AtTome: Genome Express Database ( Aug. 2, 2016 )


CODE AT1G01090.1 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene CHRO chr1 TITL AT1G01090.1 CDS ID=AT1G01090.1; Parent=AT1G01090; Name=AT1G01090.1; Note=pyruvate dehydrogenase E1 alpha; curator_summary=pyruvate dehydrogenase E1 alpha subunit; conf_class=2; symbol=PDH-E1 ALPHA; full_name=pyruvate dehydrogenase E1 alpha; computational_description=pyruvate dehydrogenase E1 alpha (PDH-E1 ALPHA)%3B FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity%3B INVOLVED IN: oxidation reduction%2C glycolysis%2C metabolic process%3B LOCATED IN: chloroplast%2C plastid%2C chloroplast envelope%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Dehydrogenase%2C E1 component (InterPro:IPR001017)%2C Pyruvate dehydrogenase (acetyl-transferring) E1 component%2C alpha subunit%2C subgroup y (InterPro:IPR017597)%3B BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1)%3B Has 10065 Blast hits to 10059 proteins in 1888 species: Archae - 130%3B Bacteria - 6136%3B Metazoa - 517%3B Fungi - 241%3B Plants - 224%3B Viruses - 0%3B Other Eukaryotes - 2817 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9393637, PMID:12084821, PMID:12805597, PMID:13677473, PMID:14576160, PMID:14682612, PMID:15052571, PMID:15173569, PMID:15561727, PMID:15703057, PMID:16553896, PMID:17419836, PMID:18650403, PMID:18616834, PMID:18689444, PMID:18775970, PMID:23505340, PMID:24023856, locus:2200980; locus_type=protein_coding COOR C/47705-47982,48075-48852,48936-49166 HITS BP622252 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/47475-47836 NOTE DR348209 HITS DR383189 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/47483-47983,48076-48200 NOTE DR381326 BP634007 AV816207 BP569374 BP596480 BP616422 BP629438 BP670010 AV542850 EG462516 EG462517 EH919913 EH922338 AV798622 AV808865 BP644356 BP653262 ES138293 AV540196 EG500047 BP577167 DR373474 EL313824 AV787194 DR193817 AV547397 AV522256 EH858983 EL091887 EL231147 BP567044 BP583832 BP605494 BP607249 BP640268 AV539704 AV557740 AV559265 DR348210 EL174215 DR193816 BE521558 HITS RAFL09-16-O16 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.27 LOCN Exon COOR C/47483-47982,48075-48852,48936-49279 HITS R13800 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.94 LOCN Exon COOR C/47498-47982,48075-48852,48936-49222,49207-49278 NOTE AY052721 HITS RAFL09-16-O16 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-170 LOCN Exon COOR C/47513-47890 HITS RAFL09-56-N18 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/47513-47901 HITS RAFL06-74-I08 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/47516-47899 HITS BX835986 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/47523-47995,48077-48351 NOTE BP606919 BP636706 BP659781 AV559839 EL993742 AV559742 BP643855 BP660202 BP575870 BP628250 AV563516 EH856422 EH859879 DR376031 EL313769 BP596295 BP605176 AV522098 BP574275 DR343170 EL307123 EH862718 EH886591 HITS BX815342 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/47541-47982,48074-48853,48938-49272 HITS BX835986 [GenBank] [Order] TYPE GSLT cDNA EVAL e-164 LOCN Exon COOR W/47588-47990,48076-48351 HITS U80185 [GenBank] TYPE Community cDNA EVAL 97.40 LOCN Exon COOR C/47597-47982,48075-48852,48936-49221,49208-49273 HITS DR376884 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/47598-47983,48079-48365 NOTE DR380661 DR381624 EH939904 EL987593 EL996020 EG448091 EH940966 EL233898 EG448133 Z48416 DR343169 EL107819 EL199598 BP605557 BP612762 AV535866 DR348206 AV545292 EL119096 EL008595 EL115570 EL310145 EL146557 BP812520 EL306346 EH975205 EL068539 EL153075 EL097947 EL281691 HITS BX815751 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/47621-47982,48075-48853,48939-49269 HITS BX818597 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/47621-47982,48075-48853,48937-49226 HITS BX815365 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/47634-47982,48073-48853,48938-49248 HITS BX813802 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/47646-47981,48072-48853,48933-49250 HITS U13800 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN Exon COOR C/47705-47982,48075-48852,48936-49166 NOTE AY063724 HITS G13800 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR C/47705-47982,48075-48852,48936-49166 NOTE U13800 AY063724 pENTR_Sfi HITS 261583_at [gAtlas] TYPE Affy Probes EVAL e-171 LOCN Exon COOR C/47708-47982,48075-48378 HITS EG445433 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/47738-47982,48075-48584 NOTE EL140442 CF773626 CF773635 EH882018 EL088005 ES029481 EL294109 EH864819 EG447147 EL263201 EL292874 DR346974 EH847183 EH896229 EH905583 EL261734 EH895580 ES062337 ES086699 EH864038 ES078460 ES053203 EL257962 EL231011 EL223139 EG418262 EH917300 EL175930 EL192299 EL027493 CB261062 EL338704 EG445432 ES094288 ES059737 EH846729 EH941146 HITS GATCCAAAAGGATTTGG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/47772-47788 NOTE 124 635 281 237 282 131 269 475 553 139 228 24 58 129 62 94 200 HITS GATCAGCAAACACATTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/47785-47801 NOTE 3 0 0 0 0 1 1 1 4 2 12 15 12 6 37 5 3 HITS BX840037 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/48075-48853,48937-49222 NOTE EL195243 EL300123 EL214395 EL035656 EL306814 EL270299 DR348205 HITS GATCCCGATGAGCTCCG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/48083-48099 NOTE 0 0 0 4 0 3 3 11 7 9 0 0 0 1 7 1 0 HITS BX840037 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/48085-48853,48937-49222 HITS GATCAGCCAAGGAGTGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/48096-48112 NOTE 0 0 0 0 0 12 0 15 0 7 0 0 0 1 29 0 0 HITS BX839733 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/48198-48853,48935-49259 NOTE EH954461 AI993673 EH932650 DR348212 ES181332 HITS BX839733 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/48204-48853,48935-49259 HITS BX839266 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/48224-48853,48938-49270 NOTE AV554012 BE524629 ES105039 EH904503 DR348201 DR348222 EL241737 DR348208 N65566 EH966602 EL267954 DR348204 EL085611 EG446174 EH814508 BE520696 N65567 ES082906 EL214742 EL218708 EL984157 EL084549 ES119491 BE525399 EH903340 BE520815 HITS CATGAACACCAGGC [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/48225-48238 HITS BX839266 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/48260-48853,48938-49270 HITS DR348219 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/48459-48853,48942-49283 NOTE EG423996 BE520816 EH948484 EL094491 BE526130 EL291203 EL969357 EL208824 EH883751 EL045603 BE523776 DR348215 EL150464 EL293476 DR348396 AV533032 ES088750 EH897429 EL026272 EL264705 DR348207 BE527594 EH796202 ES079828 EL099211 AV827561 EL199576 CB255771 BX840016 EL212728 AV824670 EH905422 EL124864 EH941202 EL260021 DR348217 DR348220 BP812894 DR348221 EH798368 DR348211 EH916324 DR348218 EH832951 EL163557 EH854437 Z48417 BP838981 BE525392 BP856884 HITS GATCCACCTTGGCCTCT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/48560-48576 NOTE 0 0 0 0 0 0 0 5 13 0 0 1 0 7 11 0 0 HITS BX840016 [GenBank] [Order] TYPE GSLT cDNA EVAL e-110 LOCN Exon COOR C/48654-48852,48935-49156 HITS GATCTTTCGAAGACATG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/48784-48800 NOTE 0 0 0 0 0 3 0 4 3 1 0 0 0 0 2 0 0 HITS DR343171 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/48792-48848,48936-49286 NOTE BP844363 BP849187 BP816336 BP851505 BP821522 EH870568 EL140961 ES077188 BP797917 BP810724 EL298821 BP857454 DR348203 EL338277 BP864111 BP810098 BP825152 BP837313 BP830775 BE521557 EH988511 EL109457 EL339169 DR348216 BE525391 BE525393 BE529362 DR346977 DR348202 EL202451 EH956639 EL091120 EL129579 AV829843 EL187528 EL269628 EL313754 DR343172 EH953753 EL207008 DR346976 EL274210 EL083618 EG517799 EG517783 EG517784 EG517800 EH897919 EH973857 EL047850 EL058492 EL068676 DR348224 DR348213 EL179846 AV550023 BE525666 BE527603 BE529180 DR348395 DR295747 DR346975 DR348223 DR348214 HITS GATCTCCCGTCGTCTCT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/48984-49000 NOTE 0 0 0 0 0 1 1 2 1 0 11 0 0 0 0 0 0 HITS GATCGACGGGTGGCGTT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/48997-49013 NOTE 0 0 0 0 0 1 1 0 0 0 0 0 1 0 6 0 0 HITS GATCCACCCGTTCCCTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/49038-49054 NOTE 0 0 0 0 0 0 0 0 3 0 14 0 0 0 2 0 0 HITS GATCCGAGGAAAGAAGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/49051-49067 NOTE 0 0 0 0 0 6 0 0 5 0 0 0 0 10 32 0 0 HITS GATCCGATTGGCTCCTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/49070-49086 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 HITS GATCGGGAGCAAGAGAC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/49083-49099 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 HITS GATCCCATGAGAATCGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/49098-49114 NOTE 0 0 0 0 0 1 0 0 0 7 0 0 0 3 0 0 0 HITS GATCCATGCAGAGGAAC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/49111-49127 NOTE 0 0 0 0 0 0 0 85 0 0 0 0 0 0 0 0 0 HITS CATGCAGAGGAACC [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/49115-49128 HITS CK120689 [GenBank] TYPE ESTs EVAL e-145 LOCN 1000-Promotor COOR C/50075-50339,50421-50632,50884-50965,51128-51157 HITS AV826465 [GenBank] TYPE ESTs EVAL e-135 LOCN 1000-Promotor COOR C/50088-50339,50421-50632,50884-50965,51128-51181 NOTE CB256228 HITS DR303029 [GenBank] TYPE ESTs EVAL 3e-98 LOCN 1000-Promotor COOR C/50089-50168,50452-50632,50884-50965,51128-51191 NOTE DR370045 BP648753 BP656953 AV795050 BP586021 BP644796 BP645001 BP646654 BP654427 BP655343 CB258426 BP653941 BP576990 BP637169 BP641756 BP649434 BP665140 DR376980 EH920304 EL051375 ES204655 BX840478 DR377427 ES133505 AV542617 EH878787 EL244147 CB263926 BP585175 DR183442 DR377582 AV541434 EL995764 CK120355 DR373214 DR373802 BP567313 BP569576 BP574897 BP575467 BP576648 BP579417 BP579634 BP580994 BP591577 BP595040 BP597769 BP623145 BP623338 BP623586 BP628642 BP633834 BP635904 BP636562 BP637308 BP639724 BP643592 BP644342 BP645200 BP648680 BP650221 BP651781 BP658052 BP658890 BP664304 DR183472 EH906153 EH892862 ES069648 CB262253 BP577478 BP655272 ES122817 CK119637 BP633463 ES067767 CK118034 EG453959 EG453960 EH963419 BP596190 DR183473 BP652778 BP656640 DR183439 DR183443 DR183457 ES049523 DR373222 BP593208 BP647501 BP668066 EL065424 BP637909 BP638228 BP659777 BP668181 BP634664 BP574581 EG503578 HITS R11265 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 97.72 LOCN 1000-Promotor COOR C/50089-50337,50419-50631,50883-50963,51126-51182 NOTE AY050975 HITS RAFL08-15-M13 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-139 LOCN 1000-Promotor COOR C/50091-50339,50486-50608 HITS BX840478 [GenBank] [Order] TYPE GSLT cDNA EVAL e-113 LOCN 1000-Promotor COOR C/50096-50296,50418-50632,50883-50965,51128-51174 HITS BX816971 [GenBank] [Order] TYPE GSLT cDNA EVAL e-125 LOCN 1000-Promotor COOR C/50113-50339,50421-50632,50884-50965,51128-51176 HITS BX818525 [GenBank] [Order] TYPE GSLT cDNA EVAL e-118 LOCN 1000-Promotor COOR C/50113-50336,50418-50632,50884-50965,51128-51157 HITS BX841793 [GenBank] [Order] TYPE GSLT cDNA EVAL 2e-94 LOCN 1000-Promotor COOR C/50113-50335,50418-50632,50883-50965,51129-51169 HITS AY086359 [GenBank] TYPE Community cDNA EVAL 99.82 LOCN 1000-Promotor COOR C/50117-50337,50419-50631,50883-50963,51064-51108 HITS DR183467 [GenBank] TYPE ESTs EVAL e-114 LOCN 1000-Promotor COOR C/50156-50335,50418-50632,50884-50965,51129-51185 NOTE EG503579 DR183441 DR183470 DR183445 AV795787 DR183463 BP576230 BP625455 HITS DR183452 [GenBank] TYPE ESTs EVAL e-114 LOCN 1000-Promotor COOR C/50164-50335,50418-50632,50884-50965,51128-51187 NOTE DR183444 BP626638 BE844776 EH798627

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
© SIGnAL 2000-2016 | Home | About Us | Microarray | FL-cDNA | SALK T-DNA | Contact Us |