CODE AT1G01060.3 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene CHRO chr1 TITL AT1G01060.3 CDS ID=AT1G01060.3; Parent=AT1G01060; Name=AT1G01060.3; Note=Homeodomain-like superfamily protein; curator_summary=LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; conf_class=2; symbol=LHY; Alias=LHY1, LATE ELONGATED HYPOCOTYL 1; full_name=LATE ELONGATED HYPOCOTYL; computational_description=LATE ELONGATED HYPOCOTYL (LHY)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1)%3B Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2%3B Bacteria - 257%3B Metazoa - 292%3B Fungi - 162%3B Plants - 1048%3B Viruses - 29%3B Other Eukaryotes - 679 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10645431, PMID:10535927, PMID:10477524, PMID:10469647, PMID:10097183, PMID:10023572, PMID:9657154, PMID:9657153, PMID:11118137, PMID:11158533, PMID:11486091, PMID:11402160, PMID:12015970, PMID:12007421, PMID:12068102, PMID:12096093, PMID:11828023, PMID:12198185, PMID:12461138, PMID:12509533, PMID:12574129, PMID:12668783, PMID:12777053, PMID:14563930, PMID:14558659, PMID:14523250, PMID:14634162, PMID:14741378, PMID:15310821, PMID:15649364, PMID:15734916, PMID:15767265, PMID:15923346, PMID:16006578, PMID:16212608, PMID:16463103, PMID:16524874, PMID:16617099, PMID:17132630, PMID:17122071, PMID:17098855, PMID:17363273, PMID:17468223, PMID:17519251, PMID:17504813, PMID:17496120, PMID:17483414, PMID:17587236, PMID:17540692, PMID:17616736, PMID:17877705, PMID:17982000, PMID:18182014, PMID:18178585, PMID:18281507, PMID:18281417, PMID:18480377, PMID:18650403, PMID:18707796, PMID:18676661, PMID:19011118, PMID:19098071, PMID:19095940, PMID:19060255, PMID:19218364, PMID:19297549, PMID:19286557, PMID:19339503, PMID:19542296, PMID:15725674, PMID:15988568, PMID:16729048, PMID:16709197, PMID:17102804, PMID:18460819, PMID:19029881, PMID:19140936, PMID:19383102, PMID:19380736, PMID:19624471, PMID:19843842, PMID:19820331, PMID:19805390, PMID:19789276, PMID:20154425, PMID:20119844, PMID:20335405, PMID:20233950, PMID:20354196, PMID:20439704, PMID:20433765, PMID:20599732, PMID:20736450, PMID:21098730, PMID:21183706, PMID:21139085, PMID:21205033, PMID:21196476, PMID:21236675, PMID:21331777, PMID:21296763, PMID:21447790, PMID:21454289, PMID:21499259, PMID:21483796, PMID:21471455, PMID:21848684, PMID:21822060, PMID:21884973, PMID:21884969, PMID:22353866, PMID:22315425, PMID:22311777, PMID:22408072, PMID:22395476, PMID:22715042, PMID:22672153, PMID:22899064, PMID:22878891, PMID:23006446, PMID:22995285, PMID:23107921, PMID:23144785, PMID:23128602, PMID:23307650, PMID:23511208, PMID:23555221, PMID:23645632, PMID:23777196, PMID:23754942, PMID:23506153, PMID:23933882, PMID:23830866, PMID:24377444, PMID:24484962, PMID:24792048, PMID:25264899, locus:2200970; locus_type=protein_coding COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS BP781603 [GenBank] TYPE ESTs EVAL e-118 LOCN Exon COOR W/33379-33597,33989-34180 NOTE BP782731 BP790455 AV793100 BP787483 AV518592 HITS RAFL07-43-F02 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.10 LOCN Exon COOR C/33379-33589,33981-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37111 HITS AV439916 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33730-34254 NOTE BP604428 BP611805 AV786398 AV792580 AV805408 AV809310 AV816640 BP783401 EH965397 BP785164 HITS AV519732 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33736-34312 NOTE AV794517 AA650979 EH922478 BP793781 AV519727 HITS AJ006404 [GenBank] TYPE Community cDNA EVAL 97.86 LOCN Exon COOR C/33741-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37398,37569-37685 HITS AV782430 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33743-34329 NOTE EH897895 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/33743-33968,33979-34329,34403-34533 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.38 LOCN Exon COOR C/33743-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37779 HITS EG520849 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33745-34330 NOTE EG520850 EH853476 AV807028 AV793959 HITS BX836221 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 NOTE AV519209 HITS BX836221 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 HITS BX835664 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 NOTE EL285160 EL206414 CF773267 EH957137 AI993521 AA713203 HITS BX835664 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 HITS BX817115 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/33923-34326,34400-35474,35567-35647,35730-35963,36626-36685,36810-36920,37022-37204,37374-37395,37567-37828 HITS DR750341 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33992-34326,34400-34979 NOTE EL310869 R30439 GH718137 DR750570 EL098580 EL221576 EL071273 EL201800 EH906782 GH718138 EH968369 HITS AY519507 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS PYAt1g01060 [Seq] [About Peking Yale TF] [Order from ABRC] (ORF amplified by RT-PCR and cloned into the Gateway( TM) system; 5' and 3' end sequencing has been performed on this clone.) TYPE PY TF EVAL 0.0 LOCN Exon COOR C/33995-34326,34400-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 HITS GATCGGTGTTGGAACAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34141-34157 NOTE 0 47 0 0 0 15 0 0 115 11 0 0 0 105 1 0 18 HITS 261569_at [gAtlas] TYPE Affy Probes EVAL e-146 LOCN Exon COOR C/34174-34326,34400-34660 HITS AV442073 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34686-35172 HITS DR262753 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34740-35469 NOTE AV525957 DR262755 EL125752 EL269840 EL187904 HITS GATCAAAACTTGGCTTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34762-34778 NOTE 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 HITS GATCTTGCAGAGCTGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/34775-34791 NOTE 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 HITS DR750340 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35110-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 NOTE DR750333 DR262752 DR262754 DR262751 DN604658 EL069143 EH900352 EH808438 HITS BX839544 [GenBank] [Order] TYPE GSLT cDNA EVAL e-140 LOCN Exon COOR C/35776-35908,36624-36685,36809-36920,37022-37204,37374-37396,37567-37826 HITS BX840279 [GenBank] TYPE ESTs EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37567-37757 HITS BX840279 [GenBank] [Order] TYPE GSLT cDNA EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37374-37396,37567-37757 HITS EG465569 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35859-35965,36626-36685,36810-36920,37022-37203,37373-37779 NOTE EG517068 EG517069 EH811528 HITS BX839544 [GenBank] TYPE ESTs EVAL e-140 LOCN Exon COOR C/36624-36685,36809-36920,37022-37204,37567-37826 NOTE AV528276 AV821864 EL210103 ES162100 EL011803 HITS GATCTCCCCAAACATGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/37135-37151 NOTE 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 HITS GATCTCTGTTTGGCTGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/37501-37517 NOTE 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0