CODE At5g04360 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr5 TITL AT5G04360.1 CDS gene_syn ATLDA, ATPU1, LIMIT DEXTRINASE, PU1, PULLULANASE, PULLULANASE 1, T19N18.90, T19N18_90 gene ATLDA function Encodes an enzyme thought to be involved in the hydrolysis of the & 945;-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_process carbohydrate metabolic process|GO:0005975||ISS go_process starch catabolic process|GO:0005983|15862090|TAS go_process starch catabolic process|GO:0005983|18815382|IMP go_process starch biosynthetic process|GO:0019252|18815382|IMP go_function alpha-amylase activity|GO:0004556||ISS go_function limit dextrinase activity|GO:0010303|15849301|IDA go_function pullulanase activity|GO:0051060|18815382|IDA product ATLDA (LIMIT DEXTRINASE); alpha-amylase/ limit dextrinase/ pullulanase note LIMIT DEXTRINASE (ATLDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase (TAIR:AT4G09020.1); Has 3780 Blast hits to 3779 proteins in 911 species: Archae - 39; Bacteria - 3120; Metazoa - 44; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink). protein_id AT5G04360.1p transcript_id AT5G04360.1 protein_id AT5G04360.1p transcript_id AT5G04360.1 COOR W/1221566-1221805,1221897-1222038,1222112-1222164,1222262-1222370,1222520-1222656,1222747-1222946,1223037-1223186,1223476-1223536,1223713-1223833,1224065-1224155,1224234-1224327,1224510-1224605,1224704-1224844,1225036-1225086,1225235-1225305,1225422-1225514,1225648-1225738,1226054-1226125,1226371-1226427,1226514-1226582,1226677-1226733,1226946-1227020,1227162-1227250,1227335-1227412,1227517-1227655,1227872-1227981,1228072-1228171,1228289-1228399 HITS SALK_119447.18.35.x SALK T-DNA Homozygous Knockout Line for At5g04350 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 3e-49 LOCN 1000-Promotor COOR W/1220964-1221146 NOTE At5g04350 HITS SALK_151314.12.15.n [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 2e-12 LOCN 1000-Promotor COOR W/1221041-1221137 HITS SALK_151314.14.50.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 1e-08 LOCN 1000-Promotor COOR W/1221081-1221143 HITS SALK_063951.52.80.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL e-103 LOCN 300-UTR5 COOR C/1221143-1221331 HITS R16393 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.97 LOCN Exon COOR W/1221530-1221805,1221897-1222038,1222112-1222164,1222262-1222370,1222520-1222656,1222747-1222946,1223037-1223186,1223476-1223536,1223713-1223833,1224065-1224155,1224234-1224327,1224510-1224605,1224704-1224844,1225036-1225086,1225235-1225305,1225422-1225514,1225648-1225738,1226054-1226125,1226371-1226427,1226514-1226582,1226677-1226733,1226946-1227020,1227162-1227250,1227335-1227412,1227517-1227652,1227870-1227981,1228072-1228171,1228289-1228504 NOTE BT002411 HITS FLAG_024H06 [Seq] [About INRA/FLAG FST] [FLAGdb] [Publication] [pGKB5 Vector] [Order from INRA] TYPE FLAG FST EVAL 0.0 LOCN Intron COOR C/1222325-1222673 HITS FLAG_080G07 [Seq] [About INRA/FLAG FST] [FLAGdb] [Publication] [pGKB5 Vector] [Order from INRA] TYPE FLAG FST EVAL 0.0 LOCN Intron COOR C/1222325-1222673 HITS FLAG_081E05 [Seq] [About INRA/FLAG FST] [FLAGdb] [Publication] [pGKB5 Vector] [Order from INRA] TYPE FLAG FST EVAL 0.0 LOCN Intron COOR C/1222325-1222673 HITS WiscDsLoxHs032_03D [Seq] [Wisc & Vector] [Order from ABRC] TYPE Wisc FST EVAL 6e-96 LOCN Intron COOR C/1222806-1222994 HITS SALK_060765.55.75.x SALK T-DNA Homozygous Knockout Line for At5g04360 by community
[seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM (c) EVAL 0.0 LOCN Exon COOR W/1223069-1223474 NOTE At5g04360 CS25085 HITS GABI_470F10 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 2e-05 LOCN Intron COOR W/1223328-1223351 HITS CSHL_GT7150 [Seq] [CSHL Ds] [Detail] [Order] TYPE CSHL FST EVAL 0.0 LOCN Exon COOR C/1224115-1224517 HITS CSHL_GT7150 [Seq] [CSHL Ds] [Detail] [Order] TYPE CSHL FST EVAL 0.0 LOCN Exon COOR W/1224532-1224994 HITS BX841647 [GenBank] [Order] TYPE GSLT cDNA EVAL 3e-80 LOCN Exon COOR W/1224695-1224846,1225038-1225086,1225235-1225305,1225422-1225514,1225648-1225738,1226054-1226125,1226371-1226425,1226512-1226582,1226677-1226731,1226944-1227018,1227160-1227251,1227336-1227413,1227517-1227656,1227873-1227981,1228072-1228171,1228290-1228449 HITS GABI_018C08 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL e-134 LOCN Intron COOR C/1225593-1225838 HITS GABI_018C08 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL e-130 LOCN Intron COOR C/1225596-1225846 HITS GABI_018C08 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 1e-76 LOCN Intron COOR C/1225691-1225838 HITS SK18788 [Seq] [About SK collection] [Vector pSKI015] TYPE SK FST EVAL 0.0 LOCN Intron COOR W/1225839-1226224 HITS SAIL_627_G11 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL FST EVAL 0.0 LOCN Intron COOR W/1226294-1227104 HITS SAIL_294_A10 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL FST EVAL e-142 LOCN Intron COOR W/1226780-1227321 HITS BX834096 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/1227573-1227652,1227870-1227981,1228072-1228168,1228286-1228611 HITS RAFL07-12-C04 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-119 LOCN Exon COOR W/1227870-1227981,1228072-1228168,1228286-1228502 HITS GABI_350F08 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 5e-13 LOCN Intron COOR C/1227948-1228016 HITS SALK_112124.18.55.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 2e-67 LOCN Intron COOR C/1227996-1228268 HITS RATM11-4613-1_H [Seq] [RARGE] [Order] TYPE RIKEN FST EVAL 0.0 LOCN 300-UTR3 COOR C/1228209-1228645 HITS GABI_293C07 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 0.0 LOCN Exon COOR W/1228335-1228748 HITS FLAG_350A05 [Seq] [About INRA/FLAG FST] [FLAGdb] [Publication] [pGKB5 Vector] [Order from INRA] TYPE FLAG FST EVAL 0.0 LOCN Exon COOR W/1228395-1228776