AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON GATCTTCTTCTTCGATT[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr1
EVAL 100.00
COOR C/45332-45348
NOTE 0 69 42 6 68 4 30 11 24 0 0 10 12 9 0 0 20

HITS AT1G01080.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01080.1 CDS ID=AT1G01080.1; Parent=AT1G01080; Name=AT1G01080.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding LOCN 300-UTR3 COOR C/45503-45559,45646-45954,46044-46145,46376-46789 HITS AT1G01080.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01080.2 CDS ID=AT1G01080.2; Parent=AT1G01080; Name=AT1G01080.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding LOCN 300-UTR3 COOR C/45503-45559,45646-45954,46044-46145,46373-46789 HITS AT1G01080.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01080.3 CDS ID=AT1G01080.3; Parent=AT1G01080; Name=AT1G01080.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding LOCN 300-UTR3 COOR C/45610-45954,46044-46145,46376-46789 CLON GATCTTCTTCTTCGATT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr5 EVAL 100.00 COOR C/16810395-16810411 NOTE 0 69 42 6 68 4 30 11 24 0 0 10 12 9 0 0 20 HITS AT5G42020.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G42020.1 CDS ID=AT5G42020.1; Parent=AT5G42020; Name=AT5G42020.1; Note=Heat shock protein 70 (Hsp 70) family protein; curator_summary=Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei.; conf_class=2; symbol=BIP2; computational_description=BIP2%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%2C response to cadmium ion%2C response to heat%2C polar nucleus fusion%2C response to endoplasmic reticulum stress%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein 70%2C conserved site (InterPro:IPR018181)%2C Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1)%3B Has 36681 Blast hits to 36078 proteins in 4871 species: Archae - 169%3B Bacteria - 17752%3B Metazoa - 3980%3B Fungi - 1822%3B Plants - 1284%3B Viruses - 342%3B Other Eukaryotes - 11332 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10517826, PMID:8888624, PMID:7724680, PMID:11402207, PMID:12172839, PMID:15781873, PMID:16467298, PMID:16618929, PMID:16781668, PMID:17059403, PMID:17761429, PMID:18156219, PMID:18296626, PMID:18650403, PMID:18849477, PMID:19923238, PMID:20080634, PMID:20118269, PMID:20358261, PMID:21277284, PMID:21697507, PMID:22323770, PMID:22701744, PMID:23148892, PMID:23261264, PMID:24064926, PMID:24486762, PMID:23867017, PMID:25231968, locus:2165715; locus_type=protein_coding LOCN Intron COOR C/16807697-16808204,16808294-16809011,16809221-16809463,16809570-16809784,16809866-16810133,16810426-16810480 HITS AT5G42020.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G42020.2 CDS ID=AT5G42020.2; Parent=AT5G42020; Name=AT5G42020.2; Note=Heat shock protein 70 (Hsp 70) family protein; curator_summary=Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei.; conf_class=2; symbol=BIP2; computational_description=BIP2%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%2C response to cadmium ion%2C response to heat%2C polar nucleus fusion%2C response to endoplasmic reticulum stress%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein 70%2C conserved site (InterPro:IPR018181)%2C Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1)%3B Has 36681 Blast hits to 36078 proteins in 4871 species: Archae - 169%3B Bacteria - 17752%3B Metazoa - 3980%3B Fungi - 1822%3B Plants - 1284%3B Viruses - 342%3B Other Eukaryotes - 11332 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10517826, PMID:8888624, PMID:7724680, PMID:11402207, PMID:12172839, PMID:15781873, PMID:16467298, PMID:16618929, PMID:16781668, PMID:17059403, PMID:17761429, PMID:18156219, PMID:18296626, PMID:18650403, PMID:18849477, PMID:19923238, PMID:20080634, PMID:20118269, PMID:20358261, PMID:21277284, PMID:21697507, PMID:22323770, PMID:22701744, PMID:23148892, PMID:23261264, PMID:24064926, PMID:24486762, PMID:23867017, PMID:25231968, locus:2165715; locus_type=protein_coding LOCN Intron COOR C/16807697-16808008,16808174-16808204,16808294-16809011,16809221-16809463,16809570-16809784,16809866-16810133,16810426-16810480 HITS AT5G42020.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G42020.3 CDS ID=AT5G42020.3; Parent=AT5G42020; Name=AT5G42020.3; Note=Heat shock protein 70 (Hsp 70) family protein; symbol=BIP2; curator_summary=Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei.; computational_description=BIP2%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%2C response to cadmium ion%2C response to heat%2C polar nucleus fusion%2C response to endoplasmic reticulum stress%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein 70%2C conserved site (InterPro:IPR018181)%2C Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1)%3B Has 36681 Blast hits to 36078 proteins in 4871 species: Archae - 169%3B Bacteria - 17752%3B Metazoa - 3980%3B Fungi - 1822%3B Plants - 1284%3B Viruses - 342%3B Other Eukaryotes - 11332 (source: NCBI BLink).; Dbxref=PMID:10517826, PMID:8888624, PMID:7724680, PMID:11402207, PMID:12172839, PMID:15781873, PMID:16467298, PMID:16618929, PMID:16781668, PMID:17059403, PMID:17761429, PMID:18156219, PMID:18296626, PMID:18650403, PMID:18849477, PMID:19923238, PMID:20080634, PMID:20118269, PMID:20358261, PMID:21277284, PMID:21697507, PMID:22323770, PMID:22701744, PMID:23148892, PMID:23261264, PMID:24064926, PMID:24486762, PMID:23867017, PMID:25231968, locus:2165715; locus_type=protein_coding LOCN 300-UTR5 COOR C/16807697-16808204,16808294-16809011,16809221-16809463,16809570-16809784,16809866-16810133,16810275-16810344 HITS AT5TE60690[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5TE60690 transposable_element ID=AT5TE60690; Name=AT5TE60690; Alias=ATHATN4 LOCN 1000-Promotor COOR W/16810811-16811155

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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