CLON SALKseq_132704.0  T-DNA NextG Sequences by Salk Institute for SALK, SAIL, GABI(GK) and Wisc lines.
By comparison with old FSTs, The NG sequences are mapped on the reverse complimentary strand.
We change the mapping direction to its reverse strand for the isect primer design purpose.
[GenBank] [iSect Primer] [ORDER ABRC => TAIR Polymorphism/Allele Search] [T-DNA Seq Next Generation sequencing evidences by Salk] TYPE T-DNA Seq NextG CHRO chr1 EVAL 0 COOR C/64364-64364 NOTE KO397330 Salk 20K 1:64235 CCAACTCCAGAATGTTTACTATTCATTATACATGTTCAACATTGACGCTTAGACAACTTAATACACTGAGATCGGAAGA HITS AT1G01130.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01130.1 CDS ID=AT1G01130.1; Parent=AT1G01130; Name=AT1G01130.1; Note=CBL-interacting Serine/Threonine-kinase; conf_class=3; computational_description=CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1)%3B Has 176 Blast hits to 176 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 176%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, PMID:20226671, locus:2035357; locus_type=protein_coding LOCN 1000-Promotor COOR C/61905-61949,62050-62124,63557-63811 HITS AT1G01140.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01140.1 CDS ID=AT1G01140.1; Parent=AT1G01140; Name=AT1G01140.1; Note=CBL-interacting protein kinase 9; curator_summary=Encodes a CBL-interacting protein kinase with similarity to SOS2; conf_class=2; symbol=CIPK9; Alias=PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12; full_name=CBL-interacting protein kinase 9; computational_description=CBL-interacting protein kinase 9 (CIPK9)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: in 6 processes%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C NAF/FISL domain (InterPro:IPR018451)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C CBL-interacting protein kinase (InterPro:IPR020660)%2C NAF domain (InterPro:IPR004041)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1)%3B Has 130203 Blast hits to 128118 proteins in 4349 species: Archae - 165%3B Bacteria - 15262%3B Metazoa - 47961%3B Fungi - 13206%3B Plants - 31482%3B Viruses - 522%3B Other Eukaryotes - 21605 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11230129, PMID:12805596, PMID:12045290, PMID:14730064, PMID:15574398, PMID:15703057, PMID:16146321, PMID:16214899, PMID:16673935, PMID:17397506, PMID:17551672, PMID:18650403, PMID:18775970, PMID:17486125, PMID:20870959, PMID:21477822, PMID:23109687, PMID:25614064, PMID:25646412, locus:2035367; locus_type=protein_coding LOCN 300-UTR3 COOR C/64398-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512 HITS AT1G01140.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01140.2 CDS ID=AT1G01140.2; Parent=AT1G01140; Name=AT1G01140.2; Note=CBL-interacting protein kinase 9; curator_summary=Encodes a CBL-interacting protein kinase with similarity to SOS2; conf_class=3; symbol=CIPK9; Alias=PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12; full_name=CBL-interacting protein kinase 9; computational_description=CBL-interacting protein kinase 9 (CIPK9)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: in 6 processes%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C NAF/FISL domain (InterPro:IPR018451)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C CBL-interacting protein kinase (InterPro:IPR020660)%2C NAF domain (InterPro:IPR004041)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1)%3B Has 130203 Blast hits to 128118 proteins in 4349 species: Archae - 165%3B Bacteria - 15262%3B Metazoa - 47961%3B Fungi - 13206%3B Plants - 31482%3B Viruses - 522%3B Other Eukaryotes - 21605 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11230129, PMID:12805596, PMID:12045290, PMID:14730064, PMID:15574398, PMID:15703057, PMID:16146321, PMID:16214899, PMID:16673935, PMID:17397506, PMID:17551672, PMID:18650403, PMID:18775970, PMID:17486125, PMID:20870959, PMID:21477822, PMID:23109687, PMID:25614064, PMID:25646412, locus:2035367; locus_type=protein_coding LOCN 300-UTR3 COOR C/64398-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65733-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512 HITS AT1G01140.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01140.3 CDS ID=AT1G01140.3; Parent=AT1G01140; Name=AT1G01140.3; Note=CBL-interacting protein kinase 9; curator_summary=Encodes a CBL-interacting protein kinase with similarity to SOS2; conf_class=2; symbol=CIPK9; Alias=PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12; full_name=CBL-interacting protein kinase 9; computational_description=CBL-interacting protein kinase 9 (CIPK9)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: in 6 processes%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C NAF/FISL domain (InterPro:IPR018451)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C CBL-interacting protein kinase (InterPro:IPR020660)%2C NAF domain (InterPro:IPR004041)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1)%3B Has 130203 Blast hits to 128118 proteins in 4349 species: Archae - 165%3B Bacteria - 15262%3B Metazoa - 47961%3B Fungi - 13206%3B Plants - 31482%3B Viruses - 522%3B Other Eukaryotes - 21605 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11230129, PMID:12805596, PMID:12045290, PMID:14730064, PMID:15574398, PMID:15703057, PMID:16146321, PMID:16214899, PMID:16673935, PMID:17397506, PMID:17551672, PMID:18650403, PMID:18775970, PMID:17486125, PMID:20870959, PMID:21477822, PMID:23109687, PMID:25614064, PMID:25646412, locus:2035367; locus_type=protein_coding LOCN 300-UTR3 COOR C/64398-64475,64570-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512