CLON JAtY68O03[About JAtY] 
TYPE JAtY TAC
CHRO chr4
EVAL 0.0
COOR W/12963825-13058205

HITS AT4G25350.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25350.1 CDS ID=AT4G25350.1; Parent=AT4G25350; Name=AT4G25350.1; Note=EXS (ERD1/XPR1/SYG1) family protein; curator_summary=SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development.; conf_class=1; symbol=SHB1; full_name=SHORT HYPOCOTYL UNDER BLUE1; computational_description=SHORT HYPOCOTYL UNDER BLUE1 (SHB1)%3B CONTAINS InterPro DOMAIN/s: EXS%2C C-terminal (InterPro:IPR004342)%2C SPX%2C N-terminal (InterPro:IPR004331)%3B BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G35350.1)%3B Has 1169 Blast hits to 1111 proteins in 205 species: Archae - 2%3B Bacteria - 6%3B Metazoa - 265%3B Fungi - 425%3B Plants - 309%3B Viruses - 0%3B Other Eukaryotes - 162 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15122012, PMID:16500988, PMID:19141706, PMID:19406114, PMID:20354198, PMID:22995285, PMID:23505389, PMID:23771896, PMID:24619610, locus:2138038; locus_type=protein_coding LOCN Exon COOR C/12963382-12963484,12963562-12963698,12963789-12964220,12964301-12964345,12964425-12964529,12964621-12964879,12964964-12965084,12965175-12965304,12965375-12965446,12965525-12965811,12965902-12966448 HITS AT4TE60680[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60680 transposable_element ID=AT4TE60680; Name=AT4TE60680; Alias=ATREP1 LOCN Exon COOR C/12967438-12967566 HITS AT4TE60685[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60685 transposable_element ID=AT4TE60685; Name=AT4TE60685; Alias=ATREP2A LOCN Exon COOR C/12967567-12968349 HITS AT4TE60690[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60690 transposable_element ID=AT4TE60690; Name=AT4TE60690; Alias=ATREP2A LOCN Exon COOR C/12968350-12968437 HITS AT4TE60695[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60695 transposable_element ID=AT4TE60695; Name=AT4TE60695; Alias=ATREP14 LOCN Exon COOR C/12968444-12968464 HITS AT4TE60700[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60700 transposable_element ID=AT4TE60700; Name=AT4TE60700; Alias=ATREP11 LOCN Exon COOR C/12968465-12968872 HITS AT4G25360.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25360.1 CDS ID=AT4G25360.1; Parent=AT4G25360; Name=AT4G25360.1; Note=TRICHOME BIREFRINGENCE-LIKE 18; curator_summary=Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).; conf_class=2; symbol=TBL18; full_name=TRICHOME BIREFRINGENCE-LIKE 18; computational_description=TRICHOME BIREFRINGENCE-LIKE 18 (TBL18)%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231%2C plant (InterPro:IPR004253)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G51640.1)%3B Has 1342 Blast hits to 1320 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1339%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17316173, PMID:20388664, PMID:20657172, locus:2138043; locus_type=protein_coding LOCN Exon COOR W/12970187-12970706,12971214-12971488,12971598-12972404 HITS AT4G25360.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25360.2 CDS ID=AT4G25360.2; Parent=AT4G25360; Name=AT4G25360.2; Note=TRICHOME BIREFRINGENCE-LIKE 18; curator_summary=Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).; conf_class=2; symbol=TBL18; full_name=TRICHOME BIREFRINGENCE-LIKE 18; computational_description=TRICHOME BIREFRINGENCE-LIKE 18 (TBL18)%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231%2C plant (InterPro:IPR004253)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G51640.1)%3B Has 1342 Blast hits to 1320 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1339%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17316173, PMID:20388664, PMID:20657172, locus:2138043; locus_type=protein_coding LOCN Exon COOR W/12970187-12970706,12971214-12971488,12971598-12972404 HITS AT4G25370.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25370.1 CDS ID=AT4G25370.1; Parent=AT4G25370; Name=AT4G25370.1; Note=Double Clp-N motif protein; conf_class=2; computational_description=Double Clp-N motif protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein metabolic process%3B LOCATED IN: thylakoid%2C plastid stroma%2C chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Clp%2C N-terminal (InterPro:IPR004176)%3B BEST Arabidopsis thaliana protein match is: Double Clp-N motif protein (TAIR:AT4G12060.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12185496, PMID:11826309, PMID:14576160, PMID:14593120, PMID:16766689, PMID:16980539, PMID:17181860, locus:2138048; locus_type=protein_coding LOCN Exon COOR W/12972747-12972964,12973068-12973103,12973197-12973306,12974056-12974235,12974329-12974456,12974536-12974580 HITS AT4G25380.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25380.1 CDS ID=AT4G25380.1; Parent=AT4G25380; Name=AT4G25380.1; Note=stress-associated protein 10; conf_class=1; symbol=SAP10; Alias=AtSAP10, Arabidopsis thaliana stress-associated protein 10; full_name=stress-associated protein 10; computational_description=stress-associated protein 10 (SAP10)%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C AN1-type (InterPro:IPR000058)%2C Zinc finger%2C A20-type (InterPro:IPR002653)%3B BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G22820.2)%3B Has 1084 Blast hits to 1007 proteins in 145 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 503%3B Fungi - 9%3B Plants - 445%3B Viruses - 6%3B Other Eukaryotes - 119 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16510518, PMID:17033811, PMID:19825620, PMID:21443605, PMID:21695274, locus:2138053; locus_type=protein_coding LOCN Exon COOR C/12975936-12976328 HITS AT4G25390.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25390.1 CDS ID=AT4G25390.1; Parent=AT4G25390; Name=AT4G25390.1; Note=Protein kinase superfamily protein; conf_class=1; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G51770.1)%3B Has 91751 Blast hits to 74768 proteins in 2369 species: Archae - 62%3B Bacteria - 7643%3B Metazoa - 25610%3B Fungi - 5037%3B Plants - 44627%3B Viruses - 173%3B Other Eukaryotes - 8599 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12481097, PMID:12805585, PMID:14576160, PMID:15047898, PMID:16258017, PMID:18775970, PMID:21477822, locus:2138014; locus_type=protein_coding LOCN Exon COOR W/12977491-12979446 HITS AT4G25390.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25390.2 CDS ID=AT4G25390.2; Parent=AT4G25390; Name=AT4G25390.2; Note=Protein kinase superfamily protein; conf_class=3; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G51770.1)%3B Has 91751 Blast hits to 74768 proteins in 2369 species: Archae - 62%3B Bacteria - 7643%3B Metazoa - 25610%3B Fungi - 5037%3B Plants - 44627%3B Viruses - 173%3B Other Eukaryotes - 8599 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:12805585, PMID:14576160, PMID:15047898, PMID:16258017, PMID:18775970, PMID:21477822, locus:2138014; locus_type=protein_coding LOCN Exon COOR W/12977491-12978883,12979346-12979446 HITS AT4G25400.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25400.1 CDS ID=AT4G25400.1; Parent=AT4G25400; Name=AT4G25400.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G51780.1)%3B Has 180 Blast hits to 180 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 180%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, locus:2138019; locus_type=protein_coding LOCN Exon COOR W/12981226-12981396,12981588-12981914,12982273-12982335 HITS AT4G25400.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25400.2 CDS ID=AT4G25400.2; Parent=AT4G25400; Name=AT4G25400.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G51780.1)%3B Has 180 Blast hits to 180 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 180%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, locus:2138019; locus_type=protein_coding LOCN Exon COOR W/12981226-12981396,12981588-12981980 HITS AT4G07375.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07375.1 lnc_RNA ID=AT4G07375.1; Parent=AT4G07375; Name=AT4G07375.1; locus_type=long_noncoding_rna LOCN Exon COOR C/12984768-12985030 HITS AT4G25410.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25410.1 CDS ID=AT4G25410.1; Parent=AT4G25410; Name=AT4G25410.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=1; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G51790.1)%3B Has 313 Blast hits to 313 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 8%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:17061125, locus:2138024; locus_type=protein_coding LOCN Exon COOR W/12985772-12985996,12986159-12986518,12986603-12986683 HITS AT4G25420.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25420.1 CDS ID=AT4G25420.1; Parent=AT4G25420; Name=AT4G25420.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light.; conf_class=2; symbol=GA20OX1; computational_description=GA20OX1%3B CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: gibberellin 20 oxidase 2 (TAIR:AT5G51810.1)%3B Has 8544 Blast hits to 8501 proteins in 990 species: Archae - 0%3B Bacteria - 1084%3B Metazoa - 124%3B Fungi - 981%3B Plants - 4942%3B Viruses - 0%3B Other Eukaryotes - 1413 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10517835, PMID:10330476, PMID:9390435, PMID:9276956, PMID:7604047, PMID:7630935, PMID:7727751, PMID:2236013, PMID:11598220, PMID:11309141, PMID:12232414, PMID:12232124, PMID:12231829, PMID:15634200, PMID:11120474, PMID:15923331, PMID:16045477, PMID:16815952, PMID:17387478, PMID:17461792, PMID:17521606, PMID:17991462, PMID:18069939, PMID:18440929, PMID:19228336, PMID:17644628, PMID:19564609, PMID:20008096, PMID:20460583, PMID:20668225, PMID:21567727, PMID:20872270, PMID:20070875, PMID:21056641, PMID:21217124, PMID:21205622, PMID:21564544, PMID:21886836, PMID:22238061, PMID:24374505, PMID:24023067, PMID:25382585, PMID:25616734, locus:2005511; locus_type=protein_coding LOCN Exon COOR C/12990982-12991242,12991346-12991667,12991859-12992409 HITS AT4G25420.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25420.2 CDS ID=AT4G25420.2; Parent=AT4G25420; Name=AT4G25420.2; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; symbol=GA20OX1; curator_summary=Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light.; computational_description=GA20OX1%3B CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: gibberellin 20 oxidase 2 (TAIR:AT5G51810.1)%3B Has 8544 Blast hits to 8501 proteins in 990 species: Archae - 0%3B Bacteria - 1084%3B Metazoa - 124%3B Fungi - 981%3B Plants - 4942%3B Viruses - 0%3B Other Eukaryotes - 1413 (source: NCBI BLink).; Dbxref=PMID:10517835, PMID:10330476, PMID:9390435, PMID:9276956, PMID:7604047, PMID:7630935, PMID:7727751, PMID:2236013, PMID:11598220, PMID:11309141, PMID:12232414, PMID:12232124, PMID:12231829, PMID:15634200, PMID:11120474, PMID:15923331, PMID:16045477, PMID:16815952, PMID:17387478, PMID:17461792, PMID:17521606, PMID:17991462, PMID:18069939, PMID:18440929, PMID:19228336, PMID:17644628, PMID:19564609, PMID:20008096, PMID:20460583, PMID:20668225, PMID:21567727, PMID:20872270, PMID:20070875, PMID:21056641, PMID:21217124, PMID:21205622, PMID:21564544, PMID:21886836, PMID:22238061, PMID:24374505, PMID:24023067, PMID:25382585, PMID:25616734, locus:2005511; locus_type=protein_coding LOCN Exon COOR C/12991325-12991667,12991859-12992409 HITS AT4TE60830[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60830 transposable_element ID=AT4TE60830; Name=AT4TE60830; Alias=HELITRONY3 LOCN Exon COOR C/12992938-12993516 HITS AT4TE60835[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60835 transposable_element ID=AT4TE60835; Name=AT4TE60835; Alias=ATREP10D LOCN Exon COOR C/12993517-12993571 HITS AT4TE60850[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60850 transposable_element ID=AT4TE60850; Name=AT4TE60850; Alias=ATTIRX1D LOCN Exon COOR C/12997395-12997553 HITS AT4G25430.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25430.1 CDS ID=AT4G25430.1; Parent=AT4G25430; Name=AT4G25430.1; Note=hypothetical protein; conf_class=5; symbol=TRM23; full_name=TON1 Recruiting Motif 23; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16244146, PMID:22286137, locus:2131794; locus_type=protein_coding LOCN Exon COOR W/12998571-12998757,12998850-12998941,12999018-12999800,12999894-13000211 HITS AT4G25433.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25433.1 CDS ID=AT4G25433.1; Parent=AT4G25433; Name=AT4G25433.1; Note=peptidoglycan-binding LysM domain-containing protein; conf_class=4; computational_description=peptidoglycan-binding LysM domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: cell wall macromolecule catabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392)%3B BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G62150.1)%3B Has 63 Blast hits to 63 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 63%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:504955292; locus_type=protein_coding LOCN Exon COOR C/13001463-13001795 HITS AT4G25434.10[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.10 CDS ID=AT4G25434.10; Parent=AT4G25434; Name=AT4G25434.10; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004566,13004648-13004698,13004793-13004870,13005007-13005144,13005441-13005506,13005601-13005771 HITS AT4G25434.13[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.13 CDS ID=AT4G25434.13; Parent=AT4G25434; Name=AT4G25434.13; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004698,13004793-13004870,13005007-13005105 HITS AT4G25434.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.1 CDS ID=AT4G25434.1; Parent=AT4G25434; Name=AT4G25434.1; Note=nudix hydrolase homolog 10; conf_class=1; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004566,13004648-13004698,13004793-13004855,13005007-13005144,13005441-13005506,13005601-13005771 HITS AT4G25434.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.2 CDS ID=AT4G25434.2; Parent=AT4G25434; Name=AT4G25434.2; Note=nudix hydrolase homolog 10; conf_class=3; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004698,13004793-13004855,13005007-13005144,13005441-13005506,13005601-13005771 HITS AT4G25434.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.3 CDS ID=AT4G25434.3; Parent=AT4G25434; Name=AT4G25434.3; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004566,13004648-13004698,13004793-13004870,13005007-13005246 HITS AT4G25434.4[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.4 CDS ID=AT4G25434.4; Parent=AT4G25434; Name=AT4G25434.4; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004566,13004648-13004698,13004793-13004855,13005007-13005246 HITS AT4G25434.5[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.5 CDS ID=AT4G25434.5; Parent=AT4G25434; Name=AT4G25434.5; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004566,13004648-13004698,13004793-13004870,13005007-13005246 HITS AT4G25434.8[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.8 CDS ID=AT4G25434.8; Parent=AT4G25434; Name=AT4G25434.8; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004698,13004793-13004870,13005007-13005144,13005441-13005506,13005601-13005771 HITS AT4G25434.6[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.6 CDS ID=AT4G25434.6; Parent=AT4G25434; Name=AT4G25434.6; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004322-13004439,13004532-13004698,13004793-13004870,13005007-13005144,13005441-13005506,13005601-13005771 HITS AT4G25434.7[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.7 CDS ID=AT4G25434.7; Parent=AT4G25434; Name=AT4G25434.7; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004322-13004439,13004532-13004566,13004648-13004698,13004793-13004870,13005007-13005144,13005441-13005506,13005601-13005771 HITS AT4G25434.9[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.9 CDS ID=AT4G25434.9; Parent=AT4G25434; Name=AT4G25434.9; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004322-13004439,13004532-13004566,13004648-13004698,13004793-13004855,13005007-13005144,13005441-13005506,13005601-13005771 HITS AT4G25434.11[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.11 CDS ID=AT4G25434.11; Parent=AT4G25434; Name=AT4G25434.11; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004384-13004698,13004793-13004870,13005007-13005144,13005441-13005506,13005601-13005771 HITS AT4G25434.12[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25434.12 CDS ID=AT4G25434.12; Parent=AT4G25434; Name=AT4G25434.12; Note=nudix hydrolase homolog 10; symbol=NUDT10; Alias=ATNUDT10, nudix hydrolase homolog 10; full_name=nudix hydrolase homolog 10; computational_description=nudix hydrolase homolog 10 (NUDT10)%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase (InterPro:IPR020476)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C Nudix hydrolase 6-like (InterPro:IPR003293)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1)%3B Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36%3B Bacteria - 1096%3B Metazoa - 164%3B Fungi - 9%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; Dbxref=PMID:15878881, PMID:16244146, locus:1005716200; locus_type=protein_coding LOCN Exon COOR C/13004384-13004566,13004648-13004698,13004793-13004870,13005007-13005144,13005441-13005506,13005601-13005771 HITS AT4G25435.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25435.1 tRNA ID=AT4G25435.1; Parent=AT4G25435; Note=tRNA-Lys; computational_description=tRNA-Lys (anticodon: CTT); Dbxref=PMID:8980477, PMID:16244146, PMID:23066098, PMID:8980477, PMID:16244146, locus:1005716199; Name=AT4G25435.1; locus_type=pre_trna LOCN Exon COOR C/13006234-13006306 HITS AT4TE60900[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60900 transposable_element ID=AT4TE60900; Name=AT4TE60900; Alias=ATLINEIII LOCN Exon COOR C/13006255-13006308 HITS AT4G25440.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25440.1 CDS ID=AT4G25440.1; Parent=AT4G25440; Name=AT4G25440.1; Note=zinc finger WD40 repeat protein 1; conf_class=2; symbol=ZFWD1; full_name=zinc finger WD40 repeat protein 1; computational_description=zinc finger WD40 repeat protein 1 (ZFWD1)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: xylem%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G51980.1)%3B Has 28356 Blast hits to 16036 proteins in 564 species: Archae - 44%3B Bacteria - 4332%3B Metazoa - 10522%3B Fungi - 6455%3B Plants - 3358%3B Viruses - 0%3B Other Eukaryotes - 3645 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11137290, PMID:15923329, PMID:16244146, PMID:16500995, PMID:18221561, locus:2131799; locus_type=protein_coding LOCN Exon COOR C/13007107-13007251,13007334-13007431,13007522-13007581,13007669-13007788,13007908-13008054,13008254-13008355,13008491-13008580,13008751-13008846,13008947-13009381 HITS AT4G25440.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25440.2 CDS ID=AT4G25440.2; Parent=AT4G25440; Name=AT4G25440.2; Note=zinc finger WD40 repeat protein 1; symbol=ZFWD1; full_name=zinc finger WD40 repeat protein 1; Dbxref=PMID:11137290, PMID:15923329, PMID:16244146, PMID:16500995, PMID:18221561, locus:2131799; computational_description=zinc finger WD40 repeat protein 1 (ZFWD1)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: xylem%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G51980.1)%3B Has 28356 Blast hits to 16036 proteins in 564 species: Archae - 44%3B Bacteria - 4332%3B Metazoa - 10522%3B Fungi - 6455%3B Plants - 3358%3B Viruses - 0%3B Other Eukaryotes - 3645 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR C/13007107-13007251,13007334-13007431,13007522-13007581,13007669-13007788,13007908-13008054,13008254-13008355,13008491-13008580,13008751-13008846,13008947-13009381 HITS AT4G25440.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25440.3 CDS ID=AT4G25440.3; Parent=AT4G25440; Name=AT4G25440.3; Note=zinc finger WD40 repeat protein 1; symbol=ZFWD1; full_name=zinc finger WD40 repeat protein 1; Dbxref=PMID:11137290, PMID:15923329, PMID:16244146, PMID:16500995, PMID:18221561, locus:2131799; computational_description=zinc finger WD40 repeat protein 1 (ZFWD1)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: xylem%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G51980.1)%3B Has 28356 Blast hits to 16036 proteins in 564 species: Archae - 44%3B Bacteria - 4332%3B Metazoa - 10522%3B Fungi - 6455%3B Plants - 3358%3B Viruses - 0%3B Other Eukaryotes - 3645 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR C/13007107-13007251,13007334-13007431,13007522-13007581,13007669-13007788,13007908-13008054,13008254-13008355,13008491-13008580,13008751-13008846,13008947-13009381 HITS AT4G25450.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25450.1 CDS ID=AT4G25450.1; Parent=AT4G25450; Name=AT4G25450.1; Note=non-intrinsic ABC protein 8; curator_summary=member of NAP subfamily; conf_class=2; symbol=ABCB28; Alias=ATNAP8, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, NAP8, non-intrinsic ABC protein 8; full_name=ATP-binding cassette B28; computational_description=non-intrinsic ABC protein 8 (NAP8)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1)%3B Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380%3B Bacteria - 322963%3B Metazoa - 9904%3B Fungi - 7465%3B Plants - 5560%3B Viruses - 14%3B Other Eukaryotes - 63700 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:11855639, PMID:12766230, PMID:15381434, PMID:16244146, PMID:16282320, PMID:17164256, PMID:17432890, PMID:17899397, PMID:18299247, locus:2131809; locus_type=protein_coding LOCN Exon COOR C/13009845-13010081,13010231-13010287,13010373-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013345,13013522-13013912 HITS AT4G25450.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25450.3 CDS ID=AT4G25450.3; Parent=AT4G25450; Name=AT4G25450.3; Note=non-intrinsic ABC protein 8; curator_summary=member of NAP subfamily; conf_class=2; symbol=ABCB28; Alias=ATNAP8, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, NAP8, non-intrinsic ABC protein 8; full_name=ATP-binding cassette B28; computational_description=non-intrinsic ABC protein 8 (NAP8)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1)%3B Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380%3B Bacteria - 322963%3B Metazoa - 9904%3B Fungi - 7465%3B Plants - 5560%3B Viruses - 14%3B Other Eukaryotes - 63700 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:11855639, PMID:12766230, PMID:15381434, PMID:16244146, PMID:16282320, PMID:17164256, PMID:17432890, PMID:17899397, PMID:18299247, locus:2131809; locus_type=protein_coding LOCN Exon COOR C/13009845-13010081,13010231-13010287,13010373-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013229 HITS AT4G25450.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25450.2 CDS ID=AT4G25450.2; Parent=AT4G25450; Name=AT4G25450.2; Note=non-intrinsic ABC protein 8; curator_summary=member of NAP subfamily; conf_class=2; symbol=ABCB28; Alias=ATNAP8, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, NAP8, non-intrinsic ABC protein 8; full_name=ATP-binding cassette B28; computational_description=non-intrinsic ABC protein 8 (NAP8)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1)%3B Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380%3B Bacteria - 322963%3B Metazoa - 9904%3B Fungi - 7465%3B Plants - 5560%3B Viruses - 14%3B Other Eukaryotes - 63700 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:11855639, PMID:12766230, PMID:15381434, PMID:16244146, PMID:16282320, PMID:17164256, PMID:17432890, PMID:17899397, PMID:18299247, locus:2131809; locus_type=protein_coding LOCN Exon COOR C/13010367-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013345,13013522-13013912 HITS AT4G25470.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25470.1 CDS ID=AT4G25470.1; Parent=AT4G25470; Name=AT4G25470.1; Note=C-repeat/DRE binding factor 2; curator_summary=Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to low temperature%2C abscisic acid%2C and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes%2C which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3%2C suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.; conf_class=1; symbol=CBF2; Alias=ATCBF2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4; full_name=C-repeat/DRE binding factor 2; computational_description=C-repeat/DRE binding factor 2 (CBF2)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 1 (TAIR:AT4G25490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10330472, PMID:9952441, PMID:9881163, PMID:9735350, PMID:9707537, PMID:11118137, PMID:11914065, PMID:12032361, PMID:12177491, PMID:12172015, PMID:12165572, PMID:12376631, PMID:12647068, PMID:12609047, PMID:12672693, PMID:12753580, PMID:14500791, PMID:15004278, PMID:15144380, PMID:15247382, PMID:15383661, PMID:15356394, PMID:15500469, PMID:15497440, PMID:15488017, PMID:15479616, PMID:15634197, PMID:15598798, PMID:15728337, PMID:16258011, PMID:16244146, PMID:16231185, PMID:17416732, PMID:17559507, PMID:17965713, PMID:18093929, PMID:18088305, PMID:18415686, PMID:18990244, PMID:19270186, PMID:17559519, PMID:19854800, PMID:19837816, PMID:20037472, PMID:20084169, PMID:20661629, PMID:20636906, PMID:21039566, PMID:21421342, PMID:21421341, PMID:21471455, PMID:21611181, PMID:21940717, PMID:22927419, PMID:23077584, PMID:23721132, PMID:24377444, PMID:23909712, PMID:24834923, PMID:25039860, PMID:25627253, locus:2131834; locus_type=protein_coding LOCN Exon COOR C/13015436-13016086 HITS AT4G07385.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07385.1 lnc_RNA ID=AT4G07385.1; Parent=AT4G07385; Name=AT4G07385.1; locus_type=long_noncoding_rna LOCN Exon COOR W/13017141-13018038 HITS AT4G25480.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25480.1 CDS ID=AT4G25480.1; Parent=AT4G25480; Name=AT4G25480.1; Note=dehydration response element B1A; curator_summary=encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to low temperature and abscisic acid.; conf_class=1; symbol=DREB1A; Alias=ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3; full_name=dehydration response element B1A; computational_description=dehydration response element B1A (DREB1A)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10330472, PMID:10096298, PMID:9952441, PMID:9881163, PMID:9735350, PMID:9707537, PMID:11118137, PMID:11115899, PMID:11798174, PMID:11158529, PMID:11387979, PMID:11914065, PMID:12032361, PMID:12177491, PMID:12172015, PMID:12165572, PMID:12164808, PMID:11999847, PMID:12376631, PMID:12647068, PMID:12609047, PMID:12672693, PMID:12753580, PMID:12715154, PMID:14519774, PMID:14630965, PMID:14871311, PMID:15004278, PMID:15047884, PMID:15190366, PMID:15165189, PMID:15247382, PMID:15356394, PMID:15356330, PMID:15728337, PMID:15834008, PMID:16258011, PMID:16244146, PMID:16231185, PMID:16284406, PMID:16617101, PMID:16614820, PMID:17015446, PMID:17316173, PMID:17346263, PMID:17453213, PMID:17416732, PMID:17483953, PMID:17556511, PMID:17653723, PMID:17965713, PMID:18093929, PMID:18088305, PMID:18415686, PMID:18523728, PMID:18650403, PMID:18990244, PMID:19363684, PMID:19502356, PMID:17172050, PMID:17559519, PMID:18713346, PMID:19704769, PMID:19802365, PMID:20084169, PMID:20566565, PMID:20639406, PMID:20686241, PMID:19959255, PMID:21039566, PMID:21349196, PMID:21447070, PMID:21421342, PMID:21421341, PMID:21408135, PMID:21471455, PMID:21707801, PMID:21696534, PMID:21940717, PMID:21971994, PMID:22070784, PMID:22336381, PMID:22325896, PMID:22385556, PMID:22634104, PMID:22927419, PMID:23077584, PMID:23286584, PMID:23483290, PMID:23625358, PMID:22672619, PMID:23792371, PMID:24179129, PMID:24398893, PMID:24377444, PMID:24223981, PMID:23909712, PMID:24834923, PMID:24811248, PMID:25048023, PMID:25103420, PMID:25184213, PMID:25461698, PMID:25443829, PMID:25627253, PMID:25643917, locus:2131849; locus_type=protein_coding LOCN Exon COOR C/13018353-13019003 HITS AT4TE60970[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60970 transposable_element ID=AT4TE60970; Name=AT4TE60970; Alias=DT1 LOCN Exon COOR W/13019880-13019982 HITS AT4G07395.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07395.1 lnc_RNA ID=AT4G07395.1; Parent=AT4G07395; Name=AT4G07395.1; locus_type=long_noncoding_rna LOCN Exon COOR W/13020018-13020604 HITS AT4G03125.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G03125.1 transcript_region ID=AT4G03125.1; Parent=AT4G03125; computational_description=novel transcribed region; Name=AT4G03125.1; locus_type=novel_transcribed_region LOCN Exon COOR W/13020260-13021522 HITS AT4G25490.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25490.1 CDS ID=AT4G25490.1; Parent=AT4G25490; Name=AT4G25490.1; Note=C-repeat/DRE binding factor 1; curator_summary=Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to low temperature and abscisic acid.; conf_class=1; symbol=CBF1; Alias=ATCBF1, DREB1B, DRE BINDING PROTEIN 1B; full_name=C-repeat/DRE binding factor 1; computational_description=C-repeat/DRE binding factor 1 (CBF1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10347158, PMID:10330472, PMID:9952441, PMID:9881163, PMID:9735350, PMID:9707537, PMID:9525853, PMID:9023378, PMID:11118137, PMID:11115899, PMID:11266554, PMID:11914065, PMID:12032361, PMID:12114563, PMID:12177491, PMID:12172015, PMID:12165572, PMID:12148528, PMID:11982943, PMID:12376631, PMID:12376629, PMID:12647068, PMID:12609047, PMID:12672693, PMID:12753580, PMID:14500791, PMID:15004278, PMID:15247382, PMID:15383661, PMID:15359131, PMID:15356394, PMID:15341633, PMID:15497440, PMID:15488017, PMID:15479616, PMID:15634197, PMID:15728337, PMID:15879704, PMID:16021338, PMID:16258011, PMID:16231185, PMID:16603259, PMID:16949955, PMID:17080948, PMID:17416732, PMID:17407531, PMID:17965713, PMID:18093929, PMID:18088305, PMID:18415686, PMID:18754079, PMID:18922165, PMID:19026725, PMID:18990244, PMID:17559519, PMID:18757556, PMID:19533627, PMID:19563440, PMID:19837816, PMID:19802365, PMID:19878300, PMID:20022137, PMID:19948259, PMID:20661629, PMID:20813832, PMID:20026608, PMID:21039566, PMID:21309983, PMID:21287175, PMID:21421342, PMID:21421341, PMID:21471455, PMID:21940717, PMID:22512351, PMID:22927419, PMID:22334687, PMID:23909712, PMID:24834923, PMID:25048023, PMID:25184213, PMID:25393623, PMID:25461698, PMID:25443829, PMID:25627253, PMID:25643917, locus:2131854; locus_type=protein_coding LOCN Exon COOR C/13021921-13022562 HITS AT4G25500.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.1 CDS ID=AT4G25500.1; Parent=AT4G25500; Name=AT4G25500.1; Note=arginine/serine-rich splicing factor 35; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13025168-13025273,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.4[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.4 CDS ID=AT4G25500.4; Parent=AT4G25500; Name=AT4G25500.4; Note=arginine/serine-rich splicing factor 35; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=4; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13025168-13025273,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.3 CDS ID=AT4G25500.3; Parent=AT4G25500; Name=AT4G25500.3; Note=arginine/serine-rich splicing factor 35; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13025850-13025856,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.6[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.6 CDS ID=AT4G25500.6; Parent=AT4G25500; Name=AT4G25500.6; Note=arginine/serine-rich splicing factor 35; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR W/13025850-13025856,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.2 CDS ID=AT4G25500.2; Parent=AT4G25500; Name=AT4G25500.2; Note=arginine/serine-rich splicing factor 35; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13026013-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.5[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.5 CDS ID=AT4G25500.5; Parent=AT4G25500; Name=AT4G25500.5; Note=arginine/serine-rich splicing factor 35; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13026013-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.7[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.7 CDS ID=AT4G25500.7; Parent=AT4G25500; Name=AT4G25500.7; Note=arginine/serine-rich splicing factor 35; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13026013-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.8[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.8 CDS ID=AT4G25500.8; Parent=AT4G25500; Name=AT4G25500.8; Note=arginine/serine-rich splicing factor 35; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13026013-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25510.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25510.1 CDS ID=AT4G25510.1; Parent=AT4G25510; Name=AT4G25510.1; Note=hypothetical protein; conf_class=9; computational_description=unknown protein%3B Has 2 Blast hits to 2 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:17899397, locus:2131874; locus_type=protein_coding LOCN Exon COOR C/13027443-13027503,13027648-13028036 HITS AT4G07405.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07405.1 antisense_lncRNA ID=AT4G07405.1; Parent=AT4G07405; Name=AT4G07405.1; description=Natural antisense transcript overlaps with AT4G25510; Note=Natural antisense transcript overlaps with AT4G25510; locus_type=antisense_long_noncoding_rna LOCN Exon COOR W/13027581-13028194 HITS AT4G07405.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07405.2 antisense_lncRNA ID=AT4G07405.2; Parent=AT4G07405; Name=AT4G07405.2; description=Natural antisense transcript overlaps with AT4G25510; Note=Natural antisense transcript overlaps with AT4G25510; locus_type=antisense_long_noncoding_rna LOCN Exon COOR W/13027581-13028194 HITS AT4G07405.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07405.3 antisense_lncRNA ID=AT4G07405.3; Parent=AT4G07405; Name=AT4G07405.3; description=Natural antisense transcript overlaps with AT4G25510; Note=Natural antisense transcript overlaps with AT4G25510; locus_type=antisense_long_noncoding_rna LOCN Exon COOR W/13027581-13028194 HITS AT4G25515.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25515.1 CDS ID=AT4G25515.1; Parent=AT4G25515; Name=AT4G25515.1; Note=SEUSS-like 3; conf_class=2; symbol=SLK3; full_name=SEUSS-like 3; computational_description=SEUSS-like 3 (SLK3)%3B BEST Arabidopsis thaliana protein match is: SEUSS-like 1 (TAIR:AT4G25520.1)%3B Has 4377 Blast hits to 3114 proteins in 231 species: Archae - 0%3B Bacteria - 84%3B Metazoa - 736%3B Fungi - 339%3B Plants - 190%3B Viruses - 30%3B Other Eukaryotes - 2998 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782418, PMID:20007451, locus:504955415; locus_type=protein_coding LOCN Exon COOR W/13028219-13028749,13028832-13028963,13029129-13029177,13029352-13029566,13029701-13029769,13030031-13030131,13030266-13030359,13030445-13030514,13030667-13031463 HITS AT4G25520.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25520.1 CDS ID=AT4G25520.1; Parent=AT4G25520; Name=AT4G25520.1; Note=SEUSS-like 1; conf_class=2; symbol=SLK1; full_name=SEUSS-like 1; computational_description=SEUSS-like 1 (SLK1)%3B BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782418, PMID:14576160, PMID:18804526, PMID:20007451, PMID:24564815, locus:2131804; locus_type=protein_coding LOCN Exon COOR C/13032450-13033351,13033522-13033591,13033674-13033767,13033860-13033960,13034222-13034290,13034392-13034606,13034767-13034815,13034981-13035112,13035189-13035803 HITS AT4G25520.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25520.2 CDS ID=AT4G25520.2; Parent=AT4G25520; Name=AT4G25520.2; Note=SEUSS-like 1; symbol=SLK1; full_name=SEUSS-like 1; Dbxref=PMID:11782418, PMID:14576160, PMID:18804526, PMID:20007451, PMID:24564815, locus:2131804; computational_description=SEUSS-like 1 (SLK1)%3B BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR C/13032450-13033351,13033522-13033591,13033674-13033767,13033860-13033960,13034222-13034290,13034392-13034606,13034767-13034815,13034981-13035112,13035189-13035803 HITS AT4G25530.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25530.1 CDS ID=AT4G25530.1; Parent=AT4G25530; Name=AT4G25530.1; Note=FLOWERING WAGENINGEN; curator_summary=Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.; conf_class=1; symbol=FWA; Alias=HDG6, HOMEODOMAIN GLABROUS 6; full_name=FLOWERING WAGENINGEN; computational_description=FLOWERING WAGENINGEN (FWA)%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 7 (TAIR:AT5G52170.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10852935, PMID:10652130, PMID:10518493, PMID:10501030, PMID:9615462, PMID:9450349, PMID:9401118, PMID:8628249, PMID:1896021, PMID:11118137, PMID:12121623, PMID:12232170, PMID:12520338, PMID:12663548, PMID:11382816, PMID:12941876, PMID:12941870, PMID:14526112, PMID:14631047, PMID:15117265, PMID:15269773, PMID:15242620, PMID:11090618, PMID:16120596, PMID:16489130, PMID:16527743, PMID:16648367, PMID:16778018, PMID:17105345, PMID:17189287, PMID:17144899, PMID:17964287, PMID:17921315, PMID:18282134, PMID:18643997, PMID:18700816, PMID:18389059, PMID:20333248, PMID:20226671, PMID:20736450, PMID:21150311, PMID:21307831, PMID:21518889, PMID:21457364, PMID:21889057, PMID:22519754, PMID:22555436, PMID:22995285, PMID:23734982, PMID:23836195, PMID:24808013, PMID:24990959, PMID:25197096, PMID:25569774, PMID:25561534, locus:2131814; locus_type=protein_coding LOCN Exon COOR W/13039312-13039481,13039603-13039720,13039917-13040501,13040589-13040690,13040785-13040988,13041160-13041331,13041445-13041812,13041901-13042242 HITS AT4G25540.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25540.1 CDS ID=AT4G25540.1; Parent=AT4G25540; Name=AT4G25540.1; Note=homolog of DNA mismatch repair protein MSH3; curator_summary=encodes a DNA mismatch repair homolog of human MutS gene%2C MSH6. There are four MutS genes in Arabidopsis%2C MSH2%2C MSH3%2C MSH6%2C and MSH7%2C which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; conf_class=1; symbol=MSH3; Alias=ATMSH3; full_name=homolog of DNA mismatch repair protein MSH3; computational_description=homolog of DNA mismatch repair protein MSH3 (MSH3)%3B CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS%2C clamp (InterPro:IPR007861)%2C DNA mismatch repair protein MutS%2C connector (InterPro:IPR007860)%2C DNA mismatch repair protein MutS%2C N-terminal (InterPro:IPR016151)%2C DNA mismatch repair protein MutS%2C core (InterPro:IPR007696)%2C DNA mismatch repair protein MutS%2C C-terminal (InterPro:IPR000432)%2C DNA mismatch repair protein MutS-like%2C N-terminal (InterPro:IPR007695)%3B BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2)%3B Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153%3B Bacteria - 9793%3B Metazoa - 705%3B Fungi - 864%3B Plants - 451%3B Viruses - 3%3B Other Eukaryotes - 2578 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10852942, PMID:10517319, PMID:11130711, PMID:14576160, PMID:15053760, PMID:16126853, PMID:17014743, PMID:18775970, PMID:24652625, locus:2131829; locus_type=protein_coding LOCN Exon COOR C/13042700-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044342,13044680-13044811,13044972-13045226,13045722-13045973,13046216-13046314,13046403-13046567,13046731-13046922,13047180-13048115 HITS AT4G25550.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25550.1 CDS ID=AT4G25550.1; Parent=AT4G25550; Name=AT4G25550.1; Note=Cleavage/polyadenylation specificity factor%2C 25kDa subunit; conf_class=1; computational_description=Cleavage/polyadenylation specificity factor%2C 25kDa subunit%3B CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor%2C 25kDa subunit (InterPro:IPR016706)%3B BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1)%3B Has 397 Blast hits to 397 proteins in 170 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 171%3B Fungi - 88%3B Plants - 70%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16282318, PMID:18479511, locus:2131839; locus_type=protein_coding LOCN Exon COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050873 HITS AT4G25560.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25560.1 CDS ID=AT4G25560.1; Parent=AT4G25560; Name=AT4G25560.1; Note=myb domain protein 18; curator_summary=LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.; conf_class=2; symbol=LAF1; Alias=AtMYB18, myb domain protein 18, MYB18, myb domain protein 18; full_name=LONG AFTER FAR-RED LIGHT 1; computational_description=myb domain protein 18 (MYB18)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1)%3B Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 744%3B Fungi - 438%3B Plants - 5747%3B Viruses - 4%3B Other Eukaryotes - 1783 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:11581165, PMID:15741320, PMID:15960622, PMID:16463103, PMID:12827204, PMID:17699755, PMID:19482971, PMID:23503597, locus:2131844; locus_type=protein_coding LOCN Exon COOR W/13052555-13052681,13052769-13052898,13052979-13053573 HITS AT4G25560.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25560.2 CDS ID=AT4G25560.2; Parent=AT4G25560; Name=AT4G25560.2; Note=myb domain protein 18; symbol=LAF1; Alias=AtMYB18, myb domain protein 18, MYB18, myb domain protein 18; full_name=LONG AFTER FAR-RED LIGHT 1; curator_summary=LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.; computational_description=myb domain protein 18 (MYB18)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1)%3B Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 744%3B Fungi - 438%3B Plants - 5747%3B Viruses - 4%3B Other Eukaryotes - 1783 (source: NCBI BLink).; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:11581165, PMID:15741320, PMID:15960622, PMID:16463103, PMID:12827204, PMID:17699755, PMID:19482971, PMID:23503597, locus:2131844; locus_type=protein_coding LOCN Exon COOR W/13052840-13052898,13052979-13053573 HITS AT4G25570.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25570.1 CDS ID=AT4G25570.1; Parent=AT4G25570; Name=AT4G25570.1; Note=Cytochrome b561/ferric reductase transmembrane protein family; curator_summary=Encodes cytochrome b561.; conf_class=2; symbol=ACYB-2; computational_description=ACYB-2%3B FUNCTIONS IN: carbon-monoxide oxygenase activity%3B LOCATED IN: integral to membrane%2C chloroplast%2C vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome b561%2C eukaryote (InterPro:IPR004877)%2C Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593)%3B BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14730083, PMID:15032866, PMID:15215502, PMID:16581873, PMID:18650403, PMID:20736450, locus:2131859; locus_type=protein_coding LOCN Exon COOR C/13053887-13054213,13054522-13054721,13054846-13054894,13055375-13055518 HITS AT4G25570.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25570.2 CDS ID=AT4G25570.2; Parent=AT4G25570; Name=AT4G25570.2; Note=Cytochrome b561/ferric reductase transmembrane protein family; symbol=ACYB-2; curator_summary=Encodes cytochrome b561.; computational_description=ACYB-2%3B FUNCTIONS IN: carbon-monoxide oxygenase activity%3B LOCATED IN: integral to membrane%2C chloroplast%2C vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome b561%2C eukaryote (InterPro:IPR004877)%2C Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593)%3B BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:14730083, PMID:15032866, PMID:15215502, PMID:16581873, PMID:18650403, PMID:20736450, locus:2131859; locus_type=protein_coding LOCN Exon COOR C/13053887-13054213,13054522-13054721,13054846-13054894,13055375-13055641 HITS AT4G25580.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25580.1 CDS ID=AT4G25580.1; Parent=AT4G25580; Name=AT4G25580.1; Note=CAP160 protein; conf_class=2; computational_description=CAP160 protein%3B CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418)%3B BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1)%3B Has 292 Blast hits to 249 proteins in 85 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 66%3B Fungi - 33%3B Plants - 116%3B Viruses - 9%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12753585, PMID:12857845, PMID:14973164, PMID:16284313, PMID:17227549, PMID:17346263, locus:2131869; locus_type=protein_coding LOCN Exon COOR W/13056320-13056395,13056514-13056717,13056797-13057189,13057293-13057460,13057535-13058479,13058563-13058657 HITS AT4G25580.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25580.2 CDS ID=AT4G25580.2; Parent=AT4G25580; Name=AT4G25580.2; Note=CAP160 protein; computational_description=CAP160 protein%3B CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418)%3B BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1)%3B Has 292 Blast hits to 249 proteins in 85 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 66%3B Fungi - 33%3B Plants - 116%3B Viruses - 9%3B Other Eukaryotes - 42 (source: NCBI BLink).; Dbxref=PMID:12753585, PMID:12857845, PMID:14973164, PMID:16284313, PMID:17227549, PMID:17346263, locus:2131869; locus_type=protein_coding LOCN Exon COOR W/13056320-13056395,13056514-13056717,13056797-13057189,13057293-13057460,13057535-13058523