RiceGE: Genome Express Database ( Oct. 6, 2010 )


CODE Os01g01115 [Seq] [RiceGE6]  [RiceGE6 Text] [RiceGE v5] [About MSU Rice Annotation v 6.1] 
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene CHRO chr01 TITL Os01g01115.1 pentatricopeptide, putative COOR W/57658-60090 HITS At5g53850 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 1e-66 LOCN Exon COOR W/56627-56644,61391-61429,61470-61495,61508-61541,61583-61651,61757-61772,61782-61848,61856-61872,62000-62038,62136-62153,62235-62268,62326-62354 HITS ACGACGGCGACCCTGCG [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR C/56643-56659 NOTE 0 0 2 0 0 0 HITS M0036739 [Seq] [About TRIM FST] [GenBank] [iSect Primer] [Order or Feedback] TYPE TRIM T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/56914-57442 HITS TCTTCCTCGACGACGGC [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR W/56922-56938 NOTE 0 0 3 0 0 0 HITS CGCCGTCGTCGAGGAAG [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR C/56923-56939 NOTE 0 0 2 0 0 0 HITS ATCTTATTTGACCGTGG [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR C/57025-57041 NOTE 5 0 0 0 0 0 HITS AAATCTTATTTGACCGT [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR C/57027-57043 NOTE 0 15 0 1 0 0 HITS GGATTTAGATGAAACAT [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR W/57105-57121 NOTE 0 0 0 0 1 0 HITS SAO3E04 [Seq] [GenBank] [About Genoplante Rice Tag Line] [iSect Primer] TYPE Genoplante T-DNA EVAL 6e-06 LOCN 1000-Promotor COOR C/57260-57284 HITS BT053830 [GenBank] TYPE Maize cDNA EVAL 0.0 LOCN Exon COOR C/57439-57542,71731-71807,71854-71903,71956-72106,71979-71993,71990-72035,72137-72160,72376-72510,72378-72415,72383-72397,72423-72466,72432-72453,72693-72745,72780-72921,72884-72901,73644-73732,73695-73713,73902-73981,74504-74550,74549-74561,74597-74689,74734-74854,74823-74911,74856-74975,74866-74877,75019-75091,75047-75068,75072-75084,75138-75208,75232-75286,75271-75351,75992-76010,76066-76087,76129-76151,76181-76201,76191-76207,76289-76320,89805-89825 HITS BT033475 [GenBank] TYPE Maize cDNA EVAL e-126 LOCN Exon COOR W/57668-57715,57751-57870,58127-58214,58162-58325,58528-58931,58932-58957,58976-59060,59000-59151,59364-59476,59699-60039,61583-61597,89876-89887 HITS GGCGGCGACATTGGCGA [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN Exon COOR C/57689-57705 NOTE 0 0 3 0 0 0 HITS BT084853 [GenBank] TYPE Maize cDNA EVAL 6e-56 LOCN Exon COOR C/57713-57755,57756-57829,57776-57825,57951-58004,58038-58177,58306-58325,58629-58783,58646-58720,58788-58922,58901-58948,58950-59033 HITS At5g09950 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-150 LOCN Exon COOR W/57733-57796,58153-58300,58312-58326,58385-58472,58481-58528,58630-58706,58856-58869,58867-59000,58907-58918,59116-59175,59266-59346,59423-59475,59527-59655,59913-59937,59935-59986,59990-60098,60096-60140 HITS At3g02010 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 0.0 LOCN Exon COOR W/57745-57846,58056-58129,58130-58173,58147-58620,58337-58404,58465-58523,58621-58712,58713-58726,58829-58894,58950-59005,59342-59499,59567-59577,59575-59746,60089-60261 HITS At4g37170 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-144 LOCN Exon COOR W/57805-57886,58233-58246,58369-58459,58643-58684,58687-59154,58783-58838,58931-58945,58946-58995,58960-58974,59697-59898,60089-60545 HITS At2g41080 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-137 LOCN Exon COOR W/57826-57873,58465-58725,58490-58584,59237-59271,59269-59542,59708-59852,60089-60187 HITS At1g68930 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-162 LOCN Exon COOR W/57841-57911,57914-57951,58126-58201,58503-58525,58552-59064,58942-59034,59423-59637,60089-60299 HITS At3g47840 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-122 LOCN Exon COOR W/57880-57936,58123-58279,58123-58371,58301-58346,58438-58470,58675-59043,58678-58728,58838-58857,59000-59107,59000-59031,59044-59136,59453-59529,59559-59619,59712-59749,59765-59991 HITS At3g20730 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 2e-89 LOCN Exon COOR W/58126-58384,58900-58952,58922-58973,59056-59187,59485-59546,59669-59731 HITS At1g20230 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-151 LOCN Exon COOR W/58129-58316,58540-58551,58843-59013,58855-59266,60087-60421 HITS At2g21090 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-105 LOCN Exon COOR W/58162-58306,58456-58485,58465-58507,58610-58655,58789-58907,58811-58830,58843-58917,59012-59085,59046-59071,59158-59351,59406-59488,59726-59912 HITS At4g14850 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-153 LOCN Exon COOR W/58168-58534,59039-59144,59039-59218,59192-59323,59254-59532,59601-59632,59823-59951,60089-60279 HITS At1g03540 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 2e-97 LOCN Exon COOR W/58225-58316,58327-58371,58522-58563,58675-58769,58675-58721,58966-59146,59030-59095,59530-59587 HITS BT084741 [GenBank] TYPE Maize cDNA EVAL e-121 LOCN Exon COOR C/58346-58420,58571-58861,59390-59517,59518-59730,59748-59824,60026-60040,60074-60092 HITS At1g28690 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 5e-83 LOCN Exon COOR W/58420-58497,58708-58722,58732-58800,58915-59129,58956-58988,59104-59122,59292-59361,59587-59623 HITS BT064027 [GenBank] TYPE Maize cDNA EVAL e-108 LOCN Exon COOR W/58762-59083,59177-59315,59342-59386,59721-59800,59821-59852,59929-59982,60089-60142,81858-81872,89640-89659

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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