AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON CATGTTTTGTTCAC[About SAGE] 
TYPE SAGE Target
CHRO chr1
EVAL 100
COOR W/59335-59348

HITS AT1G01120.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01120.1 CDS ID=AT1G01120.1; Parent=AT1G01120; Name=AT1G01120.1; Note=3-ketoacyl-CoA synthase 1; curator_summary=Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.; conf_class=1; symbol=KCS1; full_name=3-ketoacyl-CoA synthase 1; computational_description=3-ketoacyl-CoA synthase 1 (KCS1)%3B FUNCTIONS IN: fatty acid elongase activity%2C acyltransferase activity%3B INVOLVED IN: in 7 processes%3B LOCATED IN: cytosolic ribosome%2C endoplasmic reticulum%2C membrane%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039)%2C Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392)%2C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747)%2C FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601)%2C Thiolase-like%2C subgroup (InterPro:IPR016038)%3B BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 11 (TAIR:AT2G26640.1)%3B Has 3961 Blast hits to 3946 proteins in 966 species: Archae - 0%3B Bacteria - 1388%3B Metazoa - 0%3B Fungi - 5%3B Plants - 2408%3B Viruses - 0%3B Other Eukaryotes - 160 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10074711, PMID:11341960, PMID:12753585, PMID:15070782, PMID:18465198, PMID:18650403, PMID:20736450, PMID:22284369, PMID:23505340, locus:2200955; locus_type=protein_coding LOCN 1000-Promotor COOR C/57392-58978 CLON CATGTTTTGTTCAC[About SAGE] TYPE SAGE Target CHRO chr3 EVAL 100 COOR W/12237946-12237959 HITS AT3TE50690[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE50690 transposable_element ID=AT3TE50690; Name=AT3TE50690; Alias=HELITRON1 LOCN 1000-Promotor COOR C/12237519-12237553 HITS AT3TE50695[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE50695 transposable_element ID=AT3TE50695; Name=AT3TE50695; Alias=HELITRON1 LOCN 300-UTR5 COOR C/12237554-12237892 HITS AT3TE50700[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE50700 transposable_element ID=AT3TE50700; Name=AT3TE50700; Alias=HELITRONY1B LOCN Exon COOR W/12237944-12237985 HITS AT3TE50705[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE50705 transposable_element ID=AT3TE50705; Name=AT3TE50705; Alias=ATREP10A LOCN 300-UTR3 COOR C/12237986-12238519 HITS AT3TE50710[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3TE50710 transposable_element ID=AT3TE50710; Name=AT3TE50710; Alias=HELITRONY1B LOCN 1000-Promotor COOR W/12238520-12238838 CLON CATGTTTTGTTCAC[About SAGE] TYPE SAGE Target CHRO chr5 EVAL 100 COOR W/891680-891693 HITS AT5G03540.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G03540.1 CDS ID=AT5G03540.1; Parent=AT5G03540; Name=AT5G03540.1; Note=exocyst subunit exo70 family protein A1; curator_summary=AtEXO70A1 is a member of EXO70 gene family%2C putative exocyst subunits%2C conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes%2C which can be classified into nine clusters on the phylogenetic tree; conf_class=2; symbol=EXO70A1; Alias=ATEXO70A1, exocyst subunit exo70 family protein A1; full_name=exocyst subunit exo70 family protein A1; computational_description=exocyst subunit exo70 family protein A1 (EXO70A1)%3B INVOLVED IN: lateral root morphogenesis%2C mucilage biosynthetic process involved in seed coat development%2C root development%2C vesicle docking involved in exocytosis%3B LOCATED IN: cytosol%2C nucleus%2C plasma membrane%2C membrane%2C exocyst%3B EXPRESSED IN: cultured cell%2C leaf%3B CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140)%3B BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein A2 (TAIR:AT5G52340.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12953064, PMID:14973164, PMID:16942608, PMID:18492870, PMID:19895414, PMID:20870962, PMID:20943851, PMID:21193573, PMID:22025723, PMID:23163883, PMID:23283982, PMID:23709627, PMID:23944713, PMID:24307681, PMID:25551204, PMID:25658798, locus:2142699; locus_type=protein_coding LOCN Intron COOR W/889606-889764,889888-889983,890104-890309,890690-890920,891506-891644,891722-891934,892546-892751,892870-893070,893172-893271,893361-893461,893554-893700,893799-893916 HITS AT5G03540.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G03540.3 CDS ID=AT5G03540.3; Parent=AT5G03540; Name=AT5G03540.3; Note=exocyst subunit exo70 family protein A1; curator_summary=AtEXO70A1 is a member of EXO70 gene family%2C putative exocyst subunits%2C conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes%2C which can be classified into nine clusters on the phylogenetic tree; conf_class=6; symbol=EXO70A1; Alias=ATEXO70A1, exocyst subunit exo70 family protein A1; full_name=exocyst subunit exo70 family protein A1; computational_description=exocyst subunit exo70 family protein A1 (EXO70A1)%3B INVOLVED IN: lateral root morphogenesis%2C mucilage biosynthetic process involved in seed coat development%2C root development%2C vesicle docking involved in exocytosis%3B LOCATED IN: cytosol%2C nucleus%2C plasma membrane%2C membrane%2C exocyst%3B EXPRESSED IN: cultured cell%2C leaf%3B CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140)%3B BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein A2 (TAIR:AT5G52340.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12953064, PMID:14973164, PMID:16942608, PMID:18492870, PMID:19895414, PMID:20870962, PMID:20943851, PMID:21193573, PMID:22025723, PMID:23163883, PMID:23283982, PMID:23709627, PMID:23944713, PMID:24307681, PMID:25551204, PMID:25658798, locus:2142699; locus_type=protein_coding LOCN Intron COOR W/889606-889764,889888-889983,890104-890309,890517-890594,890690-890920,891506-891644,891722-891934,892546-892751,892870-893070,893172-893271,893361-893461,893554-893700,893799-893916 HITS AT5G03540.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G03540.2 CDS ID=AT5G03540.2; Parent=AT5G03540; Name=AT5G03540.2; Note=exocyst subunit exo70 family protein A1; curator_summary=AtEXO70A1 is a member of EXO70 gene family%2C putative exocyst subunits%2C conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes%2C which can be classified into nine clusters on the phylogenetic tree; conf_class=3; symbol=EXO70A1; Alias=ATEXO70A1, exocyst subunit exo70 family protein A1; full_name=exocyst subunit exo70 family protein A1; computational_description=exocyst subunit exo70 family protein A1 (EXO70A1)%3B INVOLVED IN: lateral root morphogenesis%2C mucilage biosynthetic process involved in seed coat development%2C root development%2C vesicle docking involved in exocytosis%3B LOCATED IN: cytosol%2C nucleus%2C plasma membrane%2C membrane%2C exocyst%3B EXPRESSED IN: cultured cell%2C leaf%3B CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140)%3B BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein A2 (TAIR:AT5G52340.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12953064, PMID:14973164, PMID:16942608, PMID:18492870, PMID:19895414, PMID:20870962, PMID:20943851, PMID:21193573, PMID:22025723, PMID:23163883, PMID:23283982, PMID:23709627, PMID:23944713, PMID:24307681, PMID:25551204, PMID:25658798, locus:2142699; locus_type=protein_coding LOCN Intron COOR W/890194-890309,890690-890920,891506-891644,891722-891934,892546-892751,892870-893070,893172-893271,893361-893461,893554-893700,893799-893916

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