CLON AF178688[GenBank] 
TYPE Community DNA
CHRO chr4
EVAL 27.39
COOR W/13041034-13041078,13041075-13042518

HITS AT4G25530.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25530.1 CDS ID=AT4G25530.1; Parent=AT4G25530; Name=AT4G25530.1; Note=FLOWERING WAGENINGEN; curator_summary=Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.; conf_class=1; symbol=FWA; Alias=HDG6, HOMEODOMAIN GLABROUS 6; full_name=FLOWERING WAGENINGEN; computational_description=FLOWERING WAGENINGEN (FWA)%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 7 (TAIR:AT5G52170.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10852935, PMID:10652130, PMID:10518493, PMID:10501030, PMID:9615462, PMID:9450349, PMID:9401118, PMID:8628249, PMID:1896021, PMID:11118137, PMID:12121623, PMID:12232170, PMID:12520338, PMID:12663548, PMID:11382816, PMID:12941876, PMID:12941870, PMID:14526112, PMID:14631047, PMID:15117265, PMID:15269773, PMID:15242620, PMID:11090618, PMID:16120596, PMID:16489130, PMID:16527743, PMID:16648367, PMID:16778018, PMID:17105345, PMID:17189287, PMID:17144899, PMID:17964287, PMID:17921315, PMID:18282134, PMID:18643997, PMID:18700816, PMID:18389059, PMID:20333248, PMID:20226671, PMID:20736450, PMID:21150311, PMID:21307831, PMID:21518889, PMID:21457364, PMID:21889057, PMID:22519754, PMID:22555436, PMID:22995285, PMID:23734982, PMID:23836195, PMID:24808013, PMID:24990959, PMID:25197096, PMID:25569774, PMID:25561534, locus:2131814; locus_type=protein_coding LOCN Exon COOR W/13039312-13039481,13039603-13039720,13039917-13040501,13040589-13040690,13040785-13040988,13041160-13041331,13041445-13041812,13041901-13042242 HITS AT4G25540.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25540.1 CDS ID=AT4G25540.1; Parent=AT4G25540; Name=AT4G25540.1; Note=homolog of DNA mismatch repair protein MSH3; curator_summary=encodes a DNA mismatch repair homolog of human MutS gene%2C MSH6. There are four MutS genes in Arabidopsis%2C MSH2%2C MSH3%2C MSH6%2C and MSH7%2C which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; conf_class=1; symbol=MSH3; Alias=ATMSH3; full_name=homolog of DNA mismatch repair protein MSH3; computational_description=homolog of DNA mismatch repair protein MSH3 (MSH3)%3B CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS%2C clamp (InterPro:IPR007861)%2C DNA mismatch repair protein MutS%2C connector (InterPro:IPR007860)%2C DNA mismatch repair protein MutS%2C N-terminal (InterPro:IPR016151)%2C DNA mismatch repair protein MutS%2C core (InterPro:IPR007696)%2C DNA mismatch repair protein MutS%2C C-terminal (InterPro:IPR000432)%2C DNA mismatch repair protein MutS-like%2C N-terminal (InterPro:IPR007695)%3B BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2)%3B Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153%3B Bacteria - 9793%3B Metazoa - 705%3B Fungi - 864%3B Plants - 451%3B Viruses - 3%3B Other Eukaryotes - 2578 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10852942, PMID:10517319, PMID:11130711, PMID:14576160, PMID:15053760, PMID:16126853, PMID:17014743, PMID:18775970, PMID:24652625, locus:2131829; locus_type=protein_coding LOCN 300-UTR3 COOR C/13042700-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044342,13044680-13044811,13044972-13045226,13045722-13045973,13046216-13046314,13046403-13046567,13046731-13046922,13047180-13048115