CODE AT1G01240.4 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [NCBI] [KEGG] [Protein Interaction] [AtGene Express] [AtGDB View] 
       [e-FP Browser] [AthaMap] [Phosphat] [Methylome] [UToronto BAR Expression Angler] [Araport ] [TAIR ] 
       Genome Browsers: [1001 Genomes] [1001 Epigenomes] [ABA TF Network] 
TYPE Gene
CHRO chr1
TITL AT1G01240.4 CDS AT1G01240 ID=AT1G01240.4; Parent=AT1G01240; Name=AT1G01240.4; Note=transmembrane protein; Dbxref=PMID:12912986, PMID:15703057, PMID:23517122, locus:2035242; computational_description=unknown protein%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1)%3B Has 95 Blast hits to 78 proteins in 16 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 11%3B Fungi - 0%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; locus_type=protein_coding
COOR W/100683-101678

HITS GABI_086F12 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] [Order from ABRC] 
TYPE GABI-Kat FST
EVAL e-115
LOCN 1000-Promotor
COOR W/99783-99996
NOTE - -
HITS GABI_086H10 [Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] [Order from ABRC] 
TYPE GABI-Kat FST
EVAL e-116
LOCN 1000-Promotor
COOR W/99783-99996
NOTE - -
HITS SALKseq_057922.0   T-DNA NextG Sequences by Salk Institute for SALK, SAIL, GABI(GK) and Wisc lines.
       By comparison with old FSTs, The NG sequences are mapped on the reverse complimentary strand.  
       We change the mapping direction to its reverse strand for the isect primer design purpose.   
       [GenBank] [iSect Primer] [ORDER ABRC => TAIR Polymorphism/Allele Search] [T-DNA Seq Next Generation sequencing evidences by Salk] 
TYPE T-DNA Seq NextG
EVAL 0
LOCN 1000-Promotor
COOR C/99825-99825
NOTE KO382360 Salk 40K 1:99761 GATTCTCTCTTTAGCCAACACGTGTTGTCAATCCAGCTGTTTCAGATGCTTACCAAGAAATTGACGCTTAGACAACTT
HITS SALK_004740.41.35.x [Seq] [About & Citation] [Vector] [Order from ABRC] [Order from NASC]  
TYPE SALK T-DNA
EVAL 3e-15
LOCN 1000-Promotor
COOR W/99834-99875
HITS SALK_004750.43.45.x [Seq] [About & Citation] [Vector] [Order from ABRC] [Order from NASC]  
TYPE SALK T-DNA
EVAL 4e-15
LOCN 1000-Promotor
COOR W/99834-99875
HITS SALK_096370.51.75.x [Seq] [About & Citation] [Vector] [Order from ABRC] [Order from NASC]  
TYPE SALK T-DNA
EVAL 2e-16
LOCN 1000-Promotor
COOR W/99834-99875
HITS SALK_057922.40.75.x [Seq] [About & Citation] [Vector] [Order from ABRC] [Order from NASC]  
TYPE SALK T-DNA
EVAL 1e-14
LOCN 1000-Promotor
COOR W/99837-99875
HITS SALK_057922.44.40.x [Seq] [About & Citation] [Vector] [Order from ABRC] [Order from NASC]  
TYPE SALK T-DNA
EVAL 1e-14
LOCN 1000-Promotor
COOR W/99837-99875
HITS CSHL_ET11583 [Seq] [CSHL Ds] [Detail] [Order] 
TYPE CSHL FST
EVAL 0.0
LOCN 1000-Promotor
COOR W/99861-100524
HITS SALK_104275.33.95.x  SALK T-DNA Homozygous Knockout Line for At1g01240   [Seq] [Salk HM Collection] [About & Citation] [Vector] [Order from ABRC] [Order from NASC] 
TYPE SALK T-DNA HM
EVAL 6e-26
LOCN 1000-Promotor
COOR C/99872-100018
NOTE At1g01240
HITS BX837698 [GenBank] [Order] 
TYPE GSLT cDNA
EVAL 0.0
LOCN 300-UTR5
COOR W/99894-100647
HITS R14913 [SSP] [About & Citation] [NCBI] [Order] - click RAFL 
TYPE SSP cDNA
EVAL 99.84
LOCN Exon
COOR W/99922-100031,100657-101832
NOTE AF428444
HITS R11287 [SSP] [About & Citation] [NCBI] [Order] - click RAFL 
TYPE SSP cDNA
EVAL 96.59
LOCN Exon
COOR W/99936-100031,100657-101805
NOTE AY056171
HITS AY087324 [GenBank] 
TYPE Community cDNA
EVAL 99.58
LOCN Exon
COOR W/99986-100031,100657-101801
HITS BX818598 [GenBank] [Order] 
TYPE GSLT cDNA
EVAL 0.0
LOCN Exon
COOR W/100001-100030,100656-101694
HITS BX815637 [GenBank] [Order] 
TYPE GSLT cDNA
EVAL 0.0
LOCN Exon
COOR W/100031-100219,100656-101749
HITS SALKseq_042710.1   T-DNA NextG Sequences by Salk Institute for SALK, SAIL, GABI(GK) and Wisc lines.
       By comparison with old FSTs, The NG sequences are mapped on the reverse complimentary strand.  
       We change the mapping direction to its reverse strand for the isect primer design purpose.   
       [GenBank] [iSect Primer] [ORDER ABRC => TAIR Polymorphism/Allele Search] [T-DNA Seq Next Generation sequencing evidences by Salk] 
TYPE T-DNA Seq NextG
EVAL 0
LOCN 1000-Promotor
COOR W/100256-100256
NOTE KO395004 Salk 20K 1:100255 TGCAGAACCAAAAAAAAAGAAAGTCTTGAGCAGAGCAAACTACAAAGATCATATTGCCAAAACAAATTGACGCTTAGAC
HITS Wiscseq_DsLoxHs075_11B.1   T-DNA NextG Sequences by Salk Institute for SALK, SAIL, GABI(GK) and Wisc lines.
       By comparison with old FSTs, The NG sequences are mapped on the reverse complimentary strand.  
       We change the mapping direction to its reverse strand for the isect primer design purpose.   
       [GenBank] [iSect Primer] [ORDER ABRC => TAIR Polymorphism/Allele Search] [T-DNA Seq Next Generation sequencing evidences by Salk] 
TYPE T-DNA Seq NextG
EVAL 0
LOCN 300-UTR5
COOR C/100478-100478
NOTE KG813655 Wisc 20K 1:100478 TGTTTAAGATTTCATATACGTTGAATTGGTTTTGATTGAATATATTTTGGTTCCCAGACGTTGCGTGTATTATTTAATGT
HITS U11287 [SSP] [About & Citation] [NCBI] [Order from ABRC] 
TYPE SSP pUni Clone
EVAL 100.00
LOCN Exon
COOR W/100683-101709
NOTE AY091196
HITS G11287  Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] 
TYPE GateWay Clone
EVAL 100.00
LOCN Exon
COOR W/100683-101709
NOTE U11287 AY091196 pENTR_Sfi
HITS BX834584 [GenBank] [Order] 
TYPE GSLT cDNA
EVAL 0.0
LOCN Exon
COOR C/101160-101780
HITS GABIseq_025D05.1   T-DNA NextG Sequences by Salk Institute for SALK, SAIL, GABI(GK) and Wisc lines.
       By comparison with old FSTs, The NG sequences are mapped on the reverse complimentary strand.  
       We change the mapping direction to its reverse strand for the isect primer design purpose.   
       [GenBank] [iSect Primer] [ORDER ABRC => TAIR Polymorphism/Allele Search] [T-DNA Seq Next Generation sequencing evidences by Salk] 
TYPE T-DNA Seq NextG
EVAL 0
LOCN Exon
COOR C/101214-101214
NOTE KG780212 GABI 10K 1:101191 AAACTCCACAAGAGTATTCACTCCTCGAGCGGAGAAAAAGGGTTTAAAACAGCGGTTAAATCGCCATGGAAGCAAGGAGTTTCATGTCCGGGAAATCTAC
HITS RAFL08-14-L09 [NCBI] [Order from RIKEN BRC] 
TYPE RIKEN EST
EVAL 0.0
LOCN Exon
COOR W/101376-101802
HITS Wiscseq_DsLox465H10.1   T-DNA NextG Sequences by Salk Institute for SALK, SAIL, GABI(GK) and Wisc lines.
       By comparison with old FSTs, The NG sequences are mapped on the reverse complimentary strand.  
       We change the mapping direction to its reverse strand for the isect primer design purpose.   
       [GenBank] [iSect Primer] [ORDER ABRC => TAIR Polymorphism/Allele Search] [T-DNA Seq Next Generation sequencing evidences by Salk] 
TYPE T-DNA Seq NextG
EVAL 0
LOCN Exon
COOR C/101415-101415
NOTE KG806792 Wisc 10K 1:101393 TTCTCAAACCAGGGCAAGAGAAGCAGAGAGAGCAGCGAGAGAAGCTTGCGCTGAGAAAGACCGTGTGATAACAATCTGGACGCATTGACGCTTAGACAAC
HITS SALK_035378.45.65.x  SALK T-DNA Homozygous Knockout Line for At1g01240   [Seq] [Salk HM Collection] [About & Citation] [Vector] [Order from ABRC] [Order from NASC] 
TYPE SALK T-DNA HM
EVAL 8e-18
LOCN Exon
COOR C/101464-101544
NOTE At1g01240
HITS RAFL09-08-A10 [NCBI] [Order from RIKEN BRC] 
TYPE RIKEN EST
EVAL e-109
LOCN Exon
COOR W/101533-101757
HITS RAFL09-71-K16 [NCBI] [Order from RIKEN BRC] 
TYPE RIKEN EST
EVAL 5e-95
LOCN Exon
COOR W/101637-101832
HITS SALKseq_035378.0   T-DNA NextG Sequences by Salk Institute for SALK, SAIL, GABI(GK) and Wisc lines.
       By comparison with old FSTs, The NG sequences are mapped on the reverse complimentary strand.  
       We change the mapping direction to its reverse strand for the isect primer design purpose.   
       [GenBank] [iSect Primer] [ORDER ABRC => TAIR Polymorphism/Allele Search] [T-DNA Seq Next Generation sequencing evidences by Salk] 
TYPE T-DNA Seq NextG
EVAL 0
LOCN 300-UTR3
COOR C/101831-101831
NOTE KO407999 Salk 10K 1:101821 TAAAATTGTGTGTATATTTTGTTAATGTATGTATTGTGTGATGTTTGTGTAAATTTAATCTTCTGTAGAAGTTTATTTG