RiceGE (indica): Database Sources, Details and Summary ( Aug. 16, 2013 )

1. Data Sources :
    

a. Genome : BGI-RIS sequenced and assembled rice indica 9311 pseudo-molecules (Jan-26-2005) and annotation added by SIGnAL (Jul-24-2007).

b. T-DNA/Ds FST

c. cDNA and others

2. Data Details :
CategeryGroupSequencesMapped    Update     
GeneBGI 48,37208/27/2007
FgeneSH 47,31608/27/2007
InsertionsRTIM77,74077,20506/12/2011
Genoplante29,26227,84010/22/2007
ZJU T-DNA74170208/27/2007
UCD FST17,73017,208
dSpm: 12,457
Ds: 4,751
10/12/2009
TRIM FST38,84037,002(11,491)08/16/2013
CSIRO FST61158408/27/2007
RMD FST85,31546,481(14K)01/20/2012
PFG T-DNA107,171105,51601/25/2010
GSNU Ds1,0721,03108/27/2007
EU-OSTID Ds1,3151,26708/27/2007
SHIP T-DNA10,38110,092 (7,630 lines)01/05/2010
Full-length cDNAsKOME35,70836,74002/18/2009
RiCD indica10,0839,369 (9,205)10/27/2009
Community3,3713,41002/04/2012
EST indica contigs 234,676221,106
ctg: 22,796
08/27/2007
Markers (AFLP,RFLP,RAPD,STS..)  8,00108/27/2007
Homology cDNAWheat 1,06402/27/2008
Maize 6,17602/27/2008
Barley 45602/27/2008
Brassica 86602/27/2008
Yale Tiling Array  14,744,624 oligos08/27/2007

3. Summary (08/25/2007) :

BGI GenesPFG T-DNA RTIM Tos17RMD T-DNA TRIM T-DNAGenoplt T-DNA ZJ T-DNACSIRO Ac/Ds UCDavis dSpm/DsPSNU DsOSTID DsSHIP T-DNATotal
Mapped 65897 17803 15307 6856 27840 702 584 9953 1031 1267 6618172500
Exon 6276 2135 1371 735 2687 45 138 977 229 344 373 11345
Intron 6644 2075 1743 738 2607 62 85 712 150 188 478 10838
5' UTR 3690 375 677 421 778 17 39 319 61 70 209 6014
Promoter 5113 594 1173 538 1226 35 40 483 78 110 378 8161
Unique
Gene Hits
16186 3736 4517 2330 5960 159 286 2237 490 702 1328 22959
NOTE: 5' UTR : 300 to ATG Promoter : 1000 to 300 bases away from ATG. ).
4. Download Data : http://signal.salk.edu/database/RiceiGE.

hits since Jun 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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