CLON JAtY66O22[About JAtY] 
TYPE JAtY TAC
CHRO chr4
EVAL 0.0
COOR W/13289953-13351369

HITS AT4G26250.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26250.1 CDS ID=AT4G26250.1; Parent=AT4G26250; Name=AT4G26250.1; Note=galactinol synthase 6; curator_summary=Predicted to encode a galactinol synthase.; conf_class=1; symbol=GolS6; Alias=AtGolS6, galactinol synthase 6; full_name=galactinol synthase 6; computational_description=galactinol synthase 6 (GolS6)%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: galactinol synthase 5 (TAIR:AT5G23790.1)%3B Has 1309 Blast hits to 1308 proteins in 306 species: Archae - 0%3B Bacteria - 175%3B Metazoa - 257%3B Fungi - 268%3B Plants - 476%3B Viruses - 67%3B Other Eukaryotes - 66 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11846875, PMID:15047898, PMID:15660207, PMID:15610345, PMID:16299181, PMID:18502973, PMID:20226671, locus:2136829; locus_type=protein_coding LOCN Exon COOR W/13289641-13289973,13290215-13290538,13290619-13290753,13290835-13291053 HITS AT4G26255.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26255.1 ncRNA ID=AT4G26255.1; Parent=AT4G26255; Name=AT4G26255.1; index=1; curator_summary=Unknown gene; Dbxref=PMID:20032078, locus:4010713910; Note=other_RNA; locus_type=other_rna LOCN Exon COOR W/13293941-13296465 HITS AT4G26260.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26260.1 CDS ID=AT4G26260.1; Parent=AT4G26260; Name=AT4G26260.1; Note=myo-inositol oxygenase 4; curator_summary=Encodes a myo-inositol oxygenase.; conf_class=2; symbol=MIOX4; full_name=myo-inositol oxygenase 4; computational_description=myo-inositol oxygenase 4 (MIOX4)%3B FUNCTIONS IN: inositol oxygenase activity%3B INVOLVED IN: L-ascorbic acid biosynthetic process%2C syncytium formation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828)%3B BEST Arabidopsis thaliana protein match is: myo-inositol oxygenase 5 (TAIR:AT5G56640.1)%3B Has 490 Blast hits to 486 proteins in 159 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 132%3B Fungi - 132%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 102 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14976233, PMID:15660207, PMID:16299181, PMID:16916443, PMID:17217462, PMID:18775970, PMID:19091876, PMID:19691674, PMID:21357184, PMID:21394467, PMID:21534971, PMID:22639659, PMID:24117492, PMID:24361507, PMID:24013762, locus:2136839; locus_type=protein_coding LOCN Exon COOR W/13297939-13297969,13298157-13298298,13298448-13298529,13298662-13298866,13298974-13299033,13299124-13299176,13299342-13299464,13299575-13299644,13299742-13299820,13299914-13299995,13300120-13300146 HITS AT4G26260.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26260.2 CDS ID=AT4G26260.2; Parent=AT4G26260; Name=AT4G26260.2; Note=myo-inositol oxygenase 4; curator_summary=Encodes a myo-inositol oxygenase.; conf_class=3; symbol=MIOX4; full_name=myo-inositol oxygenase 4; computational_description=myo-inositol oxygenase 4 (MIOX4)%3B FUNCTIONS IN: inositol oxygenase activity%3B INVOLVED IN: L-ascorbic acid biosynthetic process%2C syncytium formation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828)%3B BEST Arabidopsis thaliana protein match is: myo-inositol oxygenase 5 (TAIR:AT5G56640.1)%3B Has 490 Blast hits to 486 proteins in 159 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 132%3B Fungi - 132%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 102 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14976233, PMID:15660207, PMID:16299181, PMID:16916443, PMID:17217462, PMID:18775970, PMID:19091876, PMID:19691674, PMID:21357184, PMID:21394467, PMID:21534971, PMID:22639659, PMID:24117492, PMID:24361507, PMID:24013762, locus:2136839; locus_type=protein_coding LOCN Exon COOR W/13297939-13297969,13298154-13298298,13298448-13298529,13298662-13298866,13298974-13299033,13299124-13299176,13299342-13299464,13299575-13299644,13299742-13299820,13299914-13299995,13300120-13300146 HITS AT4G26270.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26270.1 CDS ID=AT4G26270.1; Parent=AT4G26270; Name=AT4G26270.1; Note=phosphofructokinase 3; conf_class=2; symbol=PFK3; full_name=phosphofructokinase 3; computational_description=phosphofructokinase 3 (PFK3)%3B CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004)%2C Phosphofructokinase (InterPro:IPR000023)%3B BEST Arabidopsis thaliana protein match is: phosphofructokinase 7 (TAIR:AT5G56630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489341, PMID:16720694, PMID:17360592, PMID:17485088, PMID:18055584, PMID:18650403, PMID:18710526, PMID:18820081, PMID:18775970, PMID:23362208, locus:2136849; locus_type=protein_coding LOCN Exon COOR C/13301094-13301294,13301499-13301653,13301732-13301777,13301875-13302140,13302226-13302355,13302446-13302514,13302585-13302638,13302727-13302885,13302973-13303110,13303191-13303253,13303350-13303389,13303504-13303550,13303929-13304030 HITS AT4G26280.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26280.1 CDS ID=AT4G26280.1; Parent=AT4G26280; Name=AT4G26280.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=8; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: sulfotransferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: embryo%2C sepal%2C flower%2C seed%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Sulfotransferase domain (InterPro:IPR000863)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G43690.1)%3B Has 2654 Blast hits to 2620 proteins in 183 species: Archae - 0%3B Bacteria - 186%3B Metazoa - 1675%3B Fungi - 1%3B Plants - 535%3B Viruses - 0%3B Other Eukaryotes - 257 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:12805590, PMID:12777052, PMID:15234990, PMID:15489341, PMID:17189325, PMID:17915010, locus:2136854; locus_type=protein_coding LOCN Exon COOR C/13304721-13305338,13305396-13305722 HITS AT4G26290.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26290.1 CDS ID=AT4G26290.1; Parent=AT4G26290; Name=AT4G26290.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 9 Blast hits to 9 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 3%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2136784; locus_type=protein_coding LOCN Exon COOR C/13307595-13307822 HITS AT4G26288.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26288.1 CDS ID=AT4G26288.1; Parent=AT4G26288; Name=AT4G26288.1; Note=hypothetical protein; conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1)%3B Has 289 Blast hits to 232 proteins in 41 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 36%3B Fungi - 21%3B Plants - 151%3B Viruses - 2%3B Other Eukaryotes - 67 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713911; locus_type=protein_coding LOCN Exon COOR W/13307623-13307840,13307968-13308217 HITS AT4G26300.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26300.1 CDS ID=AT4G26300.1; Parent=AT4G26300; Name=AT4G26300.1; Note=Arginyl-tRNA synthetase%2C class Ic; conf_class=4; symbol=emb1027; full_name=embryo defective 1027; computational_description=embryo defective 1027 (emb1027)%3B FUNCTIONS IN: nucleotide binding%2C aminoacyl-tRNA ligase activity%2C arginine-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: arginyl-tRNA aminoacylation%2C embryo development ending in seed dormancy%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class I%2C conserved site (InterPro:IPR001412)%2C DALR anticodon binding (InterPro:IPR008909)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Arginyl-tRNA synthetase%2C class Ic%2C core (InterPro:IPR015945)%2C Arginyl tRNA synthetase%2C class Ic%2C N-terminal (InterPro:IPR005148)%2C Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (InterPro:IPR009080)%2C Arginyl-tRNA synthetase%2C class Ic (InterPro:IPR001278)%3B BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase%2C class Ic (TAIR:AT1G66530.1)%3B Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263%3B Bacteria - 5535%3B Metazoa - 273%3B Fungi - 189%3B Plants - 85%3B Viruses - 3%3B Other Eukaryotes - 3070 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11779812, PMID:15829605, PMID:16251277, PMID:16297076, PMID:16776300, PMID:18650403, PMID:18775970, locus:2136794; locus_type=protein_coding LOCN Exon COOR C/13308400-13308510,13308624-13308722,13308817-13308885,13309271-13309360,13309442-13309511,13309694-13309763,13309869-13310055,13310159-13310243,13310414-13310592,13310693-13310797,13310911-13310994,13311124-13311204,13311312-13311527,13311617-13311718,13311797-13311872,13311970-13312109,13312196-13312270,13313020-13313109 HITS AT4G26300.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26300.2 CDS ID=AT4G26300.2; Parent=AT4G26300; Name=AT4G26300.2; Note=Arginyl-tRNA synthetase%2C class Ic; symbol=emb1027; full_name=embryo defective 1027; computational_description=embryo defective 1027 (emb1027)%3B FUNCTIONS IN: nucleotide binding%2C aminoacyl-tRNA ligase activity%2C arginine-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: arginyl-tRNA aminoacylation%2C embryo development ending in seed dormancy%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class I%2C conserved site (InterPro:IPR001412)%2C DALR anticodon binding (InterPro:IPR008909)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Arginyl-tRNA synthetase%2C class Ic%2C core (InterPro:IPR015945)%2C Arginyl tRNA synthetase%2C class Ic%2C N-terminal (InterPro:IPR005148)%2C Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (InterPro:IPR009080)%2C Arginyl-tRNA synthetase%2C class Ic (InterPro:IPR001278)%3B BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase%2C class Ic (TAIR:AT1G66530.1)%3B Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263%3B Bacteria - 5535%3B Metazoa - 273%3B Fungi - 189%3B Plants - 85%3B Viruses - 3%3B Other Eukaryotes - 3070 (source: NCBI BLink).; Dbxref=PMID:11779812, PMID:15829605, PMID:16251277, PMID:16297076, PMID:16776300, PMID:18650403, PMID:18775970, locus:2136794; locus_type=protein_coding LOCN Exon COOR C/13308400-13308510,13308624-13308722,13308817-13308885,13309271-13309360,13309442-13309511,13309694-13309763,13309869-13310055,13310159-13310243,13310414-13310592,13310693-13310797,13310911-13310994,13311124-13311204,13311312-13311527,13311617-13311718,13311797-13311872,13311970-13312109,13312196-13312270,13312444-13312455 HITS AT4G26300.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26300.3 CDS ID=AT4G26300.3; Parent=AT4G26300; Name=AT4G26300.3; Note=Arginyl-tRNA synthetase%2C class Ic; symbol=emb1027; full_name=embryo defective 1027; computational_description=embryo defective 1027 (emb1027)%3B FUNCTIONS IN: nucleotide binding%2C aminoacyl-tRNA ligase activity%2C arginine-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: arginyl-tRNA aminoacylation%2C embryo development ending in seed dormancy%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class I%2C conserved site (InterPro:IPR001412)%2C DALR anticodon binding (InterPro:IPR008909)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Arginyl-tRNA synthetase%2C class Ic%2C core (InterPro:IPR015945)%2C Arginyl tRNA synthetase%2C class Ic%2C N-terminal (InterPro:IPR005148)%2C Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (InterPro:IPR009080)%2C Arginyl-tRNA synthetase%2C class Ic (InterPro:IPR001278)%3B BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase%2C class Ic (TAIR:AT1G66530.1)%3B Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263%3B Bacteria - 5535%3B Metazoa - 273%3B Fungi - 189%3B Plants - 85%3B Viruses - 3%3B Other Eukaryotes - 3070 (source: NCBI BLink).; Dbxref=PMID:11779812, PMID:15829605, PMID:16251277, PMID:16297076, PMID:16776300, PMID:18650403, PMID:18775970, locus:2136794; locus_type=protein_coding LOCN Exon COOR C/13308400-13308510,13308624-13308722,13308817-13308885,13309271-13309360,13309442-13309511,13309694-13309763,13309869-13310055,13310159-13310243,13310414-13310592,13310693-13310797,13310911-13310994,13311124-13311204,13311312-13311527,13311617-13311718,13311797-13311872,13311970-13312109,13312196-13312266,13312444-13312498 HITS AT4G26300.4[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26300.4 CDS ID=AT4G26300.4; Parent=AT4G26300; Name=AT4G26300.4; Note=Arginyl-tRNA synthetase%2C class Ic; symbol=emb1027; full_name=embryo defective 1027; computational_description=embryo defective 1027 (emb1027)%3B FUNCTIONS IN: nucleotide binding%2C aminoacyl-tRNA ligase activity%2C arginine-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: arginyl-tRNA aminoacylation%2C embryo development ending in seed dormancy%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class I%2C conserved site (InterPro:IPR001412)%2C DALR anticodon binding (InterPro:IPR008909)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Arginyl-tRNA synthetase%2C class Ic%2C core (InterPro:IPR015945)%2C Arginyl tRNA synthetase%2C class Ic%2C N-terminal (InterPro:IPR005148)%2C Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (InterPro:IPR009080)%2C Arginyl-tRNA synthetase%2C class Ic (InterPro:IPR001278)%3B BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase%2C class Ic (TAIR:AT1G66530.1)%3B Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263%3B Bacteria - 5535%3B Metazoa - 273%3B Fungi - 189%3B Plants - 85%3B Viruses - 3%3B Other Eukaryotes - 3070 (source: NCBI BLink).; Dbxref=PMID:11779812, PMID:15829605, PMID:16251277, PMID:16297076, PMID:16776300, PMID:18650403, PMID:18775970, locus:2136794; locus_type=protein_coding LOCN Exon COOR C/13308400-13308510,13308624-13308722,13308817-13308885,13309271-13309360,13309442-13309511,13309694-13309763,13309869-13310055,13310159-13310243,13310414-13310592,13310693-13310797,13310911-13310994,13311124-13311204,13311312-13311527,13311617-13311718,13311797-13311872,13311970-13312109,13312196-13312204 HITS AT4G26300.5[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26300.5 CDS ID=AT4G26300.5; Parent=AT4G26300; Name=AT4G26300.5; Note=Arginyl-tRNA synthetase%2C class Ic; symbol=emb1027; full_name=embryo defective 1027; computational_description=embryo defective 1027 (emb1027)%3B FUNCTIONS IN: nucleotide binding%2C aminoacyl-tRNA ligase activity%2C arginine-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: arginyl-tRNA aminoacylation%2C embryo development ending in seed dormancy%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class I%2C conserved site (InterPro:IPR001412)%2C DALR anticodon binding (InterPro:IPR008909)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Arginyl-tRNA synthetase%2C class Ic%2C core (InterPro:IPR015945)%2C Arginyl tRNA synthetase%2C class Ic%2C N-terminal (InterPro:IPR005148)%2C Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (InterPro:IPR009080)%2C Arginyl-tRNA synthetase%2C class Ic (InterPro:IPR001278)%3B BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase%2C class Ic (TAIR:AT1G66530.1)%3B Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263%3B Bacteria - 5535%3B Metazoa - 273%3B Fungi - 189%3B Plants - 85%3B Viruses - 3%3B Other Eukaryotes - 3070 (source: NCBI BLink).; Dbxref=PMID:11779812, PMID:15829605, PMID:16251277, PMID:16297076, PMID:16776300, PMID:18650403, PMID:18775970, locus:2136794; locus_type=protein_coding LOCN Exon COOR C/13308400-13308510,13308624-13308722,13308817-13308885,13309271-13309360,13309442-13309511,13309694-13309763,13309869-13310055,13310159-13310243,13310414-13310592,13310693-13310797,13310911-13310994,13311124-13311204,13311312-13311527,13311617-13311718,13311797-13311872,13311970-13312109,13312196-13312266,13312648-13312774 HITS AT4G26310.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26310.1 CDS ID=AT4G26310.1; Parent=AT4G26310; Name=AT4G26310.1; Note=elongation factor P (EF-P) family protein; conf_class=2; computational_description=elongation factor P (EF-P) family protein%3B FUNCTIONS IN: translation elongation factor activity%3B INVOLVED IN: translational elongation%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor P/YeiP%2C conserved site (InterPro:IPR013852)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Translation elongation factor%2C KOW-like (InterPro:IPR013185)%2C Translation protein SH3-like%2C subgroup (InterPro:IPR014722)%2C Elongation factor P%2C C-terminal (InterPro:IPR015365)%2C Translation protein SH3-like (InterPro:IPR008991)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Translation elongation factor P/YeiP%2C central (InterPro:IPR001059)%3B BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT3G08740.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, locus:2136804; locus_type=protein_coding LOCN Exon COOR C/13314006-13314018,13314116-13314183,13314309-13314348,13314526-13314649,13314838-13314905,13315015-13315081,13315234-13315303,13315420-13315470,13315563-13315576,13315665-13315695,13315836-13316066 HITS AT4G26310.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26310.2 CDS ID=AT4G26310.2; Parent=AT4G26310; Name=AT4G26310.2; Note=elongation factor P (EF-P) family protein; conf_class=6; computational_description=elongation factor P (EF-P) family protein%3B FUNCTIONS IN: translation elongation factor activity%3B INVOLVED IN: translational elongation%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor P/YeiP%2C conserved site (InterPro:IPR013852)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Translation elongation factor%2C KOW-like (InterPro:IPR013185)%2C Translation protein SH3-like%2C subgroup (InterPro:IPR014722)%2C Elongation factor P%2C C-terminal (InterPro:IPR015365)%2C Translation protein SH3-like (InterPro:IPR008991)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Translation elongation factor P/YeiP%2C central (InterPro:IPR001059)%3B BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT3G08740.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576160, locus:2136804; locus_type=protein_coding LOCN Exon COOR C/13314147-13314236,13314309-13314348,13314526-13314649,13314838-13314905,13315015-13315081,13315234-13315303,13315420-13315470,13315563-13315576,13315665-13315695,13315836-13316066 HITS AT4TE62590[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE62590 transposable_element ID=AT4TE62590; Name=AT4TE62590; Alias=ATMU3N1 LOCN Exon COOR W/13316603-13317048 HITS AT4G07565.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07565.1 miRNA_primary_transcript ID=AT4G07565.1; Parent=AT4G07565; Alias=MI0019239; Name=ath-MIR5635c; symbol=ath-MIR5635c; Note=microRNA ath-MIR5635c precursor; locus_type=mirna LOCN Exon COOR C/13316754-13316927 HITS ath-miR5635c[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL ath-miR5635c miRNA ID=ath-miR5635c; Alias=MIMAT0022428; Name=ath-miR5635c; Derives_from=AT4G07565.1; Note=microRNA ath-miR5635c; computational_description=mature miRNA accession:MIMAT0022428 LOCN Exon COOR C/13316774-13316794 HITS AT4G26320.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26320.1 CDS ID=AT4G26320.1; Parent=AT4G26320; Name=AT4G26320.1; Note=arabinogalactan protein 13; conf_class=1; symbol=AGP13; full_name=arabinogalactan protein 13; computational_description=arabinogalactan protein 13 (AGP13)%3B BEST Arabidopsis thaliana protein match is: arabinogalactan protein 14 (TAIR:AT5G56540.1)%3B Has 51 Blast hits to 51 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068095, PMID:12177459, PMID:12805588, PMID:15086809, PMID:15047898, PMID:15235117, PMID:15322080, PMID:15347784, PMID:16244449, PMID:17030626, PMID:17473866, PMID:18725200, PMID:22253603, locus:2136814; locus_type=protein_coding LOCN Exon COOR C/13317235-13317414 HITS AT4G07575.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07575.1 lnc_RNA ID=AT4G07575.1; Parent=AT4G07575; Name=AT4G07575.1; locus_type=long_noncoding_rna LOCN Exon COOR W/13318246-13318446 HITS AT4G07585.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07585.1 transcript_region ID=AT4G07585.1; Parent=AT4G07585; computational_description=novel transcribed region%3B detected in root%2C root apical meristem%2C leaf%2C dark-grown seedling%2C light-grown seedling%2C aerial; Name=AT4G07585.1; locus_type=novel_transcribed_region LOCN Exon COOR W/13318738-13319286 HITS AT4G26330.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26330.1 CDS ID=AT4G26330.1; Parent=AT4G26330; Name=AT4G26330.1; Note=Subtilisin-like serine endopeptidase family protein; conf_class=6; symbol=UNE17; Alias=ATSBT3.18; full_name=UNFERTILIZED EMBRYO SAC 17; computational_description=UNFERTILIZED EMBRYO SAC 17 (UNE17)%3B FUNCTIONS IN: identical protein binding%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C double fertilization forming a zygote and endosperm%3B LOCATED IN: peroxisome%2C cytoplasm%3B EXPRESSED IN: male gametophyte%2C leaf%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%3B BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT4G10520.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14697270, PMID:15342526, PMID:15634699, PMID:16193095, PMID:16895613, PMID:18775970, PMID:19028964, locus:2136824; locus_type=protein_coding LOCN Exon COOR W/13320408-13320543,13320730-13320895,13320939-13321647,13321752-13321819,13321957-13322205,13322306-13322420,13322582-13322795,13322878-13323461 HITS AT4G26330.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26330.2 CDS ID=AT4G26330.2; Parent=AT4G26330; Name=AT4G26330.2; Note=Subtilisin-like serine endopeptidase family protein; symbol=UNE17; Alias=ATSBT3.18; full_name=UNFERTILIZED EMBRYO SAC 17; computational_description=UNFERTILIZED EMBRYO SAC 17 (UNE17)%3B FUNCTIONS IN: identical protein binding%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C double fertilization forming a zygote and endosperm%3B LOCATED IN: peroxisome%2C cytoplasm%3B EXPRESSED IN: male gametophyte%2C leaf%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%3B BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT4G10520.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:14697270, PMID:15342526, PMID:15634699, PMID:16193095, PMID:16895613, PMID:18775970, PMID:19028964, locus:2136824; locus_type=protein_coding LOCN Exon COOR W/13320408-13320543,13320730-13320888,13320974-13321647,13321752-13321819,13321957-13322205,13322306-13322420,13322582-13322795,13322878-13323461 HITS AT4G26340.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26340.1 CDS ID=AT4G26340.1; Parent=AT4G26340; Name=AT4G26340.1; Note=F-box/RNI-like/FBD-like domains-containing protein; conf_class=1; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596)%2C F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G26350.1)%3B Has 2167 Blast hits to 2117 proteins in 47 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 45%3B Fungi - 0%3B Plants - 2120%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2136834; locus_type=protein_coding LOCN Exon COOR W/13324130-13324966,13325051-13325185,13325272-13325559 HITS AT4G26350.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26350.1 CDS ID=AT4G26350.1; Parent=AT4G26350; Name=AT4G26350.1; Note=F-box/RNI-like/FBD-like domains-containing protein; conf_class=9; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C FBD (InterPro:IPR013596)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G26340.1)%3B Has 1865 Blast hits to 1805 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 17%3B Fungi - 0%3B Plants - 1848%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:19028964, locus:2136844; locus_type=protein_coding LOCN Exon COOR W/13326853-13327719,13327799-13327933,13328022-13328315 HITS AT4G26360.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26360.1 CDS ID=AT4G26360.1; Parent=AT4G26360; Name=AT4G26360.1; index=1; computational_description=non-LTR retrotransposon family (LINE)%2C has a 4.9e-40 P-value blast match to GB:NP_038603 L1 repeat%2C Tf subfamily%2C member 23 (LINE-element) (Mus musculus); Dbxref=locus:2131423; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN Exon COOR C/13328763-13332375 HITS AT4TE62660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE62660 transposable_element ID=AT4TE62660; Name=AT4TE62660; Alias=ATLINE2 LOCN Exon COOR C/13329804-13331052 HITS AT4TE62665[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE62665 transposable_element ID=AT4TE62665; Name=AT4TE62665; Alias=ATLINEIII LOCN Exon COOR C/13331523-13332014 HITS AT4G26365.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26365.1 snoRNA ID=AT4G26365.1; Parent=AT4G26365; computational_description=snoRNA; Dbxref=PMID:22820990, locus:3705645; Name=AT4G26365.1; Note=snoRNA; locus_type=small_nucleolar_rna LOCN Exon COOR C/13332834-13332911 HITS AT4G07625.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07625.1 snoRNA ID=AT4G07625.1; Parent=AT4G07625; Name=AT4G07625.1; Alias=AtsnoR12-1b; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna LOCN Exon COOR C/13333016-13333112 HITS AT4G07635.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G07635.1 snoRNA ID=AT4G07635.1; Parent=AT4G07635; Name=AT4G07635.1; Alias=AtsnoR12-1a; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna LOCN Exon COOR C/13333203-13333285 HITS AT4G26370.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26370.1 CDS ID=AT4G26370.1; Parent=AT4G26370; Name=AT4G26370.1; Note=antitermination NusB domain-containing protein; conf_class=2; computational_description=antitermination NusB domain-containing protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NusB/RsmB/TIM44 (InterPro:IPR006027)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, locus:2131428; locus_type=protein_coding LOCN Exon COOR C/13334099-13334236,13334338-13334436,13334707-13334794,13334887-13334941,13335079-13335213,13335379-13335455,13335840-13336153 HITS AT4G26370.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26370.2 CDS ID=AT4G26370.2; Parent=AT4G26370; Name=AT4G26370.2; Note=antitermination NusB domain-containing protein; conf_class=2; computational_description=antitermination NusB domain-containing protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NusB/RsmB/TIM44 (InterPro:IPR006027)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, locus:2131428; locus_type=protein_coding LOCN Exon COOR C/13334766-13334794,13334887-13335213,13335379-13335455,13335840-13336153 HITS AT4G26370.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26370.3 CDS ID=AT4G26370.3; Parent=AT4G26370; Name=AT4G26370.3; Note=antitermination NusB domain-containing protein; Dbxref=PMID:14576160, PMID:18650403, locus:2131428; computational_description=antitermination NusB domain-containing protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NusB/RsmB/TIM44 (InterPro:IPR006027)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR C/13334766-13334794,13334887-13335213,13335379-13335455,13335840-13336153 HITS AT4G26375.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26375.1 tRNA ID=AT4G26375.1; Parent=AT4G26375; Note=tRNA-Ile; computational_description=tRNA-Ile (anticodon: AAT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:1005716243; Name=AT4G26375.1; locus_type=pre_trna LOCN Exon COOR C/13336337-13336410 HITS AT4TE62680[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE62680 transposable_element ID=AT4TE62680; Name=AT4TE62680; Alias=ATMU1 LOCN Exon COOR C/13336625-13336839 HITS AT4G26380.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26380.1 CDS ID=AT4G26380.1; Parent=AT4G26380; Name=AT4G26380.1; Note=Cysteine/Histidine-rich C1 domain family protein; conf_class=8; computational_description=Cysteine/Histidine-rich C1 domain family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: intracellular signaling pathway%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: stem%2C root%3B CONTAINS InterPro DOMAIN/s: Protein kinase C-like%2C phorbol ester/diacylglycerol binding (InterPro:IPR002219)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C DC1 (InterPro:IPR004146)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C C1-like (InterPro:IPR011424)%3B BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G03360.1)%3B Has 1810 Blast hits to 735 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 50%3B Fungi - 8%3B Plants - 1725%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2131438; locus_type=protein_coding LOCN Exon COOR W/13338078-13341034,13341467-13341560 HITS AT4G26385.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26385.1 tRNA ID=AT4G26385.1; Parent=AT4G26385; Note=tRNA-Ile; computational_description=tRNA-Ile (anticodon: AAT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:1005716242; Name=AT4G26385.1; locus_type=pre_trna LOCN Exon COOR C/13341493-13341566 HITS AT4G26390.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26390.1 CDS ID=AT4G26390.1; Parent=AT4G26390; Name=AT4G26390.1; Note=Pyruvate kinase family protein; conf_class=1; computational_description=Pyruvate kinase family protein%3B FUNCTIONS IN: pyruvate kinase activity%2C potassium ion binding%2C magnesium ion binding%2C catalytic activity%3B INVOLVED IN: glycolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: leaf whorl%2C sperm cell%2C flower%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Pyruvate kinase%2C C-terminal-like (InterPro:IPR015795)%2C Pyruvate kinase%2C active site (InterPro:IPR018209)%2C Pyruvate kinase%2C beta-barrel-like (InterPro:IPR011037)%2C Pyruvate kinase%2C alpha/beta (InterPro:IPR015794)%2C Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core (InterPro:IPR015813)%2C Pyruvate kinase (InterPro:IPR001697)%2C Pyruvate kinase%2C barrel (InterPro:IPR015793)%3B BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT5G56350.1)%3B Has 10229 Blast hits to 10134 proteins in 2721 species: Archae - 168%3B Bacteria - 6082%3B Metazoa - 550%3B Fungi - 222%3B Plants - 538%3B Viruses - 0%3B Other Eukaryotes - 2669 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17557808, PMID:18667720, locus:2131453; locus_type=protein_coding LOCN Exon COOR W/13342207-13342425,13343057-13343518,13343606-13344418 HITS AT4G26400.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26400.1 CDS ID=AT4G26400.1; Parent=AT4G26400; Name=AT4G26400.1; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to chitin%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1)%3B Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2695%3B Fungi - 997%3B Plants - 5209%3B Viruses - 70%3B Other Eukaryotes - 1489 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:12566592, PMID:15181213, PMID:16258011, PMID:17722694, PMID:18775970, locus:2131463; locus_type=protein_coding LOCN Exon COOR C/13344953-13346023 HITS AT4G26400.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26400.2 CDS ID=AT4G26400.2; Parent=AT4G26400; Name=AT4G26400.2; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to chitin%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1)%3B Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2695%3B Fungi - 997%3B Plants - 5209%3B Viruses - 70%3B Other Eukaryotes - 1489 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:12566592, PMID:15181213, PMID:16258011, PMID:17722694, PMID:18775970, locus:2131463; locus_type=protein_coding LOCN Exon COOR C/13344953-13346023 HITS AT4G26410.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26410.1 CDS ID=AT4G26410.1; Parent=AT4G26410; Name=AT4G26410.1; Note=chromosome-associated kinesin; conf_class=2; computational_description=Uncharacterised conserved protein UCP022280%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022280 (InterPro:IPR016803)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP022280 (TAIR:AT2G45060.1)%3B Has 79 Blast hits to 79 proteins in 22 species: Archae - 3%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 72%3B Viruses - 1%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16166256, PMID:17038189, PMID:18156133, PMID:18805991, PMID:18775970, PMID:25345678, locus:2131473; locus_type=protein_coding LOCN Exon COOR W/13346760-13347002,13347495-13347561,13347778-13347855,13347988-13348040,13348153-13348289,13348377-13348441,13348557-13348615,13348702-13348791 HITS AT4G26415.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26415.1 CDS ID=AT4G26415.1; Parent=AT4G26415; Name=AT4G26415.1; Note=hypothetical protein; locus_type=protein_coding LOCN Exon COOR C/13349138-13349627,13350019-13350392 HITS AT4G26420.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26420.1 CDS ID=AT4G26420.1; Parent=AT4G26420; Name=AT4G26420.1; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; curator_summary=A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1%2C a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs%2C resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.; conf_class=1; symbol=GAMT1; computational_description=GAMT1%3B CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299)%3B BEST Arabidopsis thaliana protein match is: gibberellic acid methyltransferase 2 (TAIR:AT5G56300.1)%3B Has 916 Blast hits to 905 proteins in 122 species: Archae - 0%3B Bacteria - 67%3B Metazoa - 9%3B Fungi - 3%3B Plants - 723%3B Viruses - 0%3B Other Eukaryotes - 114 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14617060, PMID:15565108, PMID:17220201, PMID:18590820, PMID:20118269, PMID:23668385, locus:2131483; locus_type=protein_coding LOCN Exon COOR C/13350895-13351254,13351343-13351630,13352005-13352487 HITS AT4G26420.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26420.2 CDS ID=AT4G26420.2; Parent=AT4G26420; Name=AT4G26420.2; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; curator_summary=A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1%2C a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs%2C resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.; conf_class=2; symbol=GAMT1; computational_description=GAMT1%3B CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299)%3B BEST Arabidopsis thaliana protein match is: gibberellic acid methyltransferase 2 (TAIR:AT5G56300.1)%3B Has 916 Blast hits to 905 proteins in 122 species: Archae - 0%3B Bacteria - 67%3B Metazoa - 9%3B Fungi - 3%3B Plants - 723%3B Viruses - 0%3B Other Eukaryotes - 114 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14617060, PMID:15565108, PMID:17220201, PMID:18590820, PMID:20118269, PMID:23668385, locus:2131483; locus_type=protein_coding LOCN Exon COOR C/13351202-13351264,13351343-13351630,13352005-13352451 HITS AT4G26420.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G26420.3 CDS ID=AT4G26420.3; Parent=AT4G26420; Name=AT4G26420.3; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; symbol=GAMT1; curator_summary=A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1%2C a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs%2C resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.; computational_description=GAMT1%3B CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299)%3B BEST Arabidopsis thaliana protein match is: gibberellic acid methyltransferase 2 (TAIR:AT5G56300.1)%3B Has 916 Blast hits to 905 proteins in 122 species: Archae - 0%3B Bacteria - 67%3B Metazoa - 9%3B Fungi - 3%3B Plants - 723%3B Viruses - 0%3B Other Eukaryotes - 114 (source: NCBI BLink).; Dbxref=PMID:14617060, PMID:15565108, PMID:17220201, PMID:18590820, PMID:20118269, PMID:23668385, locus:2131483; locus_type=protein_coding LOCN Exon COOR C/13351337-13351630,13352005-13352487