AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON CATGTTGTTGCAAC[About SAGE] 
TYPE SAGE Target
CHRO chr1
EVAL 100
COOR W/39247-39260

HITS AT1G01070.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01070.1 CDS ID=AT1G01070.1; Parent=AT1G01070; Name=AT1G01070.1; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=nodulin MtN21-like transporter family protein; conf_class=2; symbol=UMAMIT28; full_name=Usually multiple acids move in and out Transporters 28; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1)%3B Has 3211 Blast hits to 3199 proteins in 599 species: Archae - 23%3B Bacteria - 1686%3B Metazoa - 4%3B Fungi - 6%3B Plants - 1233%3B Viruses - 0%3B Other Eukaryotes - 259 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, locus:2200990; locus_type=protein_coding LOCN Exon COOR C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40877 HITS AT1G01070.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01070.2 CDS ID=AT1G01070.2; Parent=AT1G01070; Name=AT1G01070.2; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=nodulin MtN21-like transporter family protein; conf_class=1; symbol=UMAMIT28; full_name=Usually multiple acids move in and out Transporters 28; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1)%3B Has 3211 Blast hits to 3199 proteins in 599 species: Archae - 23%3B Bacteria - 1686%3B Metazoa - 4%3B Fungi - 6%3B Plants - 1233%3B Viruses - 0%3B Other Eukaryotes - 259 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15703057, locus:2200990; locus_type=protein_coding LOCN Exon COOR C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40597 CLON CATGTTGTTGCAAC[About SAGE] TYPE SAGE Target CHRO chr2 EVAL 100 COOR W/10770366-10770379 HITS AT2TE46220[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2TE46220 transposable_element ID=AT2TE46220; Name=AT2TE46220; Alias=ATREP10D LOCN 300-UTR3 COOR W/10769094-10770246 HITS AT2G25295.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT2G25295.1 CDS ID=AT2G25295.1; Parent=AT2G25295; Name=AT2G25295.1; Note=low-molecular-weight cysteine-rich 81; curator_summary=Encodes a member of a family of small%2Csecreted%2C cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.; conf_class=6; symbol=LCR81; full_name=low-molecular-weight cysteine-rich 81; computational_description=low-molecular-weight cysteine-rich 81 (LCR81)%3B INVOLVED IN: defense response%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20070.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11437247, locus:1009023156; locus_type=protein_coding LOCN Exon COOR W/10769933-10769999,10770249-10770421 CLON CATGTTGTTGCAAC[About SAGE] TYPE SAGE Target CHRO chr3 EVAL 100 COOR W/9306146-9306159 HITS AT3G25597.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G25597.1 CDS ID=AT3G25597.1; Parent=AT3G25597; Name=AT3G25597.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26140.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20032078, locus:1009023261; locus_type=protein_coding LOCN Exon COOR W/9306103-9306585

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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