AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON ATTTAACATTTTCCCGC[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr3
EVAL 100.00
COOR C/21883023-21883039
NOTE 1, +0 0 3 0 1

HITS AT3TE89130[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE89130 transposable_element ID=AT3TE89130; Name=AT3TE89130; Alias=SIMPLEHAT1 LOCN Exon COOR C/21882627-21883302,21883301-21883496 HITS AT3G09195.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G09195.1 lnc_RNA ID=AT3G09195.1; Parent=AT3G09195; Name=AT3G09195.1; locus_type=long_noncoding_rna LOCN 1000-Promotor COOR W/21883667-21883980 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/21882942-21882958 NOTE 1, +0 0 3 0 1 HITS AT3TE89130[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE89130 transposable_element ID=AT3TE89130; Name=AT3TE89130; Alias=SIMPLEHAT1 LOCN Exon COOR C/21882627-21883302,21883301-21883496 HITS AT3G09195.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G09195.1 lnc_RNA ID=AT3G09195.1; Parent=AT3G09195; Name=AT3G09195.1; locus_type=long_noncoding_rna LOCN 1000-Promotor COOR W/21883667-21883980 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/20188993-20189009 NOTE 1, +0 0 3 0 1 HITS AT3TE82060[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE82060 transposable_element ID=AT3TE82060; Name=AT3TE82060; Alias=SIMPLEHAT1 LOCN Exon COOR W/20188456-20188653,20188654-20189429 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/11982682-11982698 NOTE 1, +0 0 3 0 1 HITS AT3TE49905[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE49905 transposable_element ID=AT3TE49905; Name=AT3TE49905; Alias=SIMPLEHAT1 LOCN Exon COOR W/11982146-11982756,11982757-11982840 HITS AT3TE49910[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE49910 transposable_element ID=AT3TE49910; Name=AT3TE49910; Alias=SIMPLEHAT1 LOCN 300-UTR5 COOR W/11982841-11982890 HITS AT3TE49920[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE49920 transposable_element ID=AT3TE49920; Name=AT3TE49920; Alias=ATHATN3 LOCN 1000-Promotor COOR W/11983150-11983631 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/16626486-16626502 NOTE 1, +0 0 3 0 1 HITS AT2TE74725[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE74725 transposable_element ID=AT2TE74725; Name=AT2TE74725; Alias=SIMPLEHAT1 LOCN Exon COOR W/16625761-16626817 HITS AT2G39840.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2G39840.1 CDS ID=AT2G39840.1; Parent=AT2G39840; Name=AT2G39840.1; Note=type one serine/threonine protein phosphatase 4; curator_summary=Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase%2C expressed in roots%2C shoots and flowers.; conf_class=2; symbol=TOPP4; full_name=type one serine/threonine protein phosphatase 4; computational_description=type one serine/threonine protein phosphatase 4 (TOPP4)%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%2C Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186)%3B BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 2 (TAIR:AT5G59160.3)%3B Has 7176 Blast hits to 6978 proteins in 618 species: Archae - 78%3B Bacteria - 533%3B Metazoa - 2415%3B Fungi - 1410%3B Plants - 987%3B Viruses - 16%3B Other Eukaryotes - 1737 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9617814, PMID:7678768, PMID:12068129, PMID:16166256, PMID:17368080, PMID:18650403, PMID:21222654, PMID:25010794, PMID:25560878, locus:2063942; locus_type=protein_coding LOCN 1000-Promotor COOR W/16627430-16627646,16627963-16628522,16628601-16628789 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/16626323-16626339 NOTE 1, +0 0 3 0 1 HITS AT2TE74725[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE74725 transposable_element ID=AT2TE74725; Name=AT2TE74725; Alias=SIMPLEHAT1 LOCN Exon COOR W/16625761-16626817 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/16626246-16626262 NOTE 1, +0 0 3 0 1 HITS AT2TE74725[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE74725 transposable_element ID=AT2TE74725; Name=AT2TE74725; Alias=SIMPLEHAT1 LOCN Exon COOR W/16625761-16626817 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/13794297-13794313 NOTE 1, +0 0 3 0 1 HITS AT2TE60750[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE60750 transposable_element ID=AT2TE60750; Name=AT2TE60750; Alias=SIMPLEHAT1 LOCN Exon COOR W/13793630-13793825,13793811-13794625 HITS AT2G32490.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2G32490.1 pseudogenic_transcript ID=AT2G32490.1; Parent=AT2G32490; Name=AT2G32490.1; curator_summary=pseudogene of 3'-5' exonuclease domain-containing protein; Note=pseudogene; Dbxref=locus:2060300; computational_description=pseudogene of Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein; locus_type=pseudogene LOCN 1000-Promotor COOR W/13794627-13795229 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/13794139-13794162 NOTE 2, +0 0 3 0 1, +7 5 0 0 0 HITS AT2TE60750[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE60750 transposable_element ID=AT2TE60750; Name=AT2TE60750; Alias=SIMPLEHAT1 LOCN Exon COOR W/13793630-13793825,13793811-13794625 HITS AT2G32490.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2G32490.1 pseudogenic_transcript ID=AT2G32490.1; Parent=AT2G32490; Name=AT2G32490.1; curator_summary=pseudogene of 3'-5' exonuclease domain-containing protein; Note=pseudogene; Dbxref=locus:2060300; computational_description=pseudogene of Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein; locus_type=pseudogene LOCN 1000-Promotor COOR W/13794627-13795229 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/10507865-10507881 NOTE 1, +0 0 3 0 1 HITS AT2TE45095[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE45095 transposable_element ID=AT2TE45095; Name=AT2TE45095; Alias=ATHATN3A LOCN Intron COOR C/10507114-10507248,10508560-10508711 HITS AT2TE45100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE45100 transposable_element ID=AT2TE45100; Name=AT2TE45100; Alias=ATHATN3A LOCN 1000-Promotor COOR C/10507249-10507372 HITS AT2TE45105[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE45105 transposable_element ID=AT2TE45105; Name=AT2TE45105; Alias=SIMPLEHAT1 LOCN Exon COOR W/10507373-10508559 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/7442157-7442173 NOTE 1, +0 0 3 0 1 HITS AT2TE30510[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE30510 transposable_element ID=AT2TE30510; Name=AT2TE30510; Alias=SIMPLEHAT1 LOCN Exon COOR C/7441676-7442657 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/7442079-7442095 NOTE 1, +0 0 3 0 1 HITS AT2TE30510[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE30510 transposable_element ID=AT2TE30510; Name=AT2TE30510; Alias=SIMPLEHAT1 LOCN Exon COOR C/7441676-7442657 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/7441916-7441932 NOTE 1, +0 0 3 0 1 HITS AT2TE30510[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE30510 transposable_element ID=AT2TE30510; Name=AT2TE30510; Alias=SIMPLEHAT1 LOCN Exon COOR C/7441676-7442657 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/28913220-28913236 NOTE 1, +0 0 3 0 1 HITS AT1TE94570[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE94570 transposable_element ID=AT1TE94570; Name=AT1TE94570; Alias=SIMPLEHAT1 LOCN Exon COOR C/28912664-28913487,28913474-28913670 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/28913142-28913158 NOTE 1, +0 0 3 0 1 HITS AT1TE94570[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE94570 transposable_element ID=AT1TE94570; Name=AT1TE94570; Alias=SIMPLEHAT1 LOCN Exon COOR C/28912664-28913487,28913474-28913670 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/28913088-28913104 NOTE 1, +0 0 3 0 1 HITS AT1TE94570[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE94570 transposable_element ID=AT1TE94570; Name=AT1TE94570; Alias=SIMPLEHAT1 LOCN Exon COOR C/28912664-28913487,28913474-28913670 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/28912979-28912995 NOTE 1, +0 0 3 0 1 HITS AT1TE94570[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE94570 transposable_element ID=AT1TE94570; Name=AT1TE94570; Alias=SIMPLEHAT1 LOCN Exon COOR C/28912664-28913487,28913474-28913670 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/21744829-21744857 NOTE 2, +0 0 3 0 1, +12 1 0 0 0 HITS AT1G58590.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G58590.2 ncRNA ID=AT1G58590.2; Parent=AT1G58590; Name=AT1G58590.2; index=1; curator_summary=Unknown gene; Dbxref=locus:4010713563; Note=other_RNA; locus_type=other_rna LOCN 1000-Promotor COOR C/21742944-21743877 HITS AT1G58590.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G58590.1 ncRNA ID=AT1G58590.1; Parent=AT1G58590; Name=AT1G58590.1; index=1; curator_summary=Unknown gene; Dbxref=locus:4010713563; Note=other_RNA; locus_type=other_rna LOCN 1000-Promotor COOR C/21743159-21743891 HITS AT1TE71750[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE71750 transposable_element ID=AT1TE71750; Name=AT1TE71750; Alias=ATDNAI27T9C LOCN 1000-Promotor COOR C/21744009-21744194 HITS AT1TE71755[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE71755 transposable_element ID=AT1TE71755; Name=AT1TE71755; Alias=SIMPLEHAT1 LOCN Exon COOR C/21744195-21745093 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/21744351-21744367 NOTE 1, +0 0 3 0 1 HITS AT1G58590.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G58590.2 ncRNA ID=AT1G58590.2; Parent=AT1G58590; Name=AT1G58590.2; index=1; curator_summary=Unknown gene; Dbxref=locus:4010713563; Note=other_RNA; locus_type=other_rna LOCN 1000-Promotor COOR C/21742944-21743877 HITS AT1G58590.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G58590.1 ncRNA ID=AT1G58590.1; Parent=AT1G58590; Name=AT1G58590.1; index=1; curator_summary=Unknown gene; Dbxref=locus:4010713563; Note=other_RNA; locus_type=other_rna LOCN 1000-Promotor COOR C/21743159-21743891 HITS AT1TE71750[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE71750 transposable_element ID=AT1TE71750; Name=AT1TE71750; Alias=ATDNAI27T9C LOCN 300-UTR5 COOR C/21744009-21744194 HITS AT1TE71755[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE71755 transposable_element ID=AT1TE71755; Name=AT1TE71755; Alias=SIMPLEHAT1 LOCN Exon COOR C/21744195-21745093 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/17267840-17267856 NOTE 1, +0 0 3 0 1 HITS AT1TE57235[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE57235 transposable_element ID=AT1TE57235; Name=AT1TE57235; Alias=SIMPLEHAT1 LOCN Exon COOR W/17267055-17267252,17267229-17268180 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/17267731-17267747 NOTE 1, +0 0 3 0 1 HITS AT1TE57235[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE57235 transposable_element ID=AT1TE57235; Name=AT1TE57235; Alias=SIMPLEHAT1 LOCN Exon COOR W/17267055-17267252,17267229-17268180 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/17267624-17267640 NOTE 1, +0 0 3 0 1 HITS AT1TE57235[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE57235 transposable_element ID=AT1TE57235; Name=AT1TE57235; Alias=SIMPLEHAT1 LOCN Exon COOR W/17267055-17267252,17267229-17268180 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/13152277-13152293 NOTE 1, +0 0 3 0 1 HITS AT1TE42925[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE42925 transposable_element ID=AT1TE42925; Name=AT1TE42925; Alias=ATMU10 LOCN 1000-Promotor COOR C/13151143-13151181,13151192-13151476 HITS AT1TE42930[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE42930 transposable_element ID=AT1TE42930; Name=AT1TE42930; Alias=SIMPLEHAT1 LOCN Exon COOR C/13151880-13152923 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/11818186-11818202 NOTE 1, +0 0 3 0 1 HITS AT1TE38300[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE38300 transposable_element ID=AT1TE38300; Name=AT1TE38300; Alias=SIMPLEHAT1 LOCN Exon COOR C/11817658-11818565,11818546-11818739 HITS AT1G32680.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G32680.1 CDS ID=AT1G32680.1; Parent=AT1G32680; Name=AT1G32680.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35880.1); Dbxref=PMID:17915010, locus:2035569; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN Exon COOR W/11818034-11818279 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/11818107-11818123 NOTE 1, +0 0 3 0 1 HITS AT1TE38300[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE38300 transposable_element ID=AT1TE38300; Name=AT1TE38300; Alias=SIMPLEHAT1 LOCN Exon COOR C/11817658-11818565,11818546-11818739 HITS AT1G32680.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G32680.1 CDS ID=AT1G32680.1; Parent=AT1G32680; Name=AT1G32680.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35880.1); Dbxref=PMID:17915010, locus:2035569; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN Exon COOR W/11818034-11818279 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/11818053-11818069 NOTE 1, +0 0 3 0 1 HITS AT1TE38300[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE38300 transposable_element ID=AT1TE38300; Name=AT1TE38300; Alias=SIMPLEHAT1 LOCN Exon COOR C/11817658-11818565,11818546-11818739 HITS AT1G32680.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G32680.1 CDS ID=AT1G32680.1; Parent=AT1G32680; Name=AT1G32680.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35880.1); Dbxref=PMID:17915010, locus:2035569; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN Exon COOR W/11818034-11818279 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/6743811-6743827 NOTE 1, +0 0 3 0 1 HITS AT1TE21805[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE21805 transposable_element ID=AT1TE21805; Name=AT1TE21805; Alias=SIMPLEHAT1 LOCN Exon COOR W/6742979-6744224 HITS AT1G19480.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G19480.1 CDS ID=AT1G19480.1; Parent=AT1G19480; Name=AT1G19480.1; Note=DNA glycosylase superfamily protein; conf_class=2; computational_description=DNA glycosylase superfamily protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C HhH-GPD domain (InterPro:IPR003265)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1)%3B Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62%3B Bacteria - 2357%3B Metazoa - 1%3B Fungi - 142%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 1961 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:20736450, locus:2016457; locus_type=protein_coding LOCN 1000-Promotor COOR W/6744520-6745649,6746126-6746144 HITS AT1G19480.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G19480.2 CDS ID=AT1G19480.2; Parent=AT1G19480; Name=AT1G19480.2; Note=DNA glycosylase superfamily protein; conf_class=1; computational_description=DNA glycosylase superfamily protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C HhH-GPD domain (InterPro:IPR003265)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1)%3B Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62%3B Bacteria - 2357%3B Metazoa - 1%3B Fungi - 142%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 1961 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:20736450, locus:2016457; locus_type=protein_coding LOCN 1000-Promotor COOR W/6744520-6745653 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/6743280-6743303 NOTE 2, +0 0 3 0 1, +7 5 0 0 0 HITS AT1TE21805[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE21805 transposable_element ID=AT1TE21805; Name=AT1TE21805; Alias=SIMPLEHAT1 LOCN Exon COOR W/6742979-6744224 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/56245-56261 NOTE 1, +0 0 3 0 1 HITS AT1TE00150[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE00150 transposable_element ID=AT1TE00150; Name=AT1TE00150; Alias=SIMPLEHAT1 LOCN Exon COOR W/55676-55873,55874-56576 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/56134-56150 NOTE 1, +0 0 3 0 1 HITS AT1TE00150[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE00150 transposable_element ID=AT1TE00150; Name=AT1TE00150; Alias=SIMPLEHAT1 LOCN Exon COOR W/55676-55873,55874-56576 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/56080-56096 NOTE 1, +0 0 3 0 1 HITS AT1TE00150[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE00150 transposable_element ID=AT1TE00150; Name=AT1TE00150; Alias=SIMPLEHAT1 LOCN Exon COOR W/55676-55873,55874-56576 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/56002-56018 NOTE 1, +0 0 3 0 1 HITS AT1TE00150[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE00150 transposable_element ID=AT1TE00150; Name=AT1TE00150; Alias=SIMPLEHAT1 LOCN Exon COOR W/55676-55873,55874-56576 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/5293295-5293311 NOTE 1, +0 0 3 0 1 HITS AT4G05415.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G05415.1 miRNA_primary_transcript ID=AT4G05415.1; Parent=AT4G05415; Alias=MI0019245; Name=ath-MIR5660; symbol=ath-MIR5660; Note=microRNA ath-MIR5660 precursor; locus_type=mirna LOCN 1000-Promotor COOR C/5292626-5292820 HITS AT4TE22035[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22035 transposable_element ID=AT4TE22035; Name=AT4TE22035; Alias=ATCOPIA95 LOCN 1000-Promotor COOR C/5292738-5292832 HITS ath-miR5660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL ath-miR5660 miRNA ID=ath-miR5660; Alias=MIMAT0022434; Name=ath-miR5660; Derives_from=AT4G05415.1; Note=microRNA ath-miR5660; computational_description=mature miRNA accession:MIMAT0022434 LOCN 1000-Promotor COOR C/5292748-5292768 HITS AT4TE22040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22040 transposable_element ID=AT4TE22040; Name=AT4TE22040; Alias=SIMPLEHAT1 LOCN Exon COOR C/5292981-5294223 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/5293377-5293393 NOTE 1, +0 0 3 0 1 HITS AT4G05415.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G05415.1 miRNA_primary_transcript ID=AT4G05415.1; Parent=AT4G05415; Alias=MI0019245; Name=ath-MIR5660; symbol=ath-MIR5660; Note=microRNA ath-MIR5660 precursor; locus_type=mirna LOCN 1000-Promotor COOR C/5292626-5292820 HITS AT4TE22035[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22035 transposable_element ID=AT4TE22035; Name=AT4TE22035; Alias=ATCOPIA95 LOCN 1000-Promotor COOR C/5292738-5292832 HITS ath-miR5660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL ath-miR5660 miRNA ID=ath-miR5660; Alias=MIMAT0022434; Name=ath-miR5660; Derives_from=AT4G05415.1; Note=microRNA ath-miR5660; computational_description=mature miRNA accession:MIMAT0022434 LOCN 1000-Promotor COOR C/5292748-5292768 HITS AT4TE22040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22040 transposable_element ID=AT4TE22040; Name=AT4TE22040; Alias=SIMPLEHAT1 LOCN Exon COOR C/5292981-5294223 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/5293455-5293471 NOTE 1, +0 0 3 0 1 HITS AT4G05415.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G05415.1 miRNA_primary_transcript ID=AT4G05415.1; Parent=AT4G05415; Alias=MI0019245; Name=ath-MIR5660; symbol=ath-MIR5660; Note=microRNA ath-MIR5660 precursor; locus_type=mirna LOCN 1000-Promotor COOR C/5292626-5292820 HITS AT4TE22035[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22035 transposable_element ID=AT4TE22035; Name=AT4TE22035; Alias=ATCOPIA95 LOCN 1000-Promotor COOR C/5292738-5292832 HITS ath-miR5660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL ath-miR5660 miRNA ID=ath-miR5660; Alias=MIMAT0022434; Name=ath-miR5660; Derives_from=AT4G05415.1; Note=microRNA ath-miR5660; computational_description=mature miRNA accession:MIMAT0022434 LOCN 1000-Promotor COOR C/5292748-5292768 HITS AT4TE22040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22040 transposable_element ID=AT4TE22040; Name=AT4TE22040; Alias=SIMPLEHAT1 LOCN Exon COOR C/5292981-5294223 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/5293588-5293604 NOTE 1, +0 0 3 0 1 HITS AT4G05415.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G05415.1 miRNA_primary_transcript ID=AT4G05415.1; Parent=AT4G05415; Alias=MI0019245; Name=ath-MIR5660; symbol=ath-MIR5660; Note=microRNA ath-MIR5660 precursor; locus_type=mirna LOCN 1000-Promotor COOR C/5292626-5292820 HITS AT4TE22035[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22035 transposable_element ID=AT4TE22035; Name=AT4TE22035; Alias=ATCOPIA95 LOCN 1000-Promotor COOR C/5292738-5292832 HITS ath-miR5660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL ath-miR5660 miRNA ID=ath-miR5660; Alias=MIMAT0022434; Name=ath-miR5660; Derives_from=AT4G05415.1; Note=microRNA ath-miR5660; computational_description=mature miRNA accession:MIMAT0022434 LOCN 1000-Promotor COOR C/5292748-5292768 HITS AT4TE22040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22040 transposable_element ID=AT4TE22040; Name=AT4TE22040; Alias=SIMPLEHAT1 LOCN Exon COOR C/5292981-5294223 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/5293644-5293660 NOTE 1, +0 0 3 0 1 HITS AT4G05415.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G05415.1 miRNA_primary_transcript ID=AT4G05415.1; Parent=AT4G05415; Alias=MI0019245; Name=ath-MIR5660; symbol=ath-MIR5660; Note=microRNA ath-MIR5660 precursor; locus_type=mirna LOCN 1000-Promotor COOR C/5292626-5292820 HITS AT4TE22035[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22035 transposable_element ID=AT4TE22035; Name=AT4TE22035; Alias=ATCOPIA95 LOCN 1000-Promotor COOR C/5292738-5292832 HITS ath-miR5660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL ath-miR5660 miRNA ID=ath-miR5660; Alias=MIMAT0022434; Name=ath-miR5660; Derives_from=AT4G05415.1; Note=microRNA ath-miR5660; computational_description=mature miRNA accession:MIMAT0022434 LOCN 1000-Promotor COOR C/5292748-5292768 HITS AT4TE22040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22040 transposable_element ID=AT4TE22040; Name=AT4TE22040; Alias=SIMPLEHAT1 LOCN Exon COOR C/5292981-5294223 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/5293722-5293738 NOTE 1, +0 0 3 0 1 HITS AT4G05415.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G05415.1 miRNA_primary_transcript ID=AT4G05415.1; Parent=AT4G05415; Alias=MI0019245; Name=ath-MIR5660; symbol=ath-MIR5660; Note=microRNA ath-MIR5660 precursor; locus_type=mirna LOCN 1000-Promotor COOR C/5292626-5292820 HITS AT4TE22035[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22035 transposable_element ID=AT4TE22035; Name=AT4TE22035; Alias=ATCOPIA95 LOCN 1000-Promotor COOR C/5292738-5292832 HITS ath-miR5660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL ath-miR5660 miRNA ID=ath-miR5660; Alias=MIMAT0022434; Name=ath-miR5660; Derives_from=AT4G05415.1; Note=microRNA ath-miR5660; computational_description=mature miRNA accession:MIMAT0022434 LOCN 1000-Promotor COOR C/5292748-5292768 HITS AT4TE22040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4TE22040 transposable_element ID=AT4TE22040; Name=AT4TE22040; Alias=SIMPLEHAT1 LOCN Exon COOR C/5292981-5294223 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/9802547-9802563 NOTE 1, +0 0 3 0 1 HITS AT5TE35650[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE35650 transposable_element ID=AT5TE35650; Name=AT5TE35650; Alias=HELITRONY3 LOCN 1000-Promotor COOR C/9801393-9801642,9802009-9802122 HITS AT5TE35660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE35660 transposable_element ID=AT5TE35660; Name=AT5TE35660; Alias=SIMPLEHAT1 LOCN Exon COOR C/9802123-9802916 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/13417618-13417634 NOTE 1, +0 0 3 0 1 HITS AT5TE47555[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE47555 transposable_element ID=AT5TE47555; Name=AT5TE47555; Alias=SIMPLEHAT1 LOCN Exon COOR C/13417303-13418071,13418057-13418253 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/14023045-14023061 NOTE 1, +0 0 3 0 1 HITS AT5TE49990[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE49990 transposable_element ID=AT5TE49990; Name=AT5TE49990; Alias=SIMPLEHAT1 LOCN Exon COOR W/14022480-14023539 HITS AT5G35880.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G35880.1 CDS ID=AT5G35880.1; Parent=AT5G35880; Name=AT5G35880.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1); Dbxref=locus:2165159; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN 300-UTR5 COOR C/14022866-14023024 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/14023099-14023115 NOTE 1, +0 0 3 0 1 HITS AT5TE49990[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE49990 transposable_element ID=AT5TE49990; Name=AT5TE49990; Alias=SIMPLEHAT1 LOCN Exon COOR W/14022480-14023539 HITS AT5G35880.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G35880.1 CDS ID=AT5G35880.1; Parent=AT5G35880; Name=AT5G35880.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1); Dbxref=locus:2165159; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN 300-UTR5 COOR C/14022866-14023024 CLON ATTTAACATTTTCCCGC[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/14023208-14023224 NOTE 1, +0 0 3 0 1 HITS AT5TE49990[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE49990 transposable_element ID=AT5TE49990; Name=AT5TE49990; Alias=SIMPLEHAT1 LOCN Exon COOR W/14022480-14023539 HITS AT5G35880.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G35880.1 CDS ID=AT5G35880.1; Parent=AT5G35880; Name=AT5G35880.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1); Dbxref=locus:2165159; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN 300-UTR5 COOR C/14022866-14023024

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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