CLON GABI_460E09[Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] [Order from ABRC] 
TYPE GABI-Kat FST
CHRO chrC
EVAL 2e-93
COOR C/19952-20140
NOTE - -

HITS ATCG00170.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL ATCG00170.1 CDS ID=ATCG00170.1; Parent=ATCG00170; Name=ATCG00170.1; index=1; Note=DNA-directed RNA polymerase family protein; curator_summary=RNA polymerase beta' subunit-2; conf_class=1; symbol=RPOC2; computational_description=RPOC2%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%3B INVOLVED IN: RNA elongation%3B LOCATED IN: chloroplast%2C nucleoid%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb1%2C domain 3 (InterPro:IPR007066)%2C RNA polymerase Rpb1%2C domain 5 (InterPro:IPR007081)%2C DNA-directed RNA polymerase%2C subunit beta%26apos%3B%26apos%3B (InterPro:IPR012756)%2C RNA polymerase Rpb1%2C domain 4 (InterPro:IPR007083)%3B BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase A1 (TAIR:AT3G57660.1).; conf_rating=*****; Dbxref=PMID:10574454, PMID:16507087, PMID:17726051, PMID:18650403, PMID:21949211, locus:504954641; locus_type=protein_coding LOCN 300-UTR5 COOR C/15938-20068 HITS ATCG00180.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL ATCG00180.1 CDS ID=ATCG00180.1; Parent=ATCG00180; Name=ATCG00180.1; index=1; Note=DNA-directed RNA polymerase family protein; curator_summary=RNA polymerase beta' subunit-1; conf_class=2; symbol=RPOC1; computational_description=RPOC1%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%3B INVOLVED IN: RNA elongation%3B LOCATED IN: chloroplast%2C nucleoid%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA polymerase%2C N-terminal (InterPro:IPR006592)%2C RNA polymerase%2C alpha subunit (InterPro:IPR000722)%2C RNA polymerase Rpb1%2C domain 3 (InterPro:IPR007066)%2C RNA polymerase Rpb1%2C domain 1 (InterPro:IPR007080)%3B BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1).; conf_rating=****; Dbxref=PMID:10574454, PMID:16698900, PMID:17071648, PMID:17726051, PMID:18650403, PMID:20653883, PMID:21288264, PMID:21949211, locus:504954642; locus_type=protein_coding LOCN 300-UTR3 COOR C/20251-21861,22653-23084 CLON GABI_460E09[Seq] [GABI-Kat] [SimpleSearch] [pAC106] [pAC161] [pGABI1] [pADIS1] [Order from GABI-Kat] [Order from NASC] [Order from ABRC] TYPE GABI-Kat FST CHRO chr1 EVAL e-104 COOR C/74566-74767 NOTE - - HITS AT1G01170.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01170.1 CDS ID=AT1G01170.1; Parent=AT1G01170; Name=AT1G01170.1; Note=ozone-responsive stress-like protein (DUF1138); conf_class=2; computational_description=Protein of unknown function (DUF1138)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to stress%3B LOCATED IN: mitochondrion%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1)%3B Has 86 Blast hits to 86 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, PMID:16055634, PMID:17059406, PMID:17432890, locus:2035247; locus_type=protein_coding LOCN 1000-Promotor COOR C/74105-74250,74338-74443 HITS AT1G01170.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01170.2 CDS ID=AT1G01170.2; Parent=AT1G01170; Name=AT1G01170.2; Note=ozone-responsive stress-like protein (DUF1138); conf_class=2; computational_description=Protein of unknown function (DUF1138)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to stress%3B LOCATED IN: mitochondrion%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1)%3B Has 86 Blast hits to 86 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, PMID:16055634, PMID:17059406, PMID:17432890, locus:2035247; locus_type=protein_coding LOCN 1000-Promotor COOR C/74105-74250,74338-74443 HITS AT1G04013.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G04013.1 antisense_lncRNA ID=AT1G04013.1; Parent=AT1G04013; Name=AT1G04013.1; description=Natural antisense transcript overlaps with AT1G01170; Note=Natural antisense transcript overlaps with AT1G01170; locus_type=antisense_long_noncoding_rna LOCN 300-UTR3 COOR W/74435-74683 HITS AT1G01180.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01180.1 CDS ID=AT1G01180.1; Parent=AT1G01180; Name=AT1G01180.1; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=1; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B FUNCTIONS IN: methyltransferase activity%3B INVOLVED IN: lipid biosynthetic process%3B EXPRESSED IN: sperm cell%2C hypocotyl%3B CONTAINS InterPro DOMAIN/s: Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase (InterPro:IPR007072)%3B Has 274 Blast hits to 274 proteins in 51 species: Archae - 0%3B Bacteria - 75%3B Metazoa - 2%3B Fungi - 0%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12101121, PMID:15703057, PMID:16520461, locus:2035262; locus_type=protein_coding LOCN 1000-Promotor COOR W/75633-76556