AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON GATCGAGAAGAAGAAGA[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr1
EVAL 100.00
COOR W/46743-46759
NOTE 0 0 0 0 0 0 5 1 1 0 0 0 0 0 0 8 0

HITS AT1G01080.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01080.1 CDS ID=AT1G01080.1; Parent=AT1G01080; Name=AT1G01080.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding LOCN Exon COOR C/45503-45559,45646-45954,46044-46145,46376-46789 HITS AT1G01080.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01080.2 CDS ID=AT1G01080.2; Parent=AT1G01080; Name=AT1G01080.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding LOCN Exon COOR C/45503-45559,45646-45954,46044-46145,46373-46789 HITS AT1G01080.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01080.3 CDS ID=AT1G01080.3; Parent=AT1G01080; Name=AT1G01080.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding LOCN Exon COOR C/45610-45954,46044-46145,46376-46789 CLON GATCGAGAAGAAGAAGA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr1 EVAL 100.00 COOR W/16502458-16502474 NOTE 0 0 0 0 0 0 5 1 1 0 0 0 0 0 0 8 0 HITS AT1TE54440[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE54440 transposable_element ID=AT1TE54440; Name=AT1TE54440; Alias=ATGP5 LOCN Intron COOR W/16501404-16501544,16502676-16502940 HITS AT1G43724.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G43724.1 CDS ID=AT1G43724.1; Parent=AT1G43724; Name=AT1G43724.1; index=1; computational_description=copia-like retrotransposon family%2C has a 3.1e-61 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana); Dbxref=locus:1006230742; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN 300-UTR5 COOR C/16501543-16502406 HITS AT1TE54445[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1TE54445 transposable_element ID=AT1TE54445; Name=AT1TE54445; Alias=ATCOPIA21 LOCN Exon COOR C/16501577-16502669 HITS AT1G43725.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G43725.1 CDS ID=AT1G43725.1; Parent=AT1G43725; Name=AT1G43725.1; index=1; computational_description=copia-like retrotransposon family%2C has a 1.2e-107 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element); Dbxref=locus:2825874; Note=transposable_element_gene; locus_type=transposable_element_gene LOCN 1000-Promotor COOR W/16503436-16507468 CLON GATCGAGAAGAAGAAGA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr3 EVAL 100.00 COOR W/3069534-3069550 NOTE 0 0 0 0 0 0 5 1 1 0 0 0 0 0 0 8 0 HITS AT3G09980.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G09980.1 CDS ID=AT3G09980.1; Parent=AT3G09980; Name=AT3G09980.1; Note=ankyrin repeat 30A-like protein (DUF662); curator_summary=Encodes ACIP1%2C a microtubules-associated protein required for bacterial immunity.; conf_class=2; Alias=ACIP1, ACETYLATED INTERACTING PROTEIN 1; computational_description=Family of unknown function (DUF662) %3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36410.2)%3B Has 2513 Blast hits to 2174 proteins in 327 species: Archae - 81%3B Bacteria - 288%3B Metazoa - 1019%3B Fungi - 163%3B Plants - 196%3B Viruses - 10%3B Other Eukaryotes - 756 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:24586161, locus:2100083; locus_type=protein_coding LOCN Exon COOR W/3069358-3069627,3070253-3070363,3070460-3070540,3071071-3071145 CLON GATCGAGAAGAAGAAGA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr3 EVAL 100.00 COOR W/21746108-21746124 NOTE 0 0 0 0 0 0 5 1 1 0 0 0 0 0 0 8 0 HITS AT3G58790.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G58790.1 CDS ID=AT3G58790.1; Parent=AT3G58790; Name=AT3G58790.1; Note=galacturonosyltransferase 15; curator_summary=Encodes a protein with putative galacturonosyltransferase activity.; conf_class=2; symbol=GAUT15; full_name=galacturonosyltransferase 15; computational_description=galacturonosyltransferase 15 (GAUT15)%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 14 (TAIR:AT5G15470.1)%3B Has 1513 Blast hits to 1502 proteins in 296 species: Archae - 0%3B Bacteria - 573%3B Metazoa - 140%3B Fungi - 8%3B Plants - 775%3B Viruses - 2%3B Other Eukaryotes - 15 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16540543, PMID:17237350, locus:2099049; locus_type=protein_coding LOCN 300-UTR5 COOR C/21742455-21742739,21742832-21743134,21743222-21743806,21744130-21744297,21745386-21745429,21745735-21745972 HITS AT3G58795.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT3G58795.1 antisense_lncRNA ID=AT3G58795.1; Parent=AT3G58795; curator_summary=Potential natural antisense gene%2C locus overlaps with AT3G58790; Dbxref=locus:4010713838; Name=AT3G58795.1; description=Natural antisense transcript overlaps with AT3G58790; Note=Natural antisense transcript overlaps with AT3G58790; locus_type=antisense_long_noncoding_rna LOCN Exon COOR W/21745458-21746545 CLON GATCGAGAAGAAGAAGA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr4 EVAL 100.00 COOR W/18439404-18439420 NOTE 0 0 0 0 0 0 5 1 1 0 0 0 0 0 0 8 0 HITS AT4G39750.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G39750.1 CDS ID=AT4G39750.1; Parent=AT4G39750; Name=AT4G39750.1; Note=F-box family protein-like protein; conf_class=9; computational_description=F-box family protein-related%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G28180.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:11516153, locus:2135247; locus_type=protein_coding LOCN Exon COOR W/18439138-18439578 HITS AT4G39753.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT4G39753.1 CDS ID=AT4G39753.1; Parent=AT4G39753; Name=AT4G39753.1; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=1; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39756.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17565617, PMID:18775970, locus:505006571; locus_type=protein_coding LOCN 1000-Promotor COOR W/18440125-18441297 CLON GATCGAGAAGAAGAAGA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr5 EVAL 100.00 COOR W/938226-938242 NOTE 0 0 0 0 0 0 5 1 1 0 0 0 0 0 0 8 0 HITS AT5G03660.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G03660.1 CDS ID=AT5G03660.1; Parent=AT5G03660; Name=AT5G03660.1; Note=transcriptional activator (DUF662); conf_class=2; computational_description=Family of unknown function (DUF662) %3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G09980.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16173598, locus:2144618; locus_type=protein_coding LOCN Exon COOR W/938068-938319,938680-938790,938992-939072,939734-939811 HITS AT5G03660.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G03660.2 CDS ID=AT5G03660.2; Parent=AT5G03660; Name=AT5G03660.2; Note=transcriptional activator (DUF662); conf_class=2; computational_description=Family of unknown function (DUF662) %3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G09980.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16173598, locus:2144618; locus_type=protein_coding LOCN Exon COOR W/938068-938319,938680-938724,938992-939072,939734-939811 HITS AT5G03660.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G03660.3 CDS ID=AT5G03660.3; Parent=AT5G03660; Name=AT5G03660.3; Note=transcriptional activator (DUF662); computational_description=Family of unknown function (DUF662) %3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G09980.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:16173598, locus:2144618; locus_type=protein_coding LOCN Exon COOR W/938068-938319,938680-938790,938992-939087 CLON GATCGAGAAGAAGAAGA[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr5 EVAL 100.00 COOR C/3633688-3633704 NOTE 0 0 0 0 0 0 5 1 1 0 0 0 0 0 0 8 0 HITS AT5G11390.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT5G11390.1 CDS ID=AT5G11390.1; Parent=AT5G11390; Name=AT5G11390.1; Note=WPP domain-interacting protein 1; curator_summary=Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390%2C WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes%2C including nucleocytoplasmic transport%2C spindle formation%2C and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins%2C structurally similar%2C yet clearly distinct from the WIP family%2C that is required for RanGAP nuclear envelop association in root tip cells.; conf_class=2; symbol=WIT1; full_name=WPP domain-interacting protein 1; computational_description=WPP domain-interacting protein 1 (WIT1)%3B BEST Arabidopsis thaliana protein match is: WPP domain-interacting protein 2 (TAIR:AT1G68910.1)%3B Has 69833 Blast hits to 39390 proteins in 2372 species: Archae - 1132%3B Bacteria - 10633%3B Metazoa - 34082%3B Fungi - 6202%3B Plants - 3742%3B Viruses - 161%3B Other Eukaryotes - 13881 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18591351, PMID:18775970, PMID:19617588, PMID:23973298, locus:2148057; locus_type=protein_coding LOCN 300-UTR5 COOR W/3633971-3634568,3634670-3635859,3635960-3636139,3636275-3636418

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