Arabidopsis Transcriptome Genomic Express Database ( Feb. 7, 2014 )

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Reference to cite for transcriptome tiling array data and SSP ORF clones.

[Transcriptome] Kayoko Yamada, Jun Lim, Joseph M. Dale, Huaming Chen, Paul Shinn, Curtis J. Palm, Audrey M. Southwick, Hank C. Wu, Christopher Kim, Michelle Nguyen, Paul Pham, Rosa Cheuk, George Karlin-Newmann, Shirley X. Liu, Bao Lam, Hitomi Sakano, Troy Wu, Guixia Yu, Molly Miranda, Hong L. Quach, Matthew Tripp, Charlie H. Chang, Jeong M. Lee, Mitsue Toriumi, Marie M. H. Chan, Carolyn C. Tang, Courtney S. Onodera, Justine M. Deng, Kenji Akiyama, Yasser Ansari, Takahiro Arakawa, Jenny Banh, Fumika Banno, Leah Bowser, Shelise Brooks, Piero Carninci, Qimin Chao, Nathan Choy, Akiko Enju, Andrew D. Goldsmith, Mani Gurjal, Nancy F. Hansen, Yoshihide Hayashizaki, Chanda Johnson-Hopson, Vickie W. Hsuan, Kei Iida, Meagan Karnes, Shehnaz Khan, Eric Koesema, Junko Ishida, Paul X. Jiang, Ted Jones, Jun Kawai, Asako Kamiya, Cristina Meyers, Maiko Nakajima, Mari Narusaka, Motoaki Seki, Tetsuya Sakurai, Masakazu Satou, Racquel Tamse, Maria Vaysberg, Erika K. Wallender, Cecilia Wong, Yuki Yamamura, Shiaulou Yuan, Kazuo Shinozaki, Ronald W. Davis, Athanasios Theologis, and Joseph R. Ecker (2003) Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome Science 302: 842-846.Abstract ] [ Full Text ] [ Supporting data ] [ Supplementary GEO Analysis Files ]

[Exosome] Julia A. Chekanova*, Brian D. Gregory*, Sergei V. Reverdatto, Huaming Chen, Ravi Kumar, Tanya Hooker, Junshi Yazaki, Pinghua Li, Nikolai Skiba, Qian Peng, Jose Alonso, Vladimir Brukhin, Ueli Grossniklaus, Joseph R. Ecker* and Dmitry A. Belostotsky* Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome Cell, Vol 131, 1340-1353, 28 December 2007 [Summary] [PDF] [Full Text] [Supplemental Data]

[At-TAX] Laubinger S., Zeller G., Henz S.R., Sachsenberg T., Widmer C.K., Naouar N., Vuylsteke M., Schölkopf B., Rätsch G. and Weigel D. (2008) At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana Genome Biology 2008, 9:R112 [Summary] [Full Text] [PDF] [Supplemental Data]

[Methylome] Xiaoyu Zhang, Junshi Yazaki, Ambika Sundaresan, Shawn Cokus, Simon W.-L. Chan, Huaming Chen, Ian R. Henderson, Paul Shinn, Matteo Pellegrini, Steve E. Jacobsen, and Joseph R. Ecker Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis CELL V126-6, 09/22/2006, P1189-1201 [Full Text] [SUPPLEMENTARY DATA] [Materials and Data]


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