CLON AB049628[GenBank] 
TYPE Community cDNA
CHRO chr4
EVAL 96.45
COOR C/13053730-13054213,13054522-13054721,13054846-13054894,13055375-13055442,13055445-13055597

HITS AT4G25560.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25560.1 CDS ID=AT4G25560.1; Parent=AT4G25560; Name=AT4G25560.1; Note=myb domain protein 18; curator_summary=LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.; conf_class=2; symbol=LAF1; Alias=AtMYB18, myb domain protein 18, MYB18, myb domain protein 18; full_name=LONG AFTER FAR-RED LIGHT 1; computational_description=myb domain protein 18 (MYB18)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1)%3B Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 744%3B Fungi - 438%3B Plants - 5747%3B Viruses - 4%3B Other Eukaryotes - 1783 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:11581165, PMID:15741320, PMID:15960622, PMID:16463103, PMID:12827204, PMID:17699755, PMID:19482971, PMID:23503597, locus:2131844; locus_type=protein_coding LOCN 300-UTR3 COOR W/13052555-13052681,13052769-13052898,13052979-13053573 HITS AT4G25560.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25560.2 CDS ID=AT4G25560.2; Parent=AT4G25560; Name=AT4G25560.2; Note=myb domain protein 18; symbol=LAF1; Alias=AtMYB18, myb domain protein 18, MYB18, myb domain protein 18; full_name=LONG AFTER FAR-RED LIGHT 1; curator_summary=LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.; computational_description=myb domain protein 18 (MYB18)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1)%3B Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 744%3B Fungi - 438%3B Plants - 5747%3B Viruses - 4%3B Other Eukaryotes - 1783 (source: NCBI BLink).; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:11581165, PMID:15741320, PMID:15960622, PMID:16463103, PMID:12827204, PMID:17699755, PMID:19482971, PMID:23503597, locus:2131844; locus_type=protein_coding LOCN 300-UTR3 COOR W/13052840-13052898,13052979-13053573 HITS AT4G25570.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25570.1 CDS ID=AT4G25570.1; Parent=AT4G25570; Name=AT4G25570.1; Note=Cytochrome b561/ferric reductase transmembrane protein family; curator_summary=Encodes cytochrome b561.; conf_class=2; symbol=ACYB-2; computational_description=ACYB-2%3B FUNCTIONS IN: carbon-monoxide oxygenase activity%3B LOCATED IN: integral to membrane%2C chloroplast%2C vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome b561%2C eukaryote (InterPro:IPR004877)%2C Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593)%3B BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14730083, PMID:15032866, PMID:15215502, PMID:16581873, PMID:18650403, PMID:20736450, locus:2131859; locus_type=protein_coding LOCN Exon COOR C/13053887-13054213,13054522-13054721,13054846-13054894,13055375-13055518 HITS AT4G25570.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25570.2 CDS ID=AT4G25570.2; Parent=AT4G25570; Name=AT4G25570.2; Note=Cytochrome b561/ferric reductase transmembrane protein family; symbol=ACYB-2; curator_summary=Encodes cytochrome b561.; computational_description=ACYB-2%3B FUNCTIONS IN: carbon-monoxide oxygenase activity%3B LOCATED IN: integral to membrane%2C chloroplast%2C vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome b561%2C eukaryote (InterPro:IPR004877)%2C Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593)%3B BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:14730083, PMID:15032866, PMID:15215502, PMID:16581873, PMID:18650403, PMID:20736450, locus:2131859; locus_type=protein_coding LOCN Exon COOR C/13053887-13054213,13054522-13054721,13054846-13054894,13055375-13055641 HITS AT4G25580.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25580.1 CDS ID=AT4G25580.1; Parent=AT4G25580; Name=AT4G25580.1; Note=CAP160 protein; conf_class=2; computational_description=CAP160 protein%3B CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418)%3B BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1)%3B Has 292 Blast hits to 249 proteins in 85 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 66%3B Fungi - 33%3B Plants - 116%3B Viruses - 9%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12753585, PMID:12857845, PMID:14973164, PMID:16284313, PMID:17227549, PMID:17346263, locus:2131869; locus_type=protein_coding LOCN 1000-Promotor COOR W/13056320-13056395,13056514-13056717,13056797-13057189,13057293-13057460,13057535-13058479,13058563-13058657 HITS AT4G25580.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25580.2 CDS ID=AT4G25580.2; Parent=AT4G25580; Name=AT4G25580.2; Note=CAP160 protein; computational_description=CAP160 protein%3B CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418)%3B BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1)%3B Has 292 Blast hits to 249 proteins in 85 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 66%3B Fungi - 33%3B Plants - 116%3B Viruses - 9%3B Other Eukaryotes - 42 (source: NCBI BLink).; Dbxref=PMID:12753585, PMID:12857845, PMID:14973164, PMID:16284313, PMID:17227549, PMID:17346263, locus:2131869; locus_type=protein_coding LOCN 1000-Promotor COOR W/13056320-13056395,13056514-13056717,13056797-13057189,13057293-13057460,13057535-13058523