CLON AU236554[GenBank] 
TYPE ESTs
CHRO chr4
EVAL e-144
COOR W/13048377-13048637,13049147-13049191,13049849-13049943,13050035-13050107,13050437-13050525,13050609-13050642
NOTE BP857292 BP832195 DR285107 BP563032 DR285108 BP809943 BP858876 DR285106 BP840356 EL281985 BP865693 BP865694 AV554529 ES171327 DR285109 EH866400 EL127922 BP569597 ES058043 BP573357 EL213178 BP577016 ES176364 EH887655 ES056518 EH955713 ES142548 EL073330 EL108185 EL315755 

HITS AT4G25540.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25540.1 CDS ID=AT4G25540.1; Parent=AT4G25540; Name=AT4G25540.1; Note=homolog of DNA mismatch repair protein MSH3; curator_summary=encodes a DNA mismatch repair homolog of human MutS gene%2C MSH6. There are four MutS genes in Arabidopsis%2C MSH2%2C MSH3%2C MSH6%2C and MSH7%2C which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; conf_class=1; symbol=MSH3; Alias=ATMSH3; full_name=homolog of DNA mismatch repair protein MSH3; computational_description=homolog of DNA mismatch repair protein MSH3 (MSH3)%3B CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS%2C clamp (InterPro:IPR007861)%2C DNA mismatch repair protein MutS%2C connector (InterPro:IPR007860)%2C DNA mismatch repair protein MutS%2C N-terminal (InterPro:IPR016151)%2C DNA mismatch repair protein MutS%2C core (InterPro:IPR007696)%2C DNA mismatch repair protein MutS%2C C-terminal (InterPro:IPR000432)%2C DNA mismatch repair protein MutS-like%2C N-terminal (InterPro:IPR007695)%3B BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2)%3B Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153%3B Bacteria - 9793%3B Metazoa - 705%3B Fungi - 864%3B Plants - 451%3B Viruses - 3%3B Other Eukaryotes - 2578 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10852942, PMID:10517319, PMID:11130711, PMID:14576160, PMID:15053760, PMID:16126853, PMID:17014743, PMID:18775970, PMID:24652625, locus:2131829; locus_type=protein_coding LOCN 300-UTR5 COOR C/13042700-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044342,13044680-13044811,13044972-13045226,13045722-13045973,13046216-13046314,13046403-13046567,13046731-13046922,13047180-13048115 HITS AT4G25550.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25550.1 CDS ID=AT4G25550.1; Parent=AT4G25550; Name=AT4G25550.1; Note=Cleavage/polyadenylation specificity factor%2C 25kDa subunit; conf_class=1; computational_description=Cleavage/polyadenylation specificity factor%2C 25kDa subunit%3B CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor%2C 25kDa subunit (InterPro:IPR016706)%3B BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1)%3B Has 397 Blast hits to 397 proteins in 170 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 171%3B Fungi - 88%3B Plants - 70%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16282318, PMID:18479511, locus:2131839; locus_type=protein_coding LOCN Exon COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050873