HITS RAFL15-10-C05 [NCBI] [Order from RIKEN BRC] 
TYPE RIKEN FL cDNA
EVAL 98.68
LOCN Exon
COOR W/1239100-1240518
HITS R20610 [SSP] [About & Citation] [NCBI] [Order] - click RAFL 
TYPE SSP cDNA
EVAL 98.68
LOCN Exon
COOR W/1239100-1240518
NOTE BT003885
HITS PYAt5g04390 [Seq] [About Peking Yale TF] [Order from ABRC] (ORF amplified by RT-PCR and cloned into the Gateway( TM) system; 5' and 3' end sequencing has been performed on this clone.) 
TYPE PY TF
EVAL 0.0
LOCN Exon
COOR W/1239165-1239701
HITS U20610 [SSP] [About & Citation] [NCBI] [Order from ABRC] 
TYPE SSP pUni Clone
EVAL 100.00
LOCN Exon
COOR W/1239166-1240285
NOTE BT005031
HITS G20610  Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] 
TYPE GateWay Clone
EVAL 100.00
LOCN Exon
COOR W/1239166-1240285
NOTE U20610 BT005031 pENTR_Sfi
HITS PYAt5g04390 [Seq] [About Peking Yale TF] [Order from ABRC] (ORF amplified by RT-PCR and cloned into the Gateway( TM) system; 5' and 3' end sequencing has been performed on this clone.) 
TYPE PY TF
EVAL 0.0
LOCN Exon
COOR C/1239709-1240251
HITS RAFL15-10-C05 [NCBI] [Order from RIKEN BRC] 
TYPE RIKEN EST
EVAL 2e-90
LOCN Exon
COOR W/1240096-1240283,1240292-1240356,1240366-1240409,1240419-1240517