RiceGE: Genome Express Database ( Oct. 6, 2010 )


CODE Os01g01010 [Seq] [RiceGE6]  [RiceGE6 Text] [RiceGE v5] [About MSU Rice Annotation v 6.1] 
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene CHRO chr01 TITL Os01g01010.2 TBC domain containing protein, expressed COOR W/2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,9504-9562 HITS GGCTTTTTCTTTGACTG [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR W/1435-1451 NOTE 1 0 0 0 0 0 HITS GGTCCTCCAAATCTAGC [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR W/1641-1657 NOTE 1 0 1 0 0 0 HITS smRNA65671_1x [Seq] [About CSRDB smallRNA] TYPE smRNA CSRDB EVAL 100.00 LOCN 1000-Promotor COOR C/1642-1664 HITS smRNA142613_1x [Seq] [About CSRDB smallRNA] TYPE smRNA CSRDB EVAL 100.00 LOCN 1000-Promotor COOR C/1644-1667 HITS SAB2G05 [Seq] [GenBank] [About Genoplante Rice Tag Line] [iSect Primer] TYPE Genoplante T-DNA EVAL 5e-82 LOCN 1000-Promotor COOR C/1784-1937 HITS PFG_1C-02628.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 4e-90 LOCN 1000-Promotor COOR W/1925-2095 NOTE B02160 2707 Hwayoung T-DNA Right Border HITS PFG_1C-03428.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 6e-58 LOCN 1000-Promotor COOR W/1925-2041 NOTE B02766 2707 Hwayoung T-DNA Right Border HITS RMD_03Z11FA85 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/1978-2472 HITS RMD_TTL-03Z11FA85_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/1978-2472 HITS J075199P03 [GenBank] [About KOME] [Order from RGRC] [Microarray] TYPE KOME FL-cDNA EVAL 99.19 LOCN Exon COOR C/1983-2268,2354-2616,3357-3455,4457-4560,6136-6944,7028-7150,7232-7320,7408-7608,8210-8617,9102-9187,9274-9430,9504-9815 HITS RMD_03Z11FA76 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/2077-2569 HITS RMD_TTL-03Z11FA76_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/2077-2569 HITS At2g43490 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-137 LOCN Exon COOR W/2560-2579,3348-3383,4457-4491,6134-6168,6231-6260,6632-6664,6806-6851,6903-6915,6987-7000,7027-7069,7084-7095,7179-7197,7198-7210,7231-7259,7306-7318,7408-7475,7643-7673,7703-7716,8204-8243,8280-8303,8513-8547,9104-9131 HITS At2g43490 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-138 LOCN Exon COOR W/2560-2579,3348-3383,4457-4491,6134-6168,6231-6260,6632-6664,6806-6851,6903-6915,6987-7000,7027-7069,7084-7095,7179-7197,7198-7210,7231-7259,7306-7318,7408-7475,7643-7673,7703-7716,8204-8243,8280-8303,8513-8547,9104-9132,9189-9217 HITS At2g43490 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-138 LOCN Exon COOR W/2560-2579,3348-3383,4457-4491,6134-6168,6231-6260,6632-6664,6806-6851,6903-6915,6987-7000,7027-7069,7084-7095,7179-7197,7198-7210,7231-7259,7306-7318,7408-7475,7643-7673,7703-7716,8204-8243,8280-8303,8513-8547,9104-9132,9207-9241 HITS At3g59570 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-140 LOCN Exon COOR W/2560-2583,3363-3393,4457-4491,6134-6217,6231-6263,6539-6559,6641-6674,6818-6859,6888-6904,7027-7069,7079-7108,7179-7197,7231-7259,7305-7318,7408-7475,7491-7516,7517-7547,7582-7602,7632-7673,8204-8232,8283-8307,8519-8551,8613-8623,9110-9135,9177-9202 HITS RMD_03Z11FA84 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 8e-15 LOCN Intron COOR C/2691-2735 HITS RMD_TTL-03Z11FA84_NTLB5-1 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 1e-14 LOCN Intron COOR C/2691-2735 HITS GCTGCTATCAAGTCTTG [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN Intron COOR W/3999-4015 NOTE 2 0 0 0 0 0 HITS At3g49350 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 6e-22 LOCN Exon COOR W/4433-4475 HITS At5g24390 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 6e-23 LOCN Exon COOR W/4433-4475 HITS BT036959 [GenBank] TYPE Maize cDNA EVAL 5e-23 LOCN Exon COOR W/4442-4481 HITS BT038472 [GenBank] TYPE Maize cDNA EVAL 6e-36 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS BT063473 [GenBank] TYPE Maize cDNA EVAL 7e-23 LOCN Exon COOR W/4442-4481 HITS BT068086 [GenBank] TYPE Maize cDNA EVAL 8e-39 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS EU956831 [GenBank] TYPE Maize cDNA EVAL 1e-38 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS EU957547 [GenBank] TYPE Maize cDNA EVAL 8e-39 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS EU960190 [GenBank] TYPE Maize cDNA EVAL 7e-36 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS At4g28550 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 1e-32 LOCN Exon COOR W/4442-4481,7030-7071,7180-7197,7231-7260,7301-7324,7438-7495 HITS At5g41940 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 3e-25 LOCN Exon COOR W/4442-4480 HITS At5g53570 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 2e-26 LOCN Exon COOR W/4442-4481 HITS At5g54780 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 7e-35 LOCN Exon COOR W/4442-4481,7030-7071,7180-7197,7231-7260,7307-7332,7438-7495 HITS BT061142 [GenBank] TYPE Maize cDNA EVAL 3e-35 LOCN Exon COOR W/4457-4493,7030-7071,7231-7260,7438-7511 HITS At4g27100 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 2e-35 LOCN Exon COOR W/4457-4491,7030-7071,7231-7260,7438-7495 HITS RMD_03Z11DF31 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL e-164 LOCN Intron COOR W/5616-5924 HITS RMD_TTL-03Z11DF31_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL e-164 LOCN Intron COOR W/5616-5924 HITS RMD_05Z11HM81 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 4e-32 LOCN Intron COOR W/5851-5921 HITS RMD_TTL-05Z11HM81_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 5e-32 LOCN Intron COOR W/5851-5921 HITS At2g20440 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 1e-31 LOCN Exon COOR W/6905-6919,7030-7071,7231-7260,7438-7516 HITS At5g52580 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 4e-16 LOCN Exon COOR W/7093-7113,7438-7495 HITS PFG_2B-00134.L [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 0.0 LOCN Intron COOR C/7189-7688 NOTE B12302 2707 Hwayoung T-DNA Left Border HITS PFG_3A-16243.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 0.0 LOCN Intron COOR C/8358-9012 NOTE A31216 2715 Dongjin T-DNA Right Border HITS PFG_3A-09077.L [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 0.0 LOCN 300-UTR3 COOR C/9092-9821 NOTE A20640 2715 Dongjin T-DNA Left Border HITS PFG_3A-09077.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL e-163 LOCN 300-UTR3 COOR W/9857-10275 NOTE A20641 2715 Dongjin T-DNA Right Border CODE Os01g01010 [Seq] [RiceGE6] [RiceGE6 Text] [RiceGE v5] [About MSU Rice Annotation v 6.1]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene CHRO chr01 TITL Os01g01010.1 TBC domain containing protein, expressed COOR W/2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7232-7320,7408-7608,8210-8617,9104-9187,9274-9297 HITS GGCTTTTTCTTTGACTG [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR W/1435-1451 NOTE 1 0 0 0 0 0 HITS GGTCCTCCAAATCTAGC [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN 1000-Promotor COOR W/1641-1657 NOTE 1 0 1 0 0 0 HITS smRNA65671_1x [Seq] [About CSRDB smallRNA] TYPE smRNA CSRDB EVAL 100.00 LOCN 1000-Promotor COOR C/1642-1664 HITS smRNA142613_1x [Seq] [About CSRDB smallRNA] TYPE smRNA CSRDB EVAL 100.00 LOCN 1000-Promotor COOR C/1644-1667 HITS SAB2G05 [Seq] [GenBank] [About Genoplante Rice Tag Line] [iSect Primer] TYPE Genoplante T-DNA EVAL 5e-82 LOCN 1000-Promotor COOR C/1784-1937 HITS PFG_1C-02628.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 4e-90 LOCN 1000-Promotor COOR W/1925-2095 NOTE B02160 2707 Hwayoung T-DNA Right Border HITS PFG_1C-03428.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 6e-58 LOCN 1000-Promotor COOR W/1925-2041 NOTE B02766 2707 Hwayoung T-DNA Right Border HITS RMD_03Z11FA85 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/1978-2472 HITS RMD_TTL-03Z11FA85_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/1978-2472 HITS J075199P03 [GenBank] [About KOME] [Order from RGRC] [Microarray] TYPE KOME FL-cDNA EVAL 99.19 LOCN Exon COOR C/1983-2268,2354-2616,3357-3455,4457-4560,6136-6944,7028-7150,7232-7320,7408-7608,8210-8617,9102-9187,9274-9430,9504-9815 HITS RMD_03Z11FA76 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/2077-2569 HITS RMD_TTL-03Z11FA76_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 0.0 LOCN 1000-Promotor COOR W/2077-2569 HITS At2g43490 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-137 LOCN Exon COOR W/2560-2579,3348-3383,4457-4491,6134-6168,6231-6260,6632-6664,6806-6851,6903-6915,6987-7000,7027-7069,7084-7095,7179-7197,7198-7210,7231-7259,7306-7318,7408-7475,7643-7673,7703-7716,8204-8243,8280-8303,8513-8547,9104-9131 HITS At2g43490 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-138 LOCN Exon COOR W/2560-2579,3348-3383,4457-4491,6134-6168,6231-6260,6632-6664,6806-6851,6903-6915,6987-7000,7027-7069,7084-7095,7179-7197,7198-7210,7231-7259,7306-7318,7408-7475,7643-7673,7703-7716,8204-8243,8280-8303,8513-8547,9104-9132,9189-9217 HITS At2g43490 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-138 LOCN Exon COOR W/2560-2579,3348-3383,4457-4491,6134-6168,6231-6260,6632-6664,6806-6851,6903-6915,6987-7000,7027-7069,7084-7095,7179-7197,7198-7210,7231-7259,7306-7318,7408-7475,7643-7673,7703-7716,8204-8243,8280-8303,8513-8547,9104-9132,9207-9241 HITS At3g59570 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL e-140 LOCN Exon COOR W/2560-2583,3363-3393,4457-4491,6134-6217,6231-6263,6539-6559,6641-6674,6818-6859,6888-6904,7027-7069,7079-7108,7179-7197,7231-7259,7305-7318,7408-7475,7491-7516,7517-7547,7582-7602,7632-7673,8204-8232,8283-8307,8519-8551,8613-8623,9110-9135,9177-9202 HITS RMD_03Z11FA84 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 8e-15 LOCN Intron COOR C/2691-2735 HITS RMD_TTL-03Z11FA84_NTLB5-1 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 1e-14 LOCN Intron COOR C/2691-2735 HITS GCTGCTATCAAGTCTTG [Seq] [About MPSS smallRNA]
Note : STM SNU FLR SNM ABA UNT TYPE smRNA MPSS EVAL 100.00 LOCN Intron COOR W/3999-4015 NOTE 2 0 0 0 0 0 HITS At3g49350 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 6e-22 LOCN Exon COOR W/4433-4475 HITS At5g24390 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 6e-23 LOCN Exon COOR W/4433-4475 HITS BT036959 [GenBank] TYPE Maize cDNA EVAL 5e-23 LOCN Exon COOR W/4442-4481 HITS BT038472 [GenBank] TYPE Maize cDNA EVAL 6e-36 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS BT063473 [GenBank] TYPE Maize cDNA EVAL 7e-23 LOCN Exon COOR W/4442-4481 HITS BT068086 [GenBank] TYPE Maize cDNA EVAL 8e-39 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS EU956831 [GenBank] TYPE Maize cDNA EVAL 1e-38 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS EU957547 [GenBank] TYPE Maize cDNA EVAL 8e-39 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS EU960190 [GenBank] TYPE Maize cDNA EVAL 7e-36 LOCN Exon COOR W/4442-4481,7030-7071,7231-7260,7438-7495 HITS At4g28550 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 1e-32 LOCN Exon COOR W/4442-4481,7030-7071,7180-7197,7231-7260,7301-7324,7438-7495 HITS At5g41940 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 3e-25 LOCN Exon COOR W/4442-4480 HITS At5g53570 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 2e-26 LOCN Exon COOR W/4442-4481 HITS At5g54780 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 7e-35 LOCN Exon COOR W/4442-4481,7030-7071,7180-7197,7231-7260,7307-7332,7438-7495 HITS BT061142 [GenBank] TYPE Maize cDNA EVAL 3e-35 LOCN Exon COOR W/4457-4493,7030-7071,7231-7260,7438-7511 HITS At4g27100 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 2e-35 LOCN Exon COOR W/4457-4491,7030-7071,7231-7260,7438-7495 HITS RMD_03Z11DF31 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL e-164 LOCN Intron COOR W/5616-5924 HITS RMD_TTL-03Z11DF31_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL e-164 LOCN Intron COOR W/5616-5924 HITS RMD_05Z11HM81 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 4e-32 LOCN Intron COOR W/5851-5921 HITS RMD_TTL-05Z11HM81_NTLB5 [Seq] [About RMD] [Trait] [iSect Primer] [Request] TYPE RMD T-DNA EVAL 5e-32 LOCN Intron COOR W/5851-5921 HITS At2g20440 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 1e-31 LOCN Exon COOR W/6905-6919,7030-7071,7231-7260,7438-7516 HITS At5g52580 [T-DNA Express] [Transcriptome] [T-DNA Express Text] TYPE Arabidopsis cDNA EVAL 4e-16 LOCN Exon COOR W/7093-7113,7438-7495 HITS PFG_2B-00134.L [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 0.0 LOCN Intron COOR C/7189-7688 NOTE B12302 2707 Hwayoung T-DNA Left Border HITS PFG_3A-16243.R [Seq] [About PFG] [Paper] [Vector] [iSect Primer] [Order/Request] [RAP-DB] TYPE PFG T-DNA EVAL 0.0 LOCN Intron COOR C/8358-9012 NOTE A31216 2715 Dongjin T-DNA Right Border

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