AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON DR376884[GenBank] 
TYPE ESTs
CHRO chr1
EVAL 0.0
COOR C/47598-47983,48079-48365
NOTE DR380661 DR381624 EH939904 EL987593 EL996020 EG448091 EH940966 EL233898 EG448133 Z48416 DR343169 EL107819 EL199598 BP605557 BP612762 AV535866 DR348206 AV545292 EL119096 EL008595 EL115570 EL310145 EL146557 BP812520 EL306346 EH975205 EL068539 EL153075 EL097947 EL281691 

HITS AT1G01080.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01080.1 CDS ID=AT1G01080.1; Parent=AT1G01080; Name=AT1G01080.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding LOCN 1000-Promotor COOR C/45503-45559,45646-45954,46044-46145,46376-46789 HITS AT1G01080.2[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01080.2 CDS ID=AT1G01080.2; Parent=AT1G01080; Name=AT1G01080.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding LOCN 1000-Promotor COOR C/45503-45559,45646-45954,46044-46145,46373-46789 HITS AT1G01080.3[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01080.3 CDS ID=AT1G01080.3; Parent=AT1G01080; Name=AT1G01080.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding LOCN 1000-Promotor COOR C/45610-45954,46044-46145,46376-46789 HITS AT1G01090.1[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [AtGene Express] [AtGDB View] [e-FP Browser] [YE Clone] [AthaMap] [Phosphat] [Methylome]
[Genevestigator] [UToronto BAR Expression Angler] [Araport ] TYPE Gene TITL AT1G01090.1 CDS ID=AT1G01090.1; Parent=AT1G01090; Name=AT1G01090.1; Note=pyruvate dehydrogenase E1 alpha; curator_summary=pyruvate dehydrogenase E1 alpha subunit; conf_class=2; symbol=PDH-E1 ALPHA; full_name=pyruvate dehydrogenase E1 alpha; computational_description=pyruvate dehydrogenase E1 alpha (PDH-E1 ALPHA)%3B FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity%3B INVOLVED IN: oxidation reduction%2C glycolysis%2C metabolic process%3B LOCATED IN: chloroplast%2C plastid%2C chloroplast envelope%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Dehydrogenase%2C E1 component (InterPro:IPR001017)%2C Pyruvate dehydrogenase (acetyl-transferring) E1 component%2C alpha subunit%2C subgroup y (InterPro:IPR017597)%3B BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1)%3B Has 10065 Blast hits to 10059 proteins in 1888 species: Archae - 130%3B Bacteria - 6136%3B Metazoa - 517%3B Fungi - 241%3B Plants - 224%3B Viruses - 0%3B Other Eukaryotes - 2817 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9393637, PMID:12084821, PMID:12805597, PMID:13677473, PMID:14576160, PMID:14682612, PMID:15052571, PMID:15173569, PMID:15561727, PMID:15703057, PMID:16553896, PMID:17419836, PMID:18650403, PMID:18616834, PMID:18689444, PMID:18775970, PMID:23505340, PMID:24023856, locus:2200980; locus_type=protein_coding LOCN Exon COOR C/47705-47982,48075-48852,48936-49166

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
© SIGnAL 2000-2016 | Home | About Us | Microarray | FL-cDNA | SALK T-DNA | Contact Us |