CLON R16393[SSP] [About & Citation] [NCBI] [Order] - click RAFL 
TYPE SSP cDNA
CHRO chr5
EVAL 99.97
COOR W/1221530-1221805,1221897-1222038,1222112-1222164,1222262-1222370,1222520-1222656,1222747-1222946,1223037-1223186,1223476-1223536,1223713-1223833,1224065-1224155,1224234-1224327,1224510-1224605,1224704-1224844,1225036-1225086,1225235-1225305,1225422-1225514,1225648-1225738,1226054-1226125,1226371-1226427,1226514-1226582,1226677-1226733,1226946-1227020,1227162-1227250,1227335-1227412,1227517-1227652,1227870-1227981,1228072-1228171,1228289-1228504
NOTE BT002411

HITS At5g04350[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
       [Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern] 
       [YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap] 
       [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] 
TYPE Gene
TITL AT5G04350.1 CDS  gene_syn T19N18.80, T19N18_80  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04347.1); Has 111 Blast hits to 110 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04350.1p  transcript_id AT5G04350.1  protein_id AT5G04350.1p  transcript_id AT5G04350.1  
LOCN 300-UTR3
COOR W/1220829-1221269
HITS At5g04360[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
       [Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern] 
       [YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap] 
       [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] 
TYPE Gene
TITL AT5G04360.1 CDS  gene_syn ATLDA, ATPU1, LIMIT DEXTRINASE, PU1, PULLULANASE, PULLULANASE 1, T19N18.90, T19N18_90  gene ATLDA  function Encodes an enzyme thought to be involved in the hydrolysis of the & 945;-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process starch catabolic process|GO:0005983|15862090|TAS  go_process starch catabolic process|GO:0005983|18815382|IMP  go_process starch biosynthetic process|GO:0019252|18815382|IMP  go_function alpha-amylase activity|GO:0004556||ISS  go_function limit dextrinase activity|GO:0010303|15849301|IDA  go_function pullulanase activity|GO:0051060|18815382|IDA  product ATLDA (LIMIT DEXTRINASE); alpha-amylase/ limit dextrinase/ pullulanase  note LIMIT DEXTRINASE (ATLDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase (TAIR:AT4G09020.1); Has 3780 Blast hits to 3779 proteins in 911 species: Archae - 39; Bacteria - 3120; Metazoa - 44; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).  protein_id AT5G04360.1p  transcript_id AT5G04360.1  protein_id AT5G04360.1p  transcript_id AT5G04360.1  
LOCN Exon
COOR W/1221566-1221805,1221897-1222038,1222112-1222164,1222262-1222370,1222520-1222656,1222747-1222946,1223037-1223186,1223476-1223536,1223713-1223833,1224065-1224155,1224234-1224327,1224510-1224605,1224704-1224844,1225036-1225086,1225235-1225305,1225422-1225514,1225648-1225738,1226054-1226125,1226371-1226427,1226514-1226582,1226677-1226733,1226946-1227020,1227162-1227250,1227335-1227412,1227517-1227655,1227872-1227981,1228072-1228171,1228289-1228399