RiceGE: Genome Express Database ( Jan. 16, 2018 )


CLON OSJNOa264G09[GenBank] 
TYPE Rice BACs
CHRO chr01
EVAL 0.0
COOR W/1001-32687
NOTE   BAC  AP008219.1

HITS Os01g01010.1UTR5[Seq] 
TYPE UTRs
TITL LOC_Os01g01010.1  five_prime_UTR  
LOCN Exon
COOR W/2903-3268,3354-3448
HITS Os01g01010.2UTR5[Seq] 
TYPE UTRs
TITL LOC_Os01g01010.2  five_prime_UTR  
LOCN Exon
COOR W/2984-3255,3354-3448
HITS Os01g01010.1[Seq] [RiceGE7]  [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7] 
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01010.1 CDS TBC domain containing protein, expressed LOCN Exon COOR W/3449-3616,4357-4455,5457-5560,7136-7944,8028-8150,8232-8320,8408-8608,9210-9617,10104-10187,10274-10297 HITS Os01g01010.2[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01010.2 CDS TBC domain containing protein, expressed LOCN Exon COOR W/3449-3616,4357-4455,5457-5560,7136-7944,8028-8150,8232-8320,8408-8608,9210-9311,10104-10187,10232-10244,10504-10562 HITS Os01g01010.1UTR3[Seq] TYPE UTRs TITL LOC_Os01g01010.1 three_prime_UTR LOCN Exon COOR W/10298-10430,10504-10817 HITS Os01g01019.1UTR5[Seq] TYPE UTRs TITL LOC_Os01g01019.1 five_prime_UTR LOCN Exon COOR W/11218-11797 HITS Os01g01019.1[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01019.1 CDS expressed protein LOCN Exon COOR W/11798-12060,12152-12317 HITS Os01g01019.1UTR3[Seq] TYPE UTRs TITL LOC_Os01g01019.1 three_prime_UTR LOCN Exon COOR W/12318-12435 HITS Os01g01030.1UTR5[Seq] TYPE UTRs TITL LOC_Os01g01030.1 five_prime_UTR LOCN Exon COOR W/12648-12773 HITS Os01g01030.1[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01030.1 CDS monocopper oxidase, putative, expressed LOCN Exon COOR W/12774-13813,13906-14271,14359-14437,14969-15171,15266-15359 HITS Os01g01030.1UTR3[Seq] TYPE UTRs TITL LOC_Os01g01030.1 three_prime_UTR LOCN Exon COOR W/15360-15915 HITS Os01g01040.1UTR5[Seq] TYPE UTRs TITL LOC_Os01g01040.1 five_prime_UTR LOCN Exon COOR W/16292-16598 HITS Os01g01040.4UTR5[Seq] TYPE UTRs TITL LOC_Os01g01040.4 five_prime_UTR LOCN Exon COOR W/16292-16598 HITS Os01g01040.2UTR5[Seq] TYPE UTRs TITL LOC_Os01g01040.2 five_prime_UTR LOCN Exon COOR W/16321-16598 HITS Os01g01040.3UTR5[Seq] TYPE UTRs TITL LOC_Os01g01040.3 five_prime_UTR LOCN Exon COOR W/16321-16598 HITS Os01g01040.1[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01040.1 CDS expressed protein LOCN Exon COOR W/16599-16976,17383-17474,17558-18258,18501-18571,18968-19057,19142-19321,19531-19593 HITS Os01g01040.2[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01040.2 CDS expressed protein LOCN Exon COOR W/16599-16976,17383-17474,17558-18258,18501-18571,18968-19057,19142-19321,19531-19593 HITS Os01g01040.3[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01040.3 CDS expressed protein LOCN Exon COOR W/16599-16976,17383-17474,17558-18258,18501-18571,18968-19057,19142-19321,19531-19593 HITS Os01g01040.4[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01040.4 CDS expressed protein LOCN Exon COOR W/16599-16976,17383-17474,17558-18272 HITS Os01g01040.4UTR3[Seq] TYPE UTRs TITL LOC_Os01g01040.4 three_prime_UTR LOCN Exon COOR W/18273-18304 HITS Os01g01040.1UTR3[Seq] TYPE UTRs TITL LOC_Os01g01040.1 three_prime_UTR LOCN Exon COOR W/19594-19629,19734-20323 HITS Os01g01040.2UTR3[Seq] TYPE UTRs TITL LOC_Os01g01040.2 three_prime_UTR LOCN Exon COOR W/19594-19629,19731-20323 HITS Os01g01040.3UTR3[Seq] TYPE UTRs TITL LOC_Os01g01040.3 three_prime_UTR LOCN Exon COOR W/19594-20323 HITS Os01g01050.1UTR5[Seq] TYPE UTRs TITL LOC_Os01g01050.1 five_prime_UTR LOCN Exon COOR W/22841-23231 HITS Os01g01050.2UTR5[Seq] TYPE UTRs TITL LOC_Os01g01050.2 five_prime_UTR LOCN Exon COOR W/22841-23257 HITS Os01g01050.1[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01050.1 CDS R3H domain containing protein, expressed LOCN Exon COOR W/23232-23281,23572-23847,23962-24033,24492-24577,25445-25519,25883-26391 HITS Os01g01050.2[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01050.2 CDS R3H domain containing protein, expressed LOCN Exon COOR W/23258-23281,23615-23847,23962-24033,24492-24577,25445-25519,25883-26391 HITS Os01g01050.1UTR3[Seq] TYPE UTRs TITL LOC_Os01g01050.1 three_prime_UTR LOCN Exon COOR W/26392-26971 HITS Os01g01050.2UTR3[Seq] TYPE UTRs TITL LOC_Os01g01050.2 three_prime_UTR LOCN Exon COOR W/26392-26971 HITS Os01g01060.1UTR5[Seq] TYPE UTRs TITL LOC_Os01g01060.1 five_prime_UTR LOCN Exon COOR W/27136-27220 HITS Os01g01060.1[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01060.1 CDS 40S ribosomal protein S5, putative, expressed LOCN Exon COOR W/27221-27292,27370-27641,28090-28293,28365-28419 HITS Os01g01060.1UTR3[Seq] TYPE UTRs TITL LOC_Os01g01060.1 three_prime_UTR LOCN Exon COOR W/28420-28651 HITS Os01g01070.1UTR5[Seq] TYPE UTRs TITL LOC_Os01g01070.1 five_prime_UTR LOCN Exon COOR W/29818-29939 HITS Os01g01070.2UTR5[Seq] TYPE UTRs TITL LOC_Os01g01070.2 five_prime_UTR LOCN Exon COOR W/29818-29939 HITS Os01g01070.3UTR5[Seq] TYPE UTRs TITL LOC_Os01g01070.3 five_prime_UTR LOCN Exon COOR W/29818-29939 HITS Os01g01070.1[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01070.1 CDS expressed protein LOCN Exon COOR W/29940-29976,30146-30228,30735-30806,30885-30963,31258-31331,31505-31606,32377-32466,32542-32616,32712-32744,32828-32908,33277-33330,33400-33471,33543-33617,33975-34124 HITS Os01g01070.2[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01070.2 CDS expressed protein LOCN Exon COOR W/29940-29976,30146-30228,30735-30806,30885-30963,31258-31325,31505-31606,32377-32466,32542-32616,32712-32744,32828-32908,33277-33330,33400-33471,33543-33617,33975-34124 HITS Os01g01070.3[Seq] [RiceGE7] [RiceGE7 Text] [RiceGE v6] [About MSU Rice Annotation v 7]
[Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] TYPE Gene TITL LOC_Os01g01070.3 CDS expressed protein LOCN Exon COOR W/29940-29976,30146-30228,30735-30806,30885-30963,31258-31325,31505-31606,32377-32466,32542-32616,32712-32744,32828-32908,33277-33330,33400-33471,33543-33647 HITS Os01g01070.3UTR3[Seq] TYPE UTRs TITL LOC_Os01g01070.3 three_prime_UTR LOCN 1000-Promotor COOR W/33648-33943

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