CODE At3g11500 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr3 TITL AT3G11500.1 CDS go_component nucleolus|GO:0005730|15496452|IDA go_component nucleus|GO:0005634||ISS go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS go_function molecular_function|GO:0003674||ND product small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative note small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) (TAIR:AT2G23930.1); Has 921 Blast hits to 921 proteins in 197 species: Archae - 84; Bacteria - 0; Metazoa - 385; Fungi - 191; Plants - 117; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). protein_id AT3G11500.1p transcript_id AT3G11500.1 protein_id AT3G11500.1p transcript_id AT3G11500.1 COOR C/3621626-3621685,3621774-3621895,3622282-3622304,3622440-3622474 HITS BX825320 [GenBank] [Order] TYPE GSLT cDNA EVAL e-154 LOCN Exon COOR C/3621412-3621686,3621775-3621895,3622282-3622301,3622437-3622573 HITS R16944 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 100.00 LOCN Exon COOR C/3621412-3621685,3621774-3621895,3622282-3622304,3622440-3622550 NOTE AY062818 HITS RAFL06-10-G07 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-152 LOCN Exon COOR C/3621415-3621686,3621775-3621895,3622282-3622301,3622437-3622551 HITS U16944 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP Gateway Clone EVAL 100.00 LOCN Exon COOR C/3621477-3621685,3621774-3621895,3622282-3622304,3622440-3622474 NOTE U16944 BT001203 pENTR-TOPO HITS BX825656 [GenBank] [Order] TYPE GSLT cDNA EVAL 2e-87 LOCN Exon COOR C/3621516-3621686,3621775-3621895,3622282-3622301,3622437-3622592 HITS RATM11-6504-1_H [Seq] [RARGE] [Order] TYPE RIKEN FST EVAL 0.0 LOCN Intron COOR C/3621520-3622201 HITS SALK_049355.51.80.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 0.0 LOCN Intron COOR C/3621521-3621957 HITS SALK_026590.38.15.x SALK T-DNA Homozygous Knockout Line for At3g11500 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 7e-92 LOCN 300-UTR3 COOR W/3621541-3621786 NOTE At3g11500 HITS SALK_049355.49.00.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 1e-99 LOCN Intron COOR C/3621723-3621957 HITS SK25555 [Seq] [About SK collection] [Vector pSKI015] TYPE SK FST EVAL 0.0 LOCN Exon COOR C/3621901-3622467 HITS SAIL_69_G07 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL FST EVAL e-102 LOCN Intron COOR C/3621912-3622176 HITS CSHL_GT22294 [Seq] [CSHL Ds] [Detail] [Order] TYPE CSHL FST EVAL 5e-87 LOCN Intron COOR C/3622009-3622190 HITS RATM11-6504-1_G [Seq] [RARGE] [Order] TYPE RIKEN FST EVAL 0.0 LOCN Intron COOR W/3622193-3622857 HITS SALK_065001.16.05.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 4e-20 LOCN 300-UTR5 COOR C/3622393-3622485 HITS SALK_094149.47.70.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 9e-68 LOCN 300-UTR5 COOR C/3622445-3622671 HITS SALK_129415.50.00.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 1e-67 LOCN 300-UTR5 COOR C/3622463-3622661 HITS SALK_119722.49.40.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 0.0 LOCN 300-UTR5 COOR W/3622589-3623071 HITS SALK_079382.19.15.n [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 7e-57 LOCN 300-UTR5 COOR W/3622629-3622992 HITS SALK_062774.45.20.x SALK T-DNA Homozygous Knockout Line for At3g11505 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 5e-57 LOCN 300-UTR5 COOR W/3622654-3622765,3622869-3622948 NOTE At3g11505 HITS SALK_062774.45.20.x SALK T-DNA Homozygous Knockout Line for At3g11505 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 1e-52 LOCN 300-UTR5 COOR W/3622662-3622765,3622869-3622948 NOTE At3g11505 HITS SALK_129255.49.70.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 0.0 LOCN 300-UTR5 COOR W/3622673-3623130 HITS SALK_079382.19.15.n [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 1e-50 LOCN 300-UTR5 COOR W/3622676-3622992 HITS SALK_126162.46.00.x SALK T-DNA Homozygous Knockout Line for At3g11505 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 0.0 LOCN 300-UTR5 COOR W/3622686-3623119 NOTE At3g11505 HITS WiscDsLox293-296invP24 [Seq] [Wisc & Vector] [Order from ABRC] TYPE Wisc FST EVAL 0.0 LOCN 1000-Promotor COOR W/3622830-3623577 HITS SALK_039630.56.00.x SALK T-DNA Homozygous Knockout Line for At3g11505 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 0.0 LOCN 1000-Promotor COOR W/3622864-3623228 NOTE At3g11505 HITS GABI_348C02 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 7e-27 LOCN 1000-Promotor COOR C/3622936-3622999 HITS SALK_091681.51.65.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL e-125 LOCN 1000-Promotor COOR W/3622947-3623180 HITS GABI_348C03 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 4e-13 LOCN 1000-Promotor COOR C/3622949-3622993 HITS SALK_017970.29.99.f [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 5e-27 LOCN 1000-Promotor COOR C/3623225-3623286 HITS SALK_017970.52.70.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 4e-28 LOCN 1000-Promotor COOR C/3623225-3623286 HITS BX822270 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN 1000-Promotor COOR C/3623457-3623825,3623921-3624051,3624134-3624218,3624316-3624360,3624448-3624568,3624865-3624919