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a. Genome : BGI-RIS sequenced and assembled rice indica 9311 pseudo-molecules (Jan-26-2005) and annotation added by SIGnAL (Jul-24-2007).
b. T-DNA/Ds FST
- 1. Postech PFG T-DNA, S. Korea [Publication]
- 2. Rice Mutant Data, Huazhong Agricultural University, China [Publication].
 We have uploaded RMD's newly comprehensive FSTs into our database. They have 85,315 sequences in total. 47,231 are mapped onto the japanica genome and 46,481 onto the indica genome. Due to difference of their new names and the old ones, we will keep the old names a while. However, we will remove them later.
- 3. Taiwan Rice Insertion Mutant (TRIM), Academia Sinica
- 4. NIAS Tos17 insertion mutants [RTIM], Japan [Publication]
- 5. CIRAD / Genoplante oryza tag lines, France [Publication]
- 6. Zhejiang Univ. rice T-DNA, China [Publication]
- 7. UCD dSpm/Ds, USA
- 8. CSIRO Ac/Ds, Australia [Publication]
- 9. PSNU Ds, Korea
- 10. EU-OSTID Ds, Netherlands
- 11. SHIP T-DNA, China.
c. cDNA and others
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| Categery | Group | Sequences | Mapped | Update |
|---|
| Gene | BGI | | 48,372 | 08/27/2007 |
| FgeneSH | | 47,316 | 08/27/2007 |
| Insertions | RTIM | 77,740 | 77,205 | 06/12/2011 |
| Genoplante | 29,262 | 27,840 | 10/22/2007 |
| ZJU T-DNA | 741 | 702 | 08/27/2007 |
| UCD FST | 17,730 | 17,208
dSpm: 12,457
Ds: 4,751 | 10/12/2009 |
| TRIM FST | 59,804 | 63,948 | 08/16/2013 |
| CSIRO FST | 611 | 584 | 08/27/2007 |
| RMD FST | 85,315 | 46,481(14K) | 01/20/2012 |
| PFG T-DNA | 107,171 | 105,516 | 01/25/2010 |
| GSNU Ds | 1,072 | 1,031 | 08/27/2007 |
| EU-OSTID Ds | 1,315 | 1,267 | 08/27/2007 |
| SHIP T-DNA | 10,381 | 10,092 (7,630 lines) | 01/05/2010 |
| Full-length cDNAs | KOME | 35,708 | 36,740 | 02/18/2009 |
| RiCD indica | 10,083 | 9,369 (9,205) | 10/27/2009 |
| Community | 3,371 | 3,410 | 02/04/2012 |
| EST indica contigs | | 234,676 | 221,106
ctg: 22,796 | 08/27/2007 |
| Markers (AFLP,RFLP,RAPD,STS..) | | | 8,001 | 08/27/2007 |
| Homology cDNA | Wheat | | 1,064 | 02/27/2008 |
| Maize | | 6,176 | 02/27/2008 |
| Barley | | 456 | 02/27/2008 |
| Brassica | | 866 | 02/27/2008 |
| Yale Tiling Array | | | 14,744,624 oligos | 08/27/2007 |
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