CLON JAtY54O02[About JAtY] 
TYPE JAtY TAC
CHRO chr4
EVAL 0.0
COOR W/13012060-13108496

HITS AT4G25450.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25450.1 CDS ID=AT4G25450.1; Parent=AT4G25450; Name=AT4G25450.1; Note=non-intrinsic ABC protein 8; curator_summary=member of NAP subfamily; conf_class=2; symbol=ABCB28; Alias=ATNAP8, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, NAP8, non-intrinsic ABC protein 8; full_name=ATP-binding cassette B28; computational_description=non-intrinsic ABC protein 8 (NAP8)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1)%3B Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380%3B Bacteria - 322963%3B Metazoa - 9904%3B Fungi - 7465%3B Plants - 5560%3B Viruses - 14%3B Other Eukaryotes - 63700 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:11855639, PMID:12766230, PMID:15381434, PMID:16244146, PMID:16282320, PMID:17164256, PMID:17432890, PMID:17899397, PMID:18299247, locus:2131809; locus_type=protein_coding LOCN Exon COOR C/13009845-13010081,13010231-13010287,13010373-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013345,13013522-13013912 HITS AT4G25450.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25450.3 CDS ID=AT4G25450.3; Parent=AT4G25450; Name=AT4G25450.3; Note=non-intrinsic ABC protein 8; curator_summary=member of NAP subfamily; conf_class=2; symbol=ABCB28; Alias=ATNAP8, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, NAP8, non-intrinsic ABC protein 8; full_name=ATP-binding cassette B28; computational_description=non-intrinsic ABC protein 8 (NAP8)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1)%3B Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380%3B Bacteria - 322963%3B Metazoa - 9904%3B Fungi - 7465%3B Plants - 5560%3B Viruses - 14%3B Other Eukaryotes - 63700 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:11855639, PMID:12766230, PMID:15381434, PMID:16244146, PMID:16282320, PMID:17164256, PMID:17432890, PMID:17899397, PMID:18299247, locus:2131809; locus_type=protein_coding LOCN Exon COOR C/13009845-13010081,13010231-13010287,13010373-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013229 HITS AT4G25450.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25450.2 CDS ID=AT4G25450.2; Parent=AT4G25450; Name=AT4G25450.2; Note=non-intrinsic ABC protein 8; curator_summary=member of NAP subfamily; conf_class=2; symbol=ABCB28; Alias=ATNAP8, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, NAP8, non-intrinsic ABC protein 8; full_name=ATP-binding cassette B28; computational_description=non-intrinsic ABC protein 8 (NAP8)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1)%3B Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380%3B Bacteria - 322963%3B Metazoa - 9904%3B Fungi - 7465%3B Plants - 5560%3B Viruses - 14%3B Other Eukaryotes - 63700 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:11855639, PMID:12766230, PMID:15381434, PMID:16244146, PMID:16282320, PMID:17164256, PMID:17432890, PMID:17899397, PMID:18299247, locus:2131809; locus_type=protein_coding LOCN Exon COOR C/13010367-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013345,13013522-13013912 HITS AT4G25470.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25470.1 CDS ID=AT4G25470.1; Parent=AT4G25470; Name=AT4G25470.1; Note=C-repeat/DRE binding factor 2; curator_summary=Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to low temperature%2C abscisic acid%2C and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes%2C which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3%2C suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.; conf_class=1; symbol=CBF2; Alias=ATCBF2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4; full_name=C-repeat/DRE binding factor 2; computational_description=C-repeat/DRE binding factor 2 (CBF2)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 1 (TAIR:AT4G25490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10330472, PMID:9952441, PMID:9881163, PMID:9735350, PMID:9707537, PMID:11118137, PMID:11914065, PMID:12032361, PMID:12177491, PMID:12172015, PMID:12165572, PMID:12376631, PMID:12647068, PMID:12609047, PMID:12672693, PMID:12753580, PMID:14500791, PMID:15004278, PMID:15144380, PMID:15247382, PMID:15383661, PMID:15356394, PMID:15500469, PMID:15497440, PMID:15488017, PMID:15479616, PMID:15634197, PMID:15598798, PMID:15728337, PMID:16258011, PMID:16244146, PMID:16231185, PMID:17416732, PMID:17559507, PMID:17965713, PMID:18093929, PMID:18088305, PMID:18415686, PMID:18990244, PMID:19270186, PMID:17559519, PMID:19854800, PMID:19837816, PMID:20037472, PMID:20084169, PMID:20661629, PMID:20636906, PMID:21039566, PMID:21421342, PMID:21421341, PMID:21471455, PMID:21611181, PMID:21940717, PMID:22927419, PMID:23077584, PMID:23721132, PMID:24377444, PMID:23909712, PMID:24834923, PMID:25039860, PMID:25627253, locus:2131834; locus_type=protein_coding LOCN Exon COOR C/13015436-13016086 HITS AT4G07385.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07385.1 lnc_RNA ID=AT4G07385.1; Parent=AT4G07385; Name=AT4G07385.1; locus_type=long_noncoding_rna LOCN Exon COOR W/13017141-13018038 HITS AT4G25480.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25480.1 CDS ID=AT4G25480.1; Parent=AT4G25480; Name=AT4G25480.1; Note=dehydration response element B1A; curator_summary=encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to low temperature and abscisic acid.; conf_class=1; symbol=DREB1A; Alias=ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3; full_name=dehydration response element B1A; computational_description=dehydration response element B1A (DREB1A)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10330472, PMID:10096298, PMID:9952441, PMID:9881163, PMID:9735350, PMID:9707537, PMID:11118137, PMID:11115899, PMID:11798174, PMID:11158529, PMID:11387979, PMID:11914065, PMID:12032361, PMID:12177491, PMID:12172015, PMID:12165572, PMID:12164808, PMID:11999847, PMID:12376631, PMID:12647068, PMID:12609047, PMID:12672693, PMID:12753580, PMID:12715154, PMID:14519774, PMID:14630965, PMID:14871311, PMID:15004278, PMID:15047884, PMID:15190366, PMID:15165189, PMID:15247382, PMID:15356394, PMID:15356330, PMID:15728337, PMID:15834008, PMID:16258011, PMID:16244146, PMID:16231185, PMID:16284406, PMID:16617101, PMID:16614820, PMID:17015446, PMID:17316173, PMID:17346263, PMID:17453213, PMID:17416732, PMID:17483953, PMID:17556511, PMID:17653723, PMID:17965713, PMID:18093929, PMID:18088305, PMID:18415686, PMID:18523728, PMID:18650403, PMID:18990244, PMID:19363684, PMID:19502356, PMID:17172050, PMID:17559519, PMID:18713346, PMID:19704769, PMID:19802365, PMID:20084169, PMID:20566565, PMID:20639406, PMID:20686241, PMID:19959255, PMID:21039566, PMID:21349196, PMID:21447070, PMID:21421342, PMID:21421341, PMID:21408135, PMID:21471455, PMID:21707801, PMID:21696534, PMID:21940717, PMID:21971994, PMID:22070784, PMID:22336381, PMID:22325896, PMID:22385556, PMID:22634104, PMID:22927419, PMID:23077584, PMID:23286584, PMID:23483290, PMID:23625358, PMID:22672619, PMID:23792371, PMID:24179129, PMID:24398893, PMID:24377444, PMID:24223981, PMID:23909712, PMID:24834923, PMID:24811248, PMID:25048023, PMID:25103420, PMID:25184213, PMID:25461698, PMID:25443829, PMID:25627253, PMID:25643917, locus:2131849; locus_type=protein_coding LOCN Exon COOR C/13018353-13019003 HITS AT4TE60970[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE60970 transposable_element ID=AT4TE60970; Name=AT4TE60970; Alias=DT1 LOCN Exon COOR W/13019880-13019982 HITS AT4G07395.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07395.1 lnc_RNA ID=AT4G07395.1; Parent=AT4G07395; Name=AT4G07395.1; locus_type=long_noncoding_rna LOCN Exon COOR W/13020018-13020604 HITS AT4G03125.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G03125.1 transcript_region ID=AT4G03125.1; Parent=AT4G03125; computational_description=novel transcribed region; Name=AT4G03125.1; locus_type=novel_transcribed_region LOCN Exon COOR W/13020260-13021522 HITS AT4G25490.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25490.1 CDS ID=AT4G25490.1; Parent=AT4G25490; Name=AT4G25490.1; Note=C-repeat/DRE binding factor 1; curator_summary=Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to low temperature and abscisic acid.; conf_class=1; symbol=CBF1; Alias=ATCBF1, DREB1B, DRE BINDING PROTEIN 1B; full_name=C-repeat/DRE binding factor 1; computational_description=C-repeat/DRE binding factor 1 (CBF1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10347158, PMID:10330472, PMID:9952441, PMID:9881163, PMID:9735350, PMID:9707537, PMID:9525853, PMID:9023378, PMID:11118137, PMID:11115899, PMID:11266554, PMID:11914065, PMID:12032361, PMID:12114563, PMID:12177491, PMID:12172015, PMID:12165572, PMID:12148528, PMID:11982943, PMID:12376631, PMID:12376629, PMID:12647068, PMID:12609047, PMID:12672693, PMID:12753580, PMID:14500791, PMID:15004278, PMID:15247382, PMID:15383661, PMID:15359131, PMID:15356394, PMID:15341633, PMID:15497440, PMID:15488017, PMID:15479616, PMID:15634197, PMID:15728337, PMID:15879704, PMID:16021338, PMID:16258011, PMID:16231185, PMID:16603259, PMID:16949955, PMID:17080948, PMID:17416732, PMID:17407531, PMID:17965713, PMID:18093929, PMID:18088305, PMID:18415686, PMID:18754079, PMID:18922165, PMID:19026725, PMID:18990244, PMID:17559519, PMID:18757556, PMID:19533627, PMID:19563440, PMID:19837816, PMID:19802365, PMID:19878300, PMID:20022137, PMID:19948259, PMID:20661629, PMID:20813832, PMID:20026608, PMID:21039566, PMID:21309983, PMID:21287175, PMID:21421342, PMID:21421341, PMID:21471455, PMID:21940717, PMID:22512351, PMID:22927419, PMID:22334687, PMID:23909712, PMID:24834923, PMID:25048023, PMID:25184213, PMID:25393623, PMID:25461698, PMID:25443829, PMID:25627253, PMID:25643917, locus:2131854; locus_type=protein_coding LOCN Exon COOR C/13021921-13022562 HITS AT4G25500.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.1 CDS ID=AT4G25500.1; Parent=AT4G25500; Name=AT4G25500.1; Note=arginine/serine-rich splicing factor 35; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13025168-13025273,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.4[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.4 CDS ID=AT4G25500.4; Parent=AT4G25500; Name=AT4G25500.4; Note=arginine/serine-rich splicing factor 35; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=4; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13025168-13025273,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.3 CDS ID=AT4G25500.3; Parent=AT4G25500; Name=AT4G25500.3; Note=arginine/serine-rich splicing factor 35; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13025850-13025856,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.6[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.6 CDS ID=AT4G25500.6; Parent=AT4G25500; Name=AT4G25500.6; Note=arginine/serine-rich splicing factor 35; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR W/13025850-13025856,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.2 CDS ID=AT4G25500.2; Parent=AT4G25500; Name=AT4G25500.2; Note=arginine/serine-rich splicing factor 35; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13026013-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.5[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.5 CDS ID=AT4G25500.5; Parent=AT4G25500; Name=AT4G25500.5; Note=arginine/serine-rich splicing factor 35; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13026013-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.7[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.7 CDS ID=AT4G25500.7; Parent=AT4G25500; Name=AT4G25500.7; Note=arginine/serine-rich splicing factor 35; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13026013-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25500.8[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25500.8 CDS ID=AT4G25500.8; Parent=AT4G25500; Name=AT4G25500.8; Note=arginine/serine-rich splicing factor 35; symbol=RS40; Alias=AT-SRP40, ATRSP35, ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ATRSP40, At-RS40, arginine/serine-rich splicing factor 40, RSP35, arginine/serine-rich splicing factor 35; full_name=arginine/serine-rich splicing factor 40; curator_summary=encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink).; Dbxref=PMID:8989882, PMID:15133128, PMID:15270675, PMID:15452276, PMID:16214899, PMID:16520337, PMID:16807317, PMID:16936312, PMID:16972165, PMID:17556373, PMID:17899397, PMID:18650403, PMID:20884799, PMID:21935421, PMID:24146632, PMID:25268622, locus:2131864; locus_type=protein_coding LOCN Exon COOR W/13026013-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS AT4G25510.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25510.1 CDS ID=AT4G25510.1; Parent=AT4G25510; Name=AT4G25510.1; Note=hypothetical protein; conf_class=9; computational_description=unknown protein%3B Has 2 Blast hits to 2 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:17899397, locus:2131874; locus_type=protein_coding LOCN Exon COOR C/13027443-13027503,13027648-13028036 HITS AT4G07405.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07405.1 antisense_lncRNA ID=AT4G07405.1; Parent=AT4G07405; Name=AT4G07405.1; description=Natural antisense transcript overlaps with AT4G25510; Note=Natural antisense transcript overlaps with AT4G25510; locus_type=antisense_long_noncoding_rna LOCN Exon COOR W/13027581-13028194 HITS AT4G07405.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07405.2 antisense_lncRNA ID=AT4G07405.2; Parent=AT4G07405; Name=AT4G07405.2; description=Natural antisense transcript overlaps with AT4G25510; Note=Natural antisense transcript overlaps with AT4G25510; locus_type=antisense_long_noncoding_rna LOCN Exon COOR W/13027581-13028194 HITS AT4G07405.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07405.3 antisense_lncRNA ID=AT4G07405.3; Parent=AT4G07405; Name=AT4G07405.3; description=Natural antisense transcript overlaps with AT4G25510; Note=Natural antisense transcript overlaps with AT4G25510; locus_type=antisense_long_noncoding_rna LOCN Exon COOR W/13027581-13028194 HITS AT4G25515.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25515.1 CDS ID=AT4G25515.1; Parent=AT4G25515; Name=AT4G25515.1; Note=SEUSS-like 3; conf_class=2; symbol=SLK3; full_name=SEUSS-like 3; computational_description=SEUSS-like 3 (SLK3)%3B BEST Arabidopsis thaliana protein match is: SEUSS-like 1 (TAIR:AT4G25520.1)%3B Has 4377 Blast hits to 3114 proteins in 231 species: Archae - 0%3B Bacteria - 84%3B Metazoa - 736%3B Fungi - 339%3B Plants - 190%3B Viruses - 30%3B Other Eukaryotes - 2998 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782418, PMID:20007451, locus:504955415; locus_type=protein_coding LOCN Exon COOR W/13028219-13028749,13028832-13028963,13029129-13029177,13029352-13029566,13029701-13029769,13030031-13030131,13030266-13030359,13030445-13030514,13030667-13031463 HITS AT4G25520.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25520.1 CDS ID=AT4G25520.1; Parent=AT4G25520; Name=AT4G25520.1; Note=SEUSS-like 1; conf_class=2; symbol=SLK1; full_name=SEUSS-like 1; computational_description=SEUSS-like 1 (SLK1)%3B BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782418, PMID:14576160, PMID:18804526, PMID:20007451, PMID:24564815, locus:2131804; locus_type=protein_coding LOCN Exon COOR C/13032450-13033351,13033522-13033591,13033674-13033767,13033860-13033960,13034222-13034290,13034392-13034606,13034767-13034815,13034981-13035112,13035189-13035803 HITS AT4G25520.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25520.2 CDS ID=AT4G25520.2; Parent=AT4G25520; Name=AT4G25520.2; Note=SEUSS-like 1; symbol=SLK1; full_name=SEUSS-like 1; Dbxref=PMID:11782418, PMID:14576160, PMID:18804526, PMID:20007451, PMID:24564815, locus:2131804; computational_description=SEUSS-like 1 (SLK1)%3B BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR C/13032450-13033351,13033522-13033591,13033674-13033767,13033860-13033960,13034222-13034290,13034392-13034606,13034767-13034815,13034981-13035112,13035189-13035803 HITS AT4G25530.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25530.1 CDS ID=AT4G25530.1; Parent=AT4G25530; Name=AT4G25530.1; Note=FLOWERING WAGENINGEN; curator_summary=Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.; conf_class=1; symbol=FWA; Alias=HDG6, HOMEODOMAIN GLABROUS 6; full_name=FLOWERING WAGENINGEN; computational_description=FLOWERING WAGENINGEN (FWA)%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 7 (TAIR:AT5G52170.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10852935, PMID:10652130, PMID:10518493, PMID:10501030, PMID:9615462, PMID:9450349, PMID:9401118, PMID:8628249, PMID:1896021, PMID:11118137, PMID:12121623, PMID:12232170, PMID:12520338, PMID:12663548, PMID:11382816, PMID:12941876, PMID:12941870, PMID:14526112, PMID:14631047, PMID:15117265, PMID:15269773, PMID:15242620, PMID:11090618, PMID:16120596, PMID:16489130, PMID:16527743, PMID:16648367, PMID:16778018, PMID:17105345, PMID:17189287, PMID:17144899, PMID:17964287, PMID:17921315, PMID:18282134, PMID:18643997, PMID:18700816, PMID:18389059, PMID:20333248, PMID:20226671, PMID:20736450, PMID:21150311, PMID:21307831, PMID:21518889, PMID:21457364, PMID:21889057, PMID:22519754, PMID:22555436, PMID:22995285, PMID:23734982, PMID:23836195, PMID:24808013, PMID:24990959, PMID:25197096, PMID:25569774, PMID:25561534, locus:2131814; locus_type=protein_coding LOCN Exon COOR W/13039312-13039481,13039603-13039720,13039917-13040501,13040589-13040690,13040785-13040988,13041160-13041331,13041445-13041812,13041901-13042242 HITS AT4G25540.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25540.1 CDS ID=AT4G25540.1; Parent=AT4G25540; Name=AT4G25540.1; Note=homolog of DNA mismatch repair protein MSH3; curator_summary=encodes a DNA mismatch repair homolog of human MutS gene%2C MSH6. There are four MutS genes in Arabidopsis%2C MSH2%2C MSH3%2C MSH6%2C and MSH7%2C which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; conf_class=1; symbol=MSH3; Alias=ATMSH3; full_name=homolog of DNA mismatch repair protein MSH3; computational_description=homolog of DNA mismatch repair protein MSH3 (MSH3)%3B CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS%2C clamp (InterPro:IPR007861)%2C DNA mismatch repair protein MutS%2C connector (InterPro:IPR007860)%2C DNA mismatch repair protein MutS%2C N-terminal (InterPro:IPR016151)%2C DNA mismatch repair protein MutS%2C core (InterPro:IPR007696)%2C DNA mismatch repair protein MutS%2C C-terminal (InterPro:IPR000432)%2C DNA mismatch repair protein MutS-like%2C N-terminal (InterPro:IPR007695)%3B BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2)%3B Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153%3B Bacteria - 9793%3B Metazoa - 705%3B Fungi - 864%3B Plants - 451%3B Viruses - 3%3B Other Eukaryotes - 2578 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10852942, PMID:10517319, PMID:11130711, PMID:14576160, PMID:15053760, PMID:16126853, PMID:17014743, PMID:18775970, PMID:24652625, locus:2131829; locus_type=protein_coding LOCN Exon COOR C/13042700-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044342,13044680-13044811,13044972-13045226,13045722-13045973,13046216-13046314,13046403-13046567,13046731-13046922,13047180-13048115 HITS AT4G25550.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25550.1 CDS ID=AT4G25550.1; Parent=AT4G25550; Name=AT4G25550.1; Note=Cleavage/polyadenylation specificity factor%2C 25kDa subunit; conf_class=1; computational_description=Cleavage/polyadenylation specificity factor%2C 25kDa subunit%3B CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor%2C 25kDa subunit (InterPro:IPR016706)%3B BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1)%3B Has 397 Blast hits to 397 proteins in 170 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 171%3B Fungi - 88%3B Plants - 70%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16282318, PMID:18479511, locus:2131839; locus_type=protein_coding LOCN Exon COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050873 HITS AT4G25560.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25560.1 CDS ID=AT4G25560.1; Parent=AT4G25560; Name=AT4G25560.1; Note=myb domain protein 18; curator_summary=LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.; conf_class=2; symbol=LAF1; Alias=AtMYB18, myb domain protein 18, MYB18, myb domain protein 18; full_name=LONG AFTER FAR-RED LIGHT 1; computational_description=myb domain protein 18 (MYB18)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1)%3B Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 744%3B Fungi - 438%3B Plants - 5747%3B Viruses - 4%3B Other Eukaryotes - 1783 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:11581165, PMID:15741320, PMID:15960622, PMID:16463103, PMID:12827204, PMID:17699755, PMID:19482971, PMID:23503597, locus:2131844; locus_type=protein_coding LOCN Exon COOR W/13052555-13052681,13052769-13052898,13052979-13053573 HITS AT4G25560.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25560.2 CDS ID=AT4G25560.2; Parent=AT4G25560; Name=AT4G25560.2; Note=myb domain protein 18; symbol=LAF1; Alias=AtMYB18, myb domain protein 18, MYB18, myb domain protein 18; full_name=LONG AFTER FAR-RED LIGHT 1; curator_summary=LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.; computational_description=myb domain protein 18 (MYB18)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1)%3B Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 744%3B Fungi - 438%3B Plants - 5747%3B Viruses - 4%3B Other Eukaryotes - 1783 (source: NCBI BLink).; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:11581165, PMID:15741320, PMID:15960622, PMID:16463103, PMID:12827204, PMID:17699755, PMID:19482971, PMID:23503597, locus:2131844; locus_type=protein_coding LOCN Exon COOR W/13052840-13052898,13052979-13053573 HITS AT4G25570.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25570.1 CDS ID=AT4G25570.1; Parent=AT4G25570; Name=AT4G25570.1; Note=Cytochrome b561/ferric reductase transmembrane protein family; curator_summary=Encodes cytochrome b561.; conf_class=2; symbol=ACYB-2; computational_description=ACYB-2%3B FUNCTIONS IN: carbon-monoxide oxygenase activity%3B LOCATED IN: integral to membrane%2C chloroplast%2C vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome b561%2C eukaryote (InterPro:IPR004877)%2C Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593)%3B BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14730083, PMID:15032866, PMID:15215502, PMID:16581873, PMID:18650403, PMID:20736450, locus:2131859; locus_type=protein_coding LOCN Exon COOR C/13053887-13054213,13054522-13054721,13054846-13054894,13055375-13055518 HITS AT4G25570.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25570.2 CDS ID=AT4G25570.2; Parent=AT4G25570; Name=AT4G25570.2; Note=Cytochrome b561/ferric reductase transmembrane protein family; symbol=ACYB-2; curator_summary=Encodes cytochrome b561.; computational_description=ACYB-2%3B FUNCTIONS IN: carbon-monoxide oxygenase activity%3B LOCATED IN: integral to membrane%2C chloroplast%2C vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome b561%2C eukaryote (InterPro:IPR004877)%2C Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593)%3B BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:14730083, PMID:15032866, PMID:15215502, PMID:16581873, PMID:18650403, PMID:20736450, locus:2131859; locus_type=protein_coding LOCN Exon COOR C/13053887-13054213,13054522-13054721,13054846-13054894,13055375-13055641 HITS AT4G25580.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25580.1 CDS ID=AT4G25580.1; Parent=AT4G25580; Name=AT4G25580.1; Note=CAP160 protein; conf_class=2; computational_description=CAP160 protein%3B CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418)%3B BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1)%3B Has 292 Blast hits to 249 proteins in 85 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 66%3B Fungi - 33%3B Plants - 116%3B Viruses - 9%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12753585, PMID:12857845, PMID:14973164, PMID:16284313, PMID:17227549, PMID:17346263, locus:2131869; locus_type=protein_coding LOCN Exon COOR W/13056320-13056395,13056514-13056717,13056797-13057189,13057293-13057460,13057535-13058479,13058563-13058657 HITS AT4G25580.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25580.2 CDS ID=AT4G25580.2; Parent=AT4G25580; Name=AT4G25580.2; Note=CAP160 protein; computational_description=CAP160 protein%3B CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418)%3B BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1)%3B Has 292 Blast hits to 249 proteins in 85 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 66%3B Fungi - 33%3B Plants - 116%3B Viruses - 9%3B Other Eukaryotes - 42 (source: NCBI BLink).; Dbxref=PMID:12753585, PMID:12857845, PMID:14973164, PMID:16284313, PMID:17227549, PMID:17346263, locus:2131869; locus_type=protein_coding LOCN Exon COOR W/13056320-13056395,13056514-13056717,13056797-13057189,13057293-13057460,13057535-13058523 HITS AT4G25585.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25585.1 tRNA ID=AT4G25585.1; Parent=AT4G25585; Note=tRNA-Ser; computational_description=tRNA-Ser (anticodon: TGA); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:1005716303; Name=AT4G25585.1; locus_type=pre_trna LOCN Exon COOR C/13058832-13058913 HITS AT4G25590.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25590.1 CDS ID=AT4G25590.1; Parent=AT4G25590; Name=AT4G25590.1; Note=actin depolymerizing factor 7; conf_class=1; symbol=ADF7; full_name=actin depolymerizing factor 7; computational_description=actin depolymerizing factor 7 (ADF7)%3B FUNCTIONS IN: actin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Actin-binding%2C cofilin/tropomyosin type (InterPro:IPR002108)%3B BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 10 (TAIR:AT5G52360.1)%3B Has 1500 Blast hits to 1497 proteins in 263 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 654%3B Fungi - 151%3B Plants - 513%3B Viruses - 0%3B Other Eukaryotes - 179 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14500793, PMID:16247729, PMID:17877706, PMID:18775970, PMID:21632657, PMID:22751315, PMID:24058157, locus:2131879; locus_type=protein_coding LOCN Exon COOR C/13059137-13059287,13059388-13059647,13060048-13060050 HITS AT4G25590.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25590.2 CDS ID=AT4G25590.2; Parent=AT4G25590; Name=AT4G25590.2; Note=actin depolymerizing factor 7; symbol=ADF7; full_name=actin depolymerizing factor 7; computational_description=actin depolymerizing factor 7 (ADF7)%3B FUNCTIONS IN: actin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Actin-binding%2C cofilin/tropomyosin type (InterPro:IPR002108)%3B BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 10 (TAIR:AT5G52360.1)%3B Has 1500 Blast hits to 1497 proteins in 263 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 654%3B Fungi - 151%3B Plants - 513%3B Viruses - 0%3B Other Eukaryotes - 179 (source: NCBI BLink).; Dbxref=PMID:14500793, PMID:16247729, PMID:17877706, PMID:18775970, PMID:21632657, PMID:22751315, PMID:24058157, locus:2131879; locus_type=protein_coding LOCN Exon COOR C/13059137-13059287,13059388-13059629 HITS AT4G25600.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25600.1 CDS ID=AT4G25600.1; Parent=AT4G25600; Name=AT4G25600.1; Note=Oxoglutarate/iron-dependent oxygenase; conf_class=1; computational_description=Oxoglutarate/iron-dependent oxygenase%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C iron ion binding%2C L-ascorbic acid binding%3B INVOLVED IN: oxidation reduction%3B CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase%2C alpha subunit (InterPro:IPR006620)%2C Metridin-like ShK toxin (InterPro:IPR003582)%3B BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28480.1)%3B Has 1193 Blast hits to 1161 proteins in 233 species: Archae - 0%3B Bacteria - 285%3B Metazoa - 424%3B Fungi - 0%3B Plants - 372%3B Viruses - 8%3B Other Eukaryotes - 104 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16935991, locus:2131884; locus_type=protein_coding LOCN Exon COOR W/13060712-13060791,13060912-13061031,13061146-13061203,13061281-13061334,13061592-13061649,13061768-13061940,13062027-13062359 HITS AT4G25600.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25600.2 CDS ID=AT4G25600.2; Parent=AT4G25600; Name=AT4G25600.2; Note=Oxoglutarate/iron-dependent oxygenase; computational_description=Oxoglutarate/iron-dependent oxygenase%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C iron ion binding%2C L-ascorbic acid binding%3B INVOLVED IN: oxidation reduction%3B CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase%2C alpha subunit (InterPro:IPR006620)%2C Metridin-like ShK toxin (InterPro:IPR003582)%3B BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28480.1)%3B Has 1193 Blast hits to 1161 proteins in 233 species: Archae - 0%3B Bacteria - 285%3B Metazoa - 424%3B Fungi - 0%3B Plants - 372%3B Viruses - 8%3B Other Eukaryotes - 104 (source: NCBI BLink).; Dbxref=PMID:16935991, locus:2131884; locus_type=protein_coding LOCN Exon COOR W/13061020-13061036,13061119-13061203,13061281-13061334,13061592-13061649,13061768-13061940,13062027-13062359 HITS AT4G25600.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25600.3 CDS ID=AT4G25600.3; Parent=AT4G25600; Name=AT4G25600.3; Note=Oxoglutarate/iron-dependent oxygenase; computational_description=Oxoglutarate/iron-dependent oxygenase%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C iron ion binding%2C L-ascorbic acid binding%3B INVOLVED IN: oxidation reduction%3B CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase%2C alpha subunit (InterPro:IPR006620)%2C Metridin-like ShK toxin (InterPro:IPR003582)%3B BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28480.1)%3B Has 1193 Blast hits to 1161 proteins in 233 species: Archae - 0%3B Bacteria - 285%3B Metazoa - 424%3B Fungi - 0%3B Plants - 372%3B Viruses - 8%3B Other Eukaryotes - 104 (source: NCBI BLink).; Dbxref=PMID:16935991, locus:2131884; locus_type=protein_coding LOCN Exon COOR W/13061020-13061036,13061146-13061203,13061281-13061334,13061592-13061649,13061768-13061940,13062027-13062359 HITS AT4G25600.4[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25600.4 CDS ID=AT4G25600.4; Parent=AT4G25600; Name=AT4G25600.4; Note=Oxoglutarate/iron-dependent oxygenase; computational_description=Oxoglutarate/iron-dependent oxygenase%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C iron ion binding%2C L-ascorbic acid binding%3B INVOLVED IN: oxidation reduction%3B CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase%2C alpha subunit (InterPro:IPR006620)%2C Metridin-like ShK toxin (InterPro:IPR003582)%3B BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28480.1)%3B Has 1193 Blast hits to 1161 proteins in 233 species: Archae - 0%3B Bacteria - 285%3B Metazoa - 424%3B Fungi - 0%3B Plants - 372%3B Viruses - 8%3B Other Eukaryotes - 104 (source: NCBI BLink).; Dbxref=PMID:16935991, locus:2131884; locus_type=protein_coding LOCN Exon COOR W/13061138-13061203,13061281-13061334,13061592-13061649,13061768-13061940,13062027-13062359 HITS AT4G25610.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25610.1 CDS ID=AT4G25610.1; Parent=AT4G25610; Name=AT4G25610.1; Note=C2H2-like zinc finger protein; conf_class=2; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B Has 1178 Blast hits to 1100 proteins in 218 species: Archae - 0%3B Bacteria - 148%3B Metazoa - 375%3B Fungi - 111%3B Plants - 98%3B Viruses - 2%3B Other Eukaryotes - 444 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15236668, PMID:18775970, locus:2131889; locus_type=protein_coding LOCN Exon COOR W/13063801-13063945,13064168-13064295,13064402-13064446,13064533-13064586,13065064-13065168,13065270-13065473,13065597-13065682,13065774-13066588,13066682-13066860 HITS AT4G25610.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25610.2 CDS ID=AT4G25610.2; Parent=AT4G25610; Name=AT4G25610.2; Note=C2H2-like zinc finger protein; conf_class=6; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B Has 1178 Blast hits to 1100 proteins in 218 species: Archae - 0%3B Bacteria - 148%3B Metazoa - 375%3B Fungi - 111%3B Plants - 98%3B Viruses - 2%3B Other Eukaryotes - 444 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15236668, PMID:18775970, locus:2131889; locus_type=protein_coding LOCN Exon COOR W/13063801-13063945,13064168-13064295,13064402-13064446,13064533-13064586,13065064-13065168,13065270-13065473,13065597-13065682,13065774-13066588,13066693-13066763,13066819-13066827,13066917-13066970 HITS AT4G25610.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25610.3 CDS ID=AT4G25610.3; Parent=AT4G25610; Name=AT4G25610.3; Note=C2H2-like zinc finger protein; Dbxref=PMID:15236668, PMID:18775970, locus:2131889; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B Has 1178 Blast hits to 1100 proteins in 218 species: Archae - 0%3B Bacteria - 148%3B Metazoa - 375%3B Fungi - 111%3B Plants - 98%3B Viruses - 2%3B Other Eukaryotes - 444 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR W/13063801-13063945,13064168-13064295,13064402-13064446,13064533-13064586,13065064-13065168,13065270-13065473,13065597-13065682,13065774-13066588,13066682-13066860 HITS AT4G25620.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25620.1 CDS ID=AT4G25620.1; Parent=AT4G25620; Name=AT4G25620.1; Note=hydroxyproline-rich glycoprotein family protein; conf_class=2; computational_description=hydroxyproline-rich glycoprotein family protein%3B BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1)%3B Has 940 Blast hits to 722 proteins in 169 species: Archae - 0%3B Bacteria - 80%3B Metazoa - 158%3B Fungi - 130%3B Plants - 239%3B Viruses - 59%3B Other Eukaryotes - 274 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17187690, locus:2131819; locus_type=protein_coding LOCN Exon COOR C/13067447-13068700,13069201-13069296 HITS AT4G25630.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25630.1 CDS ID=AT4G25630.1; Parent=AT4G25630; Name=AT4G25630.1; Note=fibrillarin 2; curator_summary=encodes a fibrillarin%2C a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA%2C U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.; conf_class=2; symbol=FIB2; Alias=ATFIB2; full_name=fibrillarin 2; computational_description=fibrillarin 2 (FIB2)%3B FUNCTIONS IN: snoRNA binding%3B INVOLVED IN: response to salt stress%2C RNA methylation%2C rRNA processing%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692)%3B BEST Arabidopsis thaliana protein match is: fibrillarin 1 (TAIR:AT5G52470.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10829025, PMID:11351099, PMID:12753585, PMID:15356332, PMID:15695462, PMID:17560376, PMID:17675552, PMID:18322146, PMID:17666011, PMID:20736450, PMID:21785141, PMID:22021418, PMID:22349738, locus:2131386; locus_type=protein_coding LOCN Exon COOR W/13074239-13074257,13074500-13074840,13074934-13075029,13075114-13075191,13075279-13075455,13075870-13075938,13076023-13076205 HITS AT4TE61260[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE61260 transposable_element ID=AT4TE61260; Name=AT4TE61260; Alias=VANDAL1 LOCN Exon COOR C/13074535-13074724 HITS AT4G25631.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25631.1 snoRNA ID=AT4G25631.1; Parent=AT4G25631; curator_summary=Encodes a novel C/D box snoRNA (U60.2f) encoded within the 5th intron of FIB2. Gb: AF228365; symbol=U60.2F; Dbxref=PMID:22820990, locus:1009023362; Name=AT4G25631.1; Note=U60.2F%2CsnoRNA; locus_type=small_nucleolar_rna LOCN Exon COOR W/13075563-13075635 HITS AT4G25635.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25635.1 tRNA ID=AT4G25635.1; Parent=AT4G25635; Note=tRNA-Leu; computational_description=tRNA-Leu (anticodon: CAA); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:1005716305; Name=AT4G25635.1; locus_type=pre_trna LOCN Exon COOR C/13076574-13076657 HITS AT4G25640.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25640.2 CDS ID=AT4G25640.2; Parent=AT4G25640; Name=AT4G25640.2; Note=detoxifying efflux carrier 35; curator_summary=Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism%2C affecting Root growth%2C seed development and germination%2C and pollen development%2C release and viability.; conf_class=6; symbol=DTX35; Alias=ATDTX35, detoxifying efflux carrier 35, FFT, FLOWER FLAVONOID TRANSPORTER; full_name=detoxifying efflux carrier 35; computational_description=detoxifying efflux carrier 35 (DTX35)%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%3B INVOLVED IN: anther dehiscence%2C flavonoid metabolic process%2C pollen development%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G00350.1)%3B Has 11724 Blast hits to 11622 proteins in 2105 species: Archae - 230%3B Bacteria - 8860%3B Metazoa - 143%3B Fungi - 322%3B Plants - 1354%3B Viruses - 0%3B Other Eukaryotes - 815 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12481097, PMID:11152613, PMID:17601828, PMID:19995827, PMID:20505354, locus:2131401; locus_type=protein_coding LOCN Exon COOR C/13076576-13076657,13076957-13077024,13077109-13077195,13077270-13077388,13077475-13077713,13077790-13077846,13077938-13078563,13078699-13078965 HITS AT4G25640.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25640.1 CDS ID=AT4G25640.1; Parent=AT4G25640; Name=AT4G25640.1; Note=detoxifying efflux carrier 35; curator_summary=Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism%2C affecting Root growth%2C seed development and germination%2C and pollen development%2C release and viability.; conf_class=2; symbol=DTX35; Alias=ATDTX35, detoxifying efflux carrier 35, FFT, FLOWER FLAVONOID TRANSPORTER; full_name=detoxifying efflux carrier 35; computational_description=detoxifying efflux carrier 35 (DTX35)%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%3B INVOLVED IN: anther dehiscence%2C flavonoid metabolic process%2C pollen development%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G00350.1)%3B Has 11724 Blast hits to 11622 proteins in 2105 species: Archae - 230%3B Bacteria - 8860%3B Metazoa - 143%3B Fungi - 322%3B Plants - 1354%3B Viruses - 0%3B Other Eukaryotes - 815 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:11152613, PMID:17601828, PMID:19995827, PMID:20505354, locus:2131401; locus_type=protein_coding LOCN Exon COOR C/13076953-13077024,13077109-13077195,13077270-13077388,13077475-13077713,13077790-13077846,13077938-13078563,13078699-13078965 HITS AT4G25640.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25640.3 CDS ID=AT4G25640.3; Parent=AT4G25640; Name=AT4G25640.3; Note=detoxifying efflux carrier 35; symbol=DTX35; Alias=ATDTX35, detoxifying efflux carrier 35, FFT, FLOWER FLAVONOID TRANSPORTER; full_name=detoxifying efflux carrier 35; curator_summary=Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism%2C affecting Root growth%2C seed development and germination%2C and pollen development%2C release and viability.; computational_description=detoxifying efflux carrier 35 (DTX35)%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%3B INVOLVED IN: anther dehiscence%2C flavonoid metabolic process%2C pollen development%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G00350.1)%3B Has 11724 Blast hits to 11622 proteins in 2105 species: Archae - 230%3B Bacteria - 8860%3B Metazoa - 143%3B Fungi - 322%3B Plants - 1354%3B Viruses - 0%3B Other Eukaryotes - 815 (source: NCBI BLink).; Dbxref=PMID:12481097, PMID:11152613, PMID:17601828, PMID:19995827, PMID:20505354, locus:2131401; locus_type=protein_coding LOCN Exon COOR C/13077177-13077388,13077475-13077713,13077790-13077846,13077938-13078563,13078699-13078965 HITS AT4G25650.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25650.1 CDS ID=AT4G25650.1; Parent=AT4G25650; Name=AT4G25650.1; Note=ACD1-like protein; curator_summary=Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.; conf_class=2; symbol=ACD1-LIKE; Alias=PTC52, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, TIC55-IV, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV; full_name=ACD1-like; computational_description=ACD1-like (ACD1-LIKE)%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C 2 iron%2C 2 sulfur cluster binding%2C chlorophyllide a oxygenase [overall] activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941)%2C Pheophorbide a oxygenase (InterPro:IPR013626)%3B BEST Arabidopsis thaliana protein match is: Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (TAIR:AT3G44880.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14701922, PMID:14657372, PMID:15272878, PMID:15965014, PMID:18775970, PMID:19995737, locus:2131406; locus_type=protein_coding LOCN Exon COOR C/13081021-13081276,13081351-13081541,13081635-13081823,13081906-13082090,13082160-13082245,13082327-13082514,13082638-13083153 HITS AT4G25650.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25650.2 CDS ID=AT4G25650.2; Parent=AT4G25650; Name=AT4G25650.2; Note=ACD1-like protein; curator_summary=Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.; conf_class=2; symbol=ACD1-LIKE; Alias=PTC52, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, TIC55-IV, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV; full_name=ACD1-like; computational_description=ACD1-like (ACD1-LIKE)%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C 2 iron%2C 2 sulfur cluster binding%2C chlorophyllide a oxygenase [overall] activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941)%2C Pheophorbide a oxygenase (InterPro:IPR013626)%3B BEST Arabidopsis thaliana protein match is: Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (TAIR:AT3G44880.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14701922, PMID:14657372, PMID:15272878, PMID:15965014, PMID:18775970, PMID:19995737, locus:2131406; locus_type=protein_coding LOCN Exon COOR C/13081021-13081276,13081351-13081541,13081635-13081823,13081906-13082245,13082327-13082514,13082638-13083153 HITS AT4G25660.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25660.1 CDS ID=AT4G25660.1; Parent=AT4G25660; Name=AT4G25660.1; Note=PPPDE putative thiol peptidase family protein; conf_class=2; computational_description=PPPDE putative thiol peptidase family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862%2C eukaryotic (InterPro:IPR008580)%3B BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT4G25680.1)%3B Has 753 Blast hits to 753 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 205%3B Fungi - 55%3B Plants - 348%3B Viruses - 0%3B Other Eukaryotes - 145 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2131411; locus_type=protein_coding LOCN Exon COOR W/13083677-13083811,13084183-13084444,13084523-13084590,13084687-13084989 HITS AT4G25670.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25670.1 CDS ID=AT4G25670.1; Parent=AT4G25670; Name=AT4G25670.1; Note=stress response NST1-like protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15272873, PMID:17663791, PMID:18650403, PMID:18775970, locus:2131366; locus_type=protein_coding LOCN Exon COOR C/13085431-13085997 HITS AT4G25670.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25670.2 CDS ID=AT4G25670.2; Parent=AT4G25670; Name=AT4G25670.2; Note=stress response NST1-like protein; conf_class=4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15272873, PMID:17663791, PMID:18650403, PMID:18775970, locus:2131366; locus_type=protein_coding LOCN Exon COOR C/13085431-13085997 HITS AT4G25670.uORF1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25670.uORF1 uORF ID=AT4G25670.uORF1; Derives_from=AT4G25670; Name=AT4G25670.uORF1; Note=stress response NST1-like protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:15272873, PMID:17663791, PMID:18650403, PMID:18775970, locus:2131366; locus_type=protein_coding LOCN Exon COOR C/13086069-13086227 HITS AT4G25680.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25680.1 CDS ID=AT4G25680.1; Parent=AT4G25680; Name=AT4G25680.1; Note=PPPDE putative thiol peptidase family protein; conf_class=1; computational_description=PPPDE putative thiol peptidase family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862%2C eukaryotic (InterPro:IPR008580)%3B BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT4G25660.1)%3B Has 754 Blast hits to 754 proteins in 155 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 207%3B Fungi - 56%3B Plants - 348%3B Viruses - 0%3B Other Eukaryotes - 143 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, locus:2131371; locus_type=protein_coding LOCN Exon COOR W/13088425-13088559,13089158-13089419,13089509-13089576,13089659-13089952 HITS AT4G25690.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25690.1 CDS ID=AT4G25690.1; Parent=AT4G25690; Name=AT4G25690.1; Note=stress response NST1-like protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2)%3B Has 73 Blast hits to 60 proteins in 13 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4%3B Fungi - 0%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12169696, PMID:14973164, PMID:17663791, PMID:18650403, locus:2131376; locus_type=protein_coding LOCN Exon COOR C/13090421-13090996 HITS AT4G25690.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25690.2 CDS ID=AT4G25690.2; Parent=AT4G25690; Name=AT4G25690.2; Note=stress response NST1-like protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2)%3B Has 73 Blast hits to 60 proteins in 13 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4%3B Fungi - 0%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:14973164, PMID:17663791, PMID:18650403, locus:2131376; locus_type=protein_coding LOCN Exon COOR C/13090421-13090996 HITS AT4G25690.uORF1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25690.uORF1 uORF ID=AT4G25690.uORF1; Derives_from=AT4G25690; Name=AT4G25690.uORF1; Note=stress response NST1-like protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2)%3B Has 73 Blast hits to 60 proteins in 13 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4%3B Fungi - 0%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:12169696, PMID:14973164, PMID:17663791, PMID:18650403, locus:2131376; locus_type=protein_coding LOCN Exon COOR C/13091072-13091239 HITS AT4G25700.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25700.1 CDS ID=AT4G25700.1; Parent=AT4G25700; Name=AT4G25700.1; Note=beta-hydroxylase 1; curator_summary=Converts beta-carotene to zeaxanthin via cryptoxanthin.; conf_class=2; symbol=BETA-OHASE 1; Alias=B1, BCH1, BETA CAROTENOID HYDROXYLASE 1, chy1; full_name=beta-hydroxylase 1; computational_description=beta-hydroxylase 1 (BETA-OHASE 1)%3B FUNCTIONS IN: carotene beta-ring hydroxylase activity%3B INVOLVED IN: xanthophyll biosynthetic process%2C carotene metabolic process%3B LOCATED IN: endoplasmic reticulum%2C chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%3B BEST Arabidopsis thaliana protein match is: beta-carotene hydroxylase 2 (TAIR:AT5G52570.1)%3B Has 865 Blast hits to 862 proteins in 172 species: Archae - 20%3B Bacteria - 141%3B Metazoa - 0%3B Fungi - 0%3B Plants - 524%3B Viruses - 0%3B Other Eukaryotes - 180 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8798688, PMID:11587509, PMID:12782726, PMID:14709673, PMID:16492736, PMID:16890225, PMID:18650403, PMID:19147649, PMID:19936058, PMID:21388418, PMID:22513258, locus:2131381; locus_type=protein_coding LOCN Exon COOR C/13094142-13094246,13094333-13094389,13094495-13094620,13094995-13095129,13095202-13095273,13095350-13095409,13095489-13095866 HITS AT4G25700.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25700.2 CDS ID=AT4G25700.2; Parent=AT4G25700; Name=AT4G25700.2; Note=beta-hydroxylase 1; curator_summary=Converts beta-carotene to zeaxanthin via cryptoxanthin.; conf_class=2; symbol=BETA-OHASE 1; Alias=B1, BCH1, BETA CAROTENOID HYDROXYLASE 1, chy1; full_name=beta-hydroxylase 1; computational_description=beta-hydroxylase 1 (BETA-OHASE 1)%3B FUNCTIONS IN: carotene beta-ring hydroxylase activity%3B INVOLVED IN: xanthophyll biosynthetic process%2C carotene metabolic process%3B LOCATED IN: endoplasmic reticulum%2C chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%3B BEST Arabidopsis thaliana protein match is: beta-carotene hydroxylase 2 (TAIR:AT5G52570.1)%3B Has 865 Blast hits to 862 proteins in 172 species: Archae - 20%3B Bacteria - 141%3B Metazoa - 0%3B Fungi - 0%3B Plants - 524%3B Viruses - 0%3B Other Eukaryotes - 180 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8798688, PMID:11587509, PMID:12782726, PMID:14709673, PMID:16492736, PMID:16890225, PMID:18650403, PMID:19147649, PMID:19936058, PMID:21388418, PMID:22513258, locus:2131381; locus_type=protein_coding LOCN Exon COOR C/13094965-13095129,13095202-13095273,13095350-13095409,13095489-13095866 HITS AT4G25700.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25700.3 CDS ID=AT4G25700.3; Parent=AT4G25700; Name=AT4G25700.3; Note=beta-hydroxylase 1; symbol=BETA-OHASE 1; Alias=B1, BCH1, BETA CAROTENOID HYDROXYLASE 1, chy1; full_name=beta-hydroxylase 1; Dbxref=PMID:8798688, PMID:11587509, PMID:12782726, PMID:14709673, PMID:16492736, PMID:16890225, PMID:18650403, PMID:19147649, PMID:19936058, PMID:21388418, PMID:22513258, locus:2131381; curator_summary=Converts beta-carotene to zeaxanthin via cryptoxanthin.; computational_description=beta-hydroxylase 1 (BETA-OHASE 1)%3B FUNCTIONS IN: carotene beta-ring hydroxylase activity%3B INVOLVED IN: xanthophyll biosynthetic process%2C carotene metabolic process%3B LOCATED IN: endoplasmic reticulum%2C chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%3B BEST Arabidopsis thaliana protein match is: beta-carotene hydroxylase 2 (TAIR:AT5G52570.1)%3B Has 865 Blast hits to 862 proteins in 172 species: Archae - 20%3B Bacteria - 141%3B Metazoa - 0%3B Fungi - 0%3B Plants - 524%3B Viruses - 0%3B Other Eukaryotes - 180 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR C/13094965-13095129,13095202-13095273,13095350-13095409,13095489-13095866 HITS AT4TE61380[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE61380 transposable_element ID=AT4TE61380; Name=AT4TE61380; Alias=ATIS112A LOCN Exon COOR C/13097465-13097594 HITS AT4G25707.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25707.1 CDS ID=AT4G25707.1; Parent=AT4G25707; Name=AT4G25707.1; Note=splicing factor 3A subunit; curator_summary=This gene encodes a small protein and has either evidence of transcription or purifying selection.; conf_class=9; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:17395691, locus:4515103452; locus_type=protein_coding LOCN Exon COOR C/13097640-13097762 HITS AT4G25707.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25707.2 CDS ID=AT4G25707.2; Parent=AT4G25707; Name=AT4G25707.2; Note=splicing factor 3A subunit; Dbxref=PMID:17395691, locus:4515103452; curator_summary=This gene encodes a small protein and has either evidence of transcription or purifying selection.; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR C/13097640-13097762 HITS AT4G25710.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25710.1 CDS ID=AT4G25710.1; Parent=AT4G25710; Name=AT4G25710.1; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=1; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch repeat type 2 (InterPro:IPR011498)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G51250.1)%3B Has 986 Blast hits to 967 proteins in 50 species: Archae - 4%3B Bacteria - 5%3B Metazoa - 105%3B Fungi - 0%3B Plants - 870%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11516153, PMID:12753585, locus:2131396; locus_type=protein_coding LOCN Exon COOR C/13098359-13099531 HITS AT4G25710.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25710.2 CDS ID=AT4G25710.2; Parent=AT4G25710; Name=AT4G25710.2; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=4; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch repeat type 2 (InterPro:IPR011498)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G51250.1)%3B Has 986 Blast hits to 967 proteins in 50 species: Archae - 4%3B Bacteria - 5%3B Metazoa - 105%3B Fungi - 0%3B Plants - 870%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11516153, PMID:12753585, locus:2131396; locus_type=protein_coding LOCN Exon COOR C/13098625-13098644,13098721-13099531 HITS AT4G25719.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25719.1 antisense_lncRNA ID=AT4G25719.1; Parent=AT4G25719; curator_summary=Potential natural antisense gene%2C locus overlaps with AT4G25720; Dbxref=locus:4515103453; Name=AT4G25719.1; description=Natural antisense transcript overlaps with AT4G25720; Note=Natural antisense transcript overlaps with AT4G25720; locus_type=antisense_long_noncoding_rna LOCN Exon COOR W/13099788-13101017 HITS AT4G25720.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25720.1 CDS ID=AT4G25720.1; Parent=AT4G25720; Name=AT4G25720.1; Note=glutaminyl cyclase; curator_summary=This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.; conf_class=1; symbol=QC; Alias=ATQC, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, QCT, GLUTAMINYL CYCLOTRANSFERASE; full_name=glutaminyl cyclase; computational_description=glutaminyl cyclase (QC)%3B FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity%2C catalytic activity%3B INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process%2C using glutaminyl-peptide cyclotransferase%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788)%2C Nitrous oxide reductase%2C N-terminal (InterPro:IPR011045)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:17261077, PMID:18650403, PMID:18768907, PMID:20226671, locus:2131391; locus_type=protein_coding LOCN Exon COOR C/13099929-13100023,13100133-13100187,13100284-13100311,13100417-13100487,13100786-13100883,13100989-13101106,13101352-13101415,13101597-13101661,13101894-13101929,13102063-13102119,13102195-13102470 HITS AT4G25720.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25720.3 CDS ID=AT4G25720.3; Parent=AT4G25720; Name=AT4G25720.3; Note=glutaminyl cyclase; curator_summary=This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.; conf_class=3; symbol=QC; Alias=ATQC, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, QCT, GLUTAMINYL CYCLOTRANSFERASE; full_name=glutaminyl cyclase; computational_description=glutaminyl cyclase (QC)%3B FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity%2C catalytic activity%3B INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process%2C using glutaminyl-peptide cyclotransferase%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788)%2C Nitrous oxide reductase%2C N-terminal (InterPro:IPR011045)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17261077, PMID:18650403, PMID:18768907, PMID:20226671, locus:2131391; locus_type=protein_coding LOCN Exon COOR C/13099929-13100023,13100133-13100187,13100284-13100311,13100417-13100487,13100846-13100883,13100989-13101106,13101352-13101415,13101597-13101661,13101894-13101929,13102063-13102119,13102195-13102470 HITS AT4G25720.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25720.2 CDS ID=AT4G25720.2; Parent=AT4G25720; Name=AT4G25720.2; Note=glutaminyl cyclase; curator_summary=This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.; conf_class=2; symbol=QC; Alias=ATQC, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, QCT, GLUTAMINYL CYCLOTRANSFERASE; full_name=glutaminyl cyclase; computational_description=glutaminyl cyclase (QC)%3B FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity%2C catalytic activity%3B INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process%2C using glutaminyl-peptide cyclotransferase%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788)%2C Nitrous oxide reductase%2C N-terminal (InterPro:IPR011045)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17261077, PMID:18650403, PMID:18768907, PMID:20226671, locus:2131391; locus_type=protein_coding LOCN Exon COOR C/13100104-13100187,13100284-13100311,13100417-13100487,13100786-13100883,13100989-13101106,13101352-13101415,13101597-13101661,13101894-13101929,13102063-13102119,13102195-13102470 HITS AT4G25720.4[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25720.4 CDS ID=AT4G25720.4; Parent=AT4G25720; Name=AT4G25720.4; Note=glutaminyl cyclase; symbol=QC; Alias=ATQC, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, QCT, GLUTAMINYL CYCLOTRANSFERASE; full_name=glutaminyl cyclase; curator_summary=This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.; computational_description=glutaminyl cyclase (QC)%3B FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity%2C catalytic activity%3B INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process%2C using glutaminyl-peptide cyclotransferase%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788)%2C Nitrous oxide reductase%2C N-terminal (InterPro:IPR011045)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:17261077, PMID:18650403, PMID:18768907, PMID:20226671, locus:2131391; locus_type=protein_coding LOCN Exon COOR C/13100275-13100311,13100417-13100487,13100786-13100883,13100989-13101106,13101352-13101415,13101597-13101661,13101894-13101929,13102063-13102119,13102195-13102470 HITS AT4G25719.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25719.2 antisense_lncRNA ID=AT4G25719.2; Parent=AT4G25719; Name=AT4G25719.2; description=Natural antisense transcript overlaps with AT4G25720; curator_summary=Potential natural antisense gene%2C locus overlaps with AT4G25720; Note=Natural antisense transcript overlaps with AT4G25720; Dbxref=locus:4515103453; locus_type=antisense_long_noncoding_rna LOCN Exon COOR W/13100467-13100753 HITS AT4G25720.5[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25720.5 CDS ID=AT4G25720.5; Parent=AT4G25720; Name=AT4G25720.5; Note=glutaminyl cyclase; symbol=QC; Alias=ATQC, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, QCT, GLUTAMINYL CYCLOTRANSFERASE; full_name=glutaminyl cyclase; curator_summary=This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.; computational_description=glutaminyl cyclase (QC)%3B FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity%2C catalytic activity%3B INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process%2C using glutaminyl-peptide cyclotransferase%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788)%2C Nitrous oxide reductase%2C N-terminal (InterPro:IPR011045)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:17261077, PMID:18650403, PMID:18768907, PMID:20226671, locus:2131391; locus_type=protein_coding LOCN Exon COOR C/13100738-13100883,13100989-13101106,13101352-13101415,13101597-13101661,13101894-13101929,13102063-13102119,13102195-13102470 HITS AT4G25730.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25730.1 CDS ID=AT4G25730.1; Parent=AT4G25730; Name=AT4G25730.1; Note=FtsJ-like methyltransferase family protein; conf_class=1; computational_description=FtsJ-like methyltransferase family protein%3B FUNCTIONS IN: methyltransferase activity%2C nucleic acid binding%3B INVOLVED IN: methylation%2C rRNA processing%2C rRNA methylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Spb1%2C C-terminal (InterPro:IPR012920)%2C Ribosomal RNA methyltransferase J (InterPro:IPR015507)%2C Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G01230.1)%3B Has 30028 Blast hits to 21157 proteins in 1975 species: Archae - 200%3B Bacteria - 7297%3B Metazoa - 8731%3B Fungi - 3085%3B Plants - 939%3B Viruses - 236%3B Other Eukaryotes - 9540 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12169696, PMID:15695462, PMID:18650403, locus:2117487; locus_type=protein_coding LOCN Exon COOR C/13102906-13103886,13103968-13104085,13104201-13104340,13104534-13104623,13104740-13104929,13105301-13105362,13105451-13105607,13105678-13105724,13105818-13105976,13106074-13106121,13106245-13106718 HITS AT4G25740.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25740.1 CDS ID=AT4G25740.1; Parent=AT4G25740; Name=AT4G25740.1; Note=RNA binding Plectin/S10 domain-containing protein; conf_class=2; computational_description=RNA binding Plectin/S10 domain-containing protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Plectin/S10%2C N-terminal (InterPro:IPR005326)%3B BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT5G52650.1)%3B Has 2455 Blast hits to 1939 proteins in 382 species: Archae - 0%3B Bacteria - 320%3B Metazoa - 798%3B Fungi - 208%3B Plants - 219%3B Viruses - 1%3B Other Eukaryotes - 909 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:15821981, PMID:16623895, PMID:17934214, PMID:18650403, PMID:23289948, locus:2117497; locus_type=protein_coding LOCN Exon COOR C/13107488-13107568,13107723-13107843,13107926-13108205,13108590-13108638,13108749-13108751 HITS AT4G25740.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G25740.2 CDS ID=AT4G25740.2; Parent=AT4G25740; Name=AT4G25740.2; Note=RNA binding Plectin/S10 domain-containing protein; conf_class=6; computational_description=RNA binding Plectin/S10 domain-containing protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Plectin/S10%2C N-terminal (InterPro:IPR005326)%3B BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT5G52650.1)%3B Has 2455 Blast hits to 1939 proteins in 382 species: Archae - 0%3B Bacteria - 320%3B Metazoa - 798%3B Fungi - 208%3B Plants - 219%3B Viruses - 1%3B Other Eukaryotes - 909 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11598216, PMID:15821981, PMID:16623895, PMID:17934214, PMID:18650403, PMID:23289948, locus:2117497; locus_type=protein_coding LOCN Exon COOR C/13107488-13107568,13107723-13107781,13107948-13108205,13108590-13108638,13108749-13108751