RiceGE: Genome Express Database ( Jan. 16, 2018 )


CODE Os01g01010.1 [Seq] [RiceGE7]  [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7] 
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene CHRO chr01 TITL LOC_Os01g01010.1 CDS TBC domain containing protein, expressed COOR W/3449-3616,4357-4455,5457-5560,7136-7944,8028-8150,8232-8320,8408-8608,9210-9617,10104-10187,10274-10297 HITS SAB2G05 [Seq] [GenBank] [About Genoplante Rice Tag Line] [iSect Primer] TYPE Genoplante T-DNA EVAL 100.00 LOCN 1000-Promotor COOR C/2784-2937 HITS PFG_1C-02628.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 66.67 LOCN 1000-Promotor COOR W/2925-3095 HITS PFG_1C-03428.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 45.49 LOCN 1000-Promotor COOR W/2925-3041 HITS J075199P03 [GenBank] [About KOME] [Order from RGRC] [Microarray] TYPE KOME FL-cDNA EVAL 99.19 LOCN Exon COOR C/2983-3268,3354-3616,4357-4455,5457-5560,7136-7944,8028-8150,8232-8320,8408-8608,9210-9617,10102-10187,10274-10430,10504-10815 NOTE AK242339.1 HITS RMD_03Z11FA85 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 63.86 LOCN 1000-Promotor COOR W/3001-3028,3075-3214,3215-3364 HITS RMD_TTL-03Z11FA85_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 61.39 LOCN 1000-Promotor COOR W/3001-3028,3075-3214,3215-3364 HITS RMD_03Z11FA76 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 59.01 LOCN 1000-Promotor COOR W/3086-3253,3272-3463 HITS RMD_TTL-03Z11FA76_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 57.05 LOCN 1000-Promotor COOR W/3086-3253,3272-3463 HITS RMD_03Z11FA84 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 38.46 LOCN Intron COOR C/3696-3735 HITS RMD_TTL-03Z11FA84_NTLB5-1 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 32.26 LOCN Intron COOR C/3696-3735 HITS FN971-S.SNP.1:3769 [About Kitaake Mutants] [Mutant FN971-S Details] [Order Seed] TYPE Kitaake SNP EVAL 0 LOCN Intron COOR W/3769-3769 NOTE FN971-S Single Base Substitution G-C INTRON HET SNo: 875, Mutant_ID: FN971-S, Generation: M2, Mutations: 50, Genes: 12, Seed availability: Yes. HITS FN633-S.Del.1:4593 [About Kitaake Mutants] [Mutant FN633-S Details] [Order Seed] TYPE Kitaake Deletion EVAL 0 LOCN Intron COOR W/4593-4594 NOTE FN633-S Deletion 1 SNo: 598, Mutant_ID: FN633-S, Generation: M2, Mutations: 66, Genes: 23, Seed availability: Yes. HITS RMD_03Z11DF31 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 50.17 LOCN Intron COOR W/6631-6924 HITS RMD_TTL-03Z11DF31_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 48.50 LOCN Intron COOR W/6631-6924 HITS RMD_05Z11HM81 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 17.27 LOCN Intron COOR W/6851-6921 HITS RMD_TTL-05Z11HM81_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 16.47 LOCN Intron COOR W/6851-6921 HITS FN-159.Del.1:8001 [About Kitaake Mutants] [Mutant FN-159 Details] [Order Seed] TYPE Kitaake Deletion EVAL 0 LOCN Exon COOR W/8001-247000 NOTE FN-159 Deletion 239000 LOC_Os01g01010 TBC domain containing protein, expressed , LOC_Os01g01019 expressed protein, LOC_Os01g01030 monocopper oxidase, putative, expressed, LOC_Os01g01040 expressed protein, LOC_Os01g01050 R3H domain containing protein, expressed, LOC_Os01g01060 40S ribosomal protein S5, putative, expressed, LOC_Os01g01070 expressed protein, LOC_Os01g01080 decarboxylase, putative, expressed, LOC_Os01g01090 retrotransposon protein, putative, unclassified, expressed, LOC_Os01g01100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed, LOC_Os01g01110 expressed protein, LOC_Os01g01115 pentatricopeptide, putative, expressed, LOC_Os01g01120 enolase-phosphatase E1, putative, expressed, LOC_Os01g01130 snurportin-1, putative, expressed, LOC_Os01g01140 expressed protein, LOC_Os01g01150 RNA recognition motif, putative, expressed, LOC_Os01g01160 heat shock protein DnaJ, putative, expressed, LOC_Os01g01170 expressed protein, LOC_Os01g01180 expressed protein, LOC_Os01g01190 phosphoesterase family protein, putative, expressed, LOC_Os01g01200 retrotransposon protein, putative, unclassified, expressed, LOC_Os01g01210 retrotransposon protein, putative, unclassified, LOC_Os01g01230 transposon protein, putative, unclassified, LOC_Os01g01240 retrotransposon protein, putative, Ty3-gypsy subclass, LOC_Os01g01250 transposon protein, putative, unclassified, expressed, LOC_Os01g01260 transposon protein, putative, unclassified, expressed, LOC_Os01g01270 retrotransposon protein, putative, unclassified, expressed, LOC_Os01g01280 expressed protein, LOC_Os01g01290 histone-like transcription factor and archaeal histone, putative, expressed, LOC_Os01g01295 expressed protein, LOC_Os01g01302 shikimate kinase, putative, expressed, LOC_Os01g01307 translocon-associated protein beta domain containing protein, expressed, LOC_Os01g01312 retrotransposon protein, putative, Ty1-copia subclass, expressed, LOC_Os01g01320 retrotransposon protein, putative, Ty1-copia subclass, expressed, LOC_Os01g01330 retrotransposon protein, putative, Ty1-copia subclass, expressed, LOC_Os01g01340 light-induced protein 1-like, putative, expressed, LOC_Os01g01350 SNF7 domain containing protein, putative, expressed, LOC_Os01g01360 peptide transporter PTR2, putative, expressed, LOC_Os01g01369 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed, LOC_Os01g01380 expressed protein, LOC_Os01g01390 expressed protein, LOC_Os01g01400 expressed protein, LOC_Os01g01410 TKL_IRAK_C-LEC.1 - TKL_IRAK_C-LEC has homology to C-type lectin receptors, expressed, LOC_Os01g01420 expressed protein, LOC_Os01g01430 No apical meristem protein, putative, expressed, LOC_Os01g01440 expressed protein, LOC_Os01g01450 stress responsive protein, putative, expressed, LOC_Os01g01460 retrotransposon protein, putative, Ty3-gypsy subclass, LOC_Os01g01470 no apical meristem protein, putative, expressed SNo: 159, Mutant_ID: FN-159, Generation: M2, Mutations: 48, Genes: 57, Seed availability: Yes. HITS PFG_2B-00134.L [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 50.90 LOCN Intron COOR C/8263-8688 HITS PFG_3A-16243.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 71.14 LOCN Intron COOR C/9374-10012

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