CLON SALK_030814.29.99.f[seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC]  
TYPE SALK T-DNA
CHRO chr3
EVAL 2e-88
COOR W/19316980-19317144

HITS At3g52080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
       [Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern] 
       [YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap] 
       [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] 
TYPE Gene
TITL AT3G52080.1 CDS  gene_syn cation/hydrogen exchanger 28, chx28  gene chx28  function encodes a cation:proton exchanger expressed in pollen  go_component membrane|GO:0016020|17432890|IDA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  product chx28 (cation/hydrogen exchanger 28); monovalent cation:proton antiporter  note cation/hydrogen exchanger 28 (chx28); FUNCTIONS IN: monovalent cation:proton antiporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX15; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT2G13620.1); Has 1527 Blast hits to 1512 proteins in 472 species: Archae - 111; Bacteria - 966; Metazoa - 0; Fungi - 85; Plants - 231; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT3G52080.1p  transcript_id AT3G52080.1  protein_id AT3G52080.1p  transcript_id AT3G52080.1  
LOCN Exon
COOR W/19315090-19315260,19315335-19316339,19316433-19317038,19317112-19317735

CLON SALK_030814.49.40.x[seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC]  
TYPE SALK T-DNA
CHRO chr2
EVAL 1e-42
COOR C/7588135-7588254

HITS At2g17470[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
       [Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern] 
       [YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap] 
       [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] 
TYPE Gene
TITL AT2G17470.1 CDS  gene_syn F5J6.5  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25480.1); Has 583 Blast hits to 582 proteins in 205 species: Archae - 0; Bacteria - 346; Metazoa - 0; Fungi - 18; Plants - 199; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G17470.1p  transcript_id AT2G17470.1  protein_id AT2G17470.1p  transcript_id AT2G17470.1  
LOCN 300-UTR5
COOR C/7584572-7585240,7585521-7585667,7585750-7585886,7586251-7586520,7586607-7586744,7587753-7588008

CLON SALK_030814.56.00.x[seq] [About & Citation] [Vector] [analysis] [Order from ABRC] [Order from NASC]  
TYPE SALK T-DNA
CHRO chr3
EVAL 6e-89
COOR W/19316980-19317144

HITS At3g52080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
       [Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern] 
       [YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap] 
       [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] 
TYPE Gene
TITL AT3G52080.1 CDS  gene_syn cation/hydrogen exchanger 28, chx28  gene chx28  function encodes a cation:proton exchanger expressed in pollen  go_component membrane|GO:0016020|17432890|IDA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  product chx28 (cation/hydrogen exchanger 28); monovalent cation:proton antiporter  note cation/hydrogen exchanger 28 (chx28); FUNCTIONS IN: monovalent cation:proton antiporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX15; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT2G13620.1); Has 1527 Blast hits to 1512 proteins in 472 species: Archae - 111; Bacteria - 966; Metazoa - 0; Fungi - 85; Plants - 231; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT3G52080.1p  transcript_id AT3G52080.1  protein_id AT3G52080.1p  transcript_id AT3G52080.1  
LOCN Exon
COOR W/19315090-19315260,19315335-19316339,19316433-19317038,19317112-19317735