CODE At1g66730 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G66730.1 CDS gene_syn F4N21.14, F4N21_14 go_component chloroplast|GO:0009507||IEA go_process DNA replication|GO:0006260||IEA go_process DNA repair|GO:0006281||IEA go_process DNA recombination|GO:0006310||IEA go_function DNA binding|GO:0003677||IEA go_function DNA ligase (ATP) activity|GO:0003910||IEA go_function ATP binding|GO:0005524||IEA go_process DNA replication|GO:0006260||ISS go_process DNA repair|GO:0006281||ISS go_process DNA recombination|GO:0006310||ISS go_function DNA ligase (ATP) activity|GO:0003910||ISS go_function ATP binding|GO:0005524||ISS product ATP dependent DNA ligase family protein note ATP dependent DNA ligase family protein; FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), DNA repair metallo-beta-lactamase (InterPro:IPR011084), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977); BEST Arabidopsis thaliana protein match is: ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1); ATP binding / DNA binding / DNA ligase (ATP) (TAIR:AT1G08130.1); Has 3133 Blast hits to 3071 proteins in 628 species: Archae - 227; Bacteria - 996; Metazoa - 564; Fungi - 431; Plants - 130; Viruses - 148; Other Eukaryotes - 637 (source: NCBI BLink). protein_id AT1G66730.1p transcript_id AT1G66730.1 protein_id AT1G66730.1p transcript_id AT1G66730.1 COOR W/24884991-24887259,24887435-24887552,24887644-24887725,24887811-24887913,24888016-24888112,24888399-24888501,24888579-24888710,24888833-24888880,24889194-24889291,24889382-24889447,24889692-24889851,24890027-24890134,24890352-24890401,24890494-24890528,24890634-24890707,24890803-24890964,24891044-24891132,24891264-24891414,24891515-24891823 HITS BX841882 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN 1000-Promotor COOR W/24883931-24884559 HITS SAIL_875_G02 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL FST EVAL 0.0 LOCN 1000-Promotor COOR C/24883973-24884381 HITS GABI_541C06 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 2e-64 LOCN 1000-Promotor COOR W/24884296-24884443 HITS GABI_204C02 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 1e-99 LOCN 300-UTR5 COOR C/24884689-24884871 HITS WiscDsLox353C11 [Seq] [Wisc & Vector] [Order from ABRC] TYPE Wisc FST EVAL 0.0 LOCN 300-UTR5 COOR W/24884713-24885184 HITS FLAG_325E07 [Seq] [About INRA/FLAG FST] [FLAGdb] [Publication] [pGKB5 Vector] [Order from INRA] TYPE FLAG FST EVAL 9e-13 LOCN 300-UTR5 COOR W/24884726-24884826 HITS SK14676 [Seq] [About SK collection] [Vector pSKI015] TYPE SK FST EVAL 0.0 LOCN 300-UTR5 COOR W/24884807-24885235 HITS GABI_204C02 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 0.0 LOCN 300-UTR5 COOR W/24884884-24885377 HITS GABI_945F02 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 0.0 LOCN 300-UTR5 COOR W/24884939-24885437 HITS CSHL_GT21552 [Seq] [CSHL Ds] [Detail] [Order] TYPE CSHL FST EVAL e-121 LOCN 300-UTR5 COOR W/24884942-24885241 HITS CSHL_GT5585 [Seq] [CSHL Ds] [Detail] [Order] TYPE CSHL FST EVAL e-109 LOCN 300-UTR5 COOR W/24884942-24885216 HITS WiscDsLoxHs200_04H [Seq] [Wisc & Vector] [Order from ABRC] TYPE Wisc FST EVAL 6e-09 LOCN Exon COOR C/24885536-24885626 HITS CSHL_GT18874 [Seq] [CSHL Ds] [Detail] [Order] TYPE CSHL FST EVAL 0.0 LOCN Exon COOR C/24885837-24886366 HITS GABI_185E11 [Seq] [GABI-Kat] [SimpleSearch] [Confirmation] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat Confirmed EVAL 2e-37 LOCN Exon COOR C/24886352-24886432 NOTE at1g66730 HITS GABI_185E10 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 7e-50 LOCN Exon COOR C/24886352-24886454 HITS GABI_185F10 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 1e-41 LOCN Exon COOR C/24886352-24886436 HITS SAIL_362_G09 SAIL T-DNA Homozygous Knockout Line for AT1G66730
[Seq] [SAIL HM Collection by Salk] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL T-DNA HM EVAL 0.0 LOCN Exon COOR C/24886852-24887189 NOTE AT1G66730 HITS GABI_182E11 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] TYPE GABI-Kat FST EVAL 1e-58 LOCN Exon COOR W/24886956-24887081 HITS FLAG_048H10 [Seq] [About INRA/FLAG FST] [FLAGdb] [Publication] [pGKB5 Vector] [Order from INRA] TYPE FLAG FST EVAL 0.0 LOCN Exon COOR W/24887860-24888201 HITS FLAG_437H07 [Seq] [About INRA/FLAG FST] [FLAGdb] [Publication] [pGKB5 Vector] [Order from INRA] TYPE FLAG FST EVAL 0.0 LOCN Intron COOR C/24888202-24888895 HITS SALK_151907.32.60.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 2e-69 LOCN Intron COOR W/24888507-24888651 HITS SK20595 [Seq] [About SK collection] [Vector pSKI015] TYPE SK FST EVAL 0.0 LOCN Exon COOR W/24889218-24889643 HITS SALK_065307.48.70.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL e-162 LOCN Exon COOR C/24889318-24889694 HITS SALK_135557.18.65.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 8e-07 LOCN Intron COOR C/24889897-24889995 HITS SALK_079499.51.05.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 3e-42 LOCN Exon COOR W/24891076-24891161 HITS SALK_079512.50.20.x [seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA EVAL 3e-42 LOCN Exon COOR W/24891076-24891161 HITS RATM12-0955-1_H [Seq] [RARGE] [Order] TYPE RIKEN FST EVAL e-180 LOCN 300-UTR3 COOR C/24891522-24891843 HITS At_oRNA_278 [About Orphan Transcript DB] [AtoRNA Info] TYPE oRNA EST EVAL 100.00 LOCN 300-UTR3 COOR W/24891931-24892046 HITS SAIL_795_D11 [Seq] [About SAIL] [Order from ABRC] [Order from NASC] TYPE SAIL FST EVAL 3e-20 LOCN 300-UTR3 COOR W/24892060-24892110 HITS SALK_123420.25.60.x SALK T-DNA Homozygous Knockout Line for At1g66740 [seq] [Salk HM Collection] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC] TYPE SALK T-DNA HM EVAL 2e-16 LOCN 300-UTR3 COOR W/24892123-24892164 NOTE At1g66740