CLON GATCATGATGATGATAA[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr1
EVAL 100.00
COOR C/11943-11959
NOTE 77 13 32 61 24 0 8 0 12 8 2 0 0 3 0 0 0

HITS AT1G01030.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01030.1 CDS ID=AT1G01030.1; Parent=AT1G01030; Name=AT1G01030.1; Note=AP2/B3-like transcriptional factor family protein; conf_class=2; symbol=NGA3; full_name=NGATHA3; computational_description=NGATHA3 (NGA3)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1)%3B Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1380%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15010618, PMID:16603651, PMID:16709272, PMID:16944199, PMID:18650403, PMID:19324928, PMID:19435937, PMID:20736450, PMID:22995285, PMID:24377444, PMID:25625546, locus:2200950; locus_type=protein_coding LOCN Exon COOR C/11864-12940 HITS AT1G01030.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01030.2 CDS ID=AT1G01030.2; Parent=AT1G01030; Name=AT1G01030.2; Note=AP2/B3-like transcriptional factor family protein; symbol=NGA3; full_name=NGATHA3; computational_description=NGATHA3 (NGA3)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1)%3B Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1380%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15010618, PMID:16603651, PMID:16709272, PMID:16944199, PMID:18650403, PMID:19324928, PMID:19435937, PMID:20736450, PMID:22995285, PMID:24377444, PMID:25625546, locus:2200950; locus_type=protein_coding LOCN Exon COOR C/11864-12354,12424-12940 HITS AT1TE00010[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE00010 transposable_element ID=AT1TE00010; Name=AT1TE00010; Alias=ATCOPIA24 LOCN Exon COOR W/11897-11976 CLON GATCATGATGATGATAA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr1 EVAL 100.00 COOR W/25860195-25860211 NOTE 77 13 32 61 24 0 8 0 12 8 2 0 0 3 0 0 0 HITS AT1TE84750[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE84750 transposable_element ID=AT1TE84750; Name=AT1TE84750; Alias=HELITRONY3 LOCN 300-UTR3 COOR C/25860277-25860444 CLON GATCATGATGATGATAA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr3 EVAL 100.00 COOR C/3984655-3984671 NOTE 77 13 32 61 24 0 8 0 12 8 2 0 0 3 0 0 0 HITS AT3G12560.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G12560.1 CDS ID=AT3G12560.1; Parent=AT3G12560; Name=AT3G12560.1; Note=TRF-like 9; curator_summary=Encodes a telomeric DNA-binding protein.; conf_class=1; symbol=TRFL9; Alias=ATTBP2, TELOMERIC DNA-BINDING PROTEIN 2; full_name=TRF-like 9; computational_description=TRF-like 9 (TRFL9)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: telomeric DNA binding protein 1 (TAIR:AT5G13820.1)%3B Has 334 Blast hits to 327 proteins in 39 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 6%3B Plants - 306%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15364931, PMID:15688221, PMID:16463103, PMID:17272298, PMID:18650403, PMID:18775970, locus:2101232; locus_type=protein_coding LOCN Exon COOR C/3982272-3982475,3982562-3982625,3982720-3983025,3983135-3983370,3983473-3983552,3983716-3983889,3983981-3984695,3984768-3984848 HITS AT3G12560.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G12560.2 CDS ID=AT3G12560.2; Parent=AT3G12560; Name=AT3G12560.2; Note=TRF-like 9; symbol=TRFL9; Alias=ATTBP2, TELOMERIC DNA-BINDING PROTEIN 2; full_name=TRF-like 9; Dbxref=PMID:15364931, PMID:15688221, PMID:16463103, PMID:17272298, PMID:18650403, PMID:18775970, locus:2101232; curator_summary=Encodes a telomeric DNA-binding protein.; computational_description=TRF-like 9 (TRFL9)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: telomeric DNA binding protein 1 (TAIR:AT5G13820.1)%3B Has 334 Blast hits to 327 proteins in 39 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 6%3B Plants - 306%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; locus_type=protein_coding LOCN Exon COOR C/3982272-3982475,3982562-3982625,3982720-3983025,3983135-3983370,3983473-3983552,3983716-3983889,3983981-3984695,3984768-3984848 CLON GATCATGATGATGATAA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr3 EVAL 100.00 COOR W/21548919-21548935 NOTE 77 13 32 61 24 0 8 0 12 8 2 0 0 3 0 0 0 HITS AT3G58190.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G58190.1 CDS ID=AT3G58190.1; Parent=AT3G58190; Name=AT3G58190.1; Note=lateral organ boundaries-domain 29; curator_summary=This gene contains two auxin-responsive element (AuxRE).; conf_class=1; symbol=LBD29; Alias=ASL16, ASYMMETRIC LEAVES 2-LIKE 16; full_name=lateral organ boundaries-domain 29; computational_description=lateral organ boundaries-domain 29 (LBD29)%3B CONTAINS InterPro DOMAIN/s: Lateral organ boundaries%2C LOB (InterPro:IPR004883)%3B BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT2G42440.1)%3B Has 858 Blast hits to 853 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 858%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068116, PMID:12040093, PMID:14576160, PMID:14648238, PMID:15086809, PMID:12893885, PMID:17259263, PMID:19154202, PMID:20230485, PMID:22334497, PMID:22508267, PMID:22699776, PMID:23396830, PMID:24362628, PMID:24642937, locus:2085420; locus_type=protein_coding LOCN Exon COOR C/21548716-21549081,21549198-21549488 CLON GATCATGATGATGATAA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr5 EVAL 100.00 COOR C/17185695-17185711 NOTE 77 13 32 61 24 0 8 0 12 8 2 0 0 3 0 0 0 HITS AT5G42860.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G42860.1 CDS ID=AT5G42860.1; Parent=AT5G42860; Name=AT5G42860.1; Note=late embryogenesis abundant protein%2C group 2; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45688.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14651343, PMID:18650403, locus:2160026; locus_type=protein_coding LOCN 1000-Promotor COOR C/17183339-17183689,17184164-17184349,17184432-17184857 HITS AT5G42870.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G42870.1 CDS ID=AT5G42870.1; Parent=AT5G42870; Name=AT5G42870.1; Note=phosphatidic acid phosphohydrolase 2; curator_summary=The PAH2 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway%2C and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions%2C but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 %26#956%3BM Pi.; conf_class=2; symbol=PAH2; Alias=ATPAH2, PHOSPHATIDIC ACID PHOSPHOHYDROLASE 2; full_name=phosphatidic acid phosphohydrolase 2; computational_description=phosphatidic acid phosphohydrolase 2 (PAH2)%3B FUNCTIONS IN: phosphatidate phosphatase activity%3B INVOLVED IN: cellular response to phosphate starvation%2C lipid metabolic process%3B LOCATED IN: apoplast%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: LNS2%2C Lipin/Ned1/Smp2 (InterPro:IPR013209)%2C Lipin%2C N-terminal conserved region (InterPro:IPR007651)%3B BEST Arabidopsis thaliana protein match is: Lipin family protein (TAIR:AT3G09560.3)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16367961, PMID:19923426, PMID:20699392, PMID:20699389, PMID:21205207, PMID:21406976, PMID:23505340, PMID:23839867, PMID:24684726, PMID:25268378, locus:2160036; locus_type=protein_coding LOCN 300-UTR3 COOR C/17185719-17185772,17185848-17185946,17186222-17186350,17186436-17186479,17186575-17186647,17186728-17186814,17186926-17187010,17187128-17187201,17187282-17187811,17187941-17188631,17188755-17189681 HITS AT5G42870.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G42870.2 CDS ID=AT5G42870.2; Parent=AT5G42870; Name=AT5G42870.2; Note=phosphatidic acid phosphohydrolase 2; curator_summary=The PAH2 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway%2C and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions%2C but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 %26#956%3BM Pi.; conf_class=2; symbol=PAH2; Alias=ATPAH2, PHOSPHATIDIC ACID PHOSPHOHYDROLASE 2; full_name=phosphatidic acid phosphohydrolase 2; computational_description=phosphatidic acid phosphohydrolase 2 (PAH2)%3B FUNCTIONS IN: phosphatidate phosphatase activity%3B INVOLVED IN: cellular response to phosphate starvation%2C lipid metabolic process%3B LOCATED IN: apoplast%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: LNS2%2C Lipin/Ned1/Smp2 (InterPro:IPR013209)%2C Lipin%2C N-terminal conserved region (InterPro:IPR007651)%3B BEST Arabidopsis thaliana protein match is: Lipin family protein (TAIR:AT3G09560.3)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16367961, PMID:19923426, PMID:20699392, PMID:20699389, PMID:21205207, PMID:21406976, PMID:23505340, PMID:23839867, PMID:24684726, PMID:25268378, locus:2160036; locus_type=protein_coding LOCN 300-UTR3 COOR C/17185719-17185772,17185848-17185946,17186222-17186350,17186436-17186479,17186575-17186647,17186728-17186814,17186926-17187010,17187128-17187201,17187297-17187811,17187941-17188631,17188755-17189681