AtTome: Genome Express Database ( Aug. 2, 2016 )

CODE AT1G01100.2 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene CHRO chr1 TITL AT1G01100.2 CDS ID=AT1G01100.2; Parent=AT1G01100; Name=AT1G01100.2; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76%3B Bacteria - 0%3B Metazoa - 858%3B Fungi - 474%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12093376, PMID:14730065, PMID:15010618, PMID:15734919, PMID:15703057, PMID:17934214, PMID:18433157, PMID:18775970, PMID:22195043, locus:2200985; locus_type=protein_coding COOR C/50284-50337,50419-50631,50883-50954 HITS CK120689 [GenBank] TYPE ESTs EVAL e-145 LOCN Exon COOR C/50075-50339,50421-50632,50884-50965,51128-51157 HITS AV826465 [GenBank] TYPE ESTs EVAL e-135 LOCN Exon COOR C/50088-50339,50421-50632,50884-50965,51128-51181 NOTE CB256228 HITS DR303029 [GenBank] TYPE ESTs EVAL 3e-98 LOCN Exon COOR C/50089-50168,50452-50632,50884-50965,51128-51191 NOTE DR370045 BP648753 BP656953 AV795050 BP586021 BP644796 BP645001 BP646654 BP654427 BP655343 CB258426 BP653941 BP576990 BP637169 BP641756 BP649434 BP665140 DR376980 EH920304 EL051375 ES204655 BX840478 DR377427 ES133505 AV542617 EH878787 EL244147 CB263926 BP585175 DR183442 DR377582 AV541434 EL995764 CK120355 DR373214 DR373802 BP567313 BP569576 BP574897 BP575467 BP576648 BP579417 BP579634 BP580994 BP591577 BP595040 BP597769 BP623145 BP623338 BP623586 BP628642 BP633834 BP635904 BP636562 BP637308 BP639724 BP643592 BP644342 BP645200 BP648680 BP650221 BP651781 BP658052 BP658890 BP664304 DR183472 EH906153 EH892862 ES069648 CB262253 BP577478 BP655272 ES122817 CK119637 BP633463 ES067767 CK118034 EG453959 EG453960 EH963419 BP596190 DR183473 BP652778 BP656640 DR183439 DR183443 DR183457 ES049523 DR373222 BP593208 BP647501 BP668066 EL065424 BP637909 BP638228 BP659777 BP668181 BP634664 BP574581 EG503578 HITS R11265 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 97.72 LOCN Exon COOR C/50089-50337,50419-50631,50883-50963,51126-51182 NOTE AY050975 HITS RAFL08-15-M13 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-139 LOCN Exon COOR C/50091-50339,50486-50608 HITS BX840478 [GenBank] [Order] TYPE GSLT cDNA EVAL e-113 LOCN Exon COOR C/50096-50296,50418-50632,50883-50965,51128-51174 HITS BX816971 [GenBank] [Order] TYPE GSLT cDNA EVAL e-125 LOCN Exon COOR C/50113-50339,50421-50632,50884-50965,51128-51176 HITS BX818525 [GenBank] [Order] TYPE GSLT cDNA EVAL e-118 LOCN Exon COOR C/50113-50336,50418-50632,50884-50965,51128-51157 HITS BX841793 [GenBank] [Order] TYPE GSLT cDNA EVAL 2e-94 LOCN Exon COOR C/50113-50335,50418-50632,50883-50965,51129-51169 HITS AY086359 [GenBank] TYPE Community cDNA EVAL 99.82 LOCN Exon COOR C/50117-50337,50419-50631,50883-50963,51064-51108 HITS DR183467 [GenBank] TYPE ESTs EVAL e-114 LOCN Exon COOR C/50156-50335,50418-50632,50884-50965,51129-51185 NOTE EG503579 DR183441 DR183470 DR183445 AV795787 DR183463 BP576230 BP625455 HITS DR183452 [GenBank] TYPE ESTs EVAL e-114 LOCN Exon COOR C/50164-50335,50418-50632,50884-50965,51128-51187 NOTE DR183444 BP626638 BE844776 EH798627 HITS DR372502 [GenBank] TYPE ESTs EVAL e-118 LOCN Exon COOR C/50176-50336,50418-50632,50884-50962,51125-51194 NOTE AA728491 AV534619 EL067665 ES133837 GH718112 DR203101 CF774158 DR203090 ES105448 DR203071 DR203119 EL056298 DR203069 DR203086 DR203108 DR203120 DR203110 DR203118 DR183469 DR203072 DR203093 EL996608 ES185539 DR203088 DR203113 DR203117 DR203066 DR203085 DR315424 ES137464 DR203070 DR203084 DR203094 DR203098 DR203121 BP634195 BP651270 ES059228 ES100179 BP622196 BP642133 BP651992 BP659894 BP665314 DR203075 EH887322 DR183458 DR203116 DR203099 DR203102 CK119207 DR183438 BP631321 DR203083 EH868138 CK118988 ES061279 DR203082 ES013118 BP594706 DR203091 DR203107 CK120122 DR183448 DR203109 DR203074 DR203077 DR203078 DR203080 DR203092 DR203112 ES110165 DR203068 DR203097 DR203104 DR203122 DR203067 ES064137 ES059035 CK118326 DR183455 DR203095 HITS GATCTGGCTAAAGGACT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/50189-50205 NOTE 948 979 687 1877 1058 3176 2558 4123 2622 2077 1615 793 1294 691 260 29 718 HITS GATCAAACAAGTAATAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/50202-50218 NOTE 0 3 0 18 7 0 3 0 0 0 2 0 0 0 0 0 0 HITS DR203105 [GenBank] TYPE ESTs EVAL e-114 LOCN Exon COOR C/50212-50335,50418-50632,50883-50965,51128-51196 NOTE DR203073 DR203081 DR371087 EL174160 DR203087 DR203100 DR203106 ES097944 DR203089 DR203103 DR345255 DR203079 DR345220 DR345227 DR345299 DR345305 DR183460 DR345231 DR345234 DR345340 DR345354 DR183464 DR345225 DR345176 ES187419 DR345230 EH896331 ES160212 ES064675 ES059823 ES081529 ES065015 DR345217 DR183462 DR345196 DR183461 DR345226 AV536016 DR183446 DR345240 DR345281 DR345239 DR345257 DR345353 DR183440 DR183447 DR345310 DR345364 DR345331 EH890571 EL203145 DR345307 ES169918 DR345272 EL996494 DR345267 ES067268 DR345233 DR183456 EL072799 EL035022 ES170975 ES175630 EH859658 EH866772 ES170500 ES181661 DR345221 ES118895 ES112062 DR345329 EL985143 EL324478 BP816855 ES140228 ES011850 BP815940 BP805395 BP839086 ES104251 BP815985 EH897642 DR345192 DR345184 DR345351 DR345188 DR345208 BP830626 DR345236 DR345199 DR345292 DR345316 DR345252 BP819138 BP819536 DR345360 EH848232 EL030593 DR203076 ES203647 HITS U11265 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN Exon COOR C/50253-50337,50419-50631,50883-50954 NOTE AY091176 HITS G11265 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR C/50253-50337,50419-50631,50883-50954 NOTE U11265 AY091176 pENTR_Sfi HITS ES153752 [GenBank] TYPE ESTs EVAL 1e-20 LOCN Exon COOR W/50290-50339,50421-50466 HITS BP812696 [GenBank] TYPE ESTs EVAL e-109 LOCN Exon COOR C/50291-50336,50416-50632,50884-50965,51128-51184 NOTE BP832733 EH898488 DR345178 HITS 261578_at [gAtlas] TYPE Affy Probes EVAL e-118 LOCN Exon COOR C/50293-50336,50418-50632,50884-50954 HITS DR345207 [GenBank] TYPE ESTs EVAL e-118 LOCN Exon COOR C/50293-50336,50418-50632,50884-50965,51128-51187 NOTE DR345210 DR345317 DR345357 HITS BP836713 [GenBank] TYPE ESTs EVAL e-113 LOCN Exon COOR C/50294-50336,50418-50632,50884-50965,51128-51193 NOTE DR345271 DR183465 DR345183 BP823118 ES011414 BP831604 BP843883 DR255937 BP812196 BP833092 BP866537 ES198802 BP815348 BP817508 BP833991 BP838604 DR183451 DR345219 BP813384 BP828975 BP814243 BP835923 BP829458 AA712509 BP819741 T42111 BP818975 BP822056 BP826782 BP834640 BP860578 HITS GATCTCATTTTGGTATT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Intron COOR C/50342-50358 NOTE 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 HITS DR203114 [GenBank] TYPE ESTs EVAL e-112 LOCN Exon COOR C/50417-50632,50884-50965,51128-51196 NOTE DR345222 EL240545 BP814402 ES165691 ES129845 ES119669 BP653931 BP802869 BP804030 BP818377 BP820681 BP821880 BP827040 BP827053 BP830305 BP833658 BP833708 BP836092 BP838367 BP848565 BP850988 BP855125 DR183466 DR203111 DR345309 EL065885 BP854995 DR345359 BP838692 BP826237 BP653939 EH887177 EL282417 ES103641 DR345346 ES167384 EL034531 EL315161 HITS EG501916 [GenBank] TYPE ESTs EVAL e-107 LOCN Exon COOR C/50437-50632,50884-50965,51128-51199 NOTE EG501917 ES182779 EL177675 EL992171 EL992329 EL995834 ES088148 ES050513 ES030547 ES033626 DR211234 DR370723 DR345245 EH858407 DR183450 DR345223 DR345232 DR345235 DR345243 DR345209 DR196271 DR345194 GH718111 DR317036 DR255936 ES016077 ES021461 DR345224 EH817750 DR183471 DR345195 DR345218 DR345228 DR345320 CK119770 DR345216 EL298566 DR183453 DR345356 ES215879 ES123663 DR345198 ES104133 EL306810 EH944977 EL092124 EL176847 ES166802 EL131090 ES059175 EL283008 EL283860 DR345229 EL993011 ES020329 BP841386 T43422 ES058427 ES144920 ES031556 EH881930 ES009832 DR229009 DR183449 DR183454 DR183468 DR203096 DR203115 DR303028 DR345175 DR345177 DR345179 DR345180 DR345181 DR345182 DR345185 DR345186 DR345187 DR345189 DR345190 DR345191 DR345193 DR345200 DR345201 DR345203 DR345204 DR345205 DR345206 DR345211 DR345212 DR345213 DR345214 DR345215 DR345237 DR345238 DR345241 DR345242 DR345246 DR345247 DR345248 HITS GATCTCATCATGAACGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/50516-50532 NOTE 268 208 207 417 251 928 915 1040 664 1341 527 127 223 191 252 0 0 HITS GATCAGTCACGTTACGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/50529-50545 NOTE 0 0 0 0 0 4 2 0 8 0 0 0 0 0 0 0 0 HITS GATCCTCGAGGACGAGG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/50897-50913 NOTE 0 0 0 0 0 15 33 9 16 22 22 0 20 11 78 5 54 HITS GATCATAACAGCGTAGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/50910-50926 NOTE 2 5 15 28 9 7 19 3 7 23 14 0 56 32 231 42 6 HITS DR345258 [GenBank] TYPE ESTs EVAL 9e-31 LOCN Exon COOR C/50920-50962,51125-51191 NOTE DR345249 DR345251 DR345253 DR345254 DR345256 DR345250 DR345259 DR345260 DR345261 DR345262 DR345263 DR345264 DR345265 DR345266 DR345268 DR345269 DR345270 DR345273 DR345274 DR345275 DR345276 DR345277 DR345278 DR345279 DR345280 DR345282 DR345283 DR345285 DR345286 DR345287 DR345288 DR345289 DR345290 DR345291 DR345293 DR345294 DR345295 DR345296 DR345297 DR345298 DR345300 DR345301 DR345302 DR345303 DR345304 DR345306 DR345308 DR345311 DR345312 DR345313 DR345314 DR345315 DR345318 DR345321 DR345322 DR345323 DR345324 DR345325 DR345326 DR345327 DR345328 DR345330 DR345332 DR345333 DR345334 DR345335 DR345336 DR345337 DR345338 DR345339 DR345341 DR345342 DR345343 DR345344 DR345345 DR345347 DR345348 DR345349 DR345350 DR345352 DR345355 DR345358 DR345361 DR345362 DR345284 EG481405 EG481406 DR183459 DR345319 DR345202 EL326969 EL186558 ES025614 EH842137 HITS EH893714 [GenBank] TYPE ESTs EVAL 6e-31 LOCN 300-UTR5 COOR C/51125-51195 NOTE EH925429 EH926618 EH992669 EH993571 EL072872 EL176378 EL324100 ES177128 ES058389 ES012214 ES174549 ES205817 ES134239 ES069520 ES093957 ES121775 ES188004 ES022248 ES121358 EL973337 DR345197 DR345244 DR345363 EL101442 HITS GATCGAAAATGCTTTTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/51136-51152 NOTE 10 2 5 4 1 6 6 1 0 0 21 3 0 5 65 2 0 HITS CATGTAGTTGTAGA [About SAGE] TYPE SAGE Target EVAL 100 LOCN 1000-Promotor COOR W/51623-51636

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