CLON CATGATCTTCCACA[About SAGE] 
TYPE SAGE Target
CHRO chr5
EVAL 100
COOR W/23153227-23153240

HITS AT5G57150.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G57150.1 CDS ID=AT5G57150.1; Parent=AT5G57150; Name=AT5G57150.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15078338, PMID:15659355, PMID:15531708, PMID:16553893, PMID:18775970, PMID:24377444, locus:2175599; locus_type=protein_coding LOCN Exon COOR W/23152361-23152443,23152526-23152688,23152770-23152991,23153084-23153254,23154768-23154872 HITS AT5G57150.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G57150.2 CDS ID=AT5G57150.2; Parent=AT5G57150; Name=AT5G57150.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=1; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15078338, PMID:15659355, PMID:15531708, PMID:16553893, PMID:18775970, PMID:24377444, locus:2175599; locus_type=protein_coding LOCN Exon COOR W/23152361-23152443,23152523-23152688,23152770-23152991,23153084-23153293 HITS AT5G57150.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G57150.3 CDS ID=AT5G57150.3; Parent=AT5G57150; Name=AT5G57150.3; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=1; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15078338, PMID:15659355, PMID:15531708, PMID:16553893, PMID:18775970, PMID:24377444, locus:2175599; locus_type=protein_coding LOCN Exon COOR W/23152361-23152443,23152523-23152688,23152770-23152991,23153084-23153254,23154539-23154556 HITS AT5G57150.4[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G57150.4 CDS ID=AT5G57150.4; Parent=AT5G57150; Name=AT5G57150.4; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=6; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15078338, PMID:15659355, PMID:15531708, PMID:16553893, PMID:18775970, PMID:24377444, locus:2175599; locus_type=protein_coding LOCN Exon COOR W/23152361-23152443,23152523-23152688,23152770-23152991,23153084-23153254,23154156-23154274,23154768-23154801 HITS AT5G57150.5[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G57150.5 CDS ID=AT5G57150.5; Parent=AT5G57150; Name=AT5G57150.5; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15078338, PMID:15659355, PMID:15531708, PMID:16553893, PMID:18775970, PMID:24377444, locus:2175599; locus_type=protein_coding LOCN Exon COOR W/23152361-23152443,23152526-23152688,23152770-23152991,23153084-23153254,23153535-23153564 CLON CATGATCTTCCACA[About SAGE] TYPE SAGE Target CHRO chr4 EVAL 100 COOR W/13327816-13327829 HITS AT4G26350.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26350.1 CDS ID=AT4G26350.1; Parent=AT4G26350; Name=AT4G26350.1; Note=F-box/RNI-like/FBD-like domains-containing protein; conf_class=9; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C FBD (InterPro:IPR013596)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G26340.1)%3B Has 1865 Blast hits to 1805 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 17%3B Fungi - 0%3B Plants - 1848%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:19028964, locus:2136844; locus_type=protein_coding LOCN Exon COOR W/13326853-13327719,13327799-13327933,13328022-13328315 CLON CATGATCTTCCACA[About SAGE] TYPE SAGE Target CHRO chr3 EVAL 100 COOR W/5981888-5981901 HITS AT3G17470.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G17470.2 CDS ID=AT3G17470.2; Parent=AT3G17470; Name=AT3G17470.2; Note=Ca2+-activated RelA/spot-like protein; symbol=CRSH; Alias=ATCRSH; full_name=Ca2+-activated RelA/spot homolog; computational_description=Ca2+-activated RelA/spot homolog (CRSH)%3B FUNCTIONS IN: GTP diphosphokinase activity%2C calcium ion binding%3B INVOLVED IN: guanosine tetraphosphate metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%2C RelA/SpoT (InterPro:IPR007685)%3B BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1)%3B Has 14021 Blast hits to 13962 proteins in 3173 species: Archae - 6%3B Bacteria - 8120%3B Metazoa - 1259%3B Fungi - 992%3B Plants - 727%3B Viruses - 0%3B Other Eukaryotes - 2917 (source: NCBI BLink).; Dbxref=PMID:12372144, PMID:14576160, PMID:18178586, PMID:18535838, locus:2090487; locus_type=protein_coding LOCN Exon COOR W/5979823-5980248,5980433-5981365,5981437-5981727,5981822-5981968 HITS AT3G17470.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G17470.1 CDS ID=AT3G17470.1; Parent=AT3G17470; Name=AT3G17470.1; Note=Ca2+-activated RelA/spot-like protein; conf_class=2; symbol=CRSH; Alias=ATCRSH; full_name=Ca2+-activated RelA/spot homolog; computational_description=Ca2+-activated RelA/spot homolog (CRSH)%3B FUNCTIONS IN: GTP diphosphokinase activity%2C calcium ion binding%3B INVOLVED IN: guanosine tetraphosphate metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%2C RelA/SpoT (InterPro:IPR007685)%3B BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1)%3B Has 14021 Blast hits to 13962 proteins in 3173 species: Archae - 6%3B Bacteria - 8120%3B Metazoa - 1259%3B Fungi - 992%3B Plants - 727%3B Viruses - 0%3B Other Eukaryotes - 2917 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:14576160, PMID:18178586, PMID:18535838, locus:2090487; locus_type=protein_coding LOCN Exon COOR W/5979868-5980248,5980433-5981365,5981437-5981727,5981822-5981968 HITS AT3TE25130[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE25130 transposable_element ID=AT3TE25130; Name=AT3TE25130; Alias=HELITRONY3 LOCN Exon COOR C/5981888-5981916 HITS AT3TE25135[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE25135 transposable_element ID=AT3TE25135; Name=AT3TE25135; Alias=ATREP3 LOCN 300-UTR5 COOR W/5981917-5983138