CODE AT4G25560.2 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene CHRO chr4 TITL AT4G25560.2 CDS ID=AT4G25560.2; Parent=AT4G25560; Name=AT4G25560.2; Note=myb domain protein 18; symbol=LAF1; Alias=AtMYB18, myb domain protein 18, MYB18, myb domain protein 18; full_name=LONG AFTER FAR-RED LIGHT 1; curator_summary=LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.; computational_description=myb domain protein 18 (MYB18)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1)%3B Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 744%3B Fungi - 438%3B Plants - 5747%3B Viruses - 4%3B Other Eukaryotes - 1783 (source: NCBI BLink).; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:11581165, PMID:15741320, PMID:15960622, PMID:16463103, PMID:12827204, PMID:17699755, PMID:19482971, PMID:23503597, locus:2131844; locus_type=protein_coding COOR W/13052840-13052898,13052979-13053573 HITS TCATCCGGGTGGAATAA [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN 1000-Promotor COOR C/13051909-13051925 NOTE 1, +0 1 0 0 0 HITS ASRP207489 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR W/13051911-13051933 HITS DR750478 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/13052555-13052680,13052768-13052898,13052979-13053513 NOTE DN604622 HITS PYAt4g25560 [Seq] [About Peking Yale TF] [Order from ABRC] (ORF amplified by RT-PCR and cloned into the Gateway( TM) system; 5' and 3' end sequencing has been performed on this clone.) TYPE PY TF EVAL 0.0 LOCN Exon COOR W/13052555-13052680,13052768-13052898,13052979-13053570 HITS AY519609 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN Exon COOR W/13052555-13052681,13052769-13052898,13052979-13053573 HITS DR750479 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13052768-13052898,13052979-13053575 HITS Z95744 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN Exon COOR W/13052798-13052898,13052979-13053012 HITS 245234_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR W/13053030-13053571 HITS GATCAACAACAGCAACT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/13053438-13053454 NOTE 0 0 0 19 0 0 0 0 0 37 0 0 0 0 0 0 0 HITS EG487616 [GenBank] TYPE ESTs EVAL 0.0 LOCN 300-UTR3 COOR W/13053688-13054216,13054525-13054716 NOTE BP605644 BP600200 AV788817 AV817698 BP600771 BP603784 BP578725 BP592689 BP594470 AV819134 BP621624 EL026518 AV819632 EL043380 BP603978 Z37601 BP611210 BP630302 BP668176 BP580820 BP583887 BP590108 BP603147 BP612827 BP620773 BP608851 BP665445 ES041238 ES040610 BP594353 HITS RAFL11-02-I02 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN 300-UTR3 COOR C/13053714-13054147 HITS R15108 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 100.00 LOCN 300-UTR3 COOR C/13053714-13054213,13054522-13054721,13054846-13054894,13055375-13055622 NOTE AY120730 HITS BE844714 [GenBank] TYPE ESTs EVAL 0.0 LOCN 300-UTR3 COOR W/13053730-13054216,13054525-13054723,13054848-13054894 NOTE DR372498 AV788799 AV788828 AV789876 AV819956 BP566246 BP568315 BP569045 BP571101 BP571951 BP580688 BP601665 BP606480 BP611349 BP668759 AV542217 ES127441 AV801316 EG527447 F19849 BP616042 BP621920 BP628582 BP628655 BP667546 BP671608 EL311131 EL210805 T04182 BP616589 EL050762 BP571487 BP572623 BP670597 BP629125 ES196462 ES132198 BX835859 AA728528 EH801546 ES130728 T04807 AA720180 EL264010 ES188503 EH882709 EL029655 EH979988 EL258669 EL234362 T46072 ES160140 EL176200 EL046703 HITS RAFL06-81-C06 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-179 LOCN 300-UTR3 COOR C/13053730-13054095 HITS BX826613 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN 300-UTR3 COOR C/13053730-13054216,13054525-13054723,13054848-13054894,13055375-13055603 HITS AB049628 [GenBank] TYPE Community cDNA EVAL 96.45 LOCN 300-UTR3 COOR C/13053730-13054213,13054522-13054721,13054846-13054894,13055375-13055442,13055445-13055597 HITS AY085603 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN 300-UTR3 COOR C/13053731-13053946,13053939-13054213,13054522-13054721,13054846-13054894,13055375-13055623 HITS RAFL09-27-K06 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN 300-UTR3 COOR C/13053732-13054132 HITS BX829349 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN 300-UTR3 COOR C/13053748-13054216,13054525-13054723,13054848-13054894,13055375-13055608 HITS BX835859 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN 300-UTR3 COOR W/13053754-13054263 HITS U15108 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP Gateway Clone EVAL 100.00 LOCN 300-UTR3 COOR C/13053782-13054213,13054522-13054721,13054846-13054894,13055375-13055518 NOTE U15108 BT002176 pENTR-TOPO