CODE AT1G01040.1 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene CHRO chr1 TITL AT1G01040.1 CDS ID=AT1G01040.1; Parent=AT1G01040; Name=AT1G01040.1; Note=dicer-like 1; curator_summary=Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state%2C others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.; conf_class=2; symbol=DCL1; Alias=ASU1, ABNORMAL SUSPENSOR 1, ATDCL1, DICER-LIKE 1, CAF, CARPEL FACTORY, EMB60, EMBRYO DEFECTIVE 60, EMB76, EMBRYO DEFECTIVE 76, SIN1, SHORT INTEGUMENTS 1, SUS1, SUSPENSOR 1; full_name=dicer-like 1; computational_description=dicer-like 1 (DCL1)%3B CONTAINS InterPro DOMAIN/s: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit (InterPro:IPR006935)%2C Double-stranded RNA-binding (InterPro:IPR001159)%2C Argonaute/Dicer protein%2C PAZ (InterPro:IPR003100)%2C Ribonuclease III (InterPro:IPR000999)%2C Double-stranded RNA-binding-like (InterPro:IPR014720)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C Dicer double-stranded RNA-binding fold (InterPro:IPR005034)%3B BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2)%3B Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328%3B Bacteria - 11461%3B Metazoa - 3615%3B Fungi - 1668%3B Plants - 1373%3B Viruses - 45%3B Other Eukaryotes - 3468 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10556049, PMID:8948599, PMID:8787738, PMID:7982564, PMID:12101121, PMID:12324593, PMID:12297633, PMID:12225663, PMID:12417148, PMID:12376646, PMID:12573220, PMID:12747833, PMID:12725739, PMID:12857820, PMID:14972688, PMID:15024409, PMID:15314213, PMID:15469823, PMID:15851028, PMID:16033795, PMID:16111943, PMID:16096641, PMID:16040244, PMID:16141062, PMID:16144699, PMID:15821876, PMID:16214897, PMID:16428603, PMID:16500993, PMID:16699516, PMID:16682354, PMID:16810317, PMID:16889646, PMID:17090584, PMID:17182867, PMID:17164336, PMID:17337628, PMID:17369351, PMID:17442570, PMID:17558406, PMID:17675322, PMID:18003861, PMID:18208512, PMID:18550839, PMID:18650403, PMID:18632581, PMID:18632569, PMID:18625233, PMID:18799732, PMID:18842626, PMID:18997003, PMID:19221817, PMID:17071740, PMID:18551175, PMID:19155326, PMID:19307293, PMID:19436261, PMID:19816405, PMID:20106953, PMID:20409179, PMID:20462493, PMID:20439431, PMID:20621980, PMID:20870966, PMID:19649244, PMID:19953107, PMID:21123653, PMID:21330492, PMID:21295131, PMID:21378120, PMID:21589905, PMID:21685453, PMID:22439910, PMID:22474216, PMID:22589469, PMID:22802657, PMID:22902697, PMID:22846193, PMID:23110057, PMID:23268445, PMID:23313986, PMID:23424246, PMID:23399598, PMID:23457227, PMID:23194006, PMID:23886622, PMID:23847640, PMID:23941160, PMID:23934148, PMID:23921632, PMID:24018204, PMID:24092744, PMID:24137006, PMID:24204292, PMID:24531234, PMID:24670663, PMID:24769482, PMID:24731939, PMID:24717238, PMID:24784759, PMID:25226037, PMID:25409478, PMID:25491479, PMID:25474114, PMID:25443390, PMID:23104109, locus:2200960; locus_type=protein_coding COOR W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079 HITS AF292941 [GenBank] TYPE Community DNA EVAL 99.93 LOCN Exon COOR W/23066-31204 HITS AF292940 [GenBank] TYPE Community cDNA EVAL 99.89 LOCN Exon COOR W/23146-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31153 HITS JN661701 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN Exon COOR W/23146-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31227 HITS JN661702 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN Exon COOR W/23146-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27687-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31227 HITS AF187317 [GenBank] TYPE Community cDNA EVAL 99.97 LOCN Exon COOR W/23510-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31155 HITS CATGAAAGAGATGT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/24152-24165 HITS ASRP16635 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/24315-24336 HITS CATGTTTGTATTCT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Intron COOR W/24470-24483 HITS GATCCGTAATCAAACTT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/24553-24569 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 HITS CATGTATAATGTCA [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/27431-27444 HITS GATCACTAAAGCATCTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/27659-27675 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 HITS ASRP200726 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/27833-27854 HITS GATCCCATGGTGTCGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/27871-27887 NOTE 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 HITS CATCCTTCGATGTTGTG [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN Exon COOR W/28152-28168 NOTE 1, +0 4 0 0 0 HITS RAFL07-36-P21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.54 LOCN Exon COOR W/28521-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31183 HITS ASRP159401 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Intron COOR W/28533-28556 HITS ASRP186012 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Intron COOR W/28634-28655 HITS BU636534 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/28909-29076,29158-29714 HITS ASRP87688 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR C/28969-28989 HITS GATCCGCCTGGATATAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/29372-29388 NOTE 0 0 0 0 0 2 0 0 10 0 0 0 0 1 0 0 0 HITS H36434 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/29496-29843 HITS ASRP174661 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/29599-29622 HITS ES185316 [GenBank] TYPE ESTs EVAL 1e-25 LOCN Exon COOR W/29876-29942 HITS GATCTGTTAACCGACCA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/29948-29964 NOTE 0 0 0 0 0 2 0 0 0 0 6 0 0 0 0 0 0 HITS ASRP90614 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/29951-29970 HITS GATCTTCGAGCTGCAGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/29961-29977 NOTE 0 0 1 0 0 2 6 0 2 0 0 0 0 0 0 5 0 HITS EH948322 [GenBank] TYPE ESTs EVAL 7e-28 LOCN Exon COOR W/30253-30314,30413-30442 HITS AI996152 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/30437-30816,30902-31161 NOTE EH971167 ES104193 HITS 261584_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR W/30443-30816,30902-31064 HITS GATCCTCTCCCGCATTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/30694-30710 NOTE 0 0 0 0 0 1 3 4 2 0 0 0 0 0 0 0 0 HITS BP789125 [GenBank] TYPE ESTs EVAL e-159 LOCN Exon COOR C/30700-30814,30900-31183 NOTE EH988836 EL096532 EL137132 EL281260 HITS GATCAAGGCGAGAATGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/30707-30723 NOTE 1 3 3 0 0 12 4 5 3 2 0 0 0 0 0 4 41 HITS BP787533 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/30707-30814,30900-31227 NOTE AA651141 EL120669 EG522515 EH902174 HITS CATGCAAAGAGATT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/30927-30940 HITS GATCTGTTGTTATTCGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/31156-31172 NOTE 19 22 13 11 50 12 19 17 19 22 4 0 0 12 0 58 37 HITS BP655894 [GenBank] TYPE ESTs EVAL e-135 LOCN 300-UTR3 COOR W/31170-31424,31521-31602 HITS RAFL08-11-E15 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.82 LOCN 300-UTR3 COOR C/31183-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33114 HITS AV535286 [GenBank] TYPE ESTs EVAL e-134 LOCN 300-UTR3 COOR W/31184-31424,31521-31602,31693-31815,31935-32000,32090-32120 NOTE AV781745 AV787299 HITS R13796 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 100.00 LOCN 300-UTR3 COOR C/31186-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33114 NOTE AY052717 HITS RAFL06-74-O18 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-108 LOCN 300-UTR3 COOR C/31188-31424,31521-31602,31693-31776 HITS AY085015 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN 300-UTR3 COOR C/31188-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33148 HITS DR380507 [GenBank] TYPE ESTs EVAL e-116 LOCN 300-UTR3 COOR C/31191-31424,31521-31602,31693-31815,31935-31996,32087-32193 NOTE AV806514 BP568979 BP571785 BP575972 AV815743 Z29202 BP783219 EH866522 AV783898 BP563653 BP629851 ES210801 ES159107 EH901232 ES098400 AI100063 EH830906 DR373797 AI994042 AI994013 AV561492 HITS R14690 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.78 LOCN 300-UTR3 COOR C/31195-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33117 NOTE AY057668 HITS RAFL09-46-O10 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-122 LOCN 300-UTR3 COOR C/31197-31424,31521-31602,31693-31776 HITS RAFL05-14-F05 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-114 LOCN 300-UTR3 COOR C/31209-31424,31521-31602,31693-31815,31935-31997,32087-32197,32284-32348,32432-32460 HITS R16094 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.78 LOCN 300-UTR3 COOR C/31209-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33118 NOTE AY065201 HITS U16094 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP Gateway Clone EVAL 100.00 LOCN 300-UTR3 COOR C/31216-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670 NOTE U16094 AY081555 pENTR-TOPO HITS AV537463 [GenBank] TYPE ESTs EVAL 2e-75 LOCN 300-UTR3 COOR W/31270-31424,31521-31602,31693-31815,31935-31997,32087-32197,32284-32348 NOTE AV538108 HITS BX841824 [GenBank] [Order] TYPE GSLT cDNA EVAL 3e-63 LOCN 300-UTR3 COOR C/31285-31424,31521-31602,31693-31815,31935-31997,32087-32197,32284-32348,32432-32458,32546-32672,33032-33107 HITS GATCCTAATTGATATTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/31296-31312 NOTE 202 374 163 359 201 0 0 0 3 0 0 0 0 1 0 0 2