CLON R20742[SSP] [About & Citation] [NCBI] [Order] - click RAFL 
TYPE SSP cDNA
CHRO chr5
EVAL 96.98
COOR W/22405926-22406077,22406166-22406315,22406418-22406503,22406588-22406682,22406779-22406904,22406999-22407353
NOTE BT003943

HITS At5g55240[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
       [Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern] 
       [YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap] 
       [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] 
TYPE Gene
TITL AT5G55240.1 CDS  gene_syn MCO15.19, MCO15_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product caleosin-related family protein / embryo-specific protein, putative  note caleosin-related family protein / embryo-specific protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ATS1 (ARABIDOPSIS THALIANA SEED GENE 1); calcium ion binding (TAIR:AT4G26740.1); Has 228 Blast hits to 223 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 179; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G55240.1p  transcript_id AT5G55240.1  protein_id AT5G55240.1p  transcript_id AT5G55240.1  
LOCN Exon
COOR W/22405963-22406077,22406166-22406315,22406418-22406503,22406588-22406682,22406779-22406904,22406999-22407158
HITS At5g55250[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
       [Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern] 
       [YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap] 
       [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] 
TYPE Gene
TITL AT5G55250.2 CDS  gene_syn IAA CARBOXYLMETHYLTRANSFERASE 1, IAMT1, MCO15.20, MCO15_20  gene IAMT1  function Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.  go_component cellular_component|GO:0005575||ND  go_process polarity specification of adaxial/abaxial axis|GO:0009944|16169896|IMP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|11287667|IMP  go_function indole acetic acid carboxyl methyltransferase activity|GO:0051749|12897246|IDA  product IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1); S-adenosylmethionine-dependent methyltransferase/ indole acetic acid carboxyl methyltransferase  note IAA CARBOXYLMETHYLTRANSFERASE 1 (IAMT1); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, indole acetic acid carboxyl methyltransferase activity; INVOLVED IN: polarity specification of adaxial/abaxial axis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase (TAIR:AT5G56300.1); Has 628 Blast hits to 618 proteins in 99 species: Archae - 0; Bacteria - 52; Metazoa - 12; Fungi - 3; Plants - 445; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G55250.2p  transcript_id AT5G55250.2  protein_id AT5G55250.2p  transcript_id AT5G55250.2  
LOCN 300-UTR3
COOR C/22407589-22407942,22409326-22409601,22409875-22410291
HITS At5g55250[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
       [Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern] 
       [YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap] 
       [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] 
TYPE Gene
TITL AT5G55250.1 CDS  gene_syn IAA CARBOXYLMETHYLTRANSFERASE 1, IAMT1, MCO15.20, MCO15_20  gene IAMT1  function Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.  go_component cellular_component|GO:0005575||ND  go_process polarity specification of adaxial/abaxial axis|GO:0009944|16169896|IMP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|11287667|IMP  go_function indole acetic acid carboxyl methyltransferase activity|GO:0051749|12897246|IDA  product IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1); S-adenosylmethionine-dependent methyltransferase/ indole acetic acid carboxyl methyltransferase  note IAA CARBOXYLMETHYLTRANSFERASE 1 (IAMT1); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, indole acetic acid carboxyl methyltransferase activity; INVOLVED IN: polarity specification of adaxial/abaxial axis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase (TAIR:AT5G56300.1); Has 638 Blast hits to 626 proteins in 100 species: Archae - 0; Bacteria - 52; Metazoa - 12; Fungi - 3; Plants - 450; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT5G55250.1p  transcript_id AT5G55250.1  protein_id AT5G55250.1p  transcript_id AT5G55250.1  
LOCN 300-UTR3
COOR C/22407589-22407942,22409326-22409601,22409875-22410294,22410744-22410854