CODE AT4G26370.1 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene CHRO chr4 TITL AT4G26370.1 CDS ID=AT4G26370.1; Parent=AT4G26370; Name=AT4G26370.1; Note=antitermination NusB domain-containing protein; conf_class=2; computational_description=antitermination NusB domain-containing protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NusB/RsmB/TIM44 (InterPro:IPR006027)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, locus:2131428; locus_type=protein_coding COOR C/13334099-13334236,13334338-13334436,13334707-13334794,13334887-13334941,13335079-13335213,13335379-13335455,13335840-13336153 HITS EL232469 [GenBank] TYPE ESTs EVAL 2e-40 LOCN 300-UTR3 COOR C/13333717-13333799 HITS DR383266 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13333723-13334238,13334339-13334438 NOTE BP669726 BP793000 AV562390 EL071172 EL061674 AV439809 AV566369 EL990271 AV531045 AV789982 AV519480 ES170956 ES177258 EH852320 EL235895 EL094558 EL172460 EH946260 EL239231 AV819032 EH886534 EH811750 EL128637 EL214204 ES113709 EH969061 HITS AY089205 [GenBank] TYPE Community cDNA EVAL 99.85 LOCN Exon COOR C/13333726-13334236,13334338-13334436,13334707-13334794,13334887-13334941,13335079-13335140,13335141-13335213,13335379-13335455,13335840-13336230 HITS R15347 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.69 LOCN Exon COOR C/13333744-13334236,13334338-13334436,13334707-13334794,13334887-13334941,13335079-13335213,13335379-13335455,13335840-13336183 NOTE AY054564 HITS BX826699 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13333765-13334238,13334340-13334438,13334709-13334797,13334890-13334930,13335080-13335215,13335381-13335455,13335840-13336174 HITS BX826416 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13333775-13334438,13334709-13334792,13334885-13335215,13335381-13335455,13335839-13336175 HITS RAFL11-01-P12 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-104 LOCN Exon COOR C/13333960-13334170 HITS GATCAACACTTTGCCTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/13334012-13334028 NOTE 0 0 0 0 0 0 4 0 0 0 0 0 0 2 2 0 0 HITS U15347 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN Exon COOR C/13334099-13334236,13334338-13334436,13334707-13334794,13334887-13334941,13335079-13335213,13335379-13335455,13335840-13336153 NOTE BT008707 HITS G15347 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR C/13334099-13334236,13334338-13334436,13334707-13334794,13334887-13334941,13335079-13335213,13335379-13335455,13335840-13336153 NOTE U15347 BT008707 pENTR_Sfi HITS GATCAGCACCACGCATA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/13334189-13334205 NOTE 0 0 0 0 0 0 1 0 0 0 3 0 0 0 5 0 0 HITS 254011_at [gAtlas] TYPE Affy Probes EVAL 7e-72 LOCN Exon COOR C/13334192-13334235,13334337-13334438,13334709-13334795,13334888-13334941,13335079-13335215,13335381-13335441 HITS GATCTTGCAAAACGGTT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/13334214-13334230 NOTE 0 0 0 0 0 4 0 0 0 0 0 0 0 0 2 0 0 HITS EL135975 [GenBank] TYPE ESTs EVAL 3e-30 LOCN Exon COOR C/13334373-13334438,13334709-13334743 HITS EL005016 [GenBank] TYPE ESTs EVAL 7e-22 LOCN Exon COOR C/13334387-13334436,13334707-13334758 HITS DR352256 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13334884-13334941,13335079-13335215,13335381-13335450,13335835-13336222 NOTE ES001627 DR352249 AV832068 CB262865 EL002509 DR352253 DR352246 DR352266 DR352267 DR352252 DR352247 DR352245 DR352248 DR352250 DR352258 DR352259 DR352260 DR352264 DR352265 HITS DR352255 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13335388-13335448,13335835-13336230 NOTE DR352254 DR352257 DR352262 DR352268 BP851576 DR352251 BP818224 DR352263 BP868833 DR275787 ES085326 DR352261 ES064762 HITS ASRP204155 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 300-UTR5 COOR C/13336335-13336358 HITS ASRP90133 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR W/13336662-13336694 HITS GAGCGTTAACAGTGGTA [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN 1000-Promotor COOR C/13336671-13336687 NOTE 1, +0 0 0 16 10 HITS AACGCTCGTTAATTCGG [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN 1000-Promotor COOR W/13336681-13336697 NOTE 1, +0 3 0 0 0 HITS ASRP56667 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR C/13336689-13336712 HITS ASRP20898 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR C/13336767-13336799