CLON AGAGATCACTGCTTTGG[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr3
EVAL 100.00
COOR W/3859333-3859349
NOTE 1, +0 2 0 0 0

HITS AT3G12110.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G12110.1 CDS ID=AT3G12110.1; Parent=AT3G12110; Name=AT3G12110.1; Note=actin-11; curator_summary=Encodes an actin that is expressed predominantly during reproductive development.; conf_class=2; symbol=ACT11; full_name=actin-11; computational_description=actin-11 (ACT11)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: response to cyclopentenone%2C actin cytoskeleton organization%3B LOCATED IN: mitochondrion%2C cytoskeleton%2C plasma membrane%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1)%3B Has 15186 Blast hits to 14782 proteins in 3039 species: Archae - 6%3B Bacteria - 12%3B Metazoa - 5717%3B Fungi - 5233%3B Plants - 1598%3B Viruses - 2%3B Other Eukaryotes - 2618 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10889238, PMID:9037165, PMID:12029478, PMID:12753585, PMID:12805613, PMID:12805594, PMID:14671022, PMID:15020747, PMID:15051861, PMID:15235117, PMID:15377758, PMID:15347787, PMID:15703057, PMID:16286646, PMID:17855429, PMID:18334669, PMID:18384502, PMID:18775970, PMID:20687615, PMID:21051945, PMID:23064319, locus:2099302; locus_type=protein_coding LOCN Exon COOR W/3858116-3858175,3858288-3858681,3858837-3859450,3859544-3859609 CLON AGAGATCACTGCTTTGG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/15780947-15780963 NOTE 1, +0 2 0 0 0 HITS AT2G37620.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2G37620.1 CDS ID=AT2G37620.1; Parent=AT2G37620; Name=AT2G37620.1; Note=actin 1; curator_summary=Member of the actin gene family. Expressed in mature pollen.; conf_class=2; symbol=ACT1; Alias=AAc1, ARABIDOPSIS ACTIN 1; full_name=actin 1; computational_description=actin 1 (ACT1)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%2C root hair elongation%2C developmental growth%3B LOCATED IN: cell wall%2C cytoskeleton%2C plasma membrane%3B EXPRESSED IN: ovule%2C vascular bundle%2C male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1)%3B Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8%3B Bacteria - 15%3B Metazoa - 5741%3B Fungi - 5229%3B Plants - 1611%3B Viruses - 2%3B Other Eukaryotes - 2624 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8597657, PMID:8589735, PMID:3410320, PMID:11809837, PMID:12029478, PMID:12481103, PMID:14682614, PMID:17933902, PMID:18650403, PMID:18775970, PMID:23750279, locus:2040656; locus_type=protein_coding LOCN Exon COOR W/15779761-15779820,15779957-15780350,15780451-15781064,15781176-15781241 HITS AT2G37620.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2G37620.2 CDS ID=AT2G37620.2; Parent=AT2G37620; Name=AT2G37620.2; Note=actin 1; curator_summary=Member of the actin gene family. Expressed in mature pollen.; conf_class=2; symbol=ACT1; Alias=AAc1, ARABIDOPSIS ACTIN 1; full_name=actin 1; computational_description=actin 1 (ACT1)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%2C root hair elongation%2C developmental growth%3B LOCATED IN: cell wall%2C cytoskeleton%2C plasma membrane%3B EXPRESSED IN: ovule%2C vascular bundle%2C male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1)%3B Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8%3B Bacteria - 15%3B Metazoa - 5741%3B Fungi - 5229%3B Plants - 1611%3B Viruses - 2%3B Other Eukaryotes - 2624 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8597657, PMID:8589735, PMID:3410320, PMID:11809837, PMID:12029478, PMID:12481103, PMID:14682614, PMID:17933902, PMID:18650403, PMID:18775970, PMID:23750279, locus:2040656; locus_type=protein_coding LOCN Exon COOR W/15779761-15779820,15779957-15780350,15780451-15781064,15781176-15781241 HITS AT2G37620.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2G37620.3 CDS ID=AT2G37620.3; Parent=AT2G37620; Name=AT2G37620.3; Note=actin 1; symbol=ACT1; Alias=AAc1, ARABIDOPSIS ACTIN 1; full_name=actin 1; Dbxref=PMID:8597657, PMID:8589735, PMID:3410320, PMID:11809837, PMID:12029478, PMID:12481103, PMID:14682614, PMID:17933902, PMID:18650403, PMID:18775970, PMID:23750279, locus:2040656; curator_summary=Member of the actin gene family. Expressed in mature pollen.; computational_description=actin 1 (ACT1)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%2C root hair elongation%2C developmental growth%3B LOCATED IN: cell wall%2C cytoskeleton%2C plasma membrane%3B EXPRESSED IN: ovule%2C vascular bundle%2C male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1)%3B Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8%3B Bacteria - 15%3B Metazoa - 5741%3B Fungi - 5229%3B Plants - 1611%3B Viruses - 2%3B Other Eukaryotes - 2624 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR W/15779761-15779820,15779957-15780350,15780451-15781064,15781176-15781241 HITS AT2G37620.4[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2G37620.4 CDS ID=AT2G37620.4; Parent=AT2G37620; Name=AT2G37620.4; Note=actin 1; symbol=ACT1; Alias=AAc1, ARABIDOPSIS ACTIN 1; full_name=actin 1; Dbxref=PMID:8597657, PMID:8589735, PMID:3410320, PMID:11809837, PMID:12029478, PMID:12481103, PMID:14682614, PMID:17933902, PMID:18650403, PMID:18775970, PMID:23750279, locus:2040656; curator_summary=Member of the actin gene family. Expressed in mature pollen.; computational_description=actin 1 (ACT1)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%2C root hair elongation%2C developmental growth%3B LOCATED IN: cell wall%2C cytoskeleton%2C plasma membrane%3B EXPRESSED IN: ovule%2C vascular bundle%2C male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1)%3B Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8%3B Bacteria - 15%3B Metazoa - 5741%3B Fungi - 5229%3B Plants - 1611%3B Viruses - 2%3B Other Eukaryotes - 2624 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR W/15779761-15779820,15779957-15780350,15780451-15781064,15781176-15781241 CLON AGAGATCACTGCTTTGG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/19917095-19917111 NOTE 1, +0 2 0 0 0 HITS AT3G53750.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G53750.1 CDS ID=AT3G53750.1; Parent=AT3G53750; Name=AT3G53750.1; Note=actin 3; curator_summary=Member of the Actin gene family. Expressed in mature pollen.; conf_class=2; symbol=ACT3; full_name=actin 3; computational_description=actin 3 (ACT3)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%3B LOCATED IN: cell wall%2C cytoskeleton%2C nucleus%3B EXPRESSED IN: male gametophyte%2C seed%3B EXPRESSED DURING: M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 1 (TAIR:AT2G37620.2)%3B Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8%3B Bacteria - 15%3B Metazoa - 5741%3B Fungi - 5229%3B Plants - 1611%3B Viruses - 2%3B Other Eukaryotes - 2624 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8597657, PMID:12029478, PMID:15694452, PMID:16242667, PMID:16307367, PMID:16679420, PMID:16776300, PMID:17151888, PMID:15604690, PMID:18650403, PMID:18931021, PMID:21798377, locus:2084410; locus_type=protein_coding LOCN Exon COOR W/19915924-19915983,19916122-19916515,19916599-19917212,19917306-19917371 HITS AT3G53750.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G53750.2 CDS ID=AT3G53750.2; Parent=AT3G53750; Name=AT3G53750.2; Note=actin 3; symbol=ACT3; full_name=actin 3; Dbxref=PMID:8597657, PMID:12029478, PMID:15694452, PMID:16242667, PMID:16307367, PMID:16679420, PMID:16776300, PMID:17151888, PMID:15604690, PMID:18650403, PMID:18931021, PMID:21798377, locus:2084410; curator_summary=Member of the Actin gene family. Expressed in mature pollen.; computational_description=actin 3 (ACT3)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%3B LOCATED IN: cell wall%2C cytoskeleton%2C nucleus%3B EXPRESSED IN: male gametophyte%2C seed%3B EXPRESSED DURING: M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 1 (TAIR:AT2G37620.2)%3B Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8%3B Bacteria - 15%3B Metazoa - 5741%3B Fungi - 5229%3B Plants - 1611%3B Viruses - 2%3B Other Eukaryotes - 2624 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR W/19915924-19915983,19916122-19916515,19916599-19917212,19917306-19917371 CLON AGAGATCACTGCTTTGG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/13332015-13332031 NOTE 1, +0 2 0 0 0 HITS AT4G26360.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26360.1 CDS ID=AT4G26360.1; Parent=AT4G26360; Name=AT4G26360.1; index=1; computational_description=non-LTR retrotransposon family (LINE)%2C has a 4.9e-40 P-value blast match to GB:NP_038603 L1 repeat%2C Tf subfamily%2C member 23 (LINE-element) (Mus musculus); Dbxref=locus:2131423; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN Exon COOR C/13328763-13332375 HITS AT4TE62660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE62660 transposable_element ID=AT4TE62660; Name=AT4TE62660; Alias=ATLINE2 LOCN 1000-Promotor COOR C/13329804-13331052 HITS AT4TE62665[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE62665 transposable_element ID=AT4TE62665; Name=AT4TE62665; Alias=ATLINEIII LOCN 300-UTR5 COOR C/13331523-13332014 CLON AGAGATCACTGCTTTGG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/16261329-16261345 NOTE 1, +0 2 0 0 0 HITS AT5G40605.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G40605.1 CDS ID=AT5G40605.1; Parent=AT5G40605; Name=AT5G40605.1; index=1; computational_description=non-LTR retrotransposon family (LINE)%2C has a 1.7e-45 P-value blast match to GB:NP_038603 L1 repeat%2C Tf subfamily%2C member 23 (LINE-element) (Mus musculus); Dbxref=locus:1006230581; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN Exon COOR W/16259229-16264465 HITS AT5TE58750[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE58750 transposable_element ID=AT5TE58750; Name=AT5TE58750; Alias=ATLINEIII LOCN 300-UTR5 COOR W/16261351-16261906 HITS AT5TE58755[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE58755 transposable_element ID=AT5TE58755; Name=AT5TE58755; Alias=ATLINE2 LOCN 1000-Promotor COOR W/16262300-16263557