CLON GATCATAACAGCGTAGC[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr5
EVAL 100.00
COOR W/19328680-19328696
NOTE 2 5 15 28 9 7 19 3 7 23 14 0 56 32 231 42 6

HITS AT5G47700.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G47700.1 CDS ID=AT5G47700.1; Parent=AT5G47700; Name=AT5G47700.1; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT4G00810.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:17934214, PMID:18433157, PMID:18650403, PMID:22195043, locus:2160862; locus_type=protein_coding LOCN Exon COOR C/19328019-19328072,19328164-19328379,19328653-19328724 HITS AT5G47700.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G47700.2 CDS ID=AT5G47700.2; Parent=AT5G47700; Name=AT5G47700.2; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT4G00810.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:17934214, PMID:18433157, PMID:18650403, PMID:22195043, locus:2160862; locus_type=protein_coding LOCN Exon COOR C/19328019-19328072,19328164-19328379,19328653-19328724 HITS AT5TE69550[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE69550 transposable_element ID=AT5TE69550; Name=AT5TE69550; Alias=BOMZH1 LOCN 1000-Promotor COOR W/19329081-19329193 CLON GATCATAACAGCGTAGC[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr4 EVAL 100.00 COOR W/346913-346929 NOTE 2 5 15 28 9 7 19 3 7 23 14 0 56 32 231 42 6 HITS AT4G00810.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G00810.1 CDS ID=AT4G00810.1; Parent=AT4G00810; Name=AT4G00810.1; Note=60S acidic ribosomal protein family; conf_class=3; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2192 Blast hits to 2192 proteins in 389 species: Archae - 91%3B Bacteria - 0%3B Metazoa - 852%3B Fungi - 488%3B Plants - 457%3B Viruses - 0%3B Other Eukaryotes - 304 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:15310832, PMID:17934214, PMID:18433157, PMID:18650403, PMID:18775970, PMID:20736450, PMID:22195043, locus:2134608; locus_type=protein_coding LOCN Exon COOR C/346179-346232,346325-346540,346886-346957 HITS AT4G00810.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G00810.2 CDS ID=AT4G00810.2; Parent=AT4G00810; Name=AT4G00810.2; Note=60S acidic ribosomal protein family; conf_class=3; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2192 Blast hits to 2192 proteins in 389 species: Archae - 91%3B Bacteria - 0%3B Metazoa - 852%3B Fungi - 488%3B Plants - 457%3B Viruses - 0%3B Other Eukaryotes - 304 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:15310832, PMID:17934214, PMID:18433157, PMID:18650403, PMID:18775970, PMID:20736450, PMID:22195043, locus:2134608; locus_type=protein_coding LOCN Exon COOR C/346179-346232,346325-346540,346886-346957 HITS AT4TE01820[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE01820 transposable_element ID=AT4TE01820; Name=AT4TE01820; Alias=HELITRONY3 LOCN 1000-Promotor COOR W/347501-347601 HITS AT4TE01825[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE01825 transposable_element ID=AT4TE01825; Name=AT4TE01825; Alias=ATREP3 LOCN 1000-Promotor COOR W/347602-349008 CLON GATCATAACAGCGTAGC[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr1 EVAL 100.00 COOR W/50910-50926 NOTE 2 5 15 28 9 7 19 3 7 23 14 0 56 32 231 42 6 HITS AT1G01100.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01100.1 CDS ID=AT1G01100.1; Parent=AT1G01100; Name=AT1G01100.1; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76%3B Bacteria - 0%3B Metazoa - 858%3B Fungi - 474%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12093376, PMID:14730065, PMID:15010618, PMID:15734919, PMID:15703057, PMID:17934214, PMID:18433157, PMID:18775970, PMID:22195043, locus:2200985; locus_type=protein_coding LOCN Exon COOR C/50284-50337,50419-50631,50883-50954 HITS AT1G01100.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01100.2 CDS ID=AT1G01100.2; Parent=AT1G01100; Name=AT1G01100.2; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76%3B Bacteria - 0%3B Metazoa - 858%3B Fungi - 474%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12093376, PMID:14730065, PMID:15010618, PMID:15734919, PMID:15703057, PMID:17934214, PMID:18433157, PMID:18775970, PMID:22195043, locus:2200985; locus_type=protein_coding LOCN Exon COOR C/50284-50337,50419-50631,50883-50954 HITS AT1G01100.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01100.3 CDS ID=AT1G01100.3; Parent=AT1G01100; Name=AT1G01100.3; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76%3B Bacteria - 0%3B Metazoa - 858%3B Fungi - 474%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12093376, PMID:14730065, PMID:15010618, PMID:15734919, PMID:15703057, PMID:17934214, PMID:18433157, PMID:18775970, PMID:22195043, locus:2200985; locus_type=protein_coding LOCN Exon COOR C/50284-50337,50419-50447,50496-50631,50883-50954 HITS AT1G01100.4[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01100.4 CDS ID=AT1G01100.4; Parent=AT1G01100; Name=AT1G01100.4; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76%3B Bacteria - 0%3B Metazoa - 858%3B Fungi - 474%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12093376, PMID:14730065, PMID:15010618, PMID:15734919, PMID:15703057, PMID:17934214, PMID:18433157, PMID:18775970, PMID:22195043, locus:2200985; locus_type=protein_coding LOCN Exon COOR C/50284-50337,50419-50631,50883-50954